Citrus Sinensis ID: 001352

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090---
Protein Sequence
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHHcccccccccccHHHEHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccccccEEEEccccccEEEEEcccccEEEEEccccccEEccccccccEEEEEEcccccEEEEccccEEEEEcccccEEEccccccEEEEEccccccEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEEccccEEEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccEEEccccccEEEEEEcccccEEEEEcccccccEEEEEcccccEEEEcccccccEEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccccccEEEEcccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccEEEEEEccccEEEEccccccccccEEEccccEEEccccEEEccccccEEEEEccccccEEEEEEEEcccEEEEEEEcccEEEEEEEccccEEEEEEccccccEEEEEcccccEEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEccccEEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEccccccccccccccEEEEEccccEEEEEEcccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccccccccccEEcEEEEEEcccccEEEEEEccccEEEEcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccHHccHHHccccccccEEEEccccccccccccccccEEcccccccccccccccEEcccccccccccccccccccEEEEccccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEEEEEEccccccccHHHHcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEcccEEEEEcccccEEEEEccccccEEEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEccccEEEEEEEccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccccccccccccEEEEEEccccccEEEEEccccEEEEEEcccccccccccccccEEEEcccccEEEEccccc
Coil and Loop (DISEMBL)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFtkvddnrystkIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEanpilqgklkfpsiKRQRLRRLINQSLNWQhvhcanpqpnpdintLFVDHVCqlqetdfsgqssesnalppqttqspsswnfsssmltdSAVSFVALslsdptnkvavtmdrpedsdilsekspvrilneqastvtypgvslknipdyspksslkKEMFQsfgetsfsdfpKTVAQTLiegssspmsmdfhpVQHTLLLVGtnvgdtglwdvnsgqklFIRNFKVWDIGACSMLFKTAlvrdpgvsvnrvvwspdgsllgVAYSKHIVQLYAyhggsdarQQLEIdahvgnvndlafsapckqisvitcgddktikVWDAvtgsrtysfeghgapvyslcphakeniHFIFSISVDGKIKAWLYDSlgarvdydapglgctrmaysangrrlfscgtskegESFLVEWNESEGAIKRTYQglqlqhnsvsvvhfdtakdQILAAGDDHVIKIWDMNKVQLLTTidaggglpenpricfnknGTLLAVIANEnrikiletpesnsvdaagvlsdnlrklsvnpistvtgagiangsvsvnedpkedvkpeisveaenksevekplfarpsecqslllpskvkankisrltyNNGGQAIFALASNGVhlmwrwprndltlsteattkvpprlyqprhgpqfmvndttdsnsqeavpcfalskndaylfsaSGGVISLYIVMTFKTIltimppsptatslafnphdnnviaigmddstiLIYNARSSEVISKLEGHSKRVTGLVFSDALNILVssggdaqifvwdvdgwgiqtcrslqtpdgvmtlapsethiqfHKDQTRFLLVHETHLAIYEAEELTclkqwfpissvpisqatfscdcrmvftsfvdgtlsiheASNLEVQCRILSTaylrpttsclhvyphaiaahplkptqfavgltngevyviepnepgdtwavlppdeivgdqptstsegdramdg
Flexible Loop (DISEMBL)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSsftkvddnrysTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIeanpilqgklkFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLsdptnkvavtmdrpedsdilsekspvrilneqastvtypgvslknipDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIsvitcgddktIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIletpesnsvdaAGVLSDNLRKLSVNPIStvtgagiangsvsvnedpkedVKPEisveaenksevekplfarpsecqslllpSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEivgdqptstsegdramdg
Low Complexity Region (SEG)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG
Disordered region (IsUnstruct)
******DLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQ**************************************FVA*********************************************************************************************FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET********AGVLSDNLRKLSVNPISTVTG*********************************************LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST*******************************AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL**********************
Disordered Region (DISOPRED)
**KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT**************************
Disordered Region (DISEMBL)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQET***********************NFSSSMLTDSAVSFVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV***********ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGD**************
Disordered Region (DISPRO)
**KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1093	2.2.26 [Sep-21-2011]
Q0WV90	1120	Topless-related protein 1	yes	no	0.963	0.940	0.544	0.0
Q94AI7	1131	Protein TOPLESS OS=Arabid	no	no	0.984	0.951	0.538	0.0
Q27GK7	1135	Topless-related protein 4	no	no	0.972	0.936	0.494	0.0
Q9LRZ0	1131	Topless-related protein 2	no	no	0.958	0.926	0.466	0.0
Q84JM4	1108	Topless-related protein 3	no	no	0.964	0.951	0.466	0.0
Q00808	1356	Vegetative incompatibilit	yes	no	0.262	0.211	0.274	8e-19
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.492	0.352	0.220	8e-15
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.466	0.405	0.220	2e-13
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.459	0.298	0.225	1e-11
P49695	742	Probable serine/threonine	no	no	0.231	0.340	0.254	2e-11

>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3

 Score = 1187 bits (3072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1119 (54%), Positives = 779/1119 (69%), Gaps = 66/1119 (5%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD  KA++IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP+++  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C+L               G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKVAV----------TMDRPE-D 268
            Q T SP     + W  S S +   AVS   ++L  P+ + A+           +D P  D
Sbjct: 240  QPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYPSGD 299

Query: 269  SDILSEKS-PVRILNEQASTV-----TYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 322
            SD +S+++ P+ I +E +  V     T+PG           ++    + F++       D
Sbjct: 300  SDHVSKRTRPMGISDEVSLGVNMLPMTFPG-----------QAHGHNQTFKAP-----DD 343

Query: 323  FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIG 382
             PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  + FKVWD+ 
Sbjct: 344  LPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLS 402

Query: 383  ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 442
             CSM  + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHV
Sbjct: 403  KCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHV 462

Query: 443  GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 502
            G VND+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI F
Sbjct: 463  GGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQF 522

Query: 503  IFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 562
            IFS ++DGKIKAWLYD++G+RVDY+APG  CT MAYSA+G RLFSCGTSK+GESF+VEWN
Sbjct: 523  IFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWN 582

Query: 563  ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 622
            ESEGA+KRTYQG      S+ VV FDT K++ LAAGDD  IK WDM+ +QLLT IDA GG
Sbjct: 583  ESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGG 640

Query: 623  LPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTG 681
            L  +PRI FNK G+LLAV AN+N IK++   +    +     LS    K ++N I  V  
Sbjct: 641  LQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVER 700

Query: 682  AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKI 738
                     +N D +   DVKP I+ E+ +KS+V K      PS+C+SL LP  ++  KI
Sbjct: 701  PASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKI 760

Query: 739  SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 798
            SRL + N G AI ALASN +HL+W+W RND   + +AT  +PP+ +QP  G   M ND  
Sbjct: 761  SRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASG-ILMTNDVA 819

Query: 799  DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 858
            ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN
Sbjct: 820  ETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 879

Query: 859  VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 918
            +IAIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DG
Sbjct: 880  IIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDG 939

Query: 919  WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI- 977
            W  Q  + LQ P G  T + S+T +QFH+DQ  FL+VHET LAIYE  +L C+KQW P+ 
Sbjct: 940  WEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQW-PVR 998

Query: 978  -SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1036
             S+ PI+ ATFSCD ++++TSF+D T+ +  ++NL ++CR+  +AYL  + S  +V+P  
Sbjct: 999  ESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLV 1058

Query: 1037 IAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1075
            IAAHP +   FAVGL++G V++ EP E    W V PP E
Sbjct: 1059 IAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097

Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1

 Score = 1180 bits (3052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1143 (53%), Positives = 788/1143 (68%), Gaps = 67/1143 (5%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD  KA++IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP+++  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKVAV----------TMDRPE-D 268
            Q T SP     + W  S S +   AVS  A++L  P+   A+          ++D P  D
Sbjct: 240  QPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYPSAD 299

Query: 269  SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 327
            S+ +S+++ P+ I +E    V    +S      +S ++      F++       D PKTV
Sbjct: 300  SEHVSKRTRPMGISDEVNLGVNMLPMS------FSGQAHGHSPAFKAP-----DDLPKTV 348

Query: 328  AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML 387
            A+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  + FKVWD+  CSM 
Sbjct: 349  ARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMP 407

Query: 388  FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 447
             + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND
Sbjct: 408  LQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVND 467

Query: 448  LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 507
            ++FS P KQ+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS +
Sbjct: 468  ISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTA 527

Query: 508  VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 567
            +DGKIKAWLYD++G+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA
Sbjct: 528  LDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGA 587

Query: 568  IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 627
            +KRTYQG   +  S+ VV FDT K++ LAAGDD  IK WDM+ VQLLT ID  GGL  +P
Sbjct: 588  VKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASP 645

Query: 628  RICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPI-----STVTG 681
            RI FNK G+LLAV  NEN IKI+   +    +     +S    K ++N I     +  T 
Sbjct: 646  RIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATS 705

Query: 682  AGIANGSVSV------NEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSK 732
            AG A+ S +V      N D +   DVKP I+ E+ +KS++ K    + PS+C+SL LP  
Sbjct: 706  AGHADRSANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPEN 765

Query: 733  VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 792
            ++  KISRL + N G AI ALASN +HL+W+W RN+   + +AT  +PP+ +QP  G   
Sbjct: 766  LRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASG-IL 824

Query: 793  MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF 852
            M ND  ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF
Sbjct: 825  MTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 884

Query: 853  NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 912
            +P DNN+IAIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ 
Sbjct: 885  HPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLC 944

Query: 913  VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK 972
            VW+ DGW  Q  + L  P G    APS+T +QFH+DQ  FL+VHET LAIYE  +L C+K
Sbjct: 945  VWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMK 1004

Query: 973  QWFPISSV-PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1031
            QW    S+ PI+ ATFSCD ++V+ SF+D T+ +  ++NL ++CR+  +AYL  + S  +
Sbjct: 1005 QWAVRESLAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSN 1064

Query: 1032 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE--IVGDQPTSTSEGDR 1089
            V+P  IAAHP +P  FAVGL++G V++ EP E    W V PP E       PT+ S G  
Sbjct: 1065 VHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGAS 1124

Query: 1090 AMD 1092
            A D
Sbjct: 1125 ASD 1127

Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2

 Score = 1077 bits (2785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/1158 (49%), Positives = 744/1158 (64%), Gaps = 95/1158 (8%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F ++ H LE+ES F+F+M++FED +  G+W+DVE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD  D AKA++IL K+LK F+  NEELFKE+  LLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L + R++E LSKY GD  SAR  M+ ELK++IEANP+ + KL+FPS+K  RLR LINQSL
Sbjct: 121  LTNFRENEQLSKY-GDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   +    PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPF 239

Query: 225  QTTQSPSSWNFSSSM------------------LTDSAVSFVALSL--SDPTNKVAVTMD 264
            Q T +P + + +  M                    +SAVS +      S PTN +++   
Sbjct: 240  QPTPAPLTTSLAGWMPNPSVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSMDYQ 299

Query: 265  RPEDSDILSEKSPVRI------LNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGET 318
              +   +L    P  I      L      VTYPG                    QS    
Sbjct: 300  TADSESVLKRPRPFGISDGVNNLPVNVLPVTYPG--------------------QSHAHA 339

Query: 319  SFS--DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF 376
            ++S  D PK V++ L +GS+   SMDFHPVQ T+LLVGTN+GD  +W+V S +KL  R+F
Sbjct: 340  TYSTDDLPKNVSRILSQGSAI-KSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSF 398

Query: 377  KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 436
            KVWD+  C++  + +L  +   +VNRVVWSPDG LLGVAYSKHIV +Y+YHGG D R  L
Sbjct: 399  KVWDLATCTVNLQASLASEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHL 458

Query: 437  EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 496
            EIDAH GNVNDLAFS P +Q+ V+TCG+DKTIKVWDAVTG++ ++FEGH APVYS+CPH 
Sbjct: 459  EIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQ 518

Query: 497  KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 556
            KENI FIFS +VDGKIKAWLYD++G+RVDYDAPG  CT MAY A+G RLFSCGTSKEGES
Sbjct: 519  KENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGES 578

Query: 557  FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
            F+VEWNESEGA+KRTY GL  +  SV VV FDT K++ L AGD+  +K WDM+ V LL++
Sbjct: 579  FIVEWNESEGAVKRTYLGLGKR--SVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSS 636

Query: 617  IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKLS 672
              A GGLP +P +  NK GTLLAV   +N IKIL   E     +S+   G+ S      S
Sbjct: 637  TAAEGGLPSSPCLRINKEGTLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGS 696

Query: 673  V--NPI-------STVTGAGIANGSVS--------VNEDPKE--DVKPEISVEAENKSEV 713
            V   PI       ++ TG  ++ G  S        +N D +   DVKP I+ +AE     
Sbjct: 697  VAKGPIVGTFGTPNSSTGMSLSMGERSGPVASVTGLNGDNRSLPDVKPRIADDAEKSKTW 756

Query: 714  EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 773
            +    +  S+ ++L LP  +   ++ +L Y N G AI ALA N  H +W+W +++  L  
Sbjct: 757  KLTEISERSQLRTLRLPDTLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLG 816

Query: 774  EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT 833
            +A + VPP+L+QP  G   M NDT + N ++ VPCFALSKND+Y+ SASGG ISL+ +MT
Sbjct: 817  KANSNVPPQLWQPSSG-VLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMT 875

Query: 834  FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 893
            FKT+ T M P P ATSLAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH KRVTGL
Sbjct: 876  FKTMTTFMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGL 935

Query: 894  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 953
             FS+ LN+LVSSG D+Q+ VW +DGW  Q  + +Q P G      + T +QFH+DQ   L
Sbjct: 936  AFSNVLNVLVSSGADSQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVL 995

Query: 954  LVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1012
            +VH + LAIYEA +L  +KQW P  SS  ++ A +SCD + ++ +F DG++SI  A+ L+
Sbjct: 996  VVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQ 1055

Query: 1013 VQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV-L 1071
            ++CRI   +YL P+     VYP  +AAHP +P QFAVGLT+G V+VIEP  P   W +  
Sbjct: 1056 LKCRIGPNSYL-PSNPSSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISA 1114

Query: 1072 PPDEIVGDQPTSTSEGDR 1089
            PP+   G   +S    D+
Sbjct: 1115 PPENGAGPSVSSAPGSDQ 1132

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2

 Score = 1006 bits (2601), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/1121 (46%), Positives = 725/1121 (64%), Gaps = 73/1121 (6%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F ES H LE+ES F+F++K+FE+  L G+W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD +D AKA+ IL KDLK FA  NEEL+KE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSK YGD  SAR  M  ELK++IEANP+ + KL FPS K  RLR LINQSL
Sbjct: 121  LENFRENEQLSK-YGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 233
            NWQH  C NP+PNPDI TLF+DH C         ++     LP      PS++       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFLDHSCSPSN---GARALTPVNLPVAAVARPSNFVPLGVHG 236

Query: 234  -NFSSSMLTDSAVSFVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYPG 292
              F S+       + +A  +++P    +V       S +++  SP  +   Q + + +P 
Sbjct: 237  GPFQSNPAPAPNANALAGWMANPNPSSSVP------SGVVA-ASPFPMQPSQVNELKHPR 289

Query: 293  VSLKNIPDYSPKSSLKKEMFQ----------------SFGETSFSDFPKTVAQTLIEGSS 336
                ++     +S+  +++ +                S    S  D P+ V  T+ +GS 
Sbjct: 290  APSNSLGLMDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSV 349

Query: 337  SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 396
              +SMDFHP  HTLL VG + G+  LW+V S +K+    FK+W++ ACS++F+ ++V++P
Sbjct: 350  V-ISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEP 408

Query: 397  GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ 456
             +SV RV WSPDG+LLGV+++KH++ +YAY  GSD RQ LEIDAHVG VNDLAF+ P KQ
Sbjct: 409  SISVTRVAWSPDGNLLGVSFTKHLIHVYAYQ-GSDLRQHLEIDAHVGCVNDLAFAHPNKQ 467

Query: 457  ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 516
            + V+TCGDDK IKVWD ++G + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWL
Sbjct: 468  MCVVTCGDDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWL 526

Query: 517  YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 576
            YD++G+RVDYDAPG  CT M YSA+G RLFSCGTSKEG+SFLVEWNESEGA+KRTY G  
Sbjct: 527  YDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLG-- 584

Query: 577  LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 636
             +  S  VV FDT +++ LA G+D+ IK W+M+   LLT ++A GGLP  PR+ FNK+G 
Sbjct: 585  FRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGN 644

Query: 637  LLAV---------IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 687
            LLAV         +AN + ++ L   E+ S +A+    D   K+S + +++     I   
Sbjct: 645  LLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASID--MKVSTSAMASSISPAIGKI 702

Query: 688  SVSVNEDPKEDVKPEISVEAENKS----------EVEKPL----FARPSECQSLLLP-SK 732
                   P         +EA +++          +  KPL       P++C+ + +P SK
Sbjct: 703  EHMDAGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSK 762

Query: 733  VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 792
               +K++RL Y N G  + AL SNGV  +W+W RN+   + +AT  V P+ +QP  G   
Sbjct: 763  DSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSG-LL 821

Query: 793  MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF 852
            M ND  + N + +VPC ALSKND+Y+ SA GG +SL+ +MTFK + T MPP P +T LAF
Sbjct: 822  MANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAF 880

Query: 853  NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 912
            +P DNN+IAIGM+DS+I IYN R  EV +KL+GH K +TGL FS ALNILVSSG DAQ+F
Sbjct: 881  HPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLF 940

Query: 913  VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK 972
             W  D W  +   ++Q P G   +   +T +QFH DQ + L+ HET LAIY+A ++ C+ 
Sbjct: 941  FWTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMECIH 998

Query: 973  QWFPISSV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL-RPTTSC 1029
            +W P  ++  PI+ A++SC+ ++V+ SF DG +++ +A +L ++CRI  +AY+ +PT + 
Sbjct: 999  KWVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNS 1058

Query: 1030 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV 1070
              ++P  I AHP +P Q AVGL++G V VIEP+E    W V
Sbjct: 1059 APIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1

 Score = 1002 bits (2591), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1130 (46%), Positives = 711/1130 (62%), Gaps = 76/1130 (6%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL EE F ES H LE+ES F+F+ K+F++ +L G+W+DVE YLS F
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD  + AKA+ IL +DL+ F+  NEEL+KE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L + R++E LSKY GD  +AR  M+ ELK++IEANP+ + KL FP+++  RLR LINQSL
Sbjct: 121  LQNFRENEQLSKY-GDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 233
            NWQH  C NP+PNPDI TLF DH C L     +  +      P  T   P+++       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQ---PVTTLTKPAAYPSLGPHV 236

Query: 234  ------------NFSSSMLTDSAVSFVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRIL 281
                          +S M   S  S V  ++  P       M +P++         + IL
Sbjct: 237  PFPPGPAAANAGALASWMAAASGASAVQAAVVTP-----ALMPQPQNQ--------MSIL 283

Query: 282  NEQASTVTYPGVSLKNIPDYS------PKSSLKKEMFQSFGET---SFSDFPKTVAQTLI 332
                +    PG+     PD+       P  S+++  + +  +    S  D P   A  L 
Sbjct: 284  KRPRTPPATPGIVDYQNPDHELMKRLRPAPSVEEVTYPAPRQQAPWSLEDLPTKAALALH 343

Query: 333  EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTAL 392
            +GS+   SM+F+P+Q+TLLLVG+  G+  LW++ + ++L  R FK+WD+  CS  F+  +
Sbjct: 344  QGSTV-TSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALI 402

Query: 393  VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 452
             ++  +SV RV WSPDG+ +GVA++KH++QLYA+ G +D RQ  EIDAHVG VNDLAF+ 
Sbjct: 403  AKETPISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFAN 462

Query: 453  PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 512
            P +Q+ VITCGDDK IKVWD V+G + ++FEGH APVYS+CPH KENI FIFS ++DGKI
Sbjct: 463  PNRQLCVITCGDDKLIKVWD-VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKI 521

Query: 513  KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 572
            KAWLYD+LG+RVDYDAPG  CTRM YSA+G RLFSCGTSK+G+SFLVEWNESEG+IKRTY
Sbjct: 522  KAWLYDNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTY 581

Query: 573  QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 632
            +  + Q     VV FDT+K+  LA G+D  IK WDMN + +LT+ DA GGLP  P + FN
Sbjct: 582  K--EFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFN 639

Query: 633  KNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 691
            K+G LLAV   +N  KIL  P    S+ A    +    +  V+    V GA +A+ +  V
Sbjct: 640  KDGNLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVD-FKAVPGAPVASVNCKV 698

Query: 692  NE-------------DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV-KANK 737
                           DP    K  I    +     +      PS+C    LP     + K
Sbjct: 699  ERGSPVRHSQMLNGVDPS---KSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTK 755

Query: 738  ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 797
            + +L Y N G  I AL SNG+  +W+W  N+   S +AT  V P+ +QP  G   M ND 
Sbjct: 756  VVQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSG-LLMTNDV 814

Query: 798  TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 857
            +  N + A PC ALSKND+Y+ SA+GG +SL+ +MTFK + T MPP P +T LAF+P DN
Sbjct: 815  SGVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDN 874

Query: 858  NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 917
            NVIAIGM+DSTI IYN R  EV SKL+GH KR+TGL FS ALNILVSSG DAQI  W +D
Sbjct: 875  NVIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSID 934

Query: 918  GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI 977
             W  +   ++Q P G    A  +T +QFH DQ R L+VHET LA+++A ++ C++QW P 
Sbjct: 935  TWEKRKSVAIQMPAG--KAANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQ 992

Query: 978  SSV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1035
             S+  PIS A ++C+ ++++T+F DG + + +A +L ++CRI  +AYL      L   P 
Sbjct: 993  DSLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQGNQGLS--PL 1050

Query: 1036 AIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTS 1085
             +AAHP  P QFAVGL +G V ++EP E    W ++PP E + + P++TS
Sbjct: 1051 VVAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAI-NSPSTTS 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 96.7 bits (239), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 146/331 (44%), Gaps = 44/331 (13%)

Query: 326  TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI--GA 383
            T  QTL    SS +S+ F P       V +  GD              +  K+WD   G 
Sbjct: 958  TCTQTLEGHGSSVLSVAFSPDGQR---VASGSGD--------------KTIKIWDTASGT 1000

Query: 384  CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG 443
            C     T  +   G SV  V +SPDG  +        ++++    G+   Q LE   H G
Sbjct: 1001 C-----TQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGT-CTQTLE--GHGG 1052

Query: 444  NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIH 501
             V  + FS   ++++  +  DD TIK+WDAV+G+ T + EGHG  V+S+   P  +    
Sbjct: 1053 WVQSVVFSPDGQRVA--SGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQR--- 1107

Query: 502  FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 561
             + S S+DG IK W   S       +  G     +A+S +G+R+     S   +  +  W
Sbjct: 1108 -VASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRV----ASGSIDGTIKIW 1162

Query: 562  NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 621
            + + G   +T +G       V  V F     ++ +   D  IKIWD        T++  G
Sbjct: 1163 DAASGTCTQTLEG---HGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHG 1219

Query: 622  GLPENPRICFNKNGTLLAVIANENRIKILET 652
            G  ++  + F+ +G  +A  +++N IKI +T
Sbjct: 1220 GWVQS--VAFSPDGQRVASGSSDNTIKIWDT 1248

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 138/626 (22%), Positives = 244/626 (38%), Gaps = 88/626 (14%)

Query: 350  LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 409
            +L  G++     LWD++SGQ              C   FK    R     V  VV+SP+ 
Sbjct: 920  MLASGSDDQTVRLWDISSGQ--------------CLKTFKGHTSR-----VRSVVFSPNS 960

Query: 410  SLLGVAYSKHIVQLYAYHGGSDARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI 468
             +L    S   V+L+    G    + L I   H G V  +AF+     ++  T   D+T+
Sbjct: 961  LMLASGSSDQTVRLWDISSG----ECLYIFQGHTGWVYSVAFNLDGSMLA--TGSGDQTV 1014

Query: 469  KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 528
            ++WD  +    Y F+GH + V S+   +   +  + S S D  ++ W  D       Y  
Sbjct: 1015 RLWDISSSQCFYIFQGHTSCVRSVVFSSDGAM--LASGSDDQTVRLW--DISSGNCLYTL 1070

Query: 529  PG-LGCTR-MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 586
             G   C R + +S +G  L S G     +  +  W+ S G    T QG     + V  + 
Sbjct: 1071 QGHTSCVRSVVFSPDGAMLASGGD----DQIVRLWDISSGNCLYTLQGYT---SWVRFLV 1123

Query: 587  FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 646
            F      +     D ++++WD++  + L T+   G       + F+ +G  LA  + +  
Sbjct: 1124 FSPNGVTLANGSSDQIVRLWDISSKKCLYTLQ--GHTNWVNAVAFSPDGATLASGSGDQT 1181

Query: 647  IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV------- 699
            +++ +   S  +      +  +  +  NP  +   +G ++ +V + E             
Sbjct: 1182 VRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGH 1241

Query: 700  ---------KPEISVEAENKSEVEKPLF-ARPSECQSLLLPSKVKANKISRLTYNNGGQA 749
                      P+ S+ A   S+    L+    S+C   L   +   N ++ + +N  G  
Sbjct: 1242 TSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKC---LHTFQGHTNWVNSVAFNPDGSM 1298

Query: 750  IFALASNGVHLMWR---------------WPRN-----DLTLSTEATTKVPPRLYQPRHG 789
            + + + +    +W                W  +     D T+    +     RL+    G
Sbjct: 1299 LASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSG 1358

Query: 790  PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTAT 848
                    T       V     S + A L S SG   + L+ + + K + T+   +    
Sbjct: 1359 ECLY----TFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVG 1414

Query: 849  SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 908
            S+ F+P D  ++A G DD T+ ++N  S E +  L GH   V  + FS    IL S   D
Sbjct: 1415 SIVFSP-DGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDD 1473

Query: 909  AQIFVWDVD-GWGIQTCRSLQTPDGV 933
              I +WDV  G  I+T +S +  +G+
Sbjct: 1474 ETIKLWDVKTGECIKTLKSEKIYEGM 1499

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 120/545 (22%), Positives = 224/545 (41%), Gaps = 35/545 (6%)

Query: 375  NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 434
            + +VW++ +  +L    + R     V  VV+SPDG +L    +   V+L++   G   + 
Sbjct: 665  HVRVWEVKSGKLLL---ICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIK- 720

Query: 435  QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 494
               +  H   V  +AF    + ++  +   DKTIK+WD   G+   +  GH   V   C 
Sbjct: 721  --TLTGHEHEVFSVAFHPDGETLA--SASGDKTIKLWDIQDGTCLQTLTGHTDWVR--CV 774

Query: 495  HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-MAYSANGRRLFSCGTSKE 553
                + + + S + D  IK W   S G  +       G  R +A+SA+G+ L     S  
Sbjct: 775  AFSPDGNTLASSAADHTIKLWDV-SQGKCLRTLKSHTGWVRSVAFSADGQTL----ASGS 829

Query: 554  GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 613
            G+  +  WN   G   +TY G     NSV  + +      +++   D  IK+WD      
Sbjct: 830  GDRTIKIWNYHTGECLKTYIG---HTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHIC 886

Query: 614  LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 673
            + T+   G   E   + F+ +G  LA ++ +  +++        + A    +D    ++ 
Sbjct: 887  IKTLH--GHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAF 944

Query: 674  NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 733
            +P   +  +G  + +V + +         IS    +   +    F+  S  Q+L   S  
Sbjct: 945  SPDRQILASGSNDKTVKLWD---WQTGKYISSLEGHTDFIYGIAFSPDS--QTLASASTD 999

Query: 734  KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 793
             + ++  ++     Q I    ++ V+ +   P+  +  +  A   V  +L+    G    
Sbjct: 1000 SSVRLWNISTGQCFQ-ILLEHTDWVYAVVFHPQGKIIATGSADCTV--KLWNISTGQCL- 1055

Query: 794  VNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTATSLAF 852
                T S   + +   A S +   L SAS    + L+   T + +  +   S    S  F
Sbjct: 1056 ---KTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIF 1112

Query: 853  NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 912
            +P +  +IA    D T+ I++ +  + +  L GH+  V  + FS    IL S+  D  + 
Sbjct: 1113 SP-NGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVR 1171

Query: 913  VWDVD 917
            +WDV+
Sbjct: 1172 IWDVN 1176

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 142/630 (22%), Positives = 254/630 (40%), Gaps = 128/630 (20%)

Query: 399  SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
            +V  V +SPDG  +    S   ++L+    G+  +    I  H   VN++ FS   K ++
Sbjct: 1115 AVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLK---TITGHEQTVNNVYFSPDGKNLA 1171

Query: 459  VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAW- 515
              +   D +IK+WD  +G    +  GH A V ++   P  +     I + S D  +K W 
Sbjct: 1172 --SASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQT----IAAGSEDKTVKLWH 1225

Query: 516  -----LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 570
                 L  +L    D+         +++S +G+ L S    K     +  W  ++G + +
Sbjct: 1226 RQDGKLLKTLNGHQDW------VNSLSFSPDGKTLASASADKT----IKLWRIADGKLVK 1275

Query: 571  TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 630
            T +G    ++SV  V+F +    I +A  D+ IK+W+ + ++L T     GG+     + 
Sbjct: 1276 TLKG---HNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA---VN 1329

Query: 631  FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI---STVTGAGIANG 687
            F  +  ++A  + +N I++ + P  + ++   VL+ N    +V+ +   S +  AG A+G
Sbjct: 1330 FLPDSNIIASASLDNTIRLWQRPLISPLE---VLAGNSGVYAVSFLHDGSIIATAG-ADG 1385

Query: 688  SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL--LPSKVKANKISRLTYNN 745
            ++ +                              S+  SLL  LP               
Sbjct: 1386 NIQLWH----------------------------SQDGSLLKTLP--------------- 1402

Query: 746  GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 805
            G +AI+ ++          P+ DL  S  A   V  ++++ R G         D+     
Sbjct: 1403 GNKAIYGISFT--------PQGDLIASANADKTV--KIWRVRDGKALKTLIGHDNE---- 1448

Query: 806  VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 864
            V     S +   L SAS    + L+ V   K   T+   +     ++F+P D  +IA   
Sbjct: 1449 VNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSP-DGKIIASAS 1507

Query: 865  DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV-DGWGIQT 923
             D TI ++++ S  +I  L  H+  V  + F+   ++L S+  D  + +W   DG  + T
Sbjct: 1508 ADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSHDGHLLHT 1567

Query: 924  --------CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF 975
                      S  +PDG    + SE       D+T  +   + HL       LT L    
Sbjct: 1568 FSGHSNVVYSSSFSPDGRYIASASE-------DKTVKIWQIDGHL-------LTTL---- 1609

Query: 976  PISSVPISQATFSCDCRMVFTSFVDGTLSI 1005
            P     +  A FS D + + +  +D T  I
Sbjct: 1610 PQHQAGVMSAIFSPDGKTLISGSLDTTTKI 1639

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 22/275 (8%)

Query: 376 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 435
             VWD+ +   L       D    V  V +SPDG+LL        V+L+     + A ++
Sbjct: 483 IHVWDVASGDELHTLEGHTD---WVRAVAFSPDGALLASGSDDATVRLWDV---AAAEER 536

Query: 436 LEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 494
              + H   V D+AFS      S++  G  D T ++W+  TG+     +GH   VY++  
Sbjct: 537 AVFEGHTHYVLDIAFS---PDGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVA- 592

Query: 495 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 554
               +   + S S DG I+ W   +   R    AP      +A+S +G  L         
Sbjct: 593 -FSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHG-----S 646

Query: 555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 614
           +S +  W+ + G    T++G     + V  V F      + +  DD  I++WD+   +  
Sbjct: 647 DSTVHLWDVASGEALHTFEG---HTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEH 703

Query: 615 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 649
           TT++ G   P +  + F+  GT LA  + +  I+I
Sbjct: 704 TTLE-GHTEPVH-SVAFHPEGTTLASASEDGTIRI 736

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1093
356550630	1132	PREDICTED: topless-related protein 1-lik	0.958	0.925	0.556	0.0
224141931	1109	predicted protein [Populus trichocarpa]	0.974	0.960	0.585	0.0
357455303	1112	WD repeat-containing protein, putative [	0.962	0.946	0.558	0.0
357455301	1134	WD repeat-containing protein, putative [	0.958	0.924	0.549	0.0
356526242	1133	PREDICTED: protein TOPLESS-like [Glycine	0.957	0.924	0.551	0.0
357455305	1149	WD repeat-containing protein, putative [	0.958	0.912	0.549	0.0
357458875	1138	WD repeat-containing protein, putative [	0.960	0.922	0.553	0.0
356554802	1136	PREDICTED: topless-related protein 1-lik	0.969	0.933	0.550	0.0
297839887	1120	hypothetical protein ARALYDRAFT_895943 [	0.958	0.935	0.545	0.0
24461849	1127	CTV.2 [Citrus trifoliata]	0.955	0.926	0.553	0.0

>gi|356550630|ref|XP_003543688.1| PREDICTED: topless-related protein 1-like [Glycine max]

 Score = 1217 bits (3148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/1138 (55%), Positives = 788/1138 (69%), Gaps = 90/1138 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKVAV----------TMDRPE-D 268
            Q T +P     + W  + + +   AVS  A+ L  P+   A+          ++D P  D
Sbjct: 240  QPTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGD 299

Query: 269  SDILSEKS-PVRILNE-----QASTVTYPGVSLK---NIPDYSPKSSLKKEMFQSFGETS 319
            SD +S+++ P+ + +E        + T+PG       N PD                   
Sbjct: 300  SDHVSKRTRPIGMSDEVNLPVNVLSATFPGHGHGQAFNAPD------------------- 340

Query: 320  FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW 379
              D PKT  ++L +GSS PMSMDFHPVQ TLLLVGTNVGD  LW+V S ++L +RNFKVW
Sbjct: 341  --DLPKTAMRSLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVW 397

Query: 380  DIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID 439
            D+ ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG D  Q LEID
Sbjct: 398  DLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVGQHLEID 457

Query: 440  AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 499
            AHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KEN
Sbjct: 458  AHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSICPHYKEN 517

Query: 500  IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 559
            I FIFS ++DGKIKAWLYD+LG+RVDY+APG  CT MAYSA+G RLFSCGTSKEGES +V
Sbjct: 518  IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIV 577

Query: 560  EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 619
            EWNESEGA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT+DA
Sbjct: 578  EWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDA 635

Query: 620  GGGLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKL 671
             GGLP +PRI FNK+G LLAV ANEN IKIL   +         NS+      S+ + K 
Sbjct: 636  DGGLPASPRIRFNKDGALLAVSANENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKP 695

Query: 672  SVNPISTVTG----------AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLF 718
            ++NPIS              A       ++N D +   DVKP IS E+ +KS++ K    
Sbjct: 696  TINPISAAAAAATSAALAERASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEI 755

Query: 719  ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 778
              PS+C+SL LP  V+ NKISRL Y N G AI ALASN +HL+W+W RND   + +AT  
Sbjct: 756  NEPSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTGKATAS 815

Query: 779  VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL 838
            V P+L+QP  G   M ND TD+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ 
Sbjct: 816  VQPQLWQPSSG-ILMTNDITDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT 874

Query: 839  TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 898
            T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS  
Sbjct: 875  TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHV 934

Query: 899  LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 958
            LN+LVSSG DAQI VW+ DGW  Q  R LQ P G    A ++T +QFH+DQ RFL+VHET
Sbjct: 935  LNVLVSSGADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHET 994

Query: 959  HLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1017
             LAIYEA +L CLKQWFP  SS PIS ATFSCD ++++ SF+D T+ +   SNL ++CRI
Sbjct: 995  QLAIYEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVLSVSNLRLRCRI 1054

Query: 1018 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1075
              +AYL  + S  +V P  IAAHP +P QFAVGL++G V+V EP+E    W V PP E
Sbjct: 1055 NPSAYLSASVSS-NVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPHESEGKWGVPPPIE 1111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141931|ref|XP_002324314.1| predicted protein [Populus trichocarpa] gi|222865748|gb|EEF02879.1| predicted protein [Populus trichocarpa]

 Score = 1216 bits (3147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1104 (58%), Positives = 785/1104 (71%), Gaps = 39/1104 (3%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            M+ L KDLV LI QFL+EEGF E+A MLERES +YF MKFFEDMI  G W++ E+YLS F
Sbjct: 1    MAALCKDLVLLISQFLDEEGFKETARMLERESGYYFSMKFFEDMIRSGNWDEAERYLSCF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TK+DDNRYSTKIYFEIRKQ F E LD  + +KAL+IL KDLK FAP NEEL KE+  LLT
Sbjct: 61   TKLDDNRYSTKIYFEIRKQKFLEVLDNDERSKALDILMKDLKAFAPDNEELLKEMTLLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++IRDHE LS  Y DA SARK MM+ELK++IEANP+L+ KL+FP+I   RLRRLINQSL
Sbjct: 121  LNNIRDHESLS-MYSDAESARKVMMVELKKVIEANPLLRDKLEFPNIANHRLRRLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQETD---FSGQSSESNALPPQTTQ----SPSSW 233
            NWQH+HCA PQPNPDI TLFVDH+C    +D   FS  +S+SN LP QTT     + S+ 
Sbjct: 180  NWQHMHCAYPQPNPDIRTLFVDHICVPIPSDDHLFSA-ASDSNPLPSQTTSMLVSTSSAS 238

Query: 234  NFSSSMLTDSAVSFVALSLSDPTNKVAVTMDRPEDSDILS-------EKSPVRILNEQAS 286
            N +SS    S++S  ALSL  PTN +   +   E   +LS         + + +L E  +
Sbjct: 239  NSTSSSEAHSSISSEALSLGVPTN-IGSFIVVIEKKLLLSLTIYSMFVAAMIEVL-EDNT 296

Query: 287  TVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS-----DFPKTVAQTLIEGSSSPMSM 341
            TV   G+    I +    S+    +F  F     S     D PK V + L EGSS P SM
Sbjct: 297  TVNDSGIPKNRIVNLKRPSNEASLIFHFFLLKHCSVNISDDLPKNVFRILNEGSS-PTSM 355

Query: 342  DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 401
            DFHP + T+LLVGT VGD GLW+V+SG+ L  RNFKVWDI ACSM+FK  L++DP VSVN
Sbjct: 356  DFHPEKQTVLLVGTTVGDIGLWEVSSGESLLSRNFKVWDIAACSMMFKATLLKDPSVSVN 415

Query: 402  RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT 461
            RV WSP+G L GVAYSKH+VQ+Y+Y+   DARQQLEIDAHVG VNDL FSAP KQ+ VIT
Sbjct: 416  RVAWSPEGGLFGVAYSKHLVQIYSYNEAKDARQQLEIDAHVGGVNDLTFSAPEKQLLVIT 475

Query: 462  CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 521
            CGDDK +K WDA  G + Y+FEGH APVYSLCP++K N+HF+F+ SV+G IK WLYD+LG
Sbjct: 476  CGDDKIVKAWDATDGVKMYTFEGHDAPVYSLCPYSKGNVHFVFATSVNGNIKVWLYDNLG 535

Query: 522  ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 581
            ARVDYDAPGLGCT MAYS + RRLFSCGTS  GESFLVEW++SEGAIKRTY G  LQ NS
Sbjct: 536  ARVDYDAPGLGCTSMAYSGD-RRLFSCGTSGSGESFLVEWDDSEGAIKRTYLG--LQKNS 592

Query: 582  VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 641
             SVV FD  K+Q+LAAGD+HVIKIWDMNK++L TTIDA GGLP NP + FNK GTLLAV 
Sbjct: 593  SSVVQFDIMKNQVLAAGDEHVIKIWDMNKIELFTTIDAEGGLPANPCVRFNKEGTLLAVS 652

Query: 642  ANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS------VNE 693
            AN+N+IKIL    S  +       L D+ R +S   IS    A  A+ +V+      +  
Sbjct: 653  ANDNKIKILAKDGSLQSLHTTENCLDDDFRLVS-EAISKGACAQDADEAVAKQCFNLLQN 711

Query: 694  DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 753
               + VK +I+ +              PS+CQ L LPS +KANKISRL YNN G +I AL
Sbjct: 712  GNLKAVKSKITGKDTKSKSGRLIELNSPSQCQILRLPSHMKANKISRLIYNNAGNSILAL 771

Query: 754  ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 813
             SN  HL W+WP+ND  LS  A  KV P+L+QPR     M ND T SN +E VPCFALS+
Sbjct: 772  TSNATHLYWKWPQNDFDLSDTAAAKVSPQLWQPRSYSGLMTNDLTGSNPEETVPCFALSR 831

Query: 814  NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 873
            ND+YL S+SGG ISLY ++ FKT+L+IM P P AT +AF+P DNN++AIG D+STILIYN
Sbjct: 832  NDSYLMSSSGGRISLYNLLKFKTMLSIMQPPPAATCIAFHPQDNNILAIGRDNSTILIYN 891

Query: 874  ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV 933
             RS++VI+ LEGHSKRV+GL FS+ LN+LVSSG DAQIFVW+V+GW  Q    LQ PDG 
Sbjct: 892  VRSAKVITILEGHSKRVSGLAFSNDLNLLVSSGADAQIFVWNVEGWYKQRSTFLQIPDGR 951

Query: 934  MTLAPS-ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDC 991
            +  + S +THIQFH++QT FL VHETHLAIYEA +L C+KQW P   + PIS ATFSCD 
Sbjct: 952  IPFSLSTDTHIQFHQNQTEFLSVHETHLAIYEARKLECVKQWIPGDFATPISHATFSCDG 1011

Query: 992  RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1051
            +MV+ SF+DG +SI +AS+ ++ C+I  TAYL PT+S L VYP AIAAHP +P QFAVGL
Sbjct: 1012 QMVYASFLDGLVSIFDASDFQLYCQINPTAYLFPTSS-LGVYPIAIAAHPQEPNQFAVGL 1070

Query: 1052 TNGEVYVIEPNEPGDTWAVLPPDE 1075
            T+G V V EP      W++L  DE
Sbjct: 1071 TDGGVIVFEPPISAGKWSMLTADE 1094

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455303|ref|XP_003597932.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486980|gb|AES68183.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1199 bits (3102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1114 (55%), Positives = 767/1114 (68%), Gaps = 62/1114 (5%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSML 240
            NWQH  C NP+PNPDI TLFVDH C        GQ        P   ++PS  N      
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSC--------GQ--------PNGARAPSPANMPLLGS 223

Query: 241  TDSAVSFVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPD 300
                  F  L    P       +  P  +  +S  +PV   +         GV   ++PD
Sbjct: 224  LPKVGGFPPLGAHGPFQPTPAPVPMPL-AGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPD 282

Query: 301  YSPKSSLKKEM--------------FQSFGE----TSFSDFPKTVAQTLIEGSSSPMSMD 342
            +  K +    M              F   G      S  D PKTV +TL +GSS PMSMD
Sbjct: 283  HISKRTRPIGMSDEGNLPVNVLSATFPGHGHGQAFNSPDDLPKTVLRTLNQGSS-PMSMD 341

Query: 343  FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 402
            FHPVQ TLLLVGTNV D GLW++ S ++L +RNFKVWD+ ACSM F+ ALV+DP VSVNR
Sbjct: 342  FHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFKVWDLSACSMPFQAALVKDPAVSVNR 401

Query: 403  VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 462
            V WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG VNDLAFS P KQ+ VITC
Sbjct: 402  VTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITC 461

Query: 463  GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 522
            GDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+LG+
Sbjct: 462  GDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGS 521

Query: 523  RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 582
            RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES +VEWNESEGA+KRTYQG + +  S+
Sbjct: 522  RVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKR--SL 579

Query: 583  SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 642
             VV FDT K++ LAAGDD  IK WDM+ +QLLTT+DA GGLP +PRI FNK G+LLAV A
Sbjct: 580  GVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKEGSLLAVSA 639

Query: 643  NENRIKI---------LETPESNSVDAAGVLSDNLRKLSVNPI--------STVTGAGIA 685
            NEN IKI         L + E++S DA+   S+ + K  +NP+        + +  A   
Sbjct: 640  NENGIKILANGDGIRLLRSLENSSYDASRT-SEAMTKPIINPMSVATAATSAALERASSV 698

Query: 686  NGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKISRLT 742
                 +N D +   D+KP IS E+ +KS++ K      PS C+SL LP   +  KISRL 
Sbjct: 699  AAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTEINEPSHCRSLKLPENARVTKISRLI 758

Query: 743  YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 802
            Y N G AI ALASN +HL+W+W RND   S +AT  VPP+L+QP  G   M ND  D+N+
Sbjct: 759  YTNSGNAILALASNAIHLLWKWQRNDRNSSGKATASVPPQLWQPSSG-ILMTNDINDNNT 817

Query: 803  QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 862
            ++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+IAI
Sbjct: 818  EDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAI 877

Query: 863  GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 922
            GMDDS+I IYN R  EV SKL+GH+KR+TGL FS  LN+LVSSG D QIFVW+ DGW  Q
Sbjct: 878  GMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADGQIFVWNTDGWEKQ 937

Query: 923  TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVP 981
              R LQ P G    A ++T +QFH+DQ RFL+VHET LAIYEA +L CLKQWFP  ++ P
Sbjct: 938  KNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHETQLAIYEATKLECLKQWFPRDAAAP 997

Query: 982  ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHP 1041
            IS ATFSCD  ++F SF+D T+ +  ASNL ++CRI  +AYL    S  ++ P  IAAHP
Sbjct: 998  ISHATFSCDSNLIFASFLDATICVFSASNLRLRCRINPSAYLSANVSSSNIQPLVIAAHP 1057

Query: 1042 LKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1075
             +P QFAVGL++G V+V EP E    W V PP E
Sbjct: 1058 HEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1091

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455301|ref|XP_003597931.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486979|gb|AES68182.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1198 bits (3100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1140 (54%), Positives = 780/1140 (68%), Gaps = 92/1140 (8%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSK YGD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   +    PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 239

Query: 225  QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKVAVTM 263
            Q T +P     +  M   + V+  ++S                      + PTN    ++
Sbjct: 240  QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNP---SV 296

Query: 264  DRPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFG 316
            D P  DSD +S+++ P+ + +E        + T+PG                    Q+F 
Sbjct: 297  DYPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF- 339

Query: 317  ETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF 376
              S  D PKTV +TL +G SSPMSMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNF
Sbjct: 340  -NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNF 397

Query: 377  KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 436
            KVWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ L
Sbjct: 398  KVWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHL 457

Query: 437  EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 496
            EIDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH 
Sbjct: 458  EIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHY 517

Query: 497  KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 556
            KENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES
Sbjct: 518  KENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGES 577

Query: 557  FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
             +VEWNESEGA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT
Sbjct: 578  SIVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTT 635

Query: 617  IDAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDN 667
            +DA GGLP +PRI FNK G+LLAV ANEN IKI         L + E++S DA+   S+ 
Sbjct: 636  VDADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEA 694

Query: 668  LRKLSVNPI--------STVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-P 716
            + K  +NP+        + +  A        +N D +   D+KP IS E+ +KS++ K  
Sbjct: 695  MTKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLT 754

Query: 717  LFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 776
                PS C+SL LP   +  KISRL Y N G AI ALASN +HL+W+W RND   S +AT
Sbjct: 755  EINEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKAT 814

Query: 777  TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT 836
              VPP+L+QP  G   M ND  D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT
Sbjct: 815  ASVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKT 873

Query: 837  ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 896
            + T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS
Sbjct: 874  MTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFS 933

Query: 897  DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 956
              LN+LVSSG D QIFVW+ DGW  Q  R LQ P G    A ++T +QFH+DQ RFL+VH
Sbjct: 934  HVLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVH 993

Query: 957  ETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1015
            ET LAIYEA +L CLKQWFP  ++ PIS ATFSCD  ++F SF+D T+ +  ASNL ++C
Sbjct: 994  ETQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRLRC 1053

Query: 1016 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1075
            RI  +AYL    S  ++ P  IAAHP +P QFAVGL++G V+V EP E    W V PP E
Sbjct: 1054 RINPSAYLSANVSSSNIQPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1113

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max]

 Score = 1197 bits (3098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/1141 (55%), Positives = 788/1141 (69%), Gaps = 94/1141 (8%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFV-ALSLSDPTNKVAV----------TMDRPE- 267
            Q T +P     + W  + + +  +AVS   A+ L  P+   A+          ++D P  
Sbjct: 240  QPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAALKHPRTPPTNPSVDYPSG 299

Query: 268  DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS 321
            DSD +++++ P+ I +E        + T+PG                 +  Q+F      
Sbjct: 300  DSDHVAKRTRPMGISDEVNLPVNVLSATFPG---------------HGQHSQAFNAPD-- 342

Query: 322  DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI 381
            D PKTV +TL +GSS PMSMDFHP+Q +LLLVGT+VGD  LW+V S ++L  RNFKVWD+
Sbjct: 343  DIPKTVVRTLNQGSS-PMSMDFHPMQQSLLLVGTHVGDIALWEVGSRERLVSRNFKVWDL 401

Query: 382  GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH 441
             ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAH
Sbjct: 402  SACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAH 461

Query: 442  VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 501
            VG VNDLAFS P KQ+ VITCGDDKTIKVWDA +G++ Y+FEGH APVYS+CPH KENI 
Sbjct: 462  VGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQ 521

Query: 502  FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 561
            FIFS ++DGKIKAWLYD+LG+RVDY+APG  CT MAYSA+G RLFSCGTSK+GES +VEW
Sbjct: 522  FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEW 581

Query: 562  NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 621
            NESEGA+KRTYQG   +  S+ VV FDT K++ LAAGDD  IK WDM+ VQLLTT+DA G
Sbjct: 582  NESEGAVKRTYQG--FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADG 639

Query: 622  GLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSV 673
            GLP +PRI FNK+GTLLAV ANEN IKIL   +         NS+  A   S+ L K ++
Sbjct: 640  GLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLLRTLENSLYEASRASEALTKPTI 699

Query: 674  NPI-----------------STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK- 715
            NPI                 S V  AG+   + ++      DVKP IS E+ +KS++ K 
Sbjct: 700  NPISAAAAAATSAALAERASSVVAIAGMNGDTRNLG-----DVKPRISEESNDKSKIWKL 754

Query: 716  PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 775
                  S+C+SL LP  V+  KISRL Y N G AI ALASN +HL+W+W RN+   S +A
Sbjct: 755  TEINEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKA 814

Query: 776  TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 835
            T  + P+L+QP  G   M ND  DSN ++AVPCFALSKND+Y+ SASGG ISL+ +MTFK
Sbjct: 815  TATLQPQLWQPSSG-ILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK 873

Query: 836  TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 895
            T+ T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL F
Sbjct: 874  TMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAF 933

Query: 896  SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 955
            S  LN+LVSSG DAQI VW+ DGW  Q  R LQ P G    A S+T +QFH+DQ +FL+V
Sbjct: 934  SHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVV 993

Query: 956  HETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1014
            HET LAIYEA +L  LKQWFP  SS PIS ATFSCD ++VF SF+D T+ +  ASNL ++
Sbjct: 994  HETQLAIYEATKLEGLKQWFPRDSSAPISYATFSCDSQLVFASFLDATICVFSASNLRLR 1053

Query: 1015 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1074
            CRI  ++YL P +   ++ P  IAAHP +P QFA+GL++G V+V EP E    W V PP 
Sbjct: 1054 CRINPSSYL-PASVSSNIQPLVIAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPI 1112

Query: 1075 E 1075
            E
Sbjct: 1113 E 1113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455305|ref|XP_003597933.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486981|gb|AES68184.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1197 bits (3098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1140 (54%), Positives = 780/1140 (68%), Gaps = 92/1140 (8%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 16   MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 75

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+  NEELFKE+ QLLT
Sbjct: 76   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 135

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSK YGD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 136  LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 194

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   +    PP       
Sbjct: 195  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 254

Query: 225  QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKVAVTM 263
            Q T +P     +  M   + V+  ++S                      + PTN    ++
Sbjct: 255  QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNP---SV 311

Query: 264  DRPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFG 316
            D P  DSD +S+++ P+ + +E        + T+PG                    Q+F 
Sbjct: 312  DYPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF- 354

Query: 317  ETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF 376
              S  D PKTV +TL +G SSPMSMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNF
Sbjct: 355  -NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNF 412

Query: 377  KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 436
            KVWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ L
Sbjct: 413  KVWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHL 472

Query: 437  EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 496
            EIDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH 
Sbjct: 473  EIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHY 532

Query: 497  KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 556
            KENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES
Sbjct: 533  KENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGES 592

Query: 557  FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
             +VEWNESEGA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT
Sbjct: 593  SIVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTT 650

Query: 617  IDAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDN 667
            +DA GGLP +PRI FNK G+LLAV ANEN IKI         L + E++S DA+   S+ 
Sbjct: 651  VDADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEA 709

Query: 668  LRKLSVNPI--------STVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-P 716
            + K  +NP+        + +  A        +N D +   D+KP IS E+ +KS++ K  
Sbjct: 710  MTKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLT 769

Query: 717  LFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 776
                PS C+SL LP   +  KISRL Y N G AI ALASN +HL+W+W RND   S +AT
Sbjct: 770  EINEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKAT 829

Query: 777  TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT 836
              VPP+L+QP  G   M ND  D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT
Sbjct: 830  ASVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKT 888

Query: 837  ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 896
            + T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS
Sbjct: 889  MTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFS 948

Query: 897  DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 956
              LN+LVSSG D QIFVW+ DGW  Q  R LQ P G    A ++T +QFH+DQ RFL+VH
Sbjct: 949  HVLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVH 1008

Query: 957  ETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1015
            ET LAIYEA +L CLKQWFP  ++ PIS ATFSCD  ++F SF+D T+ +  ASNL ++C
Sbjct: 1009 ETQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRLRC 1068

Query: 1016 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1075
            RI  +AYL    S  ++ P  IAAHP +P QFAVGL++G V+V EP E    W V PP E
Sbjct: 1069 RINPSAYLSANVSSSNIQPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1128

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458875|ref|XP_003599718.1| WD repeat-containing protein, putative [Medicago truncatula] gi|357468121|ref|XP_003604345.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355488766|gb|AES69969.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355505400|gb|AES86542.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1194 bits (3089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/1140 (55%), Positives = 784/1140 (68%), Gaps = 90/1140 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPPQTTQSP- 230
            NWQH  C NP+PNPDI TLFVDH C             +   G   ++   PP     P 
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPF 239

Query: 231  -----------SSWNFSSSMLTDSAVSFV-ALSLSDPTNKVAV----------TMDRPE- 267
                       + W  + + +  +AVS   A+ L  P+   A+          ++D P  
Sbjct: 240  QPNPAAVPTQLAGWMSNPTTVAHAAVSGAGAIGLGAPSMPGALKHPRTPPINPSVDYPSG 299

Query: 268  DSDILSEKS-PVRILNEQASTV-----TYPGVSLK---NIPDYSPKSSLKKEMFQSFGET 318
            DSD +++++ P+ I +E    V     T+PG       N PD  P               
Sbjct: 300  DSDHVAKRTRPMGITDEVNLPVNVLSGTFPGHGHSQAFNAPDDLP--------------- 344

Query: 319  SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKV 378
                 PKTV +TL +GSS PMSMDFHPVQ +LLLVGTNVG   LW+V S +KL  RNFKV
Sbjct: 345  ----LPKTVTRTLNQGSS-PMSMDFHPVQQSLLLVGTNVGGIALWEVGSREKLVSRNFKV 399

Query: 379  WDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI 438
            WD+ ACSM F+ ALV+DP VSVNRV+WSPDG+L GVAYS+HIVQ+Y+YH G D RQ LEI
Sbjct: 400  WDLSACSMPFQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHTGDDVRQHLEI 459

Query: 439  DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 498
            DAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDAV+G++ Y+FEGH APVYS+CPH KE
Sbjct: 460  DAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAVSGAKQYTFEGHEAPVYSVCPHYKE 519

Query: 499  NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 558
            NI FIFS ++DGKIKAWLYD+LG+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES +
Sbjct: 520  NIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSI 579

Query: 559  VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 618
            VEWNESEGA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT+D
Sbjct: 580  VEWNESEGAVKRTYQGFRKR--SMGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVD 637

Query: 619  AGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNLR 669
            A GGLP +PRI FNK+GTLLAV AN+N IKI         L T E+NS+  A   S+ + 
Sbjct: 638  ADGGLPASPRIRFNKDGTLLAVSANDNGIKIVANADGIRLLRTLENNSMYDASRASE-MA 696

Query: 670  KLSVNPISTVTG---------AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 717
            K ++N +S+            A        +N D +   DVKP IS EA +KS++ K   
Sbjct: 697  KPTINSMSSAAAATSAALAERASSVAAIAGMNGDTRSMGDVKPRISEEANDKSKIWKLTE 756

Query: 718  FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 777
               PS C+SL LP  V+ NKISRL Y N G AI ALASN +HL+W+WPRN+   S +A  
Sbjct: 757  INEPSHCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANA 816

Query: 778  KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 837
             VP +L+QP  G   M ND  DSN +++VPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 817  SVPAQLWQPSSG-ILMTNDIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 875

Query: 838  LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 897
             T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS 
Sbjct: 876  TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 935

Query: 898  ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 957
             LN+LVSSG DAQI VW+ DGW  Q  R LQ P G    A S+T +QFH+DQ +FL+VHE
Sbjct: 936  VLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHE 995

Query: 958  THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1016
            T LAI+EA +L CLKQW P  SS PIS ATFSCD ++++ SF+D T+ +  ASNL ++CR
Sbjct: 996  TQLAIFEATKLECLKQWAPRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCR 1055

Query: 1017 ILSTAYLRPTTSC-LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1075
            I   AYL  + S   +V P  IAAHP +  QFAVGL++G V+V EP E    W V PP+E
Sbjct: 1056 INPPAYLPASVSSNSNVQPLVIAAHPHEANQFAVGLSDGGVHVFEPLESEGKWGVPPPNE 1115

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554802|ref|XP_003545731.1| PREDICTED: topless-related protein 1-like isoform 1 [Glycine max]

 Score = 1194 bits (3088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1130 (55%), Positives = 776/1130 (68%), Gaps = 70/1130 (6%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FE+ KQ + EALD HD +KA+ IL KDLK FA  N+ELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEVMKQKYLEALDKHDRSKAVEILVKDLKVFATFNDELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY  D  SAR  M++ELK++IEANP+   KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSKYC-DTKSARAIMLVELKKLIEANPLFHDKLQFPNLKSSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC-QLQETD--------FSGQSSESNALPPQTTQSP- 230
            NWQH  C NP+PNPDI TLFVDH C QL              G   ++   PP     P 
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQLNGAPAPSPANNLLLGSLPKAGGFPPLGAHGPF 239

Query: 231  -----------SSWNFSSSMLTDSAVSFVALSLSDPTNKVAV----------TMDRPE-D 268
                       + W  + + +    VS  A+ L  P+   A+          ++D P  D
Sbjct: 240  QPSPAPVPTPLAGWMSNPTTVAHPEVSGGAIGLGVPSIPAALKHPRTPPTYPSVDYPSGD 299

Query: 269  SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 327
            SD +S+++ P+ + +E    V     +        P         Q+F      D PKT 
Sbjct: 300  SDHVSKRTRPMGMSDEVNLPVNVLSATF-------PGHGHGHGHGQAFNAP--DDLPKTA 350

Query: 328  AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML 387
             +TL +G SSPMSMDFHPVQ TLLLVGTNVGD  LW+V S ++L +RNFKVWD+ ACSM 
Sbjct: 351  MRTLNQG-SSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMP 409

Query: 388  FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 447
            F+ ALV+DPGVSV RV+WSPDG+L GVAYS+HIVQ+Y+YH G D +Q LEIDAHVG VND
Sbjct: 410  FQAALVKDPGVSVYRVIWSPDGALFGVAYSRHIVQIYSYHSGDDVQQHLEIDAHVGGVND 469

Query: 448  LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 507
            LAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KENI FIFS +
Sbjct: 470  LAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTA 529

Query: 508  VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 567
            +DGKIKAWLYD+LG+RVDY+APG  CT MAYSA+G RLFSCGTSK+ ES +VEWNESEGA
Sbjct: 530  LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDAESSIVEWNESEGA 589

Query: 568  IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 627
            +KRTYQG   +  S+  V FDT K++ LAAGDD  IK WDM+ +QLLTT+DA GGLP +P
Sbjct: 590  VKRTYQG--FRKRSLGFVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPGSP 647

Query: 628  RICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPISTV 679
            RI FNK+G LLAV A EN IKIL   +         NS+      S+ + K ++NPIS  
Sbjct: 648  RIRFNKDGALLAVSAKENGIKILANADGIRLLRTLENSLYDTSRTSEVMTKPTINPISAA 707

Query: 680  TGAGIAN----------GSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQS 726
              A  +           G  ++N D +   DVKP IS E+ +KS++ K      PS+C+S
Sbjct: 708  AAAATSAALGERALSVVGINAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRS 767

Query: 727  LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 786
            L LP  V+ NKISRL Y N G AI ALASN +HL+W+W RND   + +A+  V P+L+QP
Sbjct: 768  LKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTVKASASVQPQLWQP 827

Query: 787  RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT 846
              G   M ND TDSN+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P 
Sbjct: 828  SSG-ILMTNDITDSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPA 886

Query: 847  ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 906
            A  LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS  LN+LVSSG
Sbjct: 887  ANFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSG 946

Query: 907  GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 966
             DAQI VW+ DGW  Q  R LQ P G    A ++T +QFH+DQ RFL+VHET LAIYEA 
Sbjct: 947  ADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEAT 1006

Query: 967  ELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1025
            +L CLKQWFP  SS PIS ATFSCD ++++ SF+D T+ +   SNL +QCRI  +AYL  
Sbjct: 1007 KLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVFSVSNLRLQCRINPSAYLSA 1066

Query: 1026 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1075
            + S  +V P  IAAHP +P QFAVGL++G V+V EP E    W V PP E
Sbjct: 1067 SVSS-NVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIE 1115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839887|ref|XP_002887825.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata] gi|297333666|gb|EFH64084.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata]

 Score = 1191 bits (3082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/1124 (54%), Positives = 778/1124 (69%), Gaps = 76/1124 (6%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD  KA+ IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP+++  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C+L               G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAGGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKVAV----------TMDRPE-D 268
            Q T SP     + W  S S +   AVS  A++L  P+ + A+           +D P  D
Sbjct: 240  QPTPSPVPTPLAGWMSSPSSVPHPAVSGGAIALGAPSIQAALKHPRTPPTNSAVDYPSGD 299

Query: 269  SDILSEKS-PVRILNEQASTV-----TYPGVSLKN-----IPDYSPKSSLKKEMFQSFGE 317
            SD +S+++ P+ I +E +  V     T+PG +  +     +PD                 
Sbjct: 300  SDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKVPD----------------- 342

Query: 318  TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 377
                D PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  + FK
Sbjct: 343  ----DLPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFK 397

Query: 378  VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 437
            VWD+  CSM  + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LE
Sbjct: 398  VWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLE 457

Query: 438  IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 497
            IDAHVG VND+AFS P KQ+ V TCGDDKTIKVWDA TG + ++FEGH APVYS+CPH K
Sbjct: 458  IDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRHTFEGHEAPVYSICPHYK 517

Query: 498  ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 557
            ENI FIFS ++DGKIKAWLYD++G+RVDY+APG  CT MAYSA+G RLFSCGTSK+GESF
Sbjct: 518  ENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESF 577

Query: 558  LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 617
            +VEWNESEGA+KRTYQG      S+ VV FDT K++ LAAGDD  IK WDM+ +QLLT I
Sbjct: 578  IVEWNESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAI 635

Query: 618  DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPI 676
            DA GGL  +PRI FNK G+LLAV AN+N IK++   +    +     LS    K ++N I
Sbjct: 636  DADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSI 695

Query: 677  STVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKV 733
                          +N D +   DVKP I+ E+ +KS+V K      PS+C+SL LP  +
Sbjct: 696  PVAERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTELGEPSQCRSLRLPENM 755

Query: 734  KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 793
            +A KISRL + N G AI ALASN +HL+W+W RND   + +AT  VPP+ +QP  G   M
Sbjct: 756  RATKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASVPPQQWQPASG-ILM 814

Query: 794  VNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 853
             ND  ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+
Sbjct: 815  TNDVVETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH 874

Query: 854  PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV 913
            P DNN+IAIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ V
Sbjct: 875  PQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCV 934

Query: 914  WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ 973
            W+ DGW  Q  + LQ P G  T A S+T +QFH+DQ  FL+VHET LAIYE  +L C+KQ
Sbjct: 935  WNTDGWEKQKSKVLQIPQGRSTSALSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQ 994

Query: 974  WFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1031
            W P+  SS PI+ ATFSCD ++++TSF+D T+ +  ++NL ++CR+  +AYL  + S  +
Sbjct: 995  W-PVRESSAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSN 1053

Query: 1032 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1075
            V+P  IAAHP +   FAVGL++G V++ EP E    W V PP E
Sbjct: 1054 VHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata]

 Score = 1189 bits (3077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1131 (55%), Positives = 784/1131 (69%), Gaps = 87/1131 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W+DVE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD AKA+ IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP++K        N SL
Sbjct: 121  LENFRENEQLSKY-GDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK--------NSSL 171

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   ++   PP       
Sbjct: 172  NWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPF 231

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKVAV-----------TMDRPE- 267
            Q T +P     + W  +   +T  AVS  A+ L  P+   A            ++D P  
Sbjct: 232  QPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 291

Query: 268  DSDILSEKS-PVRILNEQASTVTYPGVSLKNIP-DYSPKSSLKKEMFQSFGETSFSDFPK 325
            DSD LS+++ P+ I +E             N+P +  P S       Q+F  ++  D PK
Sbjct: 292  DSDHLSKRTRPIGISDE------------INLPVNVLPVSFTGHSHSQAF--SAPEDLPK 337

Query: 326  TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS 385
            TV +TL +GSS PMSMDFHPVQ TLLLVGTNVGD GLW+V S ++L +RNFKVWD+GACS
Sbjct: 338  TVTRTLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 396

Query: 386  MLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNV 445
            M  + ALV+DPGVSVNRV+WSPDGSL GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG V
Sbjct: 397  MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 456

Query: 446  NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFS 505
            ND+AFS P KQ+ VITCGDDKTIKVWDA  G++ Y FEGH APVYS+CPH KENI FIFS
Sbjct: 457  NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFS 516

Query: 506  ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 565
             ++DGKIKAWLYD+LG+RVDY+APG  CT MAYSA+G RLFSCGTSK+GESF+VEWNESE
Sbjct: 517  TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESE 576

Query: 566  GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 625
            GA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ VQLLT+IDA GGLP 
Sbjct: 577  GAVKRTYQGFRKR--SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA 634

Query: 626  NPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPIS 677
            +PRI FNK+G LLAV  N+N IKIL T +         N    A   S+N  K +++PIS
Sbjct: 635  SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPIS 693

Query: 678  -----TVTGAGIANGSVSVNEDPK--------EDVKPEISVEAENKSEVEK-PLFARPSE 723
                   T AG+A+ + S+   P          DVKP I+ E+ +KS+V K    + P++
Sbjct: 694  AAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 753

Query: 724  CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 783
            C+SL LP  ++A KISRL + N G AI ALASN +HL+W+W R +   S +AT  V P+L
Sbjct: 754  CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 813

Query: 784  YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 843
            +QP  G   M ND TDSN +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP
Sbjct: 814  WQPPSG-IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP 872

Query: 844  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 903
             P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GHSKR+TGL FS ALN+LV
Sbjct: 873  PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 932

Query: 904  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 963
            SSG D+Q+ VW  DGW  Q  R LQ P G    A S+T +QFH+DQ  FL+VHET LAI+
Sbjct: 933  SSGADSQLCVWGSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 992

Query: 964  EAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1022
            E  +L C+KQW P  SS PI+ ATFSCD ++V+  F+D T+ +  A+NL+++CRI  +AY
Sbjct: 993  ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1052

Query: 1023 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1073
            L P     +V+P  IAAHP +P +FA+GL++G V+V EP E    W V PP
Sbjct: 1053 L-PAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1102

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1093
TAIR|locus:2198888	1120	TPR1 "TOPLESS-related 1" [Arab	0.766	0.748	0.540	9.49999999793e-315
TAIR|locus:2036204	1131	TPL "TOPLESS" [Arabidopsis tha	0.789	0.763	0.539	5.20000000001e-314
TAIR|locus:2086770	1131	TPR2 "TOPLESS-related 2" [Arab	0.647	0.625	0.493	4.3e-270
TAIR|locus:2040100	740	AT2G25420 "AT2G25420" [Arabido	0.321	0.474	0.361	8.2e-86
ASPGD|ASPL0000032162	1364	AN8468 [Emericella nidulans (t	0.556	0.445	0.239	4.8e-17
MGI|MGI:1918511	476	Poc1b "POC1 centriolar protein	0.229	0.527	0.242	3.5e-14
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.187	0.665	0.243	8.4e-14
TAIR|locus:2172432	523	AT5G43920 "AT5G43920" [Arabido	0.168	0.351	0.264	9.9e-14
FB|FBgn0040066	361	wds "will die slowly" [Drosoph	0.187	0.567	0.247	1.1e-13
UNIPROTKB|Q5M786	334	wdr5 "WD repeat-containing pro	0.187	0.613	0.243	1.2e-13

TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2338 (828.1 bits), Expect = 9.5e-315, Sum P(2) = 9.5e-315
 Identities = 473/875 (54%), Positives = 606/875 (69%)

Query:   223 PPQTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKVAV----------TMDRPE 267
             P Q T SP     + W  S S +   AVS   ++L  P+ + A+           +D P 
Sbjct:   238 PFQPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYPS 297

Query:   268 -DSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKT 326
              DSD +S+++    ++++ S     GV++  +P   P  +      Q+F      D PKT
Sbjct:   298 GDSDHVSKRTRPMGISDEVSL----GVNM--LPMTFPGQAHGHN--QTFKAPD--DLPKT 347

Query:   327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSM 386
             VA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  + FKVWD+  CSM
Sbjct:   348 VARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSM 406

Query:   387 LFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN 446
               + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VN
Sbjct:   407 PLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVN 466

Query:   447 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 506
             D+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI FIFS 
Sbjct:   467 DIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFST 526

Query:   507 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 566
             ++DGKIKAWLYD++G+RVDY+APG  CT MAYSA+G RLFSCGTSK+GESF+VEWNESEG
Sbjct:   527 ALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEG 586

Query:   567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 626
             A+KRTYQG   +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLLT IDA GGL  +
Sbjct:   587 AVKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQAS 644

Query:   627 PRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIA 685
             PRI FNK G+LLAV AN+N IK++   +    +     LS    K ++N I  V      
Sbjct:   645 PRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPASV 704

Query:   686 NGSVSVNEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLPSKVKANKISRLT 742
                  +N D +   DVKP I+ E+ +KS+V K      PS+C+SL LP  ++  KISRL 
Sbjct:   705 VSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKISRLI 764

Query:   743 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 802
             + N G AI ALASN +HL+W+W RND   + +AT  +PP+ +QP  G   M ND  ++N 
Sbjct:   765 FTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGI-LMTNDVAETNP 823

Query:   803 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 862
             +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+IAI
Sbjct:   824 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI 883

Query:   863 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 922
             GMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DGW  Q
Sbjct:   884 GMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQ 943

Query:   923 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI--SSV 980
               + LQ P G  T + S+T +QFH+DQ  FL+VHET LAIYE  +L C+KQW P+  S+ 
Sbjct:   944 KSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQW-PVRESAA 1002

Query:   981 PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1040
             PI+ ATFSCD ++++TSF+D T+ +  ++NL ++CR+  +AYL  + S  +V+P  IAAH
Sbjct:  1003 PITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAH 1062

Query:  1041 PLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1075
             P +   FAVGL++G V++ EP E    W V PP E
Sbjct:  1063 PQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)]

 Score = 2338 (828.1 bits), Expect = 5.2e-314, Sum P(2) = 5.2e-314
 Identities = 484/897 (53%), Positives = 612/897 (68%)

Query:   223 PPQTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKVAVTMDR-PEDSDILSEKS 276
             P Q T SP     + W  S S +   AVS  A++L  P+   A+   R P  +  L   S
Sbjct:   238 PFQPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYPS 297

Query:   277 PVRILNEQASTVTYP-GVSLK-NIP-DYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIE 333
                  +E  S  T P G+S + N+  +  P S   +    S    +  D PKTVA+TL +
Sbjct:   298 AD---SEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQ 354

Query:   334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 393
             GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  + FKVWD+  CSM  + ALV
Sbjct:   355 GSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALV 413

Query:   394 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 453
             ++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND++FS P
Sbjct:   414 KEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTP 473

Query:   454 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK 513
              KQ+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS ++DGKIK
Sbjct:   474 NKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIK 533

Query:   514 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 573
             AWLYD++G+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA+KRTYQ
Sbjct:   534 AWLYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQ 593

Query:   574 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 633
             G   +  S+ VV FDT K++ LAAGDD  IK WDM+ VQLLT ID  GGL  +PRI FNK
Sbjct:   594 GFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNK 651

Query:   634 NGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTV-----TGAGIANG 687
              G+LLAV  NEN IKI+   +    +     +S    K ++N I+       T AG A+ 
Sbjct:   652 EGSLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATSAGHADR 711

Query:   688 SVSV------NEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLPSKVKANKI 738
             S +V      N D +   DVKP I+ E+ +KS++ K    + PS+C+SL LP  ++  KI
Sbjct:   712 SANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKI 771

Query:   739 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 798
             SRL + N G AI ALASN +HL+W+W RN+   + +AT  +PP+ +QP  G   M ND  
Sbjct:   772 SRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI-LMTNDVA 830

Query:   799 DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 858
             ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN
Sbjct:   831 ETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 890

Query:   859 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 918
             +IAIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DG
Sbjct:   891 IIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDG 950

Query:   919 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS 978
             W  Q  + L  P G    APS+T +QFH+DQ  FL+VHET LAIYE  +L C+KQW    
Sbjct:   951 WEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRE 1010

Query:   979 SV-PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAI 1037
             S+ PI+ ATFSCD ++V+ SF+D T+ +  ++NL ++CR+  +AYL  + S  +V+P  I
Sbjct:  1011 SLAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVI 1070

Query:  1038 AAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE--IVGDQPTSTSEGDRAMD 1092
             AAHP +P  FAVGL++G V++ EP E    W V PP E       PT+ S G  A D
Sbjct:  1071 AAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASD 1127

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010072 "primary shoot apical meristem specification" evidence=IGI;IMP

GO:0009733 "response to auxin stimulus" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IGI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1733 (615.1 bits), Expect = 4.3e-270, Sum P(2) = 4.3e-270
 Identities = 364/738 (49%), Positives = 487/738 (65%)

Query:     1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
             MS L+++LVFLILQFL+EE F ES H LE+ES F+F++K+FE+  L G+W++VE+YLS F
Sbjct:     1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60

Query:    61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
             TKVDDNRYS KI+FEIRKQ + EALD +D AKA+ IL KDLK FA  NEEL+KE+ QLLT
Sbjct:    61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120

Query:   121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
             L++ R++E LSKY GD  SAR  M  ELK++IEANP+ + KL FPS K  RLR LINQSL
Sbjct:   121 LENFRENEQLSKY-GDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSL 179

Query:   181 NWQHVHCANPQPNPDINTLFVDHVCQ-------LQETDF--SGQSSESNALPPQTTQSPS 231
             NWQH  C NP+PNPDI TLF+DH C        L   +   +  +  SN +P      P 
Sbjct:   180 NWQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPF 239

Query:   232 SWNFSSSMLTDSAVSFVAL---SLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTV 288
               N + +   ++   ++A    S S P+  VA +    + S +   K P R  +     +
Sbjct:   240 QSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHP-RAPSNSLGLM 298

Query:   289 TYPGVSLKNIPDYSPKSSLKKEMF---QSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHP 345
              Y     + +      +    E+     S    S  D P+ V  T+ +GS   +SMDFHP
Sbjct:   299 DYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVV-ISMDFHP 357

Query:   346 VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 405
               HTLL VG + G+  LW+V S +K+    FK+W++ ACS++F+ ++V++P +SV RV W
Sbjct:   358 SHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAW 417

Query:   406 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD 465
             SPDG+LLGV+++KH++ +YAY G SD RQ LEIDAHVG VNDLAF+ P KQ+ V+TCGDD
Sbjct:   418 SPDGNLLGVSFTKHLIHVYAYQG-SDLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDD 476

Query:   466 KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD 525
             K IKVWD ++G + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD++G+RVD
Sbjct:   477 KLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVD 535

Query:   526 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV 585
             YDAPG  CT M YSA+G RLFSCGTSKEG+SFLVEWNESEGA+KRTY G + +  S  VV
Sbjct:   536 YDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKK--SAGVV 593

Query:   586 HFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 645
              FDT +++ LA G+D+ IK W+M+   LLT ++A GGLP  PR+ FNK+G LLAV   +N
Sbjct:   594 QFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADN 653

Query:   646 RIKILETPES-NSVDAAGVLSDNLRKLSVN-PISTVTGAGIANGSVSVNE--DPKEDVKP 701
               KIL   +   ++ A    S    K S++  +ST   A   + ++   E  D     +P
Sbjct:   654 GFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARP 713

Query:   702 EI---SVEAENKSEVEKP 716
                   +EA +++ +EKP
Sbjct:   714 TPIPNGIEAMSRT-MEKP 730

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 8.2e-86, Sum P(2) = 8.2e-86
 Identities = 132/365 (36%), Positives = 198/365 (54%)

Query:   721 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 780
             PS+C +L+LP      KI+RLTY+  G  I ALA +  H +W W  +      E      
Sbjct:   375 PSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQNEFCKE-NVYPK 433

Query:   781 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 840
             PRL+QP+ G + M N+   S  Q++  CFA+    +YLFS SGG I+++ +  F+ + + 
Sbjct:   434 PRLHQPQSG-KTMENEMATS-VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNFEKVASF 489

Query:   841 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 900
               P+P AT   F P D  ++A+G+DD +I I+   S +V  KLEGH +++T L FS   N
Sbjct:   490 GSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFSRCFN 547

Query:   901 ILVSSGGDAQIFVWDVDGWGIQTCR-SLQTPDGVMTLAPSE--THIQFHKDQTRFLLVHE 957
             +LVSS  D ++ +W    W   T + S +       L  +   THIQF   Q   L+VH+
Sbjct:   548 VLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELLVVHD 607

Query:   958 THLAIYEAEELTCLKQWFPISSVP-ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1016
               + +YE   L C  QW P +S P I+ AT+S D  +++  F  G++ I ++      C+
Sbjct:   608 GWIGLYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKTFMTLCQ 667

Query:  1017 ILSTAYLRPTTS--CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1074
             I  T++ + +TS   L VYP  +AAHP  P Q + GL+NG+V V++P   G  W    P 
Sbjct:   668 INLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGG-WGEAAPL 726

Query:  1075 EIVGD 1079
             E  GD
Sbjct:   727 EDNGD 731

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)]

 Score = 264 (98.0 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
 Identities = 168/701 (23%), Positives = 298/701 (42%)

Query:   301 YSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFH--PVQHTLLLVGTNVG 358
             +SP+ S+ + +F ++  + +S  PK V QT    S+   +++ H  PV+  +        
Sbjct:   711 FSPEGSITRRIF-NYNLSGWSQLPK-VEQTW---SAEQQTLENHLGPVESVVFSPDGKQL 765

Query:   359 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 418
              +G +D            K+WD  A   L +T L    G +V  + +SPDG LL      
Sbjct:   766 VSGSYD---------DTVKIWD-PATGELLQT-LDGHSG-TVESLAFSPDGKLLASGSYD 813

Query:   419 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 478
             + + L+    G +  Q  E   H  ++  +AF+   K+++  +  DD TIK+WD  TG  
Sbjct:   814 NTIDLWDSATG-ELLQTFE--GHPHSIWSVAFAPDGKELA--SASDDSTIKIWDLATGEL 868

Query:   479 TYSFEGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTR 535
               + + H   V S+   P  K     + S S+D  IK W  +     +     G  G  +
Sbjct:   869 QQTLDSHSQSVRSVAFSPDGK----LLASSSLDSTIKVW--NPATGELQQSLEGRSGWVK 922

Query:   536 -MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI 594
              +A+S +G++L S G+ K        WN + G + +T +G      SV  V F     Q+
Sbjct:   923 SVAFSPDGKKLAS-GSEKNTVKL---WNPATGELLQTLEG---HSQSVRSVAFSPDGKQL 975

Query:   595 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI--LET 652
              ++  D  IK+W+    +L  T   G  L     + F+ +G  L   +++N IK+  L T
Sbjct:   976 ASSSSDTTIKLWNSTTGELQQTFK-GHDLWIRA-VAFSPDGKHLVSGSDDNTIKLWDLAT 1033

Query:   653 PE--------SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN-EDPKEDVK--- 700
              E        S SV A     D+ +  S +  ST+     A G +    E   + V+   
Sbjct:  1034 SELQQSLEDHSRSVHAVAFSPDDKQLASSSLDSTIKLWDSATGELQRTLEGHSQGVRSVT 1093

Query:   701 --PEISVEAENKSEVEKPLFARP--SECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 756
               P+  + A N  +    L+  P   E Q  L     +++ +  + ++  G+ + +   +
Sbjct:  1094 FSPDGKLLASNSYDGTIKLW-NPLTGELQQTLTG---RSDWVDSVAFSPDGKQLASGYYD 1149

Query:   757 GVHLMWRWPRNDLTLSTEA-TTKVPPRLYQP-----RHGPQFMVNDTTDSNSQEAVPCF- 809
                 +W     +L  + E  + ++   ++ P       G         D  + E +  F 
Sbjct:  1150 STIKLWDSATGELLQTLEGHSDRIQSVVFSPDGKLLASGSYDQTAKLWDPATGELLQIFE 1209

Query:   810 ---------ALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 859
                      A S +   L S+S G  I L+  +T + + T+  P  +A S+AF+P  N +
Sbjct:  1210 GHSKWVESVAFSPDGKLLASSSYGETIKLWDPVTGELLQTLNDPDESAGSVAFSPDGNRL 1269

Query:   860 IAIGMDDSTILIYNARSSEVISKLEGHSKRV---TGLVFSDALNILVSSGGDAQIFVWDV 916
              ++ + D+ I  ++  + E++  L+GHSK V   TG   S  L+  +    + +I +W  
Sbjct:  1270 ASVDIFDTKI--WDPATGELLQALKGHSKWVWSRTGAGISIFLDQWLCLQ-EKRI-LWLP 1325

Query:   917 DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 957
               +    C S+   DGV+ L  S   + F +   RFL+  E
Sbjct:  1326 QSYQ-PFCISVN--DGVLVLGHSSGRVSFIQGP-RFLIESE 1362

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1918511 Poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Mus musculus (taxid:10090)]

 Score = 173 (66.0 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
 Identities = 64/264 (24%), Positives = 108/264 (40%)

Query:   428 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 487
             G  D   +     H   +    FS  CKQI+  T   D  + +W     +R Y + GH  
Sbjct:     4 GLEDPILERSFKGHKAAITSADFSPNCKQIA--TASWDTFLMLWSLKPHARAYRYVGHKD 61

Query:   488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 547
              V SL    + N+  + S S D  ++ W+ D  G   ++ A       + +SA+G+ L  
Sbjct:    62 VVTSLQFSPQGNL--LASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLV- 118

Query:   548 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 607
               T+ E +S  V W+      +R    L    + V    F      I++  +D  IKIWD
Sbjct:   119 --TASEDKSIKV-WSMFR---QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD 172

Query:   608 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN 667
                 Q +       G      + FN NGT +A   +++ +KI +   +  +    V S  
Sbjct:   173 TTNKQCVNNFSDSVGFANF--VDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCG 230

Query:   668 LRKLSVNPISTVTGAGIANGSVSV 691
             +  LS +P+        ++G+V +
Sbjct:   231 VNCLSFHPLGNSLVTASSDGTVKM 254

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005814 "centriole" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005932 "microtubule basal body" evidence=ISO

GO:0030030 "cell projection organization" evidence=IEA

GO:0042384 "cilium assembly" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
 Identities = 53/218 (24%), Positives = 103/218 (47%)

Query:   399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
             +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct:    21 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76

Query:   459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
              ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct:    77 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 133

Query:   519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
             +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct:   134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 187

Query:   579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
             +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct:   188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

TAIR|locus:2172432 AT5G43920 "AT5G43920" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 9.9e-14, Sum P(3) = 9.9e-14
 Identities = 54/204 (26%), Positives = 96/204 (47%)

Query:     7 DLVFLILQFLNEEGFTESAHMLERESRFYF---DMKFFEDMILDGKWEDVEQYLSSF--T 61
             + + +++Q L   GF  SA  LE ES+  +   D +F E  +L G W+   Q L      
Sbjct:    19 EFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLSGNWDSCVQVLDRIFDN 78

Query:    62 KVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL 121
              +DD R +T +Y  + KQ   E L   D++ ALN+L+K       G E++ +    ++  
Sbjct:    79 SMDDTR-NTALYL-VFKQCLLEYLKRGDVSLALNVLRKQAPLLRMGKEKIHRLACDIVYS 136

Query:   122 DDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLN 181
              ++   E+ +      L  R+ +++EL+++I   PI+        I  +RL  L+  ++ 
Sbjct:   137 KEMESGEVDNCL---VLDLRRKLLVELEKLIPL-PIV--------IPERRLEHLVETAVM 184

Query:   182 WQHVHCANPQPNPDINTLFVDHVC 205
              Q   C     + D  +L+ DH C
Sbjct:   185 DQIDTCMYHN-SCDAVSLYKDHCC 207

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)]

 Score = 170 (64.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
 Identities = 54/218 (24%), Positives = 104/218 (47%)

Query:   399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
             +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+  + + 
Sbjct:    74 AVSAVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSRLL- 129

Query:   459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
              ++  DDKT+KVW+  TG    + +GH    Y  C +     + I S S D  ++ W   
Sbjct:   130 -VSGSDDKTLKVWELSTGKSLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVR 186

Query:   519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
             +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct:   187 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 240

Query:   579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
             +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct:   241 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 278

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IPI

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0044665 "MLL1/2 complex" evidence=ISS

GO:0044666 "MLL3/4 complex" evidence=IDA

UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 170 (64.9 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 53/218 (24%), Positives = 103/218 (47%)

Query:   399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
             +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct:    47 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102

Query:   459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
              ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct:   103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159

Query:   519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
             +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct:   160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213

Query:   579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
             +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct:   214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WV90	TPR1_ARATH	No assigned EC number	0.5442	0.9634	0.9401	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1093
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-14
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	1e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-06
smart00320	40	smart00320, WD40, WD40 repeats	8e-06
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  112 bits (282), Expect = 3e-27
 Identities = 81/324 (25%), Positives = 126/324 (38%), Gaps = 47/324 (14%)

Query: 332 IEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT 390
           ++G +     + F P    L         TG  D            KVWD+   +     
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLA--------TGSGD---------GTIKVWDL--ETGELLR 45

Query: 391 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 450
            L       V  V  S DG+ L    S   ++L+    G   R    +  H   V+ +AF
Sbjct: 46  TLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAF 101

Query: 451 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG 510
           S P  +I + +   DKTIKVWD  TG    +  GH   V S+      +  F+ S S DG
Sbjct: 102 S-PDGRI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS--PDGTFVASSSQDG 157

Query: 511 KIKAWLYDSLGARVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 568
            IK W  D    +      G       +A+S +G +L S  +   G   L  W+ S G  
Sbjct: 158 TIKLW--DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD--GTIKL--WDLSTGKC 211

Query: 569 KRTYQGLQLQH-NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 627
             T +G    H N V+ V F      + +  +D  I++WD+   + + T+        N 
Sbjct: 212 LGTLRG----HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG----HTNS 263

Query: 628 --RICFNKNGTLLAVIANENRIKI 649
              + ++ +G  LA  + +  I+I
Sbjct: 264 VTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 89.4 bits (220), Expect = 2e-18
 Identities = 89/415 (21%), Positives = 162/415 (39%), Gaps = 29/415 (6%)

Query: 292 GVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLL 351
           G SL ++   S  SS    +  +    S    P   +  L     S  S+ F P    LL
Sbjct: 22  GPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGE-LL 80

Query: 352 LVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 410
           L G++ G   LWD+++G+KL                   +L      SV+++   SPDG+
Sbjct: 81  LSGSSDGTIKLWDLDNGEKLIK-----------------SLEGLHDSSVSKLALSSPDGN 123

Query: 411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 470
            + +A S     +  +   +  +    ++ H  +V  LAFS P  ++       D TIK+
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKL 182

Query: 471 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 530
           WD  TG    +  GH  PV SL       +    S S DG I+ W   +        +  
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA-SGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 531 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 590
                 ++S +G  L S  +      + +  + S          L    +SV  V F   
Sbjct: 242 SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT------LSGHSSSVLSVAFSPD 295

Query: 591 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKI 649
              + +   D  +++WD+   +LL+++   G       + F+ +G+LL    +++  I++
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355

Query: 650 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 704
            +      +      S N+  +S +P   V  +G  +G+V + +     +   + 
Sbjct: 356 WDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 26/213 (12%)

Query: 806  VPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 864
            V C A S +   L + SG G I ++ + T + + T+   +     +A +  D   +A G 
Sbjct: 12   VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70

Query: 865  DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 924
             D TI +++  + E +  L GH+  V+ + FS    IL SS  D  I VWDV+     T 
Sbjct: 71   SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TG 125

Query: 925  RSLQT----PDGVMTLAPSETHIQF----HKDQTRFLLVHETHLAIYEAEELTCLKQWFP 976
            + L T     D V ++A S     F     +D T    +      +++     C+     
Sbjct: 126  KCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGT----IK-----LWDLRTGKCVAT-LT 174

Query: 977  ISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009
              +  ++   FS D   + +S  DGT+ + + S
Sbjct: 175  GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 18/208 (8%)

Query: 803  QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 861
               V   A S +   L S+S    I ++ V T K + T+   +    S+AF+P D   +A
Sbjct: 93   TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151

Query: 862  IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWG 920
                D TI +++ R+ + ++ L GH+  V  + FS     L+SS  D  I +WD+  G  
Sbjct: 152  SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211

Query: 921  IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFPI 977
            + T R     +GV ++A S            +LL     +  + +++     C++     
Sbjct: 212  LGTLRG--HENGVNSVAFS---------PDGYLLASGSEDGTIRVWDLRTGECVQT-LSG 259

Query: 978  SSVPISQATFSCDCRMVFTSFVDGTLSI 1005
             +  ++   +S D + + +   DGT+ I
Sbjct: 260  HTNSVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 34 FYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAK 92
           + + K   ++IL G W++  ++LSS       R S K+ FE+RKQ F E +    + +
Sbjct: 1  EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 803 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 861
              V   A S +   L S+S  G I L+ + T K + T+        S+AF+P    + +
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236

Query: 862 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 915
            G +D TI +++ R+ E +  L GH+  VT L +S     L S   D  I +WD
Sbjct: 237 -GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 81/459 (17%), Positives = 174/459 (37%), Gaps = 72/459 (15%)

Query: 433 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAPVY 490
              L +  H  ++  +AFS P  ++ +++   D TIK+WD   G +        H + V 
Sbjct: 56  LSSLLLRGHEDSITSIAFS-PDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVS 113

Query: 491 SLCPHAKENIHFIFSIS-VDGKIKAW-LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 548
            L   + +    + + S +DG +K W L          +      T +A+S +G+ L S 
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173

Query: 549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWD 607
            +       +  W+   G    T  G     + VS + F       I +   D  I++WD
Sbjct: 174 SSLD---GTIKLWDLRTGKPLSTLAG---HTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 608 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SD 666
           ++  +LL +  +G    ++    F+ +G+LLA  +++  I++ +   S+S+       S 
Sbjct: 228 LSTGKLLRSTLSG--HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285

Query: 667 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 726
           ++  ++ +P   +  +G ++G+V + +     +   ++++                    
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE----------------- 328

Query: 727 LLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 785
                      +S L+++ +G   +   + +G   +W         + E           
Sbjct: 329 ---------GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE----------- 368

Query: 786 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPS 844
                               V   + S +   + S S  G + L+ + T   +  +   +
Sbjct: 369 ----------------GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412

Query: 845 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 883
              TSL F+P D   +A G  D+TI +++ ++S      
Sbjct: 413 SRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.0 bits (154), Expect = 2e-10
 Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 13/222 (5%)

Query: 812  SKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 870
              +     S+  G + L+ + T  K I T+   S + TSLAF+P    + +    D TI 
Sbjct: 122  GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181

Query: 871  IYNARSSEVISKLEGHSKRVTGLVFS-DALNILVSSGGDAQIFVWDVDGWG-IQTCRSLQ 928
            +++ R+ + +S L GH+  V+ L FS D   ++ S   D  I +WD+     +++  S  
Sbjct: 182  LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 929  TPDGVMTLAPSETHIQFHKDQTRFLLVHETH-LAIYEAEELTCLKQWFPISSVPISQATF 987
            +   V +         F  D +          + +++    + L +     S  +    F
Sbjct: 242  SDSVVSS---------FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292

Query: 988  SCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1029
            S D +++ +   DGT+ + +    ++   +    +  P +S 
Sbjct: 293  SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 10/218 (4%)

Query: 806  VPCFALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 863
            V   A S +   L ++    G I L+ + T K + + +     +   +F+P D +++A G
Sbjct: 201  VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP-DGSLLASG 259

Query: 864  MDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 922
              D TI +++ RS S ++  L GHS  V  + FS    +L S   D  + +WD++   + 
Sbjct: 260  SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319

Query: 923  TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPI 982
            +  +L+  +G        + + F  D +  +        I   +  T            +
Sbjct: 320  SSLTLKGHEG------PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV 373

Query: 983  SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1020
               +FS D R+V +   DGT+ + + S   +   +   
Sbjct: 374  LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 83/472 (17%), Positives = 173/472 (36%), Gaps = 76/472 (16%)

Query: 457 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 516
           I ++    D  + + D      +    GH   + S+      +   + S S DG IK W 
Sbjct: 40  ILLLALLSDSLVSLPD----LSSLLLRGHEDSITSIAFS--PDGELLLSGSSDGTIKLWD 93

Query: 517 YDSLGARVD--YDAPGLGCTRMAY-SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 573
            D+    +           +++A  S +G  +    +S +G   +  W+ S         
Sbjct: 94  LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG--TVKLWDLSTPGKLIRT- 150

Query: 574 GLQLQHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 632
            L+    SV+ + F      + +    D  IK+WD+   + L+T+        +  + F+
Sbjct: 151 -LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS--LAFS 207

Query: 633 KNGTLLAVIANENR-IKI--LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 689
            +G LL    + +  I++  L T +      +G     +   S +     +G+  ++G++
Sbjct: 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS--SDGTI 265

Query: 690 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 749
            +                                         ++++     T +    +
Sbjct: 266 RL---------------------------------------WDLRSSSSLLRTLSGHSSS 286

Query: 750 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 809
           + ++A +    +        + S++ T ++    +    G        T    +  V   
Sbjct: 287 VLSVAFSPDGKLL------ASGSSDGTVRL----WDLETGKLLSS--LTLKGHEGPVSSL 334

Query: 810 ALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 867
           + S + + L S     G I L+ + T K + T+   S    S++F+P D  V++ G  D 
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDG 392

Query: 868 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 919
           T+ +++  +  ++  L+GH+ RVT L FS     L S   D  I +WD+   
Sbjct: 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 27/203 (13%)

Query: 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 388
           +TL   SSS +S+ F P    LL  G++ G   LWD+ +G+ L     K           
Sbjct: 278 RTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLK----------- 325

Query: 389 KTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVND 447
                      V+ + +SPDGSLL    S    ++L+         + L+      NV  
Sbjct: 326 ------GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL----RTGKPLKTLEGHSNVLS 375

Query: 448 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 507
           ++FS   + +S  +   D T+++WD  TGS   + +GH + V SL          + S S
Sbjct: 376 VSFSPDGRVVS--SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS--LASGS 431

Query: 508 VDGKIKAWLYDSLGARVDYDAPG 530
            D  I+ W   +    V +   G
Sbjct: 432 SDNTIRLWDLKTSLKSVSFSPDG 454

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.3 bits (126), Expect = 5e-07
 Identities = 28/161 (17%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 532 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 591
           G T +A+S +G+ L +          +  W+   G + RT +G       V  V      
Sbjct: 11  GVTCVAFSPDGKLLATGSGDGT----IKVWDLETGELLRTLKGHTG---PVRDVAASADG 63

Query: 592 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKIL 650
             + +   D  I++WD+   + + T+    G       + F+ +G +L+  + +  IK+ 
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 651 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 691
           +      +      +D +  ++ +P  T   +   +G++ +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.0 bits (125), Expect = 8e-07
 Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 18/130 (13%)

Query: 883  LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 942
            L+GH+  VT + FS    +L +  GD  I VWD++   +       T   V         
Sbjct: 5    LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPV-------RD 56

Query: 943  IQFHKDQTRFLLVHETHLA-IYEAEELTCLKQWF----PISSVPISQATFSCDCRMVFTS 997
            +    D T            +++ E   C++        +SSV      FS D R++ +S
Sbjct: 57   VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV-----AFSPDGRILSSS 111

Query: 998  FVDGTLSIHE 1007
              D T+ + +
Sbjct: 112  SRDKTIKVWD 121

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 40/180 (22%)

Query: 322 DFPKTVAQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF---- 376
           D       T + G +    S+ F P   T +   +  G   LWD+ +G+   +       
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGK--CVATLTGHT 177

Query: 377 ------------------------KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 412
                                   K+WD+   S       +R     VN V +SPDG LL
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLL 234

Query: 413 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472
                   ++++    G        +  H  +V  LA+S   K+  + +   D TI++WD
Sbjct: 235 ASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKR--LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 876 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 915
           S E++  L+GH+  VT + FS     L S   D  I +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 4  LNKDLVFLILQFLNEEGFTESAHMLERESRF 34
             +L  LIL++L   G+ E+A  L++ES  
Sbjct: 2  SRSELNRLILEYLLRNGYEETAETLQKESGL 32

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 878 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 915
           +++  L+GH+  VT + FS   N+L S   D  + VWD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 433 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472
           +    +  H G V  +AFS     +   +  DD T++VWD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 437 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472
            +  H G V  +AFS   K +   +  DD TIK+WD
Sbjct: 7   TLKGHTGPVTSVAFSPDGKYL--ASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 850 LAFNPHDNNVIAIGMDDSTILIYN-------ARSSEVISKLEGHSKRVTGLVF-SDALNI 901
           +AFNP D   +    +D TI+ +           S+ I  L+GH+K+V  + F   A+N+
Sbjct: 81  VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140

Query: 902 LVSSGGDAQIFVWDVD 917
           L S+G D  + VWDV+
Sbjct: 141 LASAGADMVVNVWDVE 156

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1093
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	99.98
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.98
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG1963	792	consensus WD40 repeat protein [General function pr	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG1963	792	consensus WD40 repeat protein [General function pr	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.87
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.81
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.81
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.81
KOG4328	498	consensus WD40 protein [Function unknown]	99.81
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.8
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.8
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.79
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.78
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.78
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.78
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.76
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.76
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
KOG1334	559	consensus WD40 repeat protein [General function pr	99.76
KOG1310	758	consensus WD40 repeat protein [General function pr	99.74
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.74
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.74
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.73
KOG4227	609	consensus WD40 repeat protein [General function pr	99.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.73
KOG1188	376	consensus WD40 repeat protein [General function pr	99.72
KOG0649	325	consensus WD40 repeat protein [General function pr	99.72
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.72
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.72
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.72
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.72
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.71
KOG1188	376	consensus WD40 repeat protein [General function pr	99.71
PRK11028	330	6-phosphogluconolactonase; Provisional	99.71
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.69
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.67
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.66
PRK01742	429	tolB translocation protein TolB; Provisional	99.66
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.65
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.65
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.64
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.64
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.64
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.64
COG4946	668	Uncharacterized protein related to the periplasmic	99.63
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.62
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.62
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.62
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.61
KOG1334	559	consensus WD40 repeat protein [General function pr	99.61
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.61
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.6
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.6
PRK01742	429	tolB translocation protein TolB; Provisional	99.59
KOG2139	445	consensus WD40 repeat protein [General function pr	99.59
KOG2321	703	consensus WD40 repeat protein [General function pr	99.59
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.59
KOG1310	758	consensus WD40 repeat protein [General function pr	99.58
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.58
KOG2139	445	consensus WD40 repeat protein [General function pr	99.58
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.57
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.57
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.56
PRK03629	429	tolB translocation protein TolB; Provisional	99.56
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.56
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.56
PRK05137	435	tolB translocation protein TolB; Provisional	99.55
PRK04922	433	tolB translocation protein TolB; Provisional	99.51
COG4946	668	Uncharacterized protein related to the periplasmic	99.51
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.5
PRK03629	429	tolB translocation protein TolB; Provisional	99.5
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.5
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.49
PRK04922	433	tolB translocation protein TolB; Provisional	99.48
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.48
PRK02889	427	tolB translocation protein TolB; Provisional	99.48
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.47
KOG2315	566	consensus Predicted translation initiation factor	99.47
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.47
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.47
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.46
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.45
KOG2314	698	consensus Translation initiation factor 3, subunit	99.45
KOG2315	566	consensus Predicted translation initiation factor	99.45
KOG2314	698	consensus Translation initiation factor 3, subunit	99.45
PRK05137	435	tolB translocation protein TolB; Provisional	99.43
KOG2321	703	consensus WD40 repeat protein [General function pr	99.41
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.4
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.4
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.39
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.38
PRK01029	428	tolB translocation protein TolB; Provisional	99.35
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.35
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.34
PRK01029	428	tolB translocation protein TolB; Provisional	99.34
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.33
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	99.33
PRK00178	430	tolB translocation protein TolB; Provisional	99.32
PRK04792	448	tolB translocation protein TolB; Provisional	99.32
PRK00178	430	tolB translocation protein TolB; Provisional	99.32
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.31
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.3
PRK04792	448	tolB translocation protein TolB; Provisional	99.3
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.28
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.28
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.27
KOG4547	541	consensus WD40 repeat-containing protein [General	99.24
KOG4547	541	consensus WD40 repeat-containing protein [General	99.24
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.15
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.07
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	99.07
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.04
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.0
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.0
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.0
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.99
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.98
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.98
PRK04043	419	tolB translocation protein TolB; Provisional	98.97
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.96
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.9
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.87
PRK04043	419	tolB translocation protein TolB; Provisional	98.86
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.84
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.81
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.81
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.8
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.79
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.79
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.79
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.77
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.76
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.71
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.71
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.7
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.7
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.69
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.69
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.67
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.65
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.64
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.61
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.6
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.6
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.59
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.58
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.57
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.56
PRK02888	635	nitrous-oxide reductase; Validated	98.55
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.55
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.54
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.52
KOG2695	425	consensus WD40 repeat protein [General function pr	98.52
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.51
KOG0396	389	consensus Uncharacterized conserved protein [Funct	98.48
PRK02888	635	nitrous-oxide reductase; Validated	98.47
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.46
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.45
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.44
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.43
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.43
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.4
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	98.39
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.32
KOG3621	726	consensus WD40 repeat-containing protein [General	98.28
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.23
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.18
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.18
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.18
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.17
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.16
KOG2695	425	consensus WD40 repeat protein [General function pr	98.15
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.14
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.09
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.08
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	98.03
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.01
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.97
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.96
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	97.94
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.93
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.9
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.87
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.86
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.86
PRK13616	591	lipoprotein LpqB; Provisional	97.86
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.84
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.79
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.75
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.74
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.74
COG3391	381	Uncharacterized conserved protein [Function unknow	97.73
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.72
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.71
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.71
PRK13616	591	lipoprotein LpqB; Provisional	97.68
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.68
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.65
COG3391	381	Uncharacterized conserved protein [Function unknow	97.64
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.6
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.53
KOG3621	726	consensus WD40 repeat-containing protein [General	97.49
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.47
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.46
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.43
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.37
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.33
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.31
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	97.24
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.23
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.23
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.2
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.19
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.18
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.14
PRK10115	686	protease 2; Provisional	97.0
PRK10115	686	protease 2; Provisional	97.0
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.99
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.91
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.87
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.83
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.72
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.66
KOG2395	644	consensus Protein involved in vacuole import and d	96.62
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.61
PRK13684	334	Ycf48-like protein; Provisional	96.59
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.57
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.49
KOG2395	644	consensus Protein involved in vacuole import and d	96.48
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.48
PHA02713	557	hypothetical protein; Provisional	96.47
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.46
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.4
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.39
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.38
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.35
PHA02713	557	hypothetical protein; Provisional	96.34
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.3
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.1
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.08
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.06
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.03
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.02
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.99
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.86
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.83
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.64
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.56
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.5
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.43
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.22
KOG2444	238	consensus WD40 repeat protein [General function pr	95.07
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.03
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.88
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	94.76
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.73
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.57
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.56
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.42
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.42
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.23
PHA03098	534	kelch-like protein; Provisional	94.17
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.05
KOG2444	238	consensus WD40 repeat protein [General function pr	93.95
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	93.88
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.54
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.39
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.04
PHA03098	534	kelch-like protein; Provisional	93.03
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.76
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.68
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.61
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.45
PHA02790	480	Kelch-like protein; Provisional	92.43
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.36
COG3292	671	Predicted periplasmic ligand-binding sensor domain	92.26
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.07
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.05
COG1520	370	FOG: WD40-like repeat [Function unknown]	91.96
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.91
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.84
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.74
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.49
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.41
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.28
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.24
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.15
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.12
COG3292	671	Predicted periplasmic ligand-binding sensor domain	90.96
PHA02790	480	Kelch-like protein; Provisional	90.96
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.75
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.6
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.51
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.43
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.29
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.98
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	89.75
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	89.71
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.68
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	89.31
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	89.31
KOG2247	615	consensus WD40 repeat-containing protein [General	89.16
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.95
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	88.93
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.37
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	88.12
COG5167	776	VID27 Protein involved in vacuole import and degra	88.06
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	87.56
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	87.43
COG5276	370	Uncharacterized conserved protein [Function unknow	87.36
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.28
PRK13684	334	Ycf48-like protein; Provisional	87.04
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	87.02
COG5167	776	VID27 Protein involved in vacuole import and degra	86.99
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	86.84
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	86.67
COG4590	733	ABC-type uncharacterized transport system, permeas	86.62
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	86.55
COG4590	733	ABC-type uncharacterized transport system, permeas	86.16
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	86.01
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	85.63
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	85.45
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	85.06
PLN02193	470	nitrile-specifier protein	84.79
PRK13613	599	lipoprotein LpqB; Provisional	84.75
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	84.15
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	84.06
KOG3616	1636	consensus Selective LIM binding factor [Transcript	84.01
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.12
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.05
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	82.88
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	82.75
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	82.41
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	81.62

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.2e-71  Score=544.60  Aligned_cols=493  Identities=20%  Similarity=0.311  Sum_probs=415.7

Q ss_pred             hHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh---HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhh
Q 001352            5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD---MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF   81 (1093)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~   81 (1093)
                      +.|++|++.|+|+.+||.+|+.+||.|||+.++   .+.|.+++++|+|+.++..+..+. .++.....++.|++.||+|
T Consensus        17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f   95 (519)
T KOG0293|consen   17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF   95 (519)
T ss_pred             cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence            458999999999999999999999999999876   899999999999999999988773 3334556679999999999


Q ss_pred             hhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCcccccc
Q 001352           82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGK  161 (1093)
Q Consensus        82 lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~  161 (1093)
                      ||++..|...+|+.+||+...++. .+.++|++|+.-+..++.....+... .......|.+|+++|+++|||+++    
T Consensus        96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il----  169 (519)
T KOG0293|consen   96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL----  169 (519)
T ss_pred             HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence            999999999999999999888876 47888999988776654433333222 112367899999999999999999    


Q ss_pred             cCCCCCcchHHHHHHHHhHHhhhhcCCCCCCCCCCCCcceecccCCCCCCCcCCCCCCCCCCCCCCCCCCcccccCCccc
Q 001352          162 LKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLT  241 (1093)
Q Consensus       162 ~~~~~~p~~rL~~ll~qa~~~q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  241 (1093)
                           +|++||+.||+||+++|+.+|+||+ +.+..|||.||.|++      .++                         
T Consensus       170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------~qi-------------------------  212 (519)
T KOG0293|consen  170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------LQI-------------------------  212 (519)
T ss_pred             -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------ccC-------------------------
Confidence                 9999999999999999999999999 555589999999987      332                         


Q ss_pred             CcccccccccCCCCCcccccccCCCCCCCcccCCCcccccccCCCcceecCcCCCCcCCCCCCcccccccccccCCCccC
Q 001352          242 DSAVSFVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS  321 (1093)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~fsP~~s~~~~~~~~~~~~~~~  321 (1093)
                                                                                                      
T Consensus       213 --------------------------------------------------------------------------------  212 (519)
T KOG0293|consen  213 --------------------------------------------------------------------------------  212 (519)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE
Q 001352          322 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  401 (1093)
Q Consensus       322 ~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  401 (1093)
                        |....++|..|+++||.+.||++|+| ||+++.|.+..||++.....+.-                ...+.+|..+|.
T Consensus       213 --p~qt~qil~~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~  273 (519)
T KOG0293|consen  213 --PSQTWQILQDHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVS  273 (519)
T ss_pred             --CchhhhhHhhCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCcceee----------------eeeeecccCceE
Confidence              23344678889999999999999996 99999999999999876544211                122889999999


Q ss_pred             EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352          402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  481 (1093)
Q Consensus       402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  481 (1093)
                      .+.||||.+||++|+.+..+.+||+.+|.......  .+|...+.+++|.|||.  .+++|+.|++|..||+ .|..+..
T Consensus       274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdl-Dgn~~~~  348 (519)
T KOG0293|consen  274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDL-DGNILGN  348 (519)
T ss_pred             EEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecC-Ccchhhc
Confidence            99999999999999999999999999998766432  24668999999999999  7999999999999995 4555666


Q ss_pred             eecCC-CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352          482 FEGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  560 (1093)
Q Consensus       482 ~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i  560 (1093)
                      .++-. ..|.++++  +.||+++++.+.|..|++++.++...+. +.....+|++++.|.|++++++.-.    +..+.+
T Consensus       349 W~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~----~qei~L  421 (519)
T KOG0293|consen  349 WEGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQ----DQEIHL  421 (519)
T ss_pred             ccccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcc----cCeeEE
Confidence            65543 55888888  5688999999999999999988765553 3334568999999999999998765    455999


Q ss_pred             EeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec-CCCEEE
Q 001352          561 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLA  639 (1093)
Q Consensus       561 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~  639 (1093)
                      ||++....++.+.||.+....|.++.-..+..++++|++|+.|+||+..+|+++..+.+|..  .|++|+|+| +..++|
T Consensus       422 WDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~A  499 (519)
T KOG0293|consen  422 WDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFA  499 (519)
T ss_pred             eecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhh
Confidence            99999999999999986656666665556668999999999999999999999999998864  599999999 667899


Q ss_pred             EEECCCeEEEEEcCC
Q 001352          640 VIANENRIKILETPE  654 (1093)
Q Consensus       640 ~~~~dg~i~iw~~~~  654 (1093)
                      ++++||+|+||....
T Consensus       500 SasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  500 SASDDGTIRIWGPSD  514 (519)
T ss_pred             ccCCCCeEEEecCCc
Confidence            999999999998764

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.8e-62  Score=466.36  Aligned_cols=491  Identities=18%  Similarity=0.281  Sum_probs=399.2

Q ss_pred             hHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhh
Q 001352            5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN   80 (1093)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~   80 (1093)
                      ..||||||+|||+|+.+++++++||+|+++++|    +..|-+.|.+|+||.++..+++|      +++.+-+..||||.
T Consensus         7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEqi   80 (508)
T KOG0275|consen    7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQI   80 (508)
T ss_pred             cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHHH
Confidence            468999999999999999999999999999998    89999999999999999999998      44455678899999


Q ss_pred             hhhhccCCCHHHHHHHHHhh--ccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCccc
Q 001352           81 FFEALDGHDIAKALNILKKD--LKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPIL  158 (1093)
Q Consensus        81 ~lEll~~~~~~~A~~~l~~~--l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~  158 (1093)
                      .|||+|.++...|..+||+.  ..-+++.+|++|-+|+.|+..+.++.++.+.   +..++.|+..+.   +.++.++- 
T Consensus        81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~---dssKEkrRa~IA---Q~ls~EV~-  153 (508)
T KOG0275|consen   81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYG---DSSKEKRRAVIA---QALSGEVH-  153 (508)
T ss_pred             HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcC---cchHHHHHHHHH---HHhcCceE-
Confidence            99999999999999999984  3445566899999999999999999887743   356677665443   23333222 


Q ss_pred             ccccCCCCCcchHHHHHHHHhHHhhhhcCCCCCCCCCCCCcceecccCCCCCCCcCCCCCCCCCCCCCCCCCCcccccCC
Q 001352          159 QGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSS  238 (1093)
Q Consensus       159 ~~~~~~~~~p~~rL~~ll~qa~~~q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  238 (1093)
                             .+||+||+.||+||++||+++.+.|.                           +-  .++      .|++.. 
T Consensus       154 -------VVppSRLlaLlGQaLKWQqHQGLLPP---------------------------Gt--~iD------LFRGkA-  190 (508)
T KOG0275|consen  154 -------VVPPSRLLALLGQALKWQQHQGLLPP---------------------------GT--TID------LFRGKA-  190 (508)
T ss_pred             -------EcChHHHHHHHHHHhhhHhhcCCCCC---------------------------Cc--eee------eccchh-
Confidence                   28999999999999999999865542                           10  000      011000 


Q ss_pred             cccCcccccccccCCCCCcccccccCCCCCCCcccCCCcccccccCCCcceecCcCCCCcCCCCCCcccccccccccCCC
Q 001352          239 MLTDSAVSFVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGET  318 (1093)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~fsP~~s~~~~~~~~~~~~  318 (1093)
                                           +.         .            ...|-+||.+.                        
T Consensus       191 ---------------------A~---------K------------~~~Ee~~Pt~l------------------------  204 (508)
T KOG0275|consen  191 ---------------------AM---------K------------DQEEERYPTQL------------------------  204 (508)
T ss_pred             ---------------------hh---------h------------hhHhhhchHHh------------------------
Confidence                                 00         0            00111234333                        


Q ss_pred             ccCCchHHHHHhhc-cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCC
Q 001352          319 SFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG  397 (1093)
Q Consensus       319 ~~~~~p~~~~~~l~-~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  397 (1093)
                               .+.+. |.+..+.|..|||||+| |++|+.||-|.+||..+|+......++.-|-           +--+.
T Consensus       205 ---------~r~IKFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~-----------fMMmd  263 (508)
T KOG0275|consen  205 ---------ARSIKFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDN-----------FMMMD  263 (508)
T ss_pred             ---------hhheecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhhhcc-----------eeecc
Confidence                     33333 55668999999999996 9999999999999999999877544432110           33478


Q ss_pred             CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352          398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  477 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  477 (1093)
                      .+|.|+.||.|...||+|+.||.|+||.+.+|.+++.+.  +.|+..|+|+.||.|+.  -+++++.|.+++|.-+.+|+
T Consensus       264 ~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK  339 (508)
T KOG0275|consen  264 DAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGK  339 (508)
T ss_pred             cceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccch
Confidence            999999999999999999999999999999999998532  28999999999999999  58999999999999999999


Q ss_pred             eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CceEEEEEccC-CCEEEEEecCCCC
Q 001352          478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSAN-GRRLFSCGTSKEG  554 (1093)
Q Consensus       478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~s~d-~~~l~~~~~~~~~  554 (1093)
                      +++.++||...|+...|  .+||..+++++.||+|++|+..+.++..++...+  .+|.++..-|. ...+++|..    
T Consensus       340 ~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr----  413 (508)
T KOG0275|consen  340 CLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR----  413 (508)
T ss_pred             hHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC----
Confidence            99999999999999998  5688999999999999999999999888776544  36777777664 467777765    


Q ss_pred             ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC
Q 001352          555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  634 (1093)
Q Consensus       555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  634 (1093)
                      .+.|++.++. |+.++.+.......+...+++.+|.|.++++.++|+.++.|...+|++..++..+..  .+..++-+|.
T Consensus       414 sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHPH  490 (508)
T KOG0275|consen  414 SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHPH  490 (508)
T ss_pred             CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCcc
Confidence            5568998864 778888876655567788889999999999999999999999999999999988755  4788999999


Q ss_pred             CCEEEEEECCCeEEEEE
Q 001352          635 GTLLAVIANENRIKILE  651 (1093)
Q Consensus       635 ~~~l~~~~~dg~i~iw~  651 (1093)
                      .+.+|+-+.||.+++|.
T Consensus       491 qNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  491 QNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cchhhhhcccchhhhcC
Confidence            99999999999999995

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.7e-59  Score=496.02  Aligned_cols=577  Identities=19%  Similarity=0.258  Sum_probs=493.0

Q ss_pred             eeecCCCceEEEEEccCCcEEEEecCCCcee-EEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCC
Q 001352          341 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH  419 (1093)
Q Consensus       341 ~~~spdg~~llasg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~  419 (1093)
                      ++||++|+ +|++... ..|.+-|+.++... ...                  -......+++++.+||+++|++++..+
T Consensus        25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s~------------------~~ed~d~ita~~l~~d~~~L~~a~rs~   84 (775)
T KOG0319|consen   25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPSG------------------SNEDEDEITALALTPDEEVLVTASRSQ   84 (775)
T ss_pred             eeECCCCC-EEEEecC-ceEEEEEccCCceecccC------------------CccchhhhheeeecCCccEEEEeeccc
Confidence            99999999 4777543 45999999999873 210                  223567899999999999999999999


Q ss_pred             EEEEEEccCCCcccceEEecc-ccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccC
Q 001352          420 IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE  498 (1093)
Q Consensus       420 ~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  498 (1093)
                      .+++|++.+|+.++   .++. |++||.-++|+|.+.  ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|+|..
T Consensus        85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~  159 (775)
T KOG0319|consen   85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW  159 (775)
T ss_pred             eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence            99999999998877   4555 999999999999997  89999999999999999999999999999999999999998


Q ss_pred             CccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc
Q 001352          499 NIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL  577 (1093)
Q Consensus       499 ~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~  577 (1093)
                      +...|++|..|+++++||+..... ......|.+.|++++|++|+..+++++.    +..+.+||+.+.+..+++...+ 
T Consensus       160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye-  234 (775)
T KOG0319|consen  160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE-  234 (775)
T ss_pred             chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence            888999999999999999996555 6678889999999999999999999987    7789999998877777776544 


Q ss_pred             cCCCeEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352          578 QHNSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  652 (1093)
Q Consensus       578 ~~~~v~~v~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  652 (1093)
                         .+.++.+-++     +.+++++|.+|.+++||.++++++....... .+.+..+...+....++..+.+..+.++|.
T Consensus       235 ---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~  310 (775)
T KOG0319|consen  235 ---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDE  310 (775)
T ss_pred             ---heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEc
Confidence               6777777777     6799999999999999999998876655443 233666666666666777788899999999


Q ss_pred             CCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCcc
Q 001352          653 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK  732 (1093)
Q Consensus       653 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~  732 (1093)
                      .+.+....+-|..+.|..+.|-                     .|+.++++.++..+.+|+++...   ..|.  .+  .
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~l---------------------G~e~~~laVATNs~~lr~y~~~~---~~c~--ii--~  362 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFL---------------------GPEESHLAVATNSPELRLYTLPT---SYCQ--II--P  362 (775)
T ss_pred             cccEEehhhcCCchhheeeeec---------------------CCccceEEEEeCCCceEEEecCC---CceE--EE--e
Confidence            9999999999999999988886                     57889999999999999997553   2333  22  3


Q ss_pred             ccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc
Q 001352          733 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  812 (1093)
Q Consensus       733 ~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  812 (1093)
                      +|...|.++....+|-++++++.|..+++|+++.+...                  .  ...  -...+|...|.+++++
T Consensus       363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~------------------~--~~~--a~~~gH~~svgava~~  420 (775)
T KOG0319|consen  363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK------------------S--LCV--AQANGHTNSVGAVAGS  420 (775)
T ss_pred             CchhheeeeeecccCcEEEEecCCceEEEEEecCCcch------------------h--hhh--hhhcccccccceeeec
Confidence            59999999998888889999999999999998432110                  0  000  1112599999999998


Q ss_pred             cCC-CEEEEEe-CCeEEEEEccCceeE-----E----EECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceee
Q 001352          813 KND-AYLFSAS-GGVISLYIVMTFKTI-----L----TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  881 (1093)
Q Consensus       813 ~dg-~~la~~~-dg~i~iwd~~~~~~~-----~----~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~  881 (1093)
                      ..+ .++++++ |.++++|++...+..     .    +...|...|+|++++| +.+++|||+.|++.+||+++.++...
T Consensus       421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~  499 (775)
T KOG0319|consen  421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLG  499 (775)
T ss_pred             ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEE
Confidence            776 5777777 799999999752211     1    2346899999999999 89999999999999999999999999


Q ss_pred             ecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeE
Q 001352          882 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL  960 (1093)
Q Consensus       882 ~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i  960 (1093)
                      ++.||...|.++.|+|..+.++|+|.|++|+||.+++     ..++++++||..   .|..+.|-.+|+.|++ ++||-+
T Consensus       500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGli  571 (775)
T KOG0319|consen  500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLI  571 (775)
T ss_pred             EeeCCccceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcE
Confidence            9999999999999999999999999999999999999     558999999987   8999999999999999 799999


Q ss_pred             EEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001352          961 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus       961 ~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
                      ++|++.+++|... +.+|..+|+++.-++++.+++||+.||.|.+|.=.+.
T Consensus       572 KlWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  572 KLWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             EEEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence            9999999999998 6789999999999999999999999999999975554

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.7e-55  Score=466.64  Aligned_cols=584  Identities=14%  Similarity=0.182  Sum_probs=472.9

Q ss_pred             cCCCCCCcccccccccccCCCccCCchHHH--HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEee
Q 001352          298 IPDYSPKSSLKKEMFQSFGETSFSDFPKTV--AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN  375 (1093)
Q Consensus       298 ~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~--~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~  375 (1093)
                      -..|+|++..+.-...+... .++.-+...  ...-.+-.+.+++++.+||+++ |++++..+.+++|++.+|+.++.  
T Consensus        24 ~~~~s~nG~~L~t~~~d~Vi-~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs--   99 (775)
T KOG0319|consen   24 PVAWSSNGQHLYTACGDRVI-IIDVATGSIALPSGSNEDEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS--   99 (775)
T ss_pred             ceeECCCCCEEEEecCceEE-EEEccCCceecccCCccchhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh--
Confidence            46777777766554443100 011111111  1122345678999999999985 88889999999999999987764  


Q ss_pred             eeeeecccccceeeeeeecC-CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCC
Q 001352          376 FKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC  454 (1093)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~  454 (1093)
                                       .+. |+.||.-++|+|.|..||+|+.|+.|+|||+..+.+..   .++||.+.|.++.|.|+-
T Consensus       100 -----------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~  159 (775)
T KOG0319|consen  100 -----------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHW  159 (775)
T ss_pred             -----------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCcc
Confidence                             334 99999999999999999999999999999999986555   799999999999999998


Q ss_pred             CcEEEEEEcCCCcEEEEECCCCce-eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCce
Q 001352          455 KQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGC  533 (1093)
Q Consensus       455 ~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v  533 (1093)
                      ....|++|+.|+++++||+.++.. +..+..|.+.|+++++.+  |+..+++++.|..+.+||+...+...+.+.. ..+
T Consensus       160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~  236 (775)
T KOG0319|consen  160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESL  236 (775)
T ss_pred             chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechh-hhe
Confidence            766799999999999999996654 888899999999999954  5789999999999999999665555444332 245


Q ss_pred             EEEEEccC-----CCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001352          534 TRMAYSAN-----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  608 (1093)
Q Consensus       534 ~~~~~s~d-----~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~  608 (1093)
                      .++.+-++     |.++++++.    ++.+++||.+++++........  ...+..+...+....+++...|..+.++|.
T Consensus       237 E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~  310 (775)
T KOG0319|consen  237 ESVVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQNLFLYDE  310 (775)
T ss_pred             eeEEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCC--chhhhcceeccccCceEEEEccceEEEEEc
Confidence            56666666     668888875    7779999999998877665543  233666666667778888888999999999


Q ss_pred             CCCceEEEEecCCCCCCCceEEEe-cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCC
Q 001352          609 NKVQLLTTIDAGGGLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  687 (1093)
Q Consensus       609 ~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  687 (1093)
                      ++.+....+-+..  ..|..++|- |+.++|++++..+.+++|+..+..+. .+.+|.+.|.++...             
T Consensus       311 ~~l~i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~-------------  374 (775)
T KOG0319|consen  311 DELTIVKQIVGYN--DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVW-------------  374 (775)
T ss_pred             cccEEehhhcCCc--hhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeec-------------
Confidence            9999988887553  468888864 68899999999999999998887665 888999999887743             


Q ss_pred             ceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCc-eEEEeeccceeEEeeecC
Q 001352          688 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPR  766 (1093)
Q Consensus       688 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~v~vw~~~~  766 (1093)
                               ..|-++++++.|+++++|.++....  .........+|.+.|.+++++..+. .+++++.|+++++|+++.
T Consensus       375 ---------~~g~llat~sKD~svilWr~~~~~~--~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~  443 (775)
T KOG0319|consen  375 ---------SSGDLLATGSKDKSVILWRLNNNCS--KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK  443 (775)
T ss_pred             ---------ccCcEEEEecCCceEEEEEecCCcc--hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCC
Confidence                     4567899999999999999832211  1111222357999999999987664 567888999999999987


Q ss_pred             cccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCC
Q 001352          767 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP  845 (1093)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~  845 (1093)
                      .+....        +.         ..........|...|.|++++|+.+++|+|+ |.+.+||+++.+....++.+|..
T Consensus       444 s~~~~~--------~~---------~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R  506 (775)
T KOG0319|consen  444 SKETAF--------PI---------VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR  506 (775)
T ss_pred             cccccc--------cc---------eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc
Confidence            321100        00         1111122335999999999999999999999 79999999999999999999999


Q ss_pred             CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 001352          846 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR  925 (1093)
Q Consensus       846 ~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~  925 (1093)
                      .+.++.|+| ..+.+||+|.|++|+||.+.+..++++|.||+..|..+.|-.+|+.|+|++.||.|++|++++++     
T Consensus       507 Gvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e-----  580 (775)
T KOG0319|consen  507 GVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE-----  580 (775)
T ss_pred             ceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh-----
Confidence            999999999 88999999999999999999999999999999999999999999999999999999999999965     


Q ss_pred             eeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCC
Q 001352          926 SLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE  967 (1093)
Q Consensus       926 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~  967 (1093)
                      +....+.|..   .|.+++.+|++.++++ +.|+.|.+|.=.+
T Consensus       581 C~~tlD~H~D---rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  581 CEMTLDAHND---RVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             hhhhhhhccc---eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            7778888886   8999999999999998 6899999996443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.9e-52  Score=427.34  Aligned_cols=575  Identities=15%  Similarity=0.193  Sum_probs=462.7

Q ss_pred             eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC
Q 001352          339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  418 (1093)
Q Consensus       339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d  418 (1093)
                      .-+.-.|.|+.++.+.+  ..|.+-++++......                   +.+|..+++-..|||.|-|+|+|...
T Consensus        22 ~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~i-------------------YtEH~~~vtVAkySPsG~yiASGD~s   80 (603)
T KOG0318|consen   22 IIIGGDPKGDNILYTNG--KSVIIRNIDNPASVDI-------------------YTEHAHQVTVAKYSPSGFYIASGDVS   80 (603)
T ss_pred             eEeccCCCCCeEEEeCC--CEEEEEECCCccceee-------------------eccccceeEEEEeCCCceEEeecCCc
Confidence            34556788887777644  6788888887665433                   78899999999999999999999999


Q ss_pred             CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEE--cCCCcEEEEECCCCceeEEeecCCCCeEEeeecc
Q 001352          419 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  496 (1093)
Q Consensus       419 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~--~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~  496 (1093)
                      |+|+|||....+.+.. .++..-.++|.+++|+.|+++  ++..  +.++..+++-.++|..+-.+.||...|+++.|-|
T Consensus        81 G~vRIWdtt~~~hiLK-nef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kp  157 (603)
T KOG0318|consen   81 GKVRIWDTTQKEHILK-NEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKP  157 (603)
T ss_pred             CcEEEEeccCcceeee-eeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccC
Confidence            9999999987543322 256678899999999999995  4443  3444455555678999999999999999999977


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc
Q 001352          497 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  576 (1093)
Q Consensus       497 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  576 (1093)
                      +.. -.+++|+.|++|.+|+=...+-...+..|..-|.++.|+|||.++++++.    |+.+++||-.+|+.+..+....
T Consensus       158 sRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~  232 (603)
T KOG0318|consen  158 SRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSD  232 (603)
T ss_pred             CCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCC
Confidence            644 57999999999999987766677778888889999999999999999987    6779999999999999999655


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCC-CceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352          577 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE-NPRICFNKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       577 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      .|.+.|.+++|+||+.++++++.|.+++|||+.+.+++.++........ ...+.|.  +..|++.+.+|.|.+++....
T Consensus       233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~  310 (603)
T KOG0318|consen  233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP  310 (603)
T ss_pred             CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence            5669999999999999999999999999999999999999987654211 1233444  668999999999999999999


Q ss_pred             ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccc
Q 001352          656 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA  735 (1093)
Q Consensus       656 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  735 (1093)
                      ..+..+.+|...|++++.+                      +|++++++++.||.|.-|+...+....     +....|.
T Consensus       311 ~~~~~i~GHnK~ITaLtv~----------------------~d~~~i~SgsyDG~I~~W~~~~g~~~~-----~~g~~h~  363 (603)
T KOG0318|consen  311 SVLKVISGHNKSITALTVS----------------------PDGKTIYSGSYDGHINSWDSGSGTSDR-----LAGKGHT  363 (603)
T ss_pred             ChhheecccccceeEEEEc----------------------CCCCEEEeeccCceEEEEecCCccccc-----ccccccc
Confidence            9999999999999999996                      788999999999999999987554332     3334589


Q ss_pred             cceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCC
Q 001352          736 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  815 (1093)
Q Consensus       736 ~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg  815 (1093)
                      ..|.+++.+..+. +++.+.|.++++.++..+......                  .  .+     -.....+++..+|+
T Consensus       364 nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~------------------~--~~-----lg~QP~~lav~~d~  417 (603)
T KOG0318|consen  364 NQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE------------------V--VK-----LGSQPKGLAVLSDG  417 (603)
T ss_pred             ceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc------------------e--ee-----cCCCceeEEEcCCC
Confidence            9999999988776 788888889988776443221100                  0  11     12233488999999


Q ss_pred             CEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce--eeecccccCCeEEE
Q 001352          816 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGHSKRVTGL  893 (1093)
Q Consensus       816 ~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~--~~~l~~h~~~V~~l  893 (1093)
                      .+++.+.++.|.+..-.++  +.... ..-...++|++| ++..+|+|+.||.|+||.+..+..  ...+..|.++|+++
T Consensus       418 ~~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v  493 (603)
T KOG0318|consen  418 GTAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV  493 (603)
T ss_pred             CEEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE
Confidence            8888888766666653222  22222 345678999999 999999999999999999987653  34566799999999


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceee
Q 001352          894 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLK  972 (1093)
Q Consensus       894 ~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~  972 (1093)
                      ++|||+.+||++...+.+.+||+.+.+....    ...-|.   ..|.+++|||+.+++|+ +-|..|.||++.......
T Consensus       494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~~----~w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i  566 (603)
T KOG0318|consen  494 AYSPDGAYLAAGDASRKVVLYDVASREVKTN----RWAFHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHI  566 (603)
T ss_pred             EECCCCcEEEEeccCCcEEEEEcccCceecc----eeeeee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhhe
Confidence            9999999999999999999999999764221    111233   37999999999999999 579999999999877666


Q ss_pred             eeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001352          973 QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus       973 ~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
                      ....+|...|+.+.|- |...|++.+.|..|++|++.
T Consensus       567 ~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  567 IIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence            6678898889999997 45678899999999999875

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.1e-50  Score=427.85  Aligned_cols=591  Identities=17%  Similarity=0.209  Sum_probs=455.4

Q ss_pred             CcCCCC-cCCCCCCcc-cccccccccCCCccCCchHHHHHhhc-cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCC
Q 001352          292 GVSLKN-IPDYSPKSS-LKKEMFQSFGETSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG  368 (1093)
Q Consensus       292 ~~~~~~-~~~fsP~~s-~~~~~~~~~~~~~~~~~p~~~~~~l~-~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~  368 (1093)
                      +.+|.. .+.|+|++. .+...   .+...+.++.+....||. .+...|++++.||+|. +|++....|...+-+....
T Consensus        12 GTvyr~Gnl~ft~dG~sviSPv---GNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r   87 (893)
T KOG0291|consen   12 GTVYRAGNLVFTKDGNSVISPV---GNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSR   87 (893)
T ss_pred             cceeecCcEEECCCCCEEEecc---CCEEEEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccc
Confidence            344433 567777733 22211   112233333344444544 4566999999999998 5666678899999999888


Q ss_pred             ceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCc-----ccceEEeccccc
Q 001352          369 QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVG  443 (1093)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~h~~  443 (1093)
                      ..++.++|                    +.+|.|+.|||||+++|+|..+ .+.||.......     .....++.+|-.
T Consensus        88 ~Vlh~f~f--------------------k~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fd  146 (893)
T KOG0291|consen   88 SVLHRFNF--------------------KRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFD  146 (893)
T ss_pred             eeeEEEee--------------------cCccceEEECCCCcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCcc
Confidence            88876554                    4789999999999999998654 599998764322     233446779999


Q ss_pred             cEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce--eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC--
Q 001352          444 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS--  519 (1093)
Q Consensus       444 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~--  519 (1093)
                      .|.++.|+.|.+  ++++|+.|.++++|+++..+-  .+.+.+|...|..+-|  ..|...+++.+.||.+.+|....  
T Consensus       147 di~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P  222 (893)
T KOG0291|consen  147 DITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFF--GANSLDLYTVSKDGALFVWTCDLRP  222 (893)
T ss_pred             ceeEEEeccCCc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEe--ccCcceEEEEecCceEEEEEecCCC
Confidence            999999999999  899999999999999987666  5678899999998877  44557899999999999997761  


Q ss_pred             ---------------------CCc-----------eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352          520 ---------------------LGA-----------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  567 (1093)
Q Consensus       520 ---------------------~~~-----------~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~  567 (1093)
                                           ++.           ...+......+++.+|++..+.|+++-.    .+...+|++....
T Consensus       223 ~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~  298 (893)
T KOG0291|consen  223 PELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFN  298 (893)
T ss_pred             cccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec----CCeeEEEecCCce
Confidence                                 111           0111223357899999999999999876    4458899999999


Q ss_pred             eeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCe
Q 001352          568 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  646 (1093)
Q Consensus       568 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  646 (1093)
                      +++.+.-..   .+|..++|+..|.+++.|+ .-|.+.||+..+..-+....+|  ...+.+++++|||+++|+|++||.
T Consensus       299 lih~LSis~---~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgK  373 (893)
T KOG0291|consen  299 LIHSLSISD---QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGK  373 (893)
T ss_pred             EEEEeeccc---ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc--ccceeeEEECCCCcEEEeccCCCc
Confidence            998888765   7899999999999999966 5589999999887776665544  567999999999999999999999


Q ss_pred             EEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccc
Q 001352          647 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  726 (1093)
Q Consensus       647 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~  726 (1093)
                      |+|||..++-++.++..                                                               
T Consensus       374 VKvWn~~SgfC~vTFte---------------------------------------------------------------  390 (893)
T KOG0291|consen  374 VKVWNTQSGFCFVTFTE---------------------------------------------------------------  390 (893)
T ss_pred             EEEEeccCceEEEEecc---------------------------------------------------------------
Confidence            99999998877766654                                                               


Q ss_pred             cccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCe
Q 001352          727 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  806 (1093)
Q Consensus       727 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  806 (1093)
                             |.+.|+.+.|+..|+.+++.+-||+|+.||+...                      .+..++..|   .....
T Consensus       391 -------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY----------------------rNfRTft~P---~p~Qf  438 (893)
T KOG0291|consen  391 -------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY----------------------RNFRTFTSP---EPIQF  438 (893)
T ss_pred             -------CCCceEEEEEEecCCEEEEeecCCeEEeeeeccc----------------------ceeeeecCC---Cceee
Confidence                   5566777777888888888888888888876432                      223333332   45567


Q ss_pred             eEEEEccCCCEEEEEe-C-CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-ceeeec
Q 001352          807 PCFALSKNDAYLFSAS-G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKL  883 (1093)
Q Consensus       807 ~~l~~s~dg~~la~~~-d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~-~~~~~l  883 (1093)
                      .|++..|.|.+++.|+ | =.|.+|++++|+.+..+.+|.++|.+++|+| ++..||+|+.|.+|++||+-.. ..+.++
T Consensus       439 scvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl  517 (893)
T KOG0291|consen  439 SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETL  517 (893)
T ss_pred             eEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeE
Confidence            8999999999999988 4 4599999999999999999999999999999 8999999999999999998654 344555


Q ss_pred             ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeee----------eee--ecCCCcccCCCCceEEEEccCCCE
Q 001352          884 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC----------RSL--QTPDGVMTLAPSETHIQFHKDQTR  951 (1093)
Q Consensus       884 ~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~----------~~~--~~~~~~~~~~~~v~~~~~s~dg~~  951 (1093)
                      + +...+..++|+|||+.|+++.-||.|.+||...+.....          +..  .....+.......+.+++|+||..
T Consensus       518 ~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~  596 (893)
T KOG0291|consen  518 E-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKC  596 (893)
T ss_pred             e-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCE
Confidence            5 777899999999999999999999999999986543310          000  000111122257899999999999


Q ss_pred             EEE-EeCCeEEEEEcCCcceeeeeecC----------------------------------------------------C
Q 001352          952 FLL-VHETHLAIYEAEELTCLKQWFPI----------------------------------------------------S  978 (1093)
Q Consensus       952 l~~-~~d~~i~vwd~~~~~~~~~~~~~----------------------------------------------------h  978 (1093)
                      +++ |..+.|++|++.++..++.+...                                                    +
T Consensus       597 IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr  676 (893)
T KOG0291|consen  597 ILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRR  676 (893)
T ss_pred             EEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccc
Confidence            998 67789999999887665543211                                                    0


Q ss_pred             ---CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352          979 ---SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       979 ---~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                         .-+|.++.|||.|+-++.++..| +.||.+++.-....+.
T Consensus       677 ~rpeIrv~sv~fsPtgraFAaatTEG-l~IYsld~~~~FDPf~  718 (893)
T KOG0291|consen  677 FRPEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDTTILFDPFD  718 (893)
T ss_pred             cCceEEEEEEEECCCcCeeeeecccc-eEEEecCCceEEcccc
Confidence               12578899999999999999987 8899998876654443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=6.5e-50  Score=408.85  Aligned_cols=541  Identities=12%  Similarity=0.199  Sum_probs=433.2

Q ss_pred             HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      ...+.+|...++-+.|||.|- ++|+|...|.|+|||....+.+...+|+                 .-.++|..++|++
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~  113 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDF  113 (603)
T ss_pred             eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCC
Confidence            345678999999999999997 4999999999999999886666544433                 3568999999999


Q ss_pred             CCCEEEEEEcC--CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecC
Q 001352          408 DGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  485 (1093)
Q Consensus       408 dg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h  485 (1093)
                      |+++|++.+..  +-.+++-+++|..+.   ++.||...|++++|-|.... .++||+.|++|.+|+-.--+...++..|
T Consensus       114 ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~H  189 (603)
T KOG0318|consen  114 DSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREH  189 (603)
T ss_pred             CCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccc
Confidence            99999887543  334444444554444   78899999999999998765 8999999999999986666777888899


Q ss_pred             CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001352          486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  562 (1093)
Q Consensus       486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd  562 (1093)
                      ...|+++.|+|  ||.++++++.||.+.+||=.+++....+.   .|.+.|.+++|+||+..+++++.    +..+++||
T Consensus       190 skFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWd  263 (603)
T KOG0318|consen  190 SKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWD  263 (603)
T ss_pred             ccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEE
Confidence            99999999955  68899999999999999999999988887   78899999999999999999987    66799999


Q ss_pred             CCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEE
Q 001352          563 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  642 (1093)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  642 (1093)
                      +.+.++++++.....-.+....+.|.  +..|++.+.+|+|.+++...+..+..+.+|.  ..|++++.+|++.+|++|+
T Consensus       264 Vs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~~~i~Sgs  339 (603)
T KOG0318|consen  264 VSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDGKTIYSGS  339 (603)
T ss_pred             eeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCCCEEEeec
Confidence            99999999987655222444455565  5689999999999999999999888888764  4699999999999999999


Q ss_pred             CCCeEEEEEcCCCceeeec-ccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccC
Q 001352          643 NENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP  721 (1093)
Q Consensus       643 ~dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~  721 (1093)
                      .||.|.-|+..++..-... ++|...|.+++.+                       +...+++.+.|.++++.++.....
T Consensus       340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-----------------------~~~~~~t~g~Dd~l~~~~~~~~~~  396 (603)
T KOG0318|consen  340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-----------------------ESGELFTIGWDDTLRVISLKDNGY  396 (603)
T ss_pred             cCceEEEEecCCccccccccccccceEEEEeec-----------------------CCCcEEEEecCCeEEEEecccCcc
Confidence            9999999999988665544 6788888777765                       235577888999999987643333


Q ss_pred             ccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCC
Q 001352          722 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN  801 (1093)
Q Consensus       722 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  801 (1093)
                      .......+.     ..-.+++..+++..++.+...+.+.+-+...                         +....     
T Consensus       397 t~~~~~~lg-----~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-------------------------~~~~~-----  441 (603)
T KOG0318|consen  397 TKSEVVKLG-----SQPKGLAVLSDGGTAVVACISDIVLLQDQTK-------------------------VSSIP-----  441 (603)
T ss_pred             cccceeecC-----CCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------------ceeec-----
Confidence            222222211     2233788888887666666655544422111                         11111     


Q ss_pred             CCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCcee--EEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352          802 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  878 (1093)
Q Consensus       802 ~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~  878 (1093)
                      -.....+++++|++..+|+|+ |+.|+||.+..+..  ...+..|.++|++++||| |+.+||+|...+.+.+||+.+.+
T Consensus       442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~  520 (603)
T KOG0318|consen  442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASRE  520 (603)
T ss_pred             cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCc
Confidence            345677999999999999998 79999999987553  334567999999999999 99999999999999999999987


Q ss_pred             eeee-cccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeC
Q 001352          879 VISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE  957 (1093)
Q Consensus       879 ~~~~-l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d  957 (1093)
                      .... +.-|+++|.|++|||+.+++|||+-|-.|.||+++...    ..+.....|..   .|+.+.|-.+...+-+|.|
T Consensus       521 ~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~----~~i~iknAH~~---gVn~v~wlde~tvvSsG~D  593 (603)
T KOG0318|consen  521 VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA----KHIIIKNAHLG---GVNSVAWLDESTVVSSGQD  593 (603)
T ss_pred             eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh----hheEecccccc---CceeEEEecCceEEeccCc
Confidence            6433 33499999999999999999999999999999998743    22444555554   5999999999888888999


Q ss_pred             CeEEEEEcC
Q 001352          958 THLAIYEAE  966 (1093)
Q Consensus       958 ~~i~vwd~~  966 (1093)
                      ..|++|++.
T Consensus       594 a~iK~W~v~  602 (603)
T KOG0318|consen  594 ANIKVWNVT  602 (603)
T ss_pred             ceeEEeccc
Confidence            999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4e-49  Score=419.44  Aligned_cols=573  Identities=15%  Similarity=0.211  Sum_probs=460.7

Q ss_pred             EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352          402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  481 (1093)
Q Consensus       402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  481 (1093)
                      .+.|++||..+++-..+ .|.++|+...+....   .-.+...|++++.||+|.  ++++....|.+.+-++.....++.
T Consensus        19 nl~ft~dG~sviSPvGN-rvsv~dLknN~S~Tl---~~e~~~NI~~ialSp~g~--lllavdE~g~~~lvs~~~r~Vlh~   92 (893)
T KOG0291|consen   19 NLVFTKDGNSVISPVGN-RVSVFDLKNNKSYTL---PLETRYNITRIALSPDGT--LLLAVDERGRALLVSLLSRSVLHR   92 (893)
T ss_pred             cEEECCCCCEEEeccCC-EEEEEEccCCcceeE---EeecCCceEEEEeCCCce--EEEEEcCCCcEEEEecccceeeEE
Confidence            48899999999987655 499999998764332   224778899999999999  889999999999999988888888


Q ss_pred             eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC--------ceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001352          482 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--------ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  553 (1093)
Q Consensus       482 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~  553 (1093)
                      +. ...+|.+++|+|  ||.+++. +..+.+.+|......        ...++.+|-..+.++.|+.|.+++++++.   
T Consensus        93 f~-fk~~v~~i~fSP--ng~~fav-~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr---  165 (893)
T KOG0291|consen   93 FN-FKRGVGAIKFSP--NGKFFAV-GCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR---  165 (893)
T ss_pred             Ee-ecCccceEEECC--CCcEEEE-EecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---
Confidence            76 678899999955  6655555 456789999764322        23356777889999999999999999986   


Q ss_pred             CceeEEEEeCCCCee--eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---------------------
Q 001352          554 GESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---------------------  610 (1093)
Q Consensus       554 ~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~---------------------  610 (1093)
                       |..+++|+++..+-  ...+.+|.   +.|.++.|..+...+++.+.||.+.+|....                     
T Consensus       166 -D~s~rl~~v~~~k~~~~~~l~gHk---d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~  241 (893)
T KOG0291|consen  166 -DLSARLFGVDGNKNLFTYALNGHK---DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD  241 (893)
T ss_pred             -cceEEEEEeccccccceEeccCCC---cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence             77799999887665  55667777   9999999999999999999999999998761                     


Q ss_pred             --Cce-----E----EEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCce
Q 001352          611 --VQL-----L----TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  679 (1093)
Q Consensus       611 --~~~-----~----~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  679 (1093)
                        ++.     .    ...-.......+++.+|++..+.|+++-..|.+.+|++..-..+..+.....+|..++++..   
T Consensus       242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~t---  318 (893)
T KOG0291|consen  242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNST---  318 (893)
T ss_pred             ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEeccc---
Confidence              111     0    01111112246889999999999999999999999999999999999988888988888744   


Q ss_pred             eeeeccCCceEecCCCCCCCccceeeccc-ccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccce
Q 001352          680 TGAGIANGSVSVNEDPKEDVKPEISVEAE-NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV  758 (1093)
Q Consensus       680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~  758 (1093)
                                         |.+++.|+.. |.+-+|+.+.      ..+.+..++|...+.+++++|||+++++|+.||.
T Consensus       319 -------------------GDWiA~g~~klgQLlVweWqs------EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK  373 (893)
T KOG0291|consen  319 -------------------GDWIAFGCSKLGQLLVWEWQS------ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK  373 (893)
T ss_pred             -------------------CCEEEEcCCccceEEEEEeec------cceeeeccccccceeeEEECCCCcEEEeccCCCc
Confidence                               4455544433 7888898653      3455566779999999999999999999999998


Q ss_pred             eEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeE
Q 001352          759 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI  837 (1093)
Q Consensus       759 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~  837 (1093)
                      |+||+                      ..+|.|+.++.-    |...|+.+.|+.+|+.+++.+ ||+|+.||+...+..
T Consensus       374 VKvWn----------------------~~SgfC~vTFte----Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf  427 (893)
T KOG0291|consen  374 VKVWN----------------------TQSGFCFVTFTE----HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF  427 (893)
T ss_pred             EEEEe----------------------ccCceEEEEecc----CCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee
Confidence            88865                      567788888764    999999999999999999998 999999999999999


Q ss_pred             EEECCCCC-CeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q 001352          838 LTIMPPSP-TATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  915 (1093)
Q Consensus       838 ~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg-~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd  915 (1093)
                      +++..+.. ...|++..| .|.++.+|+.|. .|.+|++++|+.+..+.||.++|.+++|+|++..|||+|.|++|++||
T Consensus       428 RTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~  506 (893)
T KOG0291|consen  428 RTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD  506 (893)
T ss_pred             eeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence            99986553 678999999 899999999887 899999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeee------cC-----------
Q 001352          916 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWF------PI-----------  977 (1093)
Q Consensus       916 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~------~~-----------  977 (1093)
                      +-...... ..++..       ..+..++|+|||+.||+ .-||.|.+||+..+..+..+.      .+           
T Consensus       507 if~s~~~v-Etl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~  578 (893)
T KOG0291|consen  507 IFSSSGTV-ETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN  578 (893)
T ss_pred             eeccCcee-eeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence            97642111 122222       14889999999999999 689999999998765543211      11           


Q ss_pred             --CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccc---------------------------------
Q 001352          978 --SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY--------------------------------- 1022 (1093)
Q Consensus       978 --h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~--------------------------------- 1022 (1093)
                        .....+.++||+||.++++||....|++|+++++.+++++..+..                                 
T Consensus       579 sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~  658 (893)
T KOG0291|consen  579 SAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEG  658 (893)
T ss_pred             cccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccc
Confidence              156889999999999999999999999999999999887771111                                 


Q ss_pred             -----cCCCC--------CCCccceeEEEeCCCCCCEEEEEeCCCc
Q 001352         1023 -----LRPTT--------SCLHVYPHAIAAHPLKPTQFAVGLTNGE 1055 (1093)
Q Consensus      1023 -----~~~~~--------~~~~v~~~~~~~~p~d~~~l~~~~~dg~ 1055 (1093)
                           +|...        ....|....+.|+|. |+-+|+++..|-
T Consensus       659 ~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPt-graFAaatTEGl  703 (893)
T KOG0291|consen  659 RIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPT-GRAFAAATTEGL  703 (893)
T ss_pred             cccccCCccccCCccccccCceEEEEEEEECCC-cCeeeeecccce
Confidence                 11110        011466788999994 888999988884

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.1e-48  Score=411.52  Aligned_cols=575  Identities=15%  Similarity=0.180  Sum_probs=446.4

Q ss_pred             Cceeeee-cCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352          337 SPMSMDF-HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  415 (1093)
Q Consensus       337 ~V~~~~~-spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~  415 (1093)
                      ++..+.. +..|+++.+  +....|.+||+.+|+......                 ...-...|+|+.-+||.-+||+|
T Consensus        23 N~~~~~~~~~~Gr~va~--~a~E~vn~WdlRtge~~~~l~-----------------~~~~k~evt~l~~~~d~l~lAVG   83 (888)
T KOG0306|consen   23 NINFVVKRSGKGRAVAV--SALEQVNIWDLRTGEIEKKLI-----------------LLKKKAEVTCLRSSDDILLLAVG   83 (888)
T ss_pred             ceeEEEeecCCCcEEEE--eccccEeEEeeecchhhhhhh-----------------hhcccceEEEeeccCCcceEEEE
Confidence            3444333 345875333  344689999999995543211                 22344689999999999999999


Q ss_pred             EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeec
Q 001352          416 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  495 (1093)
Q Consensus       416 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  495 (1093)
                      ..||.|+||+..++...   .++.||...|+++.|...|.  .|+|||.|+.|.+||+-...-+..+.||...|+.+-|.
T Consensus        84 YaDGsVqif~~~s~~~~---~tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~  158 (888)
T KOG0306|consen   84 YADGSVQIFSLESEEIL---ITFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL  158 (888)
T ss_pred             ecCceEEeeccCCCcee---eeecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence            99999999999987533   37889999999999999999  89999999999999999999999999999999988774


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC---------
Q 001352          496 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG---------  566 (1093)
Q Consensus       496 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~---------  566 (1093)
                      .  +..++++.+.|+.|++||+.+..+..+...|.+.+..+++.+  +.+++++.    +..+.+|++...         
T Consensus       159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~  230 (888)
T KOG0306|consen  159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRY  230 (888)
T ss_pred             C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeeccccccccccc
Confidence            3  457999999999999999999999999999999999999988  66777665    455999988211         


Q ss_pred             ---eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE-------------EE--ec---------
Q 001352          567 ---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT-------------TI--DA---------  619 (1093)
Q Consensus       567 ---~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------~~--~~---------  619 (1093)
                         +...++...  ..+....+...++++++++-+.|..+.++.+.+.+.+.             ..  ..         
T Consensus       231 ~s~~~~G~~~rq--sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~  308 (888)
T KOG0306|consen  231 ISTKLRGTFIRQ--SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS  308 (888)
T ss_pred             ceeeccceeeec--cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence               011112111  13445566677788899999999999999886532110             00  00         


Q ss_pred             --------CCCCCCCceEEEecCCC---EEEEEECCCeEEEEEcCCCcee---------eecccccccceeeeecCCCce
Q 001352          620 --------GGGLPENPRICFNKNGT---LLAVIANENRIKILETPESNSV---------DAAGVLSDNLRKLSVNPISTV  679 (1093)
Q Consensus       620 --------~~~~~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~  679 (1093)
                              -.....+.++.|-|.++   .|+. -.++++.+|.+......         ..+.+|...|.+++++     
T Consensus       309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS-----  382 (888)
T KOG0306|consen  309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS-----  382 (888)
T ss_pred             HHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee-----
Confidence                    00112356677766443   2333 66788888887752222         3456888889888887     


Q ss_pred             eeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecccee
Q 001352          680 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH  759 (1093)
Q Consensus       680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v  759 (1093)
                                       .+...++++ ..+.+++|+..+....+..        ..+.+.+..|-|.+++++.|..+|.+
T Consensus       383 -----------------~d~~~~~Sg-a~~SikiWn~~t~kciRTi--------~~~y~l~~~Fvpgd~~Iv~G~k~Gel  436 (888)
T KOG0306|consen  383 -----------------SDSILLASG-AGESIKIWNRDTLKCIRTI--------TCGYILASKFVPGDRYIVLGTKNGEL  436 (888)
T ss_pred             -----------------cCceeeeec-CCCcEEEEEccCcceeEEe--------ccccEEEEEecCCCceEEEeccCCce
Confidence                             333334444 3478999997743322211        33478889999999999999999999


Q ss_pred             EEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccC-----
Q 001352          760 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT-----  833 (1093)
Q Consensus       760 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~-----  833 (1093)
                      .+||+.....                      +-+.    .+|.+.+..++.+||++.+++++ |.+|++||..-     
T Consensus       437 ~vfdlaS~~l----------------------~Eti----~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~  490 (888)
T KOG0306|consen  437 QVFDLASASL----------------------VETI----RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP  490 (888)
T ss_pred             EEEEeehhhh----------------------hhhh----hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence            9999765422                      1111    14999999999999999999998 89999999752     


Q ss_pred             ceeEEEEC-------CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEe
Q 001352          834 FKTILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG  906 (1093)
Q Consensus       834 ~~~~~~~~-------~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s  906 (1093)
                      |...+.+.       .-...|.|+.+|| |+++||++--|.+|+||-+++-+..-.+.||.-||.|+..|||+++++|||
T Consensus       491 gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS  569 (888)
T KOG0306|consen  491 GTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS  569 (888)
T ss_pred             cccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc
Confidence            22211111       2456899999999 999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEE
Q 001352          907 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQA  985 (1093)
Q Consensus       907 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~  985 (1093)
                      .|+.|+||-++-|.     +.+.+.+|..   .|.++.|-|+..++.+ |.|+.|+-||....+++.. +.+|...|+++
T Consensus       570 ADKnVKiWGLdFGD-----CHKS~fAHdD---Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~-L~~H~~ev~cL  640 (888)
T KOG0306|consen  570 ADKNVKIWGLDFGD-----CHKSFFAHDD---SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK-LDGHHSEVWCL  640 (888)
T ss_pred             CCCceEEeccccch-----hhhhhhcccC---ceeEEEEcccceeEEEecCcceEEeechhhhhhhee-eccchheeeee
Confidence            99999999999865     5666666665   7999999999888887 7999999999999999988 66899999999


Q ss_pred             EEccCCCEEEEEeCCCcEEEEEcCCCce
Q 001352          986 TFSCDCRMVFTSFVDGTLSIHEASNLEV 1013 (1093)
Q Consensus       986 ~fs~dg~~l~t~~~dg~v~vwd~~~~~~ 1013 (1093)
                      +.+|+|.+++++|.|.+|++|.-....+
T Consensus       641 av~~~G~~vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  641 AVSPNGSFVVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             EEcCCCCeEEeccCCceeEeeeccCcce
Confidence            9999999999999999999999876444

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-50  Score=397.39  Aligned_cols=333  Identities=20%  Similarity=0.324  Sum_probs=304.3

Q ss_pred             HHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352          325 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  404 (1093)
Q Consensus       325 ~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  404 (1093)
                      .+|...+.||.+.|.|++|+|+|++ ||+|+.|.++++||+.|..++++                   .++|...|.|++
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcva  164 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVA  164 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEE
Confidence            5678889999999999999999996 99999999999999999988876                   889999999999


Q ss_pred             ECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeC-----CCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352          405 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRT  479 (1093)
Q Consensus       405 ~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-----d~~~l~l~s~~~d~~i~vwd~~~~~~~  479 (1093)
                      |||||+.||+|+.||+|++||..+|+++..  .+.+|...|++++|.|     ..+  +|++++.||+|+|||+..++++
T Consensus       165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~  240 (480)
T KOG0271|consen  165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV  240 (480)
T ss_pred             ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence            999999999999999999999999987654  6889999999999965     455  7999999999999999999999


Q ss_pred             EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEc-----------cCCC-----
Q 001352          480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-----------ANGR-----  543 (1093)
Q Consensus       480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-----------~d~~-----  543 (1093)
                      ..+.+|+.+|+|++|-  ++ .++++|+.|++|++|+...+.....+.+|...|+.++.+           |.++     
T Consensus       241 ~~lsgHT~~VTCvrwG--G~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~  317 (480)
T KOG0271|consen  241 RTLSGHTASVTCVRWG--GE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF  317 (480)
T ss_pred             EEeccCccceEEEEEc--CC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence            9999999999999983  22 499999999999999999988999999999999998877           2233     


Q ss_pred             --------------------EEEEEecCCCCceeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCc
Q 001352          544 --------------------RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV  602 (1093)
Q Consensus       544 --------------------~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~  602 (1093)
                                          .|++++.    +..+.+|+... .+++....+|.   ..|+.+.|+||++++++++.|..
T Consensus       318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkS  390 (480)
T KOG0271|consen  318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKS  390 (480)
T ss_pred             HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccc
Confidence                                4888875    77799999764 45788888988   89999999999999999999999


Q ss_pred             EEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeee
Q 001352          603 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA  682 (1093)
Q Consensus       603 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  682 (1093)
                      |++||-.+|+.+.++.+|  ...|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.++        
T Consensus       391 VkLW~g~tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws--------  460 (480)
T KOG0271|consen  391 VKLWDGRTGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS--------  460 (480)
T ss_pred             eeeeeCCCcchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec--------
Confidence            999999999999999866  5679999999999999999999999999999999999999999999999886        


Q ss_pred             eccCCceEecCCCCCCCccceeecccccceecc
Q 001352          683 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEK  715 (1093)
Q Consensus       683 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~  715 (1093)
                                    |||..+++|+.|..+++|.
T Consensus       461 --------------pDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  461 --------------PDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             --------------CCCceeecCCCceEEEeec
Confidence                          8899999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.6e-50  Score=392.90  Aligned_cols=367  Identities=20%  Similarity=0.290  Sum_probs=295.2

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +.||.++|.|++|+|+|++||+|+.|.++++||+.+.....   +.++|...|.|++|+|||+  .|++|+.||+|++||
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD  185 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence            77999999999999999999999999999999999975444   8899999999999999999  899999999999999


Q ss_pred             CCCCcee-EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001352          473 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  551 (1093)
Q Consensus       473 ~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~  551 (1093)
                      .++|+++ ..+.+|...|++++|.|-                                       ...|..++|++++. 
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~---------------------------------------hl~p~~r~las~sk-  225 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPL---------------------------------------HLVPPCRRLASSSK-  225 (480)
T ss_pred             CCCCCcccccccCcccceeEEeeccc---------------------------------------ccCCCccceecccC-
Confidence            9999876 678999999999998653                                       23466677887765 


Q ss_pred             CCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEE
Q 001352          552 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  631 (1093)
Q Consensus       552 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  631 (1093)
                         |+.++|||+..+.++..+.+|.   .+|+|+.|..+ .++++|+.|++|++|+...|.+...+.+|.+  .|+.++.
T Consensus       226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal  296 (480)
T KOG0271|consen  226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL  296 (480)
T ss_pred             ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence               5568999999999999999999   99999999876 4899999999999999999999999998866  5888888


Q ss_pred             ecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccc
Q 001352          632 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  711 (1093)
Q Consensus       632 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i  711 (1093)
                      +-+- .|-+|..|.+=+-....+ +..+           .+......                                 
T Consensus       297 sTdy-~LRtgaf~~t~~~~~~~s-e~~~-----------~Al~rY~~---------------------------------  330 (480)
T KOG0271|consen  297 STDY-VLRTGAFDHTGRKPKSFS-EEQK-----------KALERYEA---------------------------------  330 (480)
T ss_pred             cchh-hhhccccccccccCCChH-HHHH-----------HHHHHHHH---------------------------------
Confidence            7542 222333222111100000 0000           00000000                                 


Q ss_pred             eecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCc
Q 001352          712 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ  791 (1093)
Q Consensus       712 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (1093)
                                                    +.-..++++++++.|.++.+|+-...+                     ++
T Consensus       331 ------------------------------~~~~~~erlVSgsDd~tlflW~p~~~k---------------------kp  359 (480)
T KOG0271|consen  331 ------------------------------VLKDSGERLVSGSDDFTLFLWNPFKSK---------------------KP  359 (480)
T ss_pred             ------------------------------hhccCcceeEEecCCceEEEecccccc---------------------cc
Confidence                                          001123446666666666666422111                     00


Q ss_pred             eeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 001352          792 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL  870 (1093)
Q Consensus       792 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~  870 (1093)
                      +.  ...  +|..-|..+.||||++++|+++ |..|++|+..+|+.+..|++|-..|..++|+. |.++|++|+.|.+++
T Consensus       360 i~--rmt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLK  434 (480)
T KOG0271|consen  360 IT--RMT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLK  434 (480)
T ss_pred             hh--hhh--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEE
Confidence            11  111  4999999999999999999999 99999999999999999999999999999999 999999999999999


Q ss_pred             EEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q 001352          871 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  915 (1093)
Q Consensus       871 iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd  915 (1093)
                      +|++++.++...+.||.+.|.++.|+|||+.+++++.|+.+++|.
T Consensus       435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999999999999999999999999995

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.2e-47  Score=404.73  Aligned_cols=585  Identities=14%  Similarity=0.151  Sum_probs=449.0

Q ss_pred             CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC
Q 001352          408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  487 (1093)
Q Consensus       408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~  487 (1093)
                      .|+++|+.. .-.|.+||+.+|+..+.+.. ......|+|+.-++|.-  .||.|..||.|+||+..++..+.++.+|..
T Consensus        33 ~Gr~va~~a-~E~vn~WdlRtge~~~~l~~-~~~k~evt~l~~~~d~l--~lAVGYaDGsVqif~~~s~~~~~tfngHK~  108 (888)
T KOG0306|consen   33 KGRAVAVSA-LEQVNIWDLRTGEIEKKLIL-LKKKAEVTCLRSSDDIL--LLAVGYADGSVQIFSLESEEILITFNGHKA  108 (888)
T ss_pred             CCcEEEEec-cccEeEEeeecchhhhhhhh-hcccceEEEeeccCCcc--eEEEEecCceEEeeccCCCceeeeeccccc
Confidence            588877633 33499999999965554322 23446899999888877  799999999999999999999999999999


Q ss_pred             CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352          488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  567 (1093)
Q Consensus       488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~  567 (1093)
                      .|+.+.|  +..|..|++||.|+.|.+||+-.......+.+|...|+.+-|..+.+++++++.    |++|++||+.+..
T Consensus       109 AVt~l~f--d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sK----Ds~iK~WdL~tqh  182 (888)
T KOG0306|consen  109 AVTTLKF--DKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSK----DSMIKFWDLETQH  182 (888)
T ss_pred             ceEEEEE--cccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEecc----CceEEEEecccce
Confidence            9999999  557789999999999999999999999999999999999999998899999886    7889999999999


Q ss_pred             eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------ceEEEEecCCCCCCCceEEEecCC
Q 001352          568 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV------------QLLTTIDAGGGLPENPRICFNKNG  635 (1093)
Q Consensus       568 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~v~~v~~s~~~  635 (1093)
                      +..+...|.   +.+..+++.+  +.+++++.|+.+++|++...            +...++...+ ......++..+++
T Consensus       183 Cf~Thvd~r---~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqs-k~R~i~l~~d~s~  256 (888)
T KOG0306|consen  183 CFETHVDHR---GEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQS-KGREINLVTDFSD  256 (888)
T ss_pred             eeeEEeccc---ceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeecc-CCceeEEeecCcc
Confidence            999988887   9999999987  78999999999999998211            1111222111 1234567777889


Q ss_pred             CEEEEEECCCeEEEEEcCCCceeee--------cccccc--c-ceeeee------cCCCceeeeeccCCceEecCCCCCC
Q 001352          636 TLLAVIANENRIKILETPESNSVDA--------AGVLSD--N-LRKLSV------NPISTVTGAGIANGSVSVNEDPKED  698 (1093)
Q Consensus       636 ~~l~~~~~dg~i~iw~~~~~~~~~~--------~~~~~~--~-i~~~~~------~~~~~~~~~~~~~~~~~~~~~~s~d  698 (1093)
                      +++++-+.|..+.++.+.+...+..        .+.+..  . -..+.-      -+... +.......++.+.+  ++.
T Consensus       257 r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~-ir~~~kiks~dv~~--~~~  333 (888)
T KOG0306|consen  257 RFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLET-IRTSAKIKSFDVTP--SGG  333 (888)
T ss_pred             cEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHh-eechhheeEEEEEe--cCC
Confidence            9999999999999999876532211        000000  0 000000      00000 00000001111111  111


Q ss_pred             C-ccceeecccccceecceeeccCc---cccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcc
Q 001352          699 V-KPEISVEAENKSEVEKPLFARPS---ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE  774 (1093)
Q Consensus       699 ~-~~l~s~~~d~~i~~w~~~~~~~~---~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~  774 (1093)
                      . +.++. -.++++..+.++.....   ....-.+...+|...|.++++|.+...+++++. +.+++|            
T Consensus       334 ~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiW------------  399 (888)
T KOG0306|consen  334 TENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIW------------  399 (888)
T ss_pred             cceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEE------------
Confidence            1 23333 55677888776652211   112222333569999999999999886555554 455555            


Q ss_pred             cccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEc
Q 001352          775 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN  853 (1093)
Q Consensus       775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s  853 (1093)
                                +..+.+|+.++.      ...+.+..|-|.++++++|. .|.+.+||+.+...+.++++|.+.|.+++.+
T Consensus       400 ----------n~~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~  463 (888)
T KOG0306|consen  400 ----------NRDTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS  463 (888)
T ss_pred             ----------EccCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeec
Confidence                      566677777754      34788999999999999998 5999999999999999999999999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCC-----cce--e------eecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001352          854 PHDNNVIAIGMDDSTILIYNARS-----SEV--I------SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  920 (1093)
Q Consensus       854 ~~d~~~lasg~~dg~i~iwd~~~-----~~~--~------~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~  920 (1093)
                      | |++.+++|+.|.+|++||..-     |..  +      ++++ -...|.|+.+||||++||.+=-|.+|+||-+++  
T Consensus       464 p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt--  539 (888)
T KOG0306|consen  464 P-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT--  539 (888)
T ss_pred             C-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecc--
Confidence            9 999999999999999999752     111  1      1122 356799999999999999999999999999998  


Q ss_pred             eeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeC
Q 001352          921 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV  999 (1093)
Q Consensus       921 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~  999 (1093)
                         ....-.+-||.-   +|.++.+|||++++++ +.|.+|+||-++=|.|-..++ +|...|.++.|.|+..+++|+|.
T Consensus       540 ---lKFflsLYGHkL---PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~P~~~~FFt~gK  612 (888)
T KOG0306|consen  540 ---LKFFLSLYGHKL---PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFLPKTHLFFTCGK  612 (888)
T ss_pred             ---eeeeeeeccccc---ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEEcccceeEEEecC
Confidence               445566777776   8999999999999999 689999999999999998855 79999999999999999999999


Q ss_pred             CCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352         1000 DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus      1000 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
                      |+.|+-||-...+.+..+.        .|...|+  |++.+| +|.++++++.|.+|++|+-.+
T Consensus       613 D~kvKqWDg~kFe~iq~L~--------~H~~ev~--cLav~~-~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  613 DGKVKQWDGEKFEEIQKLD--------GHHSEVW--CLAVSP-NGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             cceEEeechhhhhhheeec--------cchheee--eeEEcC-CCCeEEeccCCceeEeeeccC
Confidence            9999999999988887776        3566677  556667 489999999999999999765

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.5e-41  Score=356.42  Aligned_cols=623  Identities=14%  Similarity=0.151  Sum_probs=413.3

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  416 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~  416 (1093)
                      .-..++.+|-.. ++|- -....|.+||+....+-+-                   +..|..+++|+|||++|+|+|+|-
T Consensus        39 ~~~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~hl-------------------vnssRk~~t~vAfS~~GryvatGE   97 (1080)
T KOG1408|consen   39 NANGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSHL-------------------VNSSRKPLTCVAFSQNGRYVATGE   97 (1080)
T ss_pred             cCCccccccccc-ceee-ccCcEEEEEcccccchhhe-------------------ecccCcceeEEEEcCCCcEEEecc
Confidence            344666777655 3443 2236789999887654432                   566888999999999999999984


Q ss_pred             --cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC--CCcEEEEECCCCceeEEeecCCCCeEEe
Q 001352          417 --SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVYSL  492 (1093)
Q Consensus       417 --~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~vwd~~~~~~~~~~~~h~~~v~~~  492 (1093)
                        ....++||++..-..+.   ++..|...|+|++|+|.++  ++++.+.  |-.|.+||++.......- .-...|..+
T Consensus        98 cG~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav  171 (1080)
T KOG1408|consen   98 CGRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAV  171 (1080)
T ss_pred             cCCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEE
Confidence              66679999999876444   6778999999999999999  7887765  446778887654433222 134567778


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCc--------eEEEEE----ccCCCEEEEEecCCCCcee
Q 001352          493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLG--------CTRMAY----SANGRRLFSCGTSKEGESF  557 (1093)
Q Consensus       493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~--------v~~~~~----s~d~~~l~~~~~~~~~~~~  557 (1093)
                      +|  +.||.|+++.+ ...|++|.++......   .+.+...-        ...++.    ..+..+.++.      .+.
T Consensus       172 ~f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGh  242 (1080)
T KOG1408|consen  172 AF--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGH  242 (1080)
T ss_pred             EE--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccc
Confidence            88  66888888876 5689999887655211   11111100        000110    0011111111      111


Q ss_pred             EEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-----------------
Q 001352          558 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------  620 (1093)
Q Consensus       558 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------  620 (1093)
                      +.  ...+.+++..+....  .....|++.+  .++|++|..+|.|++|+..+-..+.+++..                 
T Consensus       243 Lv--EFSsRRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~  316 (1080)
T KOG1408|consen  243 LV--EFSSRRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKN  316 (1080)
T ss_pred             ee--eechhhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccc
Confidence            11  112222222221111  1334566665  579999999999999998875544433211                 


Q ss_pred             -----CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceee---ecccccccceeeeecCCCceeeeeccCCceEec
Q 001352          621 -----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD---AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN  692 (1093)
Q Consensus       621 -----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  692 (1093)
                           ...+....+.|++....|.+...|..++|||++.-..+.   .+-.|...|+.+..-|....-.     ....  
T Consensus       317 s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~-----~~ac--  389 (1080)
T KOG1408|consen  317 SESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSP-----TAAC--  389 (1080)
T ss_pred             cccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCc-----cccc--
Confidence                 112334567899999999999999999999998764433   3345666676665544211000     0000  


Q ss_pred             CCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcC
Q 001352          693 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS  772 (1093)
Q Consensus       693 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~  772 (1093)
                         -|.+- +++++.|++||+|++...........         .|    ++.+-..++  ..|+...+..         
T Consensus       390 ---lp~~c-F~TCSsD~TIRlW~l~~ctnn~vyrR---------Ni----ls~~l~ki~--y~d~~~q~~~---------  441 (1080)
T KOG1408|consen  390 ---LPRGC-FTTCSSDGTIRLWDLAFCTNNQVYRR---------NI----LSANLSKIP--YEDSTQQIMH---------  441 (1080)
T ss_pred             ---CCccc-eeEecCCCcEEEeecccccccceeec---------cc----chhhhhcCc--cccCchhhhh---------
Confidence               13333 78999999999999875322221100         00    111110011  1111110000         


Q ss_pred             cccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEE
Q 001352          773 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLA  851 (1093)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~  851 (1093)
                           ....-++|-....      .  ......++++++||+|++||+|. .|.++||++...+....+..|..+|.|+.
T Consensus       442 -----d~~~~~fdka~~s------~--~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLe  508 (1080)
T KOG1408|consen  442 -----DASAGIFDKALVS------T--CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLE  508 (1080)
T ss_pred             -----hccCCcccccchh------h--cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEe
Confidence                 0001111111100      0  12567899999999999999998 59999999999999999999999999999


Q ss_pred             EcCC--CCCEEEEEeCCCeEEEEEcCC-cceeeecccccCCeEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCceeeeee
Q 001352          852 FNPH--DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRS  926 (1093)
Q Consensus       852 ~s~~--d~~~lasg~~dg~i~iwd~~~-~~~~~~l~~h~~~V~~l~~s~dg--~~l~s~s~dg~i~iwd~~~~~~~~~~~  926 (1093)
                      ||-.  ..++||+++.|.-|.|||+.. ..+++++.+|+..|+++.|.-.|  ..++++|.|+.|.+ +........  .
T Consensus       509 yS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g--~  585 (1080)
T KOG1408|consen  509 YSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSG--R  585 (1080)
T ss_pred             ecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCc--e
Confidence            9853  357999999999999999975 35778999999999999999877  77999999997654 333211000  1


Q ss_pred             eecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecC--CCCCEEEEEEccCCCEEEEEeCCCcE
Q 001352          927 LQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTL 1003 (1093)
Q Consensus       927 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~~~fs~dg~~l~t~~~dg~v 1003 (1093)
                      +.....+......+..++..|..+++++ +.|..|+||++++|+..+.+...  |.+....+...|.|-||+|...|+++
T Consensus       586 ~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl  665 (1080)
T KOG1408|consen  586 LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTL  665 (1080)
T ss_pred             eccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCce
Confidence            1111111111135889999999999999 68999999999999999886654  45677788999999999999999999


Q ss_pred             EEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352         1004 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus      1004 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
                      .++|..+|+++++...        |+..|.  -+.|.+ |.+.|++++.||.|++|.++.
T Consensus       666 ~~~Df~sgEcvA~m~G--------HsE~VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  666 CFVDFVSGECVAQMTG--------HSEAVT--GVKFLN-DCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EEEEeccchhhhhhcC--------cchhee--eeeecc-cchhheeecCCceEEEEECch
Confidence            9999999999988873        344444  356887 579999999999999999863

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=9.5e-41  Score=352.08  Aligned_cols=509  Identities=15%  Similarity=0.187  Sum_probs=380.5

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEc--cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      +.+..|...++|++||++|+| +|+|-  ....++||++..-..+.+                   +..|+-.|+|++|+
T Consensus        72 hlvnssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFs  131 (1080)
T KOG1408|consen   72 HLVNSSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFS  131 (1080)
T ss_pred             heecccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeec
Confidence            445678889999999999996 89986  566799999998776665                   66799999999999


Q ss_pred             CCCCEEEEEEc--CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE----
Q 001352          407 PDGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY----  480 (1093)
Q Consensus       407 ~dg~~las~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~----  480 (1093)
                      |.++|+++.+.  |-.|.+||+.......    -..-...|..++|+.||.  +++|.+ ...|++|.++.++...    
T Consensus       132 p~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiP  204 (1080)
T KOG1408|consen  132 PGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIP  204 (1080)
T ss_pred             CCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCcc
Confidence            99999998865  4467889887543221    223456799999999999  789888 5679999887665210    


Q ss_pred             ---------Ee------------------------ecC-----------------CCCeEEeeecccCCccEEEEEecCC
Q 001352          481 ---------SF------------------------EGH-----------------GAPVYSLCPHAKENIHFIFSISVDG  510 (1093)
Q Consensus       481 ---------~~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~~~dg  510 (1093)
                               .+                        .||                 +...+|++.    +.++|++|+.+|
T Consensus       205 l~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g  280 (1080)
T KOG1408|consen  205 LPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKG  280 (1080)
T ss_pred             ccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccc
Confidence                     00                        000                 111223333    346899999999


Q ss_pred             eEEEEEcCCCCceEEecC--------------------C----CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352          511 KIKAWLYDSLGARVDYDA--------------------P----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  566 (1093)
Q Consensus       511 ~i~vwd~~~~~~~~~~~~--------------------~----~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~  566 (1093)
                      .|++|+..+..-..++..                    .    -....++.|++....|.+...    +..+++||++.-
T Consensus       281 ~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~  356 (1080)
T KOG1408|consen  281 MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDV  356 (1080)
T ss_pred             eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEecccc
Confidence            999998765433222110                    0    012456788888888888765    677999999876


Q ss_pred             eeeeeeecccccCCCeEEEEEcCC-----------CCEEEEEeCCCcEEEEECCCCceEEEEe-----------------
Q 001352          567 AIKRTYQGLQLQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQLLTTID-----------------  618 (1093)
Q Consensus       567 ~~~~~~~~~~~~~~~v~~v~~~~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------------  618 (1093)
                      ..+......-.|...|+.+.--|.           ...+++++.|++|++||+..+..-..+.                 
T Consensus       357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~  436 (1080)
T KOG1408|consen  357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST  436 (1080)
T ss_pred             ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCc
Confidence            544333222222355666554441           2358899999999999997632111100                 


Q ss_pred             ------------------cCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCcee
Q 001352          619 ------------------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT  680 (1093)
Q Consensus       619 ------------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  680 (1093)
                                        .-+....+.+++.+|+|++||+|..-|.+++|++.+.+....+..|...|.|+.|+-..   
T Consensus       437 ~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~---  513 (1080)
T KOG1408|consen  437 QQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV---  513 (1080)
T ss_pred             hhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch---
Confidence                              00122457899999999999999999999999999999999999999999999998211   


Q ss_pred             eeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCC--ceEEEeeccce
Q 001352          681 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG--QAIFALASNGV  758 (1093)
Q Consensus       681 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~dg~  758 (1093)
                                      -..++|++++.|..|.++|..     +.+.+.....+|...|+++.|.-+|  ..+++++.|..
T Consensus       514 ----------------~~~kLLASasrdRlIHV~Dv~-----rny~l~qtld~HSssITsvKFa~~gln~~MiscGADks  572 (1080)
T KOG1408|consen  514 ----------------LTNKLLASASRDRLIHVYDVK-----RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS  572 (1080)
T ss_pred             ----------------hhhHhhhhccCCceEEEEecc-----cccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence                            135789999999999999965     2333333445699999999999888  77899999876


Q ss_pred             eEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeE
Q 001352          759 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI  837 (1093)
Q Consensus       759 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~  837 (1093)
                      +.+-..+..                   .+|.......-.  -....++.+++.|..++++++. |..|+||++++|+..
T Consensus       573 imFr~~qk~-------------------~~g~~f~r~t~t--~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~  631 (1080)
T KOG1408|consen  573 IMFRVNQKA-------------------SSGRLFPRHTQT--LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV  631 (1080)
T ss_pred             hheehhccc-------------------cCceeccccccc--cccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence            654221110                   011111110000  1356788999999999999998 799999999999999


Q ss_pred             EEECC---CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 001352          838 LTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW  914 (1093)
Q Consensus       838 ~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iw  914 (1093)
                      +.|++   |.+....+...| .+-|||+.+.|+++.++|+.+|+++.+..||...|+.+.|++|-++|++++.||.|.||
T Consensus       632 k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW  710 (1080)
T KOG1408|consen  632 KSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW  710 (1080)
T ss_pred             eeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence            99975   557788899999 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCC
Q 001352          915 DVDG  918 (1093)
Q Consensus       915 d~~~  918 (1093)
                      .+..
T Consensus       711 ~lp~  714 (1080)
T KOG1408|consen  711 KLPL  714 (1080)
T ss_pred             ECch
Confidence            9864

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=7e-39  Score=338.90  Aligned_cols=605  Identities=13%  Similarity=0.149  Sum_probs=427.7

Q ss_pred             eeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC---EEEEEEc
Q 001352          341 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS---LLGVAYS  417 (1093)
Q Consensus       341 ~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~---~las~~~  417 (1093)
                      .+|.|.+  ++|.|. ...|.+||..+-....                   .+.||..+|+|+.|-|+.+   ++++|+.
T Consensus        20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s   77 (764)
T KOG1063|consen   20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS   77 (764)
T ss_pred             ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence            4456766  366654 4789999987653332                   2889999999999999988   8999999


Q ss_pred             CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc--eeEEeecCCCCeEE--ee
Q 001352          418 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYS--LC  493 (1093)
Q Consensus       418 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~--~~  493 (1093)
                      |+.|++|.++. +.+.....+.+|...+.|+.-.+  .  .......|+++.+||.+..+  ++..+.-..+.+..  ++
T Consensus        78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~a~~--~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~  152 (764)
T KOG1063|consen   78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCVVARS--S--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA  152 (764)
T ss_pred             CCcEEEEEEee-hheEEEEeecCcceeEEEEEeee--e--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence            99999999993 44555667778776665554322  2  22223789999999985555  33334333333333  34


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCceEEEEEccCCC---EEEEEecCCCCceeEEEEeCCCCe-
Q 001352          494 PHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGA-  567 (1093)
Q Consensus       494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~d~~---~l~~~~~~~~~~~~i~iwd~~~~~-  567 (1093)
                      +.+.++.-.++.|+.+..|.++.-...  .....+.+|...|.+++|...+.   +|++++.    |..|+||.+.-+. 
T Consensus       153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~~  228 (764)
T KOG1063|consen  153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGDD  228 (764)
T ss_pred             hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecCC
Confidence            444334445666777788888855432  44568899999999999987654   4555543    7889999765332 


Q ss_pred             --------------------ee----------eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEE
Q 001352          568 --------------------IK----------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLT  615 (1093)
Q Consensus       568 --------------------~~----------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~  615 (1093)
                                          ..          ..+.||.   +.|.++.|+|.+..|++++.|.++.+|...+.  -.+.
T Consensus       229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe---DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~  305 (764)
T KOG1063|consen  229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE---DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD  305 (764)
T ss_pred             ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc---cceEEEEEccchhhheecccCcceEEEecCCccceEEE
Confidence                                01          1123555   99999999999999999999999999987654  3333


Q ss_pred             EEecC---CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC---ceeeecccccccceeeeecCCCceeeeeccCCce
Q 001352          616 TIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV  689 (1093)
Q Consensus       616 ~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  689 (1093)
                      .....   +........-|+|+++.+++-+..|.+++|.....   .....+.+|...|+.+.+.               
T Consensus       306 ~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~---------------  370 (764)
T KOG1063|consen  306 VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD---------------  370 (764)
T ss_pred             EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec---------------
Confidence            33322   22234678899999999999999999999994433   3344567899999999997               


Q ss_pred             EecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCccc
Q 001352          690 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL  769 (1093)
Q Consensus       690 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~  769 (1093)
                             |.|.++++.+.|.+-|+|-.. +.....+.+..| +.|...++++++-+....+++++....+|+|+.+..-.
T Consensus       371 -------psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRP-QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv  441 (764)
T KOG1063|consen  371 -------PSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARP-QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV  441 (764)
T ss_pred             -------CCCCEEEEeccccceeeeccc-ccccceeeeccc-ccccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence                   678899999999999998754 222223444434 35889999999999666688999999999999875432


Q ss_pred             ----------------CcCccccc----ccCCccc--CCCCCCc------------------------eeeccC-----C
Q 001352          770 ----------------TLSTEATT----KVPPRLY--QPRHGPQ------------------------FMVNDT-----T  798 (1093)
Q Consensus       770 ----------------~~~~~~~~----~~~~~~~--~~~~~~~------------------------~~~~~~-----~  798 (1093)
                                      .+.+....    +.+. ++  +..+|..                        +....+     +
T Consensus       442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa-~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~K  520 (764)
T KOG1063|consen  442 KSLMAICGKCFKGSDELPDGANVPALGLSNKA-FFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHK  520 (764)
T ss_pred             HHHHHHhCccccCchhcccccccccccccCCC-CcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHH
Confidence                            00000000    0000 01  1122211                        111110     1


Q ss_pred             CCCCCCCeeEEEEccCCCEEEEEeC------CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001352          799 DSNSQEAVPCFALSKNDAYLFSASG------GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY  872 (1093)
Q Consensus       799 ~~~~~~~v~~l~~s~dg~~la~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iw  872 (1093)
                      ..||...|.+++.+|+|+++|++..      ..|++|+..++..++.+..|.-.|+.++||| |+++|++.+.|.++.+|
T Consensus       521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~  599 (764)
T KOG1063|consen  521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLY  599 (764)
T ss_pred             hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEee
Confidence            2479999999999999999999962      3499999999999999999999999999999 99999999999999999


Q ss_pred             EcCCcce----eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccC
Q 001352          873 NARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  948 (1093)
Q Consensus       873 d~~~~~~----~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d  948 (1093)
                      .......    ....+.|+..|+++.|+||++++||+|.|++|++|......-.   .+... .....+..|+++++.|-
T Consensus       600 ~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~---~i~~~-a~~~~~~aVTAv~~~~~  675 (764)
T KOG1063|consen  600 EVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDK---YISRF-ACLKFSLAVTAVAYLPV  675 (764)
T ss_pred             eeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhh---hhhhh-chhccCCceeeEEeecc
Confidence            9865321    2346789999999999999999999999999999999875211   11110 11122246889988773


Q ss_pred             C-----CEEEEE-eCCeEEEEEcC-------Ccce----eeeeecCCCCCEEEEEEccC----------CCEEEEEeCCC
Q 001352          949 Q-----TRFLLV-HETHLAIYEAE-------ELTC----LKQWFPISSVPISQATFSCD----------CRMVFTSFVDG 1001 (1093)
Q Consensus       949 g-----~~l~~~-~d~~i~vwd~~-------~~~~----~~~~~~~h~~~v~~~~fs~d----------g~~l~t~~~dg 1001 (1093)
                      .     ..+++| ..|.|.+|...       .+..    ...-..+|...|..+.|+|-          ...|++|+.|.
T Consensus       676 ~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~  755 (764)
T KOG1063|consen  676 DHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDE  755 (764)
T ss_pred             ccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccc
Confidence            2     245556 67899999854       1110    01112346889999999974          23579999999


Q ss_pred             cEEEEEcC
Q 001352         1002 TLSIHEAS 1009 (1093)
Q Consensus      1002 ~v~vwd~~ 1009 (1093)
                      +++++++.
T Consensus       756 ~vri~nv~  763 (764)
T KOG1063|consen  756 SVRIFNVD  763 (764)
T ss_pred             eeEEeecc
Confidence            99999874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.6e-40  Score=333.42  Aligned_cols=345  Identities=19%  Similarity=0.266  Sum_probs=287.8

Q ss_pred             chHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCC--CceeEEeeeeeeecccccceeeeeeecCCCCCe
Q 001352          323 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  400 (1093)
Q Consensus       323 ~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  400 (1093)
                      .|+...+.++ |+.+|.+++|+|-..-++|+|+.|-+.++|++..  +.......+     ..|...--  .-...+..|
T Consensus       167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l-----rh~~~~~~--~s~~~nkdV  238 (524)
T KOG0273|consen  167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL-----RHCIREGG--KSVPSNKDV  238 (524)
T ss_pred             ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh-----hhhhhhhc--ccCCccCCc
Confidence            3444445566 9999999999998765799999999999999874  111110000     00000000  001134689


Q ss_pred             EEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE
Q 001352          401 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  480 (1093)
Q Consensus       401 ~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  480 (1093)
                      ++++|+.+|..||+|+.||.++||+...+. +.   ++..|.++|.++.|+.+|.  ++++++.|+++.+||..+|...+
T Consensus       239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q  312 (524)
T KOG0273|consen  239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ  312 (524)
T ss_pred             ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence            999999999999999999999999988743 33   6788999999999999999  89999999999999999999999


Q ss_pred             EeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352          481 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  560 (1093)
Q Consensus       481 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i  560 (1093)
                      .+.-|..+-..+.|-.   ...+++.+.||.|+|+.+...++..++.+|.++|.++.|.|.|.+|++++.    |++++|
T Consensus       313 ~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki  385 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI  385 (524)
T ss_pred             eeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence            9999998866677642   247999999999999999999999999999999999999999999999986    778999


Q ss_pred             EeCCCCeeeeeeecccccCCCeEEEEEcCCC---------CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEE
Q 001352          561 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  631 (1093)
Q Consensus       561 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  631 (1093)
                      |+.........++.|.   ..|..+.|+|.|         ..+++++.|++|++||+..+.++..+..|  ..+|++++|
T Consensus       386 Ws~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvaf  460 (524)
T KOG0273|consen  386 WSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAF  460 (524)
T ss_pred             eecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEe
Confidence            9999999999999988   899999999975         36888999999999999999999998755  457999999


Q ss_pred             ecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccc
Q 001352          632 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  711 (1093)
Q Consensus       632 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i  711 (1093)
                      +|+|+++|+|+.||.|.+|+.++++.++...                                                 
T Consensus       461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-------------------------------------------------  491 (524)
T KOG0273|consen  461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-------------------------------------------------  491 (524)
T ss_pred             cCCCcEEEecCCCCeeEeccccchheeEeec-------------------------------------------------
Confidence            9999999999999999999999887766554                                                 


Q ss_pred             eecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeee
Q 001352          712 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  764 (1093)
Q Consensus       712 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~  764 (1093)
                                            ..+.|..+.|+.+|..+.++..||.+++-|+
T Consensus       492 ----------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  492 ----------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             ----------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence                                  2344777889999998999999998888765

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.7e-41  Score=337.22  Aligned_cols=283  Identities=19%  Similarity=0.247  Sum_probs=266.2

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC--CC
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--GS  410 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d--g~  410 (1093)
                      |.+.+|..+.||+|++ +||||+-+|.++||+..++..+..                   +.||...|.++.|+|.  +.
T Consensus       173 gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~~  232 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSDL  232 (459)
T ss_pred             cCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCcc
Confidence            6788999999999999 699999999999999999977765                   8899999999999996  67


Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  490 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~  490 (1093)
                      .+|+|+.||++++|++.+...+.   .+.+|..+|..++|+|+|+  +|+|++.|.+-++||+.++..+....||...|.
T Consensus       233 ~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~  307 (459)
T KOG0272|consen  233 NLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGVF  307 (459)
T ss_pred             ceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccccc
Confidence            99999999999999999876665   6889999999999999999  899999999999999999999999999999999


Q ss_pred             EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352          491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  570 (1093)
Q Consensus       491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~  570 (1093)
                      +++|.+  ||.++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+.    |++++|||++....+.
T Consensus       308 ~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly  381 (459)
T KOG0272|consen  308 SIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELY  381 (459)
T ss_pred             eeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccce
Confidence            999954  7789999999999999999999999999999999999999999999999986    7789999999999999


Q ss_pred             eeecccccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001352          571 TYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  649 (1093)
Q Consensus       571 ~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  649 (1093)
                      ++.+|.   +-|..|.|+| .|.+|++++.|++++||...+..+++.+.+|..  .|.++.+++|+..+++++.|.++++
T Consensus       382 ~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KL  456 (459)
T KOG0272|consen  382 TIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKL  456 (459)
T ss_pred             eccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeee
Confidence            999998   9999999999 678899999999999999999999999998755  5999999999999999999999999


Q ss_pred             EE
Q 001352          650 LE  651 (1093)
Q Consensus       650 w~  651 (1093)
                      |.
T Consensus       457 W~  458 (459)
T KOG0272|consen  457 WR  458 (459)
T ss_pred             cc
Confidence            95

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=2.6e-37  Score=333.79  Aligned_cols=581  Identities=15%  Similarity=0.160  Sum_probs=435.1

Q ss_pred             eeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCE
Q 001352          341 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  420 (1093)
Q Consensus       341 ~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~  420 (1093)
                      ..+..-|..++++.+.+.+..+||++.-..+..                   -..+...|+|++-..+  +..+++.. .
T Consensus        39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g~-~   96 (910)
T KOG1539|consen   39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASGN-K   96 (910)
T ss_pred             eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecCc-E
Confidence            666666667888889999999999998877764                   2347788999886544  44444433 3


Q ss_pred             EEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-cee----EEeecCCCCeEEeeec
Q 001352          421 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRT----YSFEGHGAPVYSLCPH  495 (1093)
Q Consensus       421 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~----~~~~~h~~~v~~~~~~  495 (1093)
                      |.+|..  |+.++.  .+.+|...|.-+.-  -|.  .++++..++.+.||+..++ ..+    .-++.....|+++. +
T Consensus        97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H  167 (910)
T KOG1539|consen   97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H  167 (910)
T ss_pred             EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence            666654  333332  45678777776654  355  6888999999999998874 221    11222333377764 4


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecc
Q 001352          496 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  575 (1093)
Q Consensus       496 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  575 (1093)
                      |+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|..    +|.|.+++++.++.+..|+..
T Consensus       168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d  243 (910)
T KOG1539|consen  168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD  243 (910)
T ss_pred             chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence            4444457999999999999999999999999999999999999999889999876    777999999999999999876


Q ss_pred             cccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352          576 QLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  654 (1093)
Q Consensus       576 ~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  654 (1093)
                      .   +.|++++|..||+.+++ |+..|.+.+||++..+.+..+... +...+....|-|....+++++.|+.+++|-.++
T Consensus       244 ~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~na-h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~  319 (910)
T KOG1539|consen  244 W---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA-HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS  319 (910)
T ss_pred             c---cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecc-ccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence            5   89999999999987655 667799999999998888776532 234688899999999999999999999887664


Q ss_pred             C----ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccC
Q 001352          655 S----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP  730 (1093)
Q Consensus       655 ~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~  730 (1093)
                      +    +.++...||..+..++.|.                     ...|..+.+++.|++.+.+++......+....   
T Consensus       320 ~dg~pR~LR~R~GHs~Pp~~irfy---------------------~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~---  375 (910)
T KOG1539|consen  320 GDGVPRLLRSRGGHSAPPSCIRFY---------------------GSQGHFILSAKQDRTLRSFSVISESQSQELGQ---  375 (910)
T ss_pred             CCCcchheeeccCCCCCchheeee---------------------ccCcEEEEecccCcchhhhhhhHHHHhHhhcc---
Confidence            3    5667778999999888887                     46788899999999998888542211111000   


Q ss_pred             ccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEE
Q 001352          731 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA  810 (1093)
Q Consensus       731 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  810 (1093)
                                ......++         .+.                      +...      ..  +    .-.+|..++
T Consensus       376 ----------~~~~~~~k---------k~~----------------------~~~~------~~--~----k~p~i~~fa  402 (910)
T KOG1539|consen  376 ----------LHNKKRAK---------KVN----------------------VFST------EK--L----KLPPIVEFA  402 (910)
T ss_pred             ----------cccccccc---------ccc----------------------ccch------hh--h----cCCcceeee
Confidence                      00000000         000                      0000      00  0    122333444


Q ss_pred             EccC-----CCEEEEE-eCCeEEEEEccCcee-EEEEC-----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352          811 LSKN-----DAYLFSA-SGGVISLYIVMTFKT-ILTIM-----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  878 (1093)
Q Consensus       811 ~s~d-----g~~la~~-~dg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~  878 (1093)
                      +...     ...++.. ++...+.|++..... ...+.     .....+++++.++ .|++.+.|+..|.|.+|++++|-
T Consensus       403 ~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi  481 (910)
T KOG1539|consen  403 FENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGI  481 (910)
T ss_pred             cccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCe
Confidence            3321     1223322 246788999876554 22232     2346899999999 99999999999999999999999


Q ss_pred             eeeec---ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-
Q 001352          879 VISKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-  954 (1093)
Q Consensus       879 ~~~~l---~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-  954 (1093)
                      ....+   ..|.++|++++...-++.+++++.+|.+++||+.......     ...    .+..+..+..+.....+++ 
T Consensus       482 ~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~-----~l~----l~~~~~~iv~hr~s~l~a~~  552 (910)
T KOG1539|consen  482 HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK-----SLR----LGSSITGIVYHRVSDLLAIA  552 (910)
T ss_pred             eecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee-----eec----cCCCcceeeeeehhhhhhhh
Confidence            88888   5799999999998888999999999999999999854222     211    1125778888888888888 


Q ss_pred             EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccce
Q 001352          955 VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1034 (1093)
Q Consensus       955 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1034 (1093)
                      ..|-.|.++|+.+.+.++. +.||+.+|++++|||||++|++++.|++|++||+.++.++..+...           ..+
T Consensus       553 ~ddf~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----------~~~  620 (910)
T KOG1539|consen  553 LDDFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----------SPC  620 (910)
T ss_pred             cCceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----------Ccc
Confidence            4667899999999988887 6689999999999999999999999999999999999999777611           234


Q ss_pred             eEEEeCCCCCCEEEEEeCC-CcEEEEe
Q 001352         1035 HAIAAHPLKPTQFAVGLTN-GEVYVIE 1060 (1093)
Q Consensus      1035 ~~~~~~p~d~~~l~~~~~d-g~v~~w~ 1060 (1093)
                      .+++|+| .|++|||+..| ..|++|-
T Consensus       621 ~sls~SP-ngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  621 TSLSFSP-NGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             eeeEECC-CCCEEEEEEecCceEEEEE
Confidence            6789999 59999999999 6899996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-39  Score=306.25  Aligned_cols=297  Identities=20%  Similarity=0.286  Sum_probs=254.0

Q ss_pred             HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      .-+|++|+++|+.++..+.+..++.+++.|.++.+|++.......-            .+  ...+.||+..|..++.++
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G------------~~--~r~~~GHsH~v~dv~~s~   73 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG------------VP--VRRLTGHSHFVSDVVLSS   73 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC------------ce--eeeeeccceEecceEEcc
Confidence            3578999999999999999888899999999999999876422211            11  112889999999999999


Q ss_pred             CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecC--
Q 001352          408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH--  485 (1093)
Q Consensus       408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h--  485 (1093)
                      ||.+.++++.|+++++||+.+|+..+   .|.||...|.+++|++|++  .++||+.|++|++||+. |.+..++..+  
T Consensus        74 dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~~  147 (315)
T KOG0279|consen   74 DGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDSH  147 (315)
T ss_pred             CCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCCC
Confidence            99999999999999999999996554   6789999999999999999  69999999999999955 4555555443  


Q ss_pred             CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352          486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  565 (1093)
Q Consensus       486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~  565 (1093)
                      .+.|.+++|+|.++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+.    ++.+.+||++.
T Consensus       148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~  223 (315)
T KOG0279|consen  148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLNE  223 (315)
T ss_pred             cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEccC
Confidence            78999999999988899999999999999999999999999999999999999999999999876    67799999999


Q ss_pred             CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC-------CCCCceEEEecCCCEE
Q 001352          566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGTLL  638 (1093)
Q Consensus       566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~l  638 (1093)
                      ++.+..+...    ..|.+++|+|+. +.+++..+..|+|||++++..+..+.....       .+...+++|++||..|
T Consensus       224 ~k~lysl~a~----~~v~sl~fspnr-ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL  298 (315)
T KOG0279|consen  224 GKNLYSLEAF----DIVNSLCFSPNR-YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTL  298 (315)
T ss_pred             CceeEeccCC----CeEeeEEecCCc-eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence            9998777653    589999999985 445555556699999999998877754321       2335678999999999


Q ss_pred             EEEECCCeEEEEEcC
Q 001352          639 AVIANENRIKILETP  653 (1093)
Q Consensus       639 ~~~~~dg~i~iw~~~  653 (1093)
                      +.|..|+.|++|.+.
T Consensus       299 f~g~td~~irv~qv~  313 (315)
T KOG0279|consen  299 FAGYTDNVIRVWQVA  313 (315)
T ss_pred             EeeecCCcEEEEEee
Confidence            999999999999864

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.7e-39  Score=305.81  Aligned_cols=292  Identities=17%  Similarity=0.256  Sum_probs=267.1

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      ++|+||.+.|.++.|++|.++ +++++.||.++|||.-|...++.                   ++-....|..+||+|.
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sPS  108 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSPS  108 (343)
T ss_pred             EEecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECCC
Confidence            789999999999999999996 89999999999999999887765                   3336789999999999


Q ss_pred             CCEEEEEEcCCEEEEEEccCC--C-cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGG--S-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  485 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~--~-~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h  485 (1093)
                      |+++|+|+-|+...||++.+.  + .++...++.+|++.+.|+.|.+|+.   |+|++.|.++.+||+++|+.+..|.+|
T Consensus       109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH  185 (343)
T KOG0286|consen  109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGH  185 (343)
T ss_pred             CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCC
Confidence            999999999999999999865  2 2344456889999999999999886   999999999999999999999999999


Q ss_pred             CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352          486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  565 (1093)
Q Consensus       486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~  565 (1093)
                      .+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|++++|.|+|.-+++|+.    ++..++||++.
T Consensus       186 ~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlRa  260 (343)
T KOG0286|consen  186 TGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLRA  260 (343)
T ss_pred             cccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeecC
Confidence            999999999875 7789999999999999999999999999999999999999999999999986    77899999999


Q ss_pred             CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352          566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  645 (1093)
Q Consensus       566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  645 (1093)
                      .+.+..|.... ...+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|.+  .|.++..+|||.-+++|+.|.
T Consensus       261 D~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWDs  337 (343)
T KOG0286|consen  261 DQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWDS  337 (343)
T ss_pred             CcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchhH
Confidence            99998887433 446899999999999999999999999999999999999987755  699999999999999999999


Q ss_pred             eEEEEE
Q 001352          646 RIKILE  651 (1093)
Q Consensus       646 ~i~iw~  651 (1093)
                      .++||.
T Consensus       338 ~lriW~  343 (343)
T KOG0286|consen  338 TLRIWA  343 (343)
T ss_pred             heeecC
Confidence            999994

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-37  Score=325.21  Aligned_cols=481  Identities=17%  Similarity=0.268  Sum_probs=360.8

Q ss_pred             HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      ..+++..|++.|.++.|+|.... +.++-.+|.|.|||.++...++.+.                   -...+|.+..|-
T Consensus         5 ~krk~~~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVksfe-------------------V~~~PvRa~kfi   64 (794)
T KOG0276|consen    5 FKRKFQSRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKSFE-------------------VSEVPVRAAKFI   64 (794)
T ss_pred             hhhHhhccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeeeee-------------------ecccchhhheee
Confidence            34567779999999999999995 6666789999999999998887633                   256789999999


Q ss_pred             CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-ceeEEeecC
Q 001352          407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGH  485 (1093)
Q Consensus       407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~h  485 (1093)
                      +-..++++|++|..|+||+.++++.+.   .+..|.+.|.+++.+|...  +++|+|.|-+|++||.+.+ .+.++|.||
T Consensus        65 aRknWiv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH  139 (794)
T KOG0276|consen   65 ARKNWIVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGH  139 (794)
T ss_pred             eccceEEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCc
Confidence            999999999999999999999997665   7889999999999999988  8999999999999999876 788999999


Q ss_pred             CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC--CEEEEEecCCCCceeEEEEeC
Q 001352          486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNE  563 (1093)
Q Consensus       486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~~~~~~~~~i~iwd~  563 (1093)
                      ...|.+++|+|. |...+++++-|++|++|.+....+..++.+|...|+++.|-+-|  .+|++++.    |..+.+||.
T Consensus       140 ~HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDy  214 (794)
T KOG0276|consen  140 EHYVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDY  214 (794)
T ss_pred             ceEEEEEEecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeec
Confidence            999999999987 45799999999999999999999999999999999999998754  58999875    788999999


Q ss_pred             CCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC
Q 001352          564 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  643 (1093)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  643 (1093)
                      ++..+++++.||.   ..|..+.|+|.-..+++|++||+++||+..+-++..++...  ...+.+++-.+.++.+++|.+
T Consensus       215 Qtk~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~D  289 (794)
T KOG0276|consen  215 QTKSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFD  289 (794)
T ss_pred             chHHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEecc
Confidence            9999999999999   89999999999999999999999999999998888887755  346899999998889999998


Q ss_pred             CCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcc
Q 001352          644 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE  723 (1093)
Q Consensus       644 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~  723 (1093)
                      .|.+.+ .+....+...+                                  .+.|+.+           |...      
T Consensus       290 eg~i~v-~lgreeP~vsM----------------------------------d~~gKIi-----------wa~~------  317 (794)
T KOG0276|consen  290 EGSVTV-KLGREEPAVSM----------------------------------DSNGKII-----------WAVH------  317 (794)
T ss_pred             CCcEEE-EccCCCCceee----------------------------------cCCccEE-----------EEcC------
Confidence            887755 22222111111                                  1112211           2110      


Q ss_pred             ccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCce--eeccCCCCC
Q 001352          724 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF--MVNDTTDSN  801 (1093)
Q Consensus       724 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  801 (1093)
                                  +.|..+..-+       .+..+                           ++..|+++  ...++..  
T Consensus       318 ------------~ei~~~~~ks-------~~~~~---------------------------ev~DgErL~LsvKeLgs--  349 (794)
T KOG0276|consen  318 ------------SEIQAVNLKS-------VGAQK---------------------------EVTDGERLPLSVKELGS--  349 (794)
T ss_pred             ------------ceeeeeecee-------ccCcc---------------------------cccCCccccchhhhccc--
Confidence                        1111111100       00000                           11111111  0011100  


Q ss_pred             CCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceee
Q 001352          802 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  881 (1093)
Q Consensus       802 ~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~  881 (1093)
                      -.-....++-+|+|+++++++||.-.||..-..+.     ...+.-....|++ |....|+-..++.|+++  ++.+...
T Consensus       350 ~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~k  421 (794)
T KOG0276|consen  350 VEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHK  421 (794)
T ss_pred             cccchHHhccCCCCcEEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCceEEE--ecceecc
Confidence            11122357889999999999999999987543322     2445667889999 76777778778899998  6666665


Q ss_pred             ecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEE
Q 001352          882 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLA  961 (1093)
Q Consensus       882 ~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~  961 (1093)
                      .+...-.   +-.+ -.|.+|...+ ++.+++||.++++...     ..+-      ....+.|+.+|.+++.+.|...+
T Consensus       422 si~~~~~---~e~i-~gg~Llg~~s-s~~~~fydW~~~~lVr-----rI~v------~~k~v~w~d~g~lVai~~d~Sfy  485 (794)
T KOG0276|consen  422 SIRPDMS---AEGI-FGGPLLGVRS-SDFLCFYDWESGELVR-----RIEV------TSKHVYWSDNGELVAIAGDDSFY  485 (794)
T ss_pred             ccccccc---eeee-cCCceEEEEe-CCeEEEEEcccceEEE-----EEee------ccceeEEecCCCEEEEEecCcee
Confidence            5542111   1111 2345555555 5559999999866433     2222      23478999999999998888766


Q ss_pred             EEEcC
Q 001352          962 IYEAE  966 (1093)
Q Consensus       962 vwd~~  966 (1093)
                      ++...
T Consensus       486 il~~n  490 (794)
T KOG0276|consen  486 ILKFN  490 (794)
T ss_pred             EEEec
Confidence            66543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3e-40  Score=329.71  Aligned_cols=285  Identities=17%  Similarity=0.258  Sum_probs=266.1

Q ss_pred             CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC
Q 001352          395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  474 (1093)
Q Consensus       395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  474 (1093)
                      |.+.+|..+.||+|++.||+|+.+|.++||+..+...+.   ++.||...|.++.|+|....+.++||+.||++++|++.
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            467899999999999999999999999999999875444   78999999999999998422279999999999999999


Q ss_pred             CCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001352          475 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  554 (1093)
Q Consensus       475 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~  554 (1093)
                      +..++..+.+|...|..++|+|  +|++|++++.|.+-++||+.++.......+|...|.+++|.|||..+++|+.    
T Consensus       250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl----  323 (459)
T KOG0272|consen  250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL----  323 (459)
T ss_pred             CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence            9999999999999999999966  6689999999999999999999999999999999999999999999999987    


Q ss_pred             ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec-
Q 001352          555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-  633 (1093)
Q Consensus       555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-  633 (1093)
                      |..-++||+++|.++..+.+|.   .+|.+|.|+|+|..+++||.|++++|||++..+.+.+++.|..  .|..|.|+| 
T Consensus       324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~  398 (459)
T KOG0272|consen  324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ  398 (459)
T ss_pred             cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence            6678999999999999999988   9999999999999999999999999999999999999987754  599999998 


Q ss_pred             CCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccccee
Q 001352          634 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  713 (1093)
Q Consensus       634 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  713 (1093)
                      .|.+|++++.|++++||...+..+++.+.||.+.|.++.++                      +|+..+++++.|+++++
T Consensus       399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis----------------------~d~~~i~t~s~DRT~KL  456 (459)
T KOG0272|consen  399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS----------------------PDSQAIATSSFDRTIKL  456 (459)
T ss_pred             CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec----------------------cCCceEEEeccCceeee
Confidence            78999999999999999999999999999999999999886                      78899999999999999


Q ss_pred             cc
Q 001352          714 EK  715 (1093)
Q Consensus       714 w~  715 (1093)
                      |.
T Consensus       457 W~  458 (459)
T KOG0272|consen  457 WR  458 (459)
T ss_pred             cc
Confidence            96

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-35  Score=320.15  Aligned_cols=546  Identities=13%  Similarity=0.162  Sum_probs=403.3

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  412 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l  412 (1093)
                      .+.+.|+|++=+.+-- ++|.|   ..|.+|.  .|+.+..                  +..+|...|.-+.  |=|.++
T Consensus        74 ~lp~~I~alas~~~~v-y~A~g---~~i~~~~--rgk~i~~------------------~~~~~~a~v~~l~--~fGe~l  127 (910)
T KOG1539|consen   74 PLPDKITALASDKDYV-YVASG---NKIYAYA--RGKHIRH------------------TTLLHGAKVHLLL--PFGEHL  127 (910)
T ss_pred             CCCCceEEEEecCceE-EEecC---cEEEEEE--ccceEEE------------------EeccccceEEEEe--eecceE
Confidence            4667899998777654 24433   4566665  3433321                  1456777776654  458899


Q ss_pred             EEEEcCCEEEEEEccCC-CcccceEEe-ccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352          413 GVAYSKHIVQLYAYHGG-SDARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  490 (1093)
Q Consensus       413 as~~~d~~i~iwd~~~~-~~~~~~~~~-~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~  490 (1093)
                      +++..++.+.||+..++ +.......+ ....+.|+++ ++|..--..++.|+.+|.+++|++.+++.+++++++...|+
T Consensus       128 ia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT  206 (910)
T KOG1539|consen  128 IAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRIT  206 (910)
T ss_pred             EEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEeccccccee
Confidence            99999999999999884 221111122 2222237766 45553222588999999999999999999999999999999


Q ss_pred             EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352          491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  570 (1093)
Q Consensus       491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~  570 (1093)
                      ++.-+|--  ..++.|..+|+|.+++++..+.+..+....++|++++|..||..+.+.+.   ..|.+.+||++..+.+.
T Consensus       207 ~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~  281 (910)
T KOG1539|consen  207 AIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLIN  281 (910)
T ss_pred             EeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeee
Confidence            99775544  58999999999999999999999999988899999999999998777654   25669999999988887


Q ss_pred             eee-cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----eEEEEecCCCCCCCceEEEe-cCCCEEEEEECC
Q 001352          571 TYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFN-KNGTLLAVIANE  644 (1093)
Q Consensus       571 ~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~d  644 (1093)
                      ... .|.   +.+....|.|....+++++.|+.+++|=.+++.    .++...  +|..+..++.|. .+|..+.+++.|
T Consensus       282 v~~nah~---~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~irfy~~~g~~ilsa~~D  356 (910)
T KOG1539|consen  282 VTRNAHY---GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSCIRFYGSQGHFILSAKQD  356 (910)
T ss_pred             eeecccc---CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchheeeeccCcEEEEecccC
Confidence            776 444   789999999999999999999999988555433    233333  445567889887 689999999999


Q ss_pred             CeEEEEEcCCCceeeeccc------------------ccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeec
Q 001352          645 NRIKILETPESNSVDAAGV------------------LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  706 (1093)
Q Consensus       645 g~i~iw~~~~~~~~~~~~~------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  706 (1093)
                      ++++.+++.....-+.+..                  .-.+|..+++.-..                 .....+.+...-
T Consensus       357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R-----------------E~~W~Nv~~~h~  419 (910)
T KOG1539|consen  357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR-----------------EKEWDNVITAHK  419 (910)
T ss_pred             cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch-----------------hhhhcceeEEec
Confidence            9999988764321111110                  01112222221000                 012334444555


Q ss_pred             ccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCC
Q 001352          707 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP  786 (1093)
Q Consensus       707 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~  786 (1093)
                      .+...+.|+......++...-.-+.......+.+++.++-|++.+.|.+.|.|.+|+++.+-.                 
T Consensus       420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~-----------------  482 (910)
T KOG1539|consen  420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH-----------------  482 (910)
T ss_pred             CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee-----------------
Confidence            566788899876555433322222222456789999999999999999999999988765421                 


Q ss_pred             CCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeC
Q 001352          787 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD  865 (1093)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~  865 (1093)
                           ...+- ....|..+|+.++...-++.+++++ +|.+.+||..+...+..+. -...++++.++. ...++|++..
T Consensus       483 -----r~sf~-~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~d  554 (910)
T KOG1539|consen  483 -----RKSFG-DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIALD  554 (910)
T ss_pred             -----ecccc-cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhhcC
Confidence                 11110 1124999999999998888888887 7999999999888777776 456788888888 7789999999


Q ss_pred             CCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEE
Q 001352          866 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF  945 (1093)
Q Consensus       866 dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  945 (1093)
                      |-.|+++|..+.+.++.|.||.+.|++++|||||++|++++.|++|++||+.++.......+.         .+.+++.|
T Consensus       555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sls~  625 (910)
T KOG1539|consen  555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSLSF  625 (910)
T ss_pred             ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------CcceeeEE
Confidence            999999999999999999999999999999999999999999999999999997654432222         25789999


Q ss_pred             ccCCCEEEEE-eC-CeEEEEEcC
Q 001352          946 HKDQTRFLLV-HE-THLAIYEAE  966 (1093)
Q Consensus       946 s~dg~~l~~~-~d-~~i~vwd~~  966 (1093)
                      ||+|.+||+. .| ..|++|.-.
T Consensus       626 SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  626 SPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             CCCCCEEEEEEecCceEEEEEch
Confidence            9999999995 33 579999743

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.3e-37  Score=293.27  Aligned_cols=287  Identities=15%  Similarity=0.179  Sum_probs=265.4

Q ss_pred             eecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEE
Q 001352          392 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  471 (1093)
Q Consensus       392 ~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  471 (1093)
                      +++||.+.|.++.|++|+++|++++.||.+.|||.-+.....   .++-....|..++|+|.|+  +++.|+.|+...||
T Consensus        50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY  124 (343)
T ss_pred             EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence            388999999999999999999999999999999998865443   4556778999999999999  89999999999999


Q ss_pred             ECCCC------ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCCE
Q 001352          472 DAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR  544 (1093)
Q Consensus       472 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~  544 (1093)
                      ++.+.      +..+.+.+|.+.+.++.|..  | ..|++++.|.+..+||++++.....+.+|.+.|.++.++| +++.
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence            99865      44567899999999999854  3 5899999999999999999999999999999999999999 9999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCC
Q 001352          545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  624 (1093)
Q Consensus       545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  624 (1093)
                      +++|+-    +...++||++.+.+++.|.+|.   ..|+++.|.|+|.-+++|++|++.++||++..+.+..+.......
T Consensus       202 FvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~  274 (343)
T KOG0286|consen  202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC  274 (343)
T ss_pred             EEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence            999986    6679999999999999999999   999999999999999999999999999999999999998877778


Q ss_pred             CCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCcccee
Q 001352          625 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  704 (1093)
Q Consensus       625 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  704 (1093)
                      +|++++||..|++|++|..|..+.+||.-.++.+..+.+|.+.|.++..+                      |||--+++
T Consensus       275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----------------------~DG~av~T  332 (343)
T KOG0286|consen  275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----------------------PDGMAVAT  332 (343)
T ss_pred             CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----------------------CCCcEEEe
Confidence            89999999999999999999999999999999999999999999999997                      77888899


Q ss_pred             ecccccceecc
Q 001352          705 VEAENKSEVEK  715 (1093)
Q Consensus       705 ~~~d~~i~~w~  715 (1093)
                      |+.|.++|+|.
T Consensus       333 gSWDs~lriW~  343 (343)
T KOG0286|consen  333 GSWDSTLRIWA  343 (343)
T ss_pred             cchhHheeecC
Confidence            99999999994

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=1.4e-35  Score=314.05  Aligned_cols=591  Identities=14%  Similarity=0.172  Sum_probs=402.6

Q ss_pred             EEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCC-cEEEEEEcCCCcEEEEECCCC--cee
Q 001352          403 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTG--SRT  479 (1093)
Q Consensus       403 v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~l~s~~~d~~i~vwd~~~~--~~~  479 (1093)
                      .+|.| +..+|.| ....|.+||....   .....+.||..+|+|+.|.|+.+ ...+++|+.|+.|++|.++..  .++
T Consensus        20 ~sw~~-~~~vafG-a~~~Iav~dp~k~---~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i   94 (764)
T KOG1063|consen   20 SSWGP-GGLVAFG-AGPAIAVADPEKI---LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI   94 (764)
T ss_pred             ccccc-cceEEec-CCceEEEeCcccc---eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE
Confidence            34544 3355555 4557999998775   23347889999999999998875 115899999999999998843  456


Q ss_pred             EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCC--ceEEEEEcc-CCCEEEEEecCCCC
Q 001352          480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGL--GCTRMAYSA-NGRRLFSCGTSKEG  554 (1093)
Q Consensus       480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~--~v~~~~~s~-d~~~l~~~~~~~~~  554 (1093)
                      .++.+|...+.++.-.+    ....+.+.|+.+.+||.+..+.  ...+.....  -..|+++.+ .+.++.+++.+   
T Consensus        95 ~~~~g~~~~~~cv~a~~----~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs---  167 (764)
T KOG1063|consen   95 YTIQGHCKECVCVVARS----SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGS---  167 (764)
T ss_pred             EeecCcceeEEEEEeee----eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCc---
Confidence            77788777776664211    1223337999999999855441  111111111  234566666 45555555432   


Q ss_pred             ceeEEEEeCCCC--eeeeeeecccccCCCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCCc-----------------
Q 001352          555 ESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKD---QILAAGDDHVIKIWDMNKVQ-----------------  612 (1093)
Q Consensus       555 ~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~v~~~~~~~---~l~~~~~dg~i~iwd~~~~~-----------------  612 (1093)
                      +..|.++.-.+.  +.+..+.||.   +.|.+++|...+.   +++++|.|..||||.+.-+.                 
T Consensus       168 ~~~v~~~s~~~d~f~~v~el~GH~---DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~  244 (764)
T KOG1063|consen  168 KFVVDLYSSSADSFARVAELEGHT---DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNL  244 (764)
T ss_pred             ceEEEEeccCCcceeEEEEeeccc---hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCC
Confidence            566777765433  4567778888   9999999987654   67889999999999875322                 


Q ss_pred             ----eEEEEe--------cCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceee--ecc-----cccccceeeee
Q 001352          613 ----LLTTID--------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----VLSDNLRKLSV  673 (1093)
Q Consensus       613 ----~~~~~~--------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~-----~~~~~i~~~~~  673 (1093)
                          ....+.        ..+|...|+++.|+|.+..|.+++.|.++.+|...+..-+.  ..+     +.........|
T Consensus       245 ~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw  324 (764)
T KOG1063|consen  245 PVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW  324 (764)
T ss_pred             ceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEE
Confidence                111111        12456789999999999999999999999999987653322  221     11111222222


Q ss_pred             cCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEe
Q 001352          674 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL  753 (1093)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~  753 (1093)
                                            +|++..+++-+..|..++|.  +.+.......... .+|...|..++|.|.|++++++
T Consensus       325 ----------------------~~n~~~ii~~g~~Gg~hlWk--t~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsv  379 (764)
T KOG1063|consen  325 ----------------------SPNSNVIIAHGRTGGFHLWK--TKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSV  379 (764)
T ss_pred             ----------------------cCCCCEEEEecccCcEEEEe--ccCccceeecccc-ccccccceeeeecCCCCEEEEe
Confidence                                  57788889999999999998  2233333322222 4699999999999999999999


Q ss_pred             eccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeC-CeEEEEEcc
Q 001352          754 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVM  832 (1093)
Q Consensus       754 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~~  832 (1093)
                      +.|.+-|++---.++.             -|.     ++....    -|....+|++|-+....+++|.| ..+|+|+..
T Consensus       380 s~DQTTRlFa~wg~q~-------------~wH-----EiaRPQ----iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP  437 (764)
T KOG1063|consen  380 SLDQTTRLFARWGRQQ-------------EWH-----EIARPQ----IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP  437 (764)
T ss_pred             ccccceeeeccccccc-------------cee-----eecccc----cccccceeeehccCCceeeecccceeeeeecCc
Confidence            9999888864221100             021     111111    27778888888875555555554 667787742


Q ss_pred             C-------------------------------------------cee---------------------------------
Q 001352          833 T-------------------------------------------FKT---------------------------------  836 (1093)
Q Consensus       833 ~-------------------------------------------~~~---------------------------------  836 (1093)
                      .                                           |..                                 
T Consensus       438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE  517 (764)
T KOG1063|consen  438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE  517 (764)
T ss_pred             HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence            1                                           100                                 


Q ss_pred             EEEECCCCCCeEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcE
Q 001352          837 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI  911 (1093)
Q Consensus       837 ~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i  911 (1093)
                      ++.+.+|..+|.+++.+| +++++|+++...     .|++|+..+...+..+.+|+-.|+.++|||||++|+++|.|+++
T Consensus       518 v~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~  596 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTV  596 (764)
T ss_pred             hHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceE
Confidence            113457888999999999 999999988654     79999999988888999999999999999999999999999999


Q ss_pred             EEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCc--ceeee-eecCCCCCEEEEEE
Q 001352          912 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL--TCLKQ-WFPISSVPISQATF  987 (1093)
Q Consensus       912 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~--~~~~~-~~~~h~~~v~~~~f  987 (1093)
                      .+|........... ......|..   -|.++.|+||+.++|+ +.|.+|+||.....  +.+.. -...++.+|+.+++
T Consensus       597 sl~~~~~~~~~e~~-fa~~k~HtR---IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~  672 (764)
T KOG1063|consen  597 SLYEVQEDIKDEFR-FACLKAHTR---IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAY  672 (764)
T ss_pred             Eeeeeecccchhhh-hccccccce---EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEe
Confidence            99998664432222 222333432   5899999999999999 68999999999887  55544 23456889999999


Q ss_pred             cc-----CCCEEEEEeCCCcEEEEEcCCCce---EEEecc-ccccCCCCCCCccceeEEEeCCC---------CCCEEEE
Q 001352          988 SC-----DCRMVFTSFVDGTLSIHEASNLEV---QCRILS-TAYLRPTTSCLHVYPHAIAAHPL---------KPTQFAV 1049 (1093)
Q Consensus       988 s~-----dg~~l~t~~~dg~v~vwd~~~~~~---~~~~~~-~~~~~~~~~~~~v~~~~~~~~p~---------d~~~l~~ 1049 (1093)
                      .|     .+..+++|-..|.|.+|....-..   ...+.. ...-+...+.+.|.  .+.|.|.         ....|++
T Consensus       673 ~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~--rl~w~p~~~~~~~~~~~~l~la~  750 (764)
T KOG1063|consen  673 LPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVN--RLLWRPTCSDDWVEDKEWLNLAV  750 (764)
T ss_pred             eccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhh--eeEeccccccccccccceeEEee
Confidence            87     233778888999999999661111   001110 01111112334454  4566653         2245799


Q ss_pred             EeCCCcEEEEecC
Q 001352         1050 GLTNGEVYVIEPN 1062 (1093)
Q Consensus      1050 ~~~dg~v~~w~~~ 1062 (1093)
                      |++|..++++++.
T Consensus       751 ~g~D~~vri~nv~  763 (764)
T KOG1063|consen  751 GGDDESVRIFNVD  763 (764)
T ss_pred             ecccceeEEeecc
Confidence            9999999999874

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=9.7e-37  Score=283.11  Aligned_cols=294  Identities=16%  Similarity=0.273  Sum_probs=251.9

Q ss_pred             CceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEc
Q 001352          347 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAY  426 (1093)
Q Consensus       347 g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~  426 (1093)
                      ..-+|++++.|.+|++|...+|.+.++                   +....+.|..+...||+++||+++... |++||+
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~   68 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDL   68 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEEc
Confidence            335899999999999999999999886                   444678899999999999999997664 999999


Q ss_pred             cCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEE
Q 001352          427 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI  506 (1093)
Q Consensus       427 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~  506 (1093)
                      .++..- +..++.+|...|+++.|..||+  +++|||.||+++|||++...+.+.++ |..+|+++.++|.  ..-|++|
T Consensus        69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn--QteLis~  142 (311)
T KOG0315|consen   69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN--QTELISG  142 (311)
T ss_pred             cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC--cceEEee
Confidence            998753 5668999999999999999999  89999999999999999977777775 7899999999764  4689999


Q ss_pred             ecCCeEEEEEcCCCCceEEe-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe------eeeeeecccccC
Q 001352          507 SVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQLQH  579 (1093)
Q Consensus       507 ~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~~~~  579 (1093)
                      ..+|.|++||+........+ ......|.+++..|||.+++.+..    .|..++|++-++.      ++..++.|.   
T Consensus       143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~---  215 (311)
T KOG0315|consen  143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN---  215 (311)
T ss_pred             cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc---
Confidence            99999999999987665544 344568999999999999999865    6679999987653      345566666   


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceee
Q 001352          580 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD  659 (1093)
Q Consensus       580 ~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  659 (1093)
                      +.+..+.+||++++|+++|.|.+++||+.++. ....+...++...+..++||.||++|++++.|+..++|++..++.+.
T Consensus       216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~  294 (311)
T KOG0315|consen  216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR  294 (311)
T ss_pred             ceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence            88999999999999999999999999999988 33333344445679999999999999999999999999999999999


Q ss_pred             ecccccccceeeeec
Q 001352          660 AAGVLSDNLRKLSVN  674 (1093)
Q Consensus       660 ~~~~~~~~i~~~~~~  674 (1093)
                      ...+|.....|++..
T Consensus       295 qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  295 QYQGHHKAAVCVALN  309 (311)
T ss_pred             ecCCcccccEEEEee
Confidence            999998887777654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.5e-37  Score=331.85  Aligned_cols=278  Identities=18%  Similarity=0.260  Sum_probs=241.3

Q ss_pred             cCCchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeE--------Eeeeeeeec----ccccce
Q 001352          320 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF--------IRNFKVWDI----GACSML  387 (1093)
Q Consensus       320 ~~~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~--------~~~~~~~~~----~~~~~~  387 (1093)
                      ...+|.-|..++..-...++|+.||+|++ ++|.|..|..|++|.+...+...        ......-|+    ..-...
T Consensus       363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~  441 (707)
T KOG0263|consen  363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS  441 (707)
T ss_pred             CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence            56677777888776677999999999998 79999999999999998533211        111001111    111122


Q ss_pred             eeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCc
Q 001352          388 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT  467 (1093)
Q Consensus       388 ~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~  467 (1093)
                      .....+.||+++|..+.|+|+.++|++++.|++|++|.+.+..++.   .+.||..+|+++.|+|-|-  +++|+|.|++
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t  516 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT  516 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence            2334488999999999999999999999999999999999986554   6789999999999999998  8999999999


Q ss_pred             EEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001352          468 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  547 (1093)
Q Consensus       468 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~  547 (1093)
                      .++|......+++.+.+|-+.|.|+.|+|  +..++++||.|.+||+||..++..+..+.+|.++|.+++|||+|++|++
T Consensus       517 ArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS  594 (707)
T KOG0263|consen  517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS  594 (707)
T ss_pred             eeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence            99999999999999999999999999977  5579999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001352          548 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  612 (1093)
Q Consensus       548 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~  612 (1093)
                      ++.    ++.|.+||+.+++++..+.+|.   +.|.++.|+.+|..|++|+.|.+|++||+..-.
T Consensus       595 g~e----d~~I~iWDl~~~~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  595 GDE----DGLIKIWDLANGSLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             ccc----CCcEEEEEcCCCcchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            976    7789999999999999999997   999999999999999999999999999987533

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5e-36  Score=283.72  Aligned_cols=295  Identities=16%  Similarity=0.188  Sum_probs=248.6

Q ss_pred             cccccceEEEEeecC-CceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEE
Q 001352          732 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA  810 (1093)
Q Consensus       732 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  810 (1093)
                      .+|.+.|..++..+. ...++.++.|..+.+|++...                 |...|.....  +.  +|...|..++
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~--~~--GHsH~v~dv~   70 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR--LT--GHSHFVSDVV   70 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee--ee--ccceEecceE
Confidence            458999999999887 456777888999999998754                 3334443333  33  4999999999


Q ss_pred             EccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeeccc--cc
Q 001352          811 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG--HS  887 (1093)
Q Consensus       811 ~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~--h~  887 (1093)
                      .++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|+... .+..++..  |+
T Consensus        71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~  148 (315)
T KOG0279|consen   71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHR  148 (315)
T ss_pred             EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecc-cEEEEEecCCCc
Confidence            999999999998 89999999999999999999999999999999 899999999999999999985 44444443  38


Q ss_pred             CCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEE
Q 001352          888 KRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE  964 (1093)
Q Consensus       888 ~~V~~l~~s~d--g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd  964 (1093)
                      +.|.|+.|+|+  ..+++++|.|++|++||+.+     ++..+.+.+|..   .++.+++||||.++++ +.||.+.+||
T Consensus       149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----~~l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~Lwd  220 (315)
T KOG0279|consen  149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----CQLRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWD  220 (315)
T ss_pred             CcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----cchhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEE
Confidence            89999999998  68999999999999999998     445666777765   8999999999999999 6899999999


Q ss_pred             cCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCC
Q 001352          965 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1044 (1093)
Q Consensus       965 ~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1044 (1093)
                      ++.++.+..  .+|...|.+++|+|+.-.|+.+ .+..|+|||++++..+..+.+-..-+ ......+.+++++|++ ||
T Consensus       221 L~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG  295 (315)
T KOG0279|consen  221 LNEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DG  295 (315)
T ss_pred             ccCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CC
Confidence            999999664  4578999999999998666655 56679999999999988776433333 2345567889999999 69


Q ss_pred             CEEEEEeCCCcEEEEecC
Q 001352         1045 TQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus      1045 ~~l~~~~~dg~v~~w~~~ 1062 (1093)
                      ..|.+|..|+.|++|.+.
T Consensus       296 ~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  296 QTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cEEEeeecCCcEEEEEee
Confidence            999999999999999985

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.1e-35  Score=304.27  Aligned_cols=464  Identities=14%  Similarity=0.207  Sum_probs=344.3

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +..++..|.++.|+|...+++++-.+|.|.||+.++...++   .+.-..-+|.+..|-+--+  ++++|+.|..|+||+
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN   83 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence            44589999999999999999999999999999999987776   5666778999999998877  899999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEcc-CCCEEEEEec
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT  550 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~  550 (1093)
                      ..+++.++.|..|...|++++.+|..  .+++++|.|-+|++||++.. .+.+++.+|.+-|.+++|.| |.+.+++++-
T Consensus        84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence            99999999999999999999998765  69999999999999999875 45678999999999999999 5678899887


Q ss_pred             CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352          551 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  628 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  628 (1093)
                          |++|.+|.+.+..+..++++|.   ..|+++.+-+-|  .++++|+.|.+++|||.++..+++++.+|.+  .|..
T Consensus       162 ----DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~  232 (794)
T KOG0276|consen  162 ----DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSF  232 (794)
T ss_pred             ----cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceE
Confidence                7779999999999999999998   899999997644  7999999999999999999999999997755  5999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352          629 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  708 (1093)
Q Consensus       629 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  708 (1093)
                      ++|+|.-..+++|+.||+++||...+-+....+.-..+.                                         
T Consensus       233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleR-----------------------------------------  271 (794)
T KOG0276|consen  233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLER-----------------------------------------  271 (794)
T ss_pred             EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCce-----------------------------------------
Confidence            999999999999999999999998876555544433333                                         


Q ss_pred             ccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCC
Q 001352          709 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH  788 (1093)
Q Consensus       709 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1093)
                                                   +.+++..+.+..++.|..+|.+.+=                          
T Consensus       272 -----------------------------vW~I~~~k~~~~i~vG~Deg~i~v~--------------------------  296 (794)
T KOG0276|consen  272 -----------------------------VWCIAAHKGDGKIAVGFDEGSVTVK--------------------------  296 (794)
T ss_pred             -----------------------------EEEEeecCCCCeEEEeccCCcEEEE--------------------------
Confidence                                         3444444444444555544544430                          


Q ss_pred             CCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeC--CeEEEE------EccCceeEE----EECCCCCCeEEEEEcCCC
Q 001352          789 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--GVISLY------IVMTFKTIL----TIMPPSPTATSLAFNPHD  856 (1093)
Q Consensus       789 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d--g~i~iw------d~~~~~~~~----~~~~~~~~i~~l~~s~~d  856 (1093)
                                   -......+..++.|+.+-+...  -.+.+-      ++..|+.+.    .+-...-....++-+| +
T Consensus       297 -------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-N  362 (794)
T KOG0276|consen  297 -------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-N  362 (794)
T ss_pred             -------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-C
Confidence                         0011112233333332222211  001111      222232221    1111112234678899 8


Q ss_pred             CCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccC
Q 001352          857 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  936 (1093)
Q Consensus       857 ~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  936 (1093)
                      |++++++ .||.-.||..-..+     ..+.+.-....|++|.+..++--.++.|+++  ...+..+     ....    
T Consensus       363 GrfV~Vc-gdGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~k-----si~~----  425 (794)
T KOG0276|consen  363 GRFVVVC-GDGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHK-----SIRP----  425 (794)
T ss_pred             CcEEEEe-cCccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecc-----cccc----
Confidence            9887755 48888888632211     1245566778999998899988888889988  3322111     1110    


Q ss_pred             CCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001352          937 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1007 (1093)
Q Consensus       937 ~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd 1007 (1093)
                         -..+.+--.|.+|.+..++.+++||.++++.++.+..    ....+.|+.+|.+++.++.|. .++..
T Consensus       426 ---~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v----~~k~v~w~d~g~lVai~~d~S-fyil~  488 (794)
T KOG0276|consen  426 ---DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV----TSKHVYWSDNGELVAIAGDDS-FYILK  488 (794)
T ss_pred             ---ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee----ccceeEEecCCCEEEEEecCc-eeEEE
Confidence               0113333456677778899999999999999988543    456789999999988887664 44443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-34  Score=311.70  Aligned_cols=583  Identities=16%  Similarity=0.226  Sum_probs=401.1

Q ss_pred             hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352          331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  410 (1093)
Q Consensus       331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~  410 (1093)
                      ++..+..|..++|+|...+ +.++-.+|.|.+||..-+.++..                   +.+|.++|..++|+|++.
T Consensus         5 fEskSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qp   64 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQP   64 (1202)
T ss_pred             hhcccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCC
Confidence            4456679999999999985 77888999999999999988876                   778999999999999999


Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  490 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~  490 (1093)
                      ++++|++|..|+||+..+.+++.   ++.||.+.|..+.|++.-.  +++|+|.|.+|+||++.+++++..+.||...|.
T Consensus        65 lFVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVM  139 (1202)
T KOG0292|consen   65 LFVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM  139 (1202)
T ss_pred             eEEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence            99999999999999999987665   7889999999999999877  899999999999999999999999999999999


Q ss_pred             EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352          491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  570 (1093)
Q Consensus       491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~  570 (1093)
                      |..|+|..|  .++++|-|.+||+||+...+....-.+      ++.-.+.+..+.           .-++-....-...
T Consensus       140 cAqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~  200 (1202)
T KOG0292|consen  140 CAQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKH  200 (1202)
T ss_pred             eeccCCccc--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeee
Confidence            999998775  899999999999999875443322111      000001111110           0111111122345


Q ss_pred             eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001352          571 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  650 (1093)
Q Consensus       571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  650 (1093)
                      .+.||.   ..|+-++|+|.-..+++|+.|..|++|.+..-+.-..-...++...|.++-|+|...++++.+.|++|++|
T Consensus       201 VLEGHD---RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw  277 (1202)
T KOG0292|consen  201 VLEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW  277 (1202)
T ss_pred             eecccc---cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence            678888   88999999999999999999999999998765543333344556679999999999999999999999999


Q ss_pred             EcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCC-----CCCCccceeecccccceecceeeccCcccc
Q 001352          651 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-----KEDVKPEISVEAENKSEVEKPLFARPSECQ  725 (1093)
Q Consensus       651 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~  725 (1093)
                      |+...+.+++++...+..+.++..|.....+.|-..|.+.|.-.-     .-.++.+...- |..|+.+|+.+.......
T Consensus       278 Dm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~  356 (1202)
T KOG0292|consen  278 DMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVA  356 (1202)
T ss_pred             ecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccccccceeE
Confidence            999999999999999999999999999999999888888884331     12333343333 788888998775555554


Q ss_pred             ccccCccccccceEEEEeecCCceEEEee--ccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCC
Q 001352          726 SLLLPSKVKANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ  803 (1093)
Q Consensus       726 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  803 (1093)
                      .++.+.. ...++.++.++|....++.++  .+|...++.++........            ....       .    ..
T Consensus       357 ~lr~~g~-~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~------------~~~~-------~----k~  412 (1202)
T KOG0292|consen  357 SLRRPGT-LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSD------------GKDV-------K----KG  412 (1202)
T ss_pred             eccCCCc-ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCC------------chhh-------h----cC
Confidence            4443331 335678899999877665553  3467777766554210000            0000       0    11


Q ss_pred             CCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec
Q 001352          804 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  883 (1093)
Q Consensus       804 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l  883 (1093)
                      .....+-.+.++-.+..-++..+.+-++.+ +..+.+... .....+-+.. .|.+|+.  ....|.+||++..+.+..+
T Consensus       413 tG~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si  487 (1202)
T KOG0292|consen  413 TGEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSI  487 (1202)
T ss_pred             CCCceEEEEecceEEEEecCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEE
Confidence            112222222222222222234444444432 222223222 2344455554 5655543  3456999999988877777


Q ss_pred             ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEE
Q 001352          884 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY  963 (1093)
Q Consensus       884 ~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vw  963 (1093)
                      +  ...|..+.||+|..+++--+. .+|.|.+.+-.      .+......    -+|.+-+|.-+|-+|.+..+.- + |
T Consensus       488 ~--~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL~------l~~sihEt----iriksgawde~gVfiYtT~nHi-k-Y  552 (1202)
T KOG0292|consen  488 K--VSKVKYVVWSNDMSRVALLSK-HTITIADKKLE------LLCSIHET----IRIKSGAWDEDGVFIYTTLNHI-K-Y  552 (1202)
T ss_pred             e--cCceeEEEEcCccchhhhccc-ceEEEEecchh------heecchhe----eEeeeceeccCceEEEEehhhh-h-h
Confidence            5  467899999999988887665 45888876541      22222111    1477788888888877643321 0 1


Q ss_pred             EcCCcc--eeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001352          964 EAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus       964 d~~~~~--~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
                      -+.+|.  .++++    ..++.-..  -.|..+++-..|+.+...+++.-
T Consensus       553 al~~GD~GIikTL----d~~iyitk--v~gn~V~cl~rd~~~~~~~IDpt  596 (1202)
T KOG0292|consen  553 ALENGDSGIIKTL----DKPIYITK--VKGNKVFCLNRDGEIECLTIDPT  596 (1202)
T ss_pred             hhccCCcceEEec----ccceEEEE--eeCCEEEEEecCCCeEEEeechH
Confidence            111111  11111    11222222  24667777777888888777654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-36  Score=296.98  Aligned_cols=292  Identities=22%  Similarity=0.337  Sum_probs=268.1

Q ss_pred             HHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352          326 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  405 (1093)
Q Consensus       326 ~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  405 (1093)
                      +..+.|.||...|+.+-|+|+-. ++++++.|++|++||..+|+....                   ++||...|..++|
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~  158 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF  158 (406)
T ss_pred             CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence            56678889999999999999997 799999999999999999998765                   8899999999999


Q ss_pred             CCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecC
Q 001352          406 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  485 (1093)
Q Consensus       406 s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h  485 (1093)
                      +..|++||+++.|-.+++||.++-  .++...+.+|...|.+++|-|.|.  ++++++.|.+|+.|++.+|-+++++.+|
T Consensus       159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h  234 (406)
T KOG0295|consen  159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH  234 (406)
T ss_pred             ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence            999999999999999999999873  334446779999999999999998  8999999999999999999999999999


Q ss_pred             CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC---------------CCEEEEEec
Q 001352          486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN---------------GRRLFSCGT  550 (1093)
Q Consensus       486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d---------------~~~l~~~~~  550 (1093)
                      ...|..+..  ..||.++++++.|.++++|-+.+..+...+..|+.+|.+++|.|.               +.++.+++.
T Consensus       235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr  312 (406)
T KOG0295|consen  235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR  312 (406)
T ss_pred             hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence            999998887  678999999999999999999999999999999999999999773               236666665


Q ss_pred             CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352          551 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  630 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  630 (1093)
                          |+.|++||+.+|.++.++.+|.   ..|..++|+|.|+||+++.+|+++++||+++++++..++.+.+  -++++.
T Consensus       313 ----DktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lD  383 (406)
T KOG0295|consen  313 ----DKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLD  383 (406)
T ss_pred             ----cceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEe
Confidence                7789999999999999999999   9999999999999999999999999999999999999998766  489999


Q ss_pred             EecCCCEEEEEECCCeEEEEEc
Q 001352          631 FNKNGTLLAVIANENRIKILET  652 (1093)
Q Consensus       631 ~s~~~~~l~~~~~dg~i~iw~~  652 (1093)
                      |+.+..++++|+-|.++++|.-
T Consensus       384 fh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  384 FHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             cCCCCceEEeccccceeeeeec
Confidence            9999999999999999999974

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=6.1e-33  Score=282.89  Aligned_cols=524  Identities=12%  Similarity=0.168  Sum_probs=378.2

Q ss_pred             eeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCC
Q 001352          340 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH  419 (1093)
Q Consensus       340 ~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~  419 (1093)
                      .+-+-|.|..+..++   +.+.+++++...+..                    +.||+..|.|++.+||.-++|+|-..|
T Consensus        70 Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~vHPdri~vatGQ~ag  126 (626)
T KOG2106|consen   70 NLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMAVHPDRIRVATGQGAG  126 (626)
T ss_pred             eeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEeecCCceeeccCcccc
Confidence            345667776333333   456677765533322                    678999999999999999999874443


Q ss_pred             --------EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCc--EEEEEEcCCCcEEEEECCCCceeEEeecCCCCe
Q 001352          420 --------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ--ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  489 (1093)
Q Consensus       420 --------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~--l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v  489 (1093)
                              .+++||..+-..+.   .+......|+|++||+-...  +..+--+.+..+.|||+..+......+..+..|
T Consensus       127 ~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v  203 (626)
T KOG2106|consen  127 TSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVV  203 (626)
T ss_pred             cCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceE
Confidence                    59999987754343   56667778999999986432  223334566779999999999888888888889


Q ss_pred             EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE---ecCC-CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352          490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  565 (1093)
Q Consensus       490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~-~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~  565 (1093)
                      ....|+|...  .++.....|.+.+|+++.+.....   +..+ ...|.+++|.++|..+- +    |.++.|.||+..+
T Consensus       204 ~~a~FHPtd~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g----DS~G~i~Iw~~~~  276 (626)
T KOG2106|consen  204 FLATFHPTDP--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G----DSGGNILIWSKGT  276 (626)
T ss_pred             EEEEeccCCC--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e----cCCceEEEEeCCC
Confidence            9999988754  355555678999999987765443   2222 25799999999998663 3    3377899999988


Q ss_pred             CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352          566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  645 (1093)
Q Consensus       566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  645 (1093)
                      .+..+....|.   +.|.+++...+|. |++|+.|..|..|| ..-+.++..+.......+..++=...+  +++|+..+
T Consensus       277 ~~~~k~~~aH~---ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN  349 (626)
T KOG2106|consen  277 NRISKQVHAHD---GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRN  349 (626)
T ss_pred             ceEEeEeeecC---CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccc
Confidence            77777766666   9999999999885 55599999999999 455555555555545556665543322  66776665


Q ss_pred             eEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcccc
Q 001352          646 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  725 (1093)
Q Consensus       646 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~  725 (1093)
                      .|..=.+.++..+                                                                   
T Consensus       350 ~iL~Gt~~~~f~~-------------------------------------------------------------------  362 (626)
T KOG2106|consen  350 FILQGTLENGFTL-------------------------------------------------------------------  362 (626)
T ss_pred             eEEEeeecCCceE-------------------------------------------------------------------
Confidence            5544333322111                                                                   


Q ss_pred             ccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCC
Q 001352          726 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA  805 (1093)
Q Consensus       726 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  805 (1093)
                          ...+|......++..|+...+++++.|+.+++|+  ..+             .+|...              ...+
T Consensus       363 ----~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-------------~~wt~~--------------~~d~  409 (626)
T KOG2106|consen  363 ----TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-------------LEWTKI--------------IEDP  409 (626)
T ss_pred             ----EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc-------------eeEEEE--------------ecCc
Confidence                1123666778888999999999999999999997  111             122211              3567


Q ss_pred             eeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-ceeeec
Q 001352          806 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKL  883 (1093)
Q Consensus       806 v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~-~~~~~l  883 (1093)
                      +.|+.|+|.| .+|.|. .|...+.|.++...+..-.. ..++++++|+| +|.+||+|+.|+.|+||.+..+ ....+.
T Consensus       410 ~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~  486 (626)
T KOG2106|consen  410 AECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRV  486 (626)
T ss_pred             eeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence            8899999999 888887 69999999999665555444 88999999999 9999999999999999998764 333333


Q ss_pred             c-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeee---------ee---eecCCCcccCCCCceEEEEccCCC
Q 001352          884 E-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC---------RS---LQTPDGVMTLAPSETHIQFHKDQT  950 (1093)
Q Consensus       884 ~-~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~---------~~---~~~~~~~~~~~~~v~~~~~s~dg~  950 (1093)
                      . .|..+|+.+.||+|+++|.+.+.|-.|..|.-..-.....         .+   .....+  ..+..+..++-|.+.+
T Consensus       487 ~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~--s~~t~i~a~~rs~~~~  564 (626)
T KOG2106|consen  487 GKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGG--SDGTDINAVARSHCEK  564 (626)
T ss_pred             eeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecc--cCCchHHHhhhhhhhh
Confidence            2 2448999999999999999999999999994332211110         00   111111  1113577888889999


Q ss_pred             EEEEE-eCCeEEEEEcCCcc--eeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001352          951 RFLLV-HETHLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1008 (1093)
Q Consensus       951 ~l~~~-~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~ 1008 (1093)
                      ++|++ ..|+|++|...--+  .....+.+|++.|++++|+.+...|++.+.|.+|..|++
T Consensus       565 ~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  565 LLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             hhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            99997 45899999876433  233446789999999999999999998889999999986

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.1e-35  Score=287.83  Aligned_cols=333  Identities=15%  Similarity=0.191  Sum_probs=287.4

Q ss_pred             HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      .+.+|..|++.|.+++.+|+.+ ++|||+.|....||+..+|.....                   +.+|++.|+++.||
T Consensus        56 S~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~Fs  115 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCSFS  115 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEEEc
Confidence            4567889999999999999776 799999999999999999997765                   88999999999999


Q ss_pred             CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC
Q 001352          407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  486 (1093)
Q Consensus       407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~  486 (1093)
                      .||.+||+|+.+|.|+||+..++....   .+......|.-+.|+|.+.  +|+.|+.||.+-+|.+.++...+.+.||.
T Consensus       116 hdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~  190 (399)
T KOG0296|consen  116 HDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHN  190 (399)
T ss_pred             cCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCC
Confidence            999999999999999999999987554   4545667788999999888  89999999999999999998899999999


Q ss_pred             CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352          487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  565 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~  565 (1093)
                      .++++=.|.|  +|+.++++..||+|++|+..+..+....... .....++.++..+..++.|..    ++.+++-+..+
T Consensus       191 ~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~~s  264 (399)
T KOG0296|consen  191 SPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNNGS  264 (399)
T ss_pred             CCcccccccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEcccc
Confidence            9999999955  6899999999999999999999888877643 446778899999999888875    56688888888


Q ss_pred             Ceeeeeeec--------ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCE
Q 001352          566 GAIKRTYQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL  637 (1093)
Q Consensus       566 ~~~~~~~~~--------~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~  637 (1093)
                      |+.+....+        +......|.++.++..-...++|+.||+|.|||+...++.......   ..|..+.|-+ ..+
T Consensus       265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he---~~V~~l~w~~-t~~  340 (399)
T KOG0296|consen  265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHE---DGVTKLKWLN-TDY  340 (399)
T ss_pred             ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCC---CceEEEEEcC-cch
Confidence            887776663        2211233444555555677889999999999999988887777655   3489999998 789


Q ss_pred             EEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecce
Q 001352          638 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP  716 (1093)
Q Consensus       638 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~  716 (1093)
                      |++++.+|.|+.||.++++....+.+|...|.+++++                      |+.+++++++.|++.++|+.
T Consensus       341 l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  341 LLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             heeeccCceEEeeeccccceEEEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEec
Confidence            9999999999999999999999999999999999986                      78889999999999999875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2e-34  Score=283.07  Aligned_cols=339  Identities=18%  Similarity=0.230  Sum_probs=287.1

Q ss_pred             EeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEE
Q 001352          437 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL  516 (1093)
Q Consensus       437 ~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd  516 (1093)
                      .|..|+..|.+++.+|+.+  +++||+.|....+|++.+|.....+.+|...|+++.|  +.+|.+|++|+.+|.|+||+
T Consensus        59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~F--shdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSF--SHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEE--ccCceEEEecCCCccEEEEE
Confidence            6778999999999999777  8999999999999999999999999999999999999  55789999999999999999


Q ss_pred             cCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE
Q 001352          517 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA  596 (1093)
Q Consensus       517 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  596 (1093)
                      ..++.....+......+.-+.|+|.+..|++|+.    ++.+.+|.+.++...+.+.||.   .++++-.|.|+|+++++
T Consensus       135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT  207 (399)
T ss_pred             cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence            9999999999888889999999999999999986    6679999999988899999988   89999999999999999


Q ss_pred             EeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCC
Q 001352          597 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI  676 (1093)
Q Consensus       597 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~  676 (1093)
                      +..||+|++||..+++++..+....+ ....++.++..+..++.|..++.+.+-+..+++.+....+             
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~-------------  273 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG-------------  273 (399)
T ss_pred             EecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence            99999999999999999998875554 3568899999999999999988887766554432211110             


Q ss_pred             CceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecc
Q 001352          677 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN  756 (1093)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  756 (1093)
                                                                                           ++..+....  
T Consensus       274 ---------------------------------------------------------------------~~~~l~~~~--  282 (399)
T KOG0296|consen  274 ---------------------------------------------------------------------TVPELKPSQ--  282 (399)
T ss_pred             ---------------------------------------------------------------------CCccccccc--
Confidence                                                                                 000000000  


Q ss_pred             ceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCce
Q 001352          757 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK  835 (1093)
Q Consensus       757 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~  835 (1093)
                                                                 ......|..+.++..-.+.|+|+ ||+|.|||+.+.+
T Consensus       283 -------------------------------------------e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~  319 (399)
T KOG0296|consen  283 -------------------------------------------EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST  319 (399)
T ss_pred             -------------------------------------------hhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence                                                       00223344455555667778887 8999999998877


Q ss_pred             eEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q 001352          836 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  915 (1093)
Q Consensus       836 ~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd  915 (1093)
                      ....+. |...|+.+.|-+  ..+|++++.+|.|+.||.++|+++..+.||..+|.+++++|+.++++|+|.|++.+|++
T Consensus       320 ~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  320 LRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             hheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            655554 888899999986  56899999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 001352          916 VD  917 (1093)
Q Consensus       916 ~~  917 (1093)
                      +.
T Consensus       397 v~  398 (399)
T KOG0296|consen  397 VP  398 (399)
T ss_pred             cC
Confidence            74

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.9e-35  Score=286.19  Aligned_cols=298  Identities=18%  Similarity=0.266  Sum_probs=267.8

Q ss_pred             CchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE
Q 001352          322 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  401 (1093)
Q Consensus       322 ~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  401 (1093)
                      ..|-.+.+.+.||-+.|.|+++.|-.. ++++|+.|++|+|||+.+|++..+                   +.||-..|.
T Consensus       138 HapwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr  197 (460)
T KOG0285|consen  138 HAPWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVR  197 (460)
T ss_pred             cCcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheee
Confidence            345678889999999999999999987 699999999999999999998876                   889999999


Q ss_pred             EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352          402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  481 (1093)
Q Consensus       402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  481 (1093)
                      .+++|+--.||.+++.|+.|+.||++..+.++   .+.||-..|.|++..|.-.  +|+||+.|.+++|||+++...+..
T Consensus       198 ~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~  272 (460)
T KOG0285|consen  198 GVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHV  272 (460)
T ss_pred             eeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEE
Confidence            99999999999999999999999999998877   6779999999999999988  899999999999999999999999


Q ss_pred             eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001352          482 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  561 (1093)
Q Consensus       482 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw  561 (1093)
                      +.||..+|.++.+.+.+  ..+++|+.|++|++||+..++....+..|...+.+++.+|....+++++.+     .|..|
T Consensus       273 l~GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----nik~w  345 (460)
T KOG0285|consen  273 LSGHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NIKQW  345 (460)
T ss_pred             ecCCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----cceec
Confidence            99999999999886543  579999999999999999999999999999999999999999999998753     39999


Q ss_pred             eCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe---cCC---CCCCCceEEEecCC
Q 001352          562 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGG---GLPENPRICFNKNG  635 (1093)
Q Consensus       562 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s~~~  635 (1093)
                      ++..|..+..+.+|.   ..+.+++...|+ ++++|+++|.+..||.++|-..+...   ..+   ....|.+.+|...|
T Consensus       346 ~~p~g~f~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg  421 (460)
T KOG0285|consen  346 KLPEGEFLQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG  421 (460)
T ss_pred             cCCccchhhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence            999999999988888   889999998774 88999999999999999986655442   111   22457889999999


Q ss_pred             CEEEEEECCCeEEEEEcCCC
Q 001352          636 TLLAVIANENRIKILETPES  655 (1093)
Q Consensus       636 ~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      ..|+++..|.+|++|.-...
T Consensus       422 ~rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  422 SRLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             ceEEeccCCcceEEEecccc
Confidence            99999999999999986643

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-33  Score=262.58  Aligned_cols=295  Identities=17%  Similarity=0.253  Sum_probs=251.7

Q ss_pred             cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--eeeeeeccccc
Q 001352          501 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQ  578 (1093)
Q Consensus       501 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~  578 (1093)
                      -+|++++.|.+||+|...++.+..++....+.|..+.+.||++.|++++     ...|++||+++++  ++.++.+|.  
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~--   83 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT--   83 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC--
Confidence            5899999999999999999999999999999999999999999999987     4459999999875  588899988  


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCcee
Q 001352          579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV  658 (1093)
Q Consensus       579 ~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  658 (1093)
                       ..|.++.|..+|+++++||+||+++|||++...+.+.+...   .+|+++..+|+...|+++..+|.|++||+.+....
T Consensus        84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~  159 (311)
T KOG0315|consen   84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT  159 (311)
T ss_pred             -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence             89999999999999999999999999999996666666543   56999999999999999999999999999866332


Q ss_pred             eecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccce
Q 001352          659 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI  738 (1093)
Q Consensus       659 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i  738 (1093)
                      ..+-                                                                   |+  ....|
T Consensus       160 ~~li-------------------------------------------------------------------Pe--~~~~i  170 (311)
T KOG0315|consen  160 HELI-------------------------------------------------------------------PE--DDTSI  170 (311)
T ss_pred             cccC-------------------------------------------------------------------CC--CCcce
Confidence            2211                                                                   11  23568


Q ss_pred             EEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEE
Q 001352          739 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL  818 (1093)
Q Consensus       739 ~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l  818 (1093)
                      .+++..|||..++++...|..++|++.....                 .+.. .....+  ..|...+..+.+|||+++|
T Consensus       171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l-~P~~k~--~ah~~~il~C~lSPd~k~l  230 (311)
T KOG0315|consen  171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASEL-EPVHKF--QAHNGHILRCLLSPDVKYL  230 (311)
T ss_pred             eeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccc-eEhhhe--ecccceEEEEEECCCCcEE
Confidence            8999999999999999999999999865321                 0000 011112  2488999999999999999


Q ss_pred             EEEe-CCeEEEEEccCc-eeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEe
Q 001352          819 FSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS  896 (1093)
Q Consensus       819 a~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s  896 (1093)
                      |+++ |.+++||+.++. +....+.+|...+..++||. |++||++|+.|+.+++|++..++.+....||.....|++..
T Consensus       231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             EeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            9998 799999999987 66778899999999999999 99999999999999999999999999999999888888764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.7e-32  Score=294.59  Aligned_cols=498  Identities=16%  Similarity=0.201  Sum_probs=356.0

Q ss_pred             cCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEEC
Q 001352          394 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  473 (1093)
Q Consensus       394 ~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~  473 (1093)
                      ...+..|..++|+|...+++++-..|.|++||..-+.++.   .+..|.++|..++|+|++.  +++|||.|..|+||+.
T Consensus         6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWnY   80 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWNY   80 (1202)
T ss_pred             hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEec
Confidence            3456789999999999999999999999999999988776   6789999999999999998  8999999999999999


Q ss_pred             CCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001352          474 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  553 (1093)
Q Consensus       474 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~  553 (1093)
                      .+.+++.++.||-..|+.+.|++.-  .+|+++|.|.+|+||++.+.+++..+.+|.+-|.|..|+|....+++++-   
T Consensus        81 k~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL---  155 (1202)
T KOG0292|consen   81 KTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL---  155 (1202)
T ss_pred             ccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc---
Confidence            9999999999999999999997643  69999999999999999999999999999999999999999999999987   


Q ss_pred             CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEE---EEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352          554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI---LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  630 (1093)
Q Consensus       554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  630 (1093)
                       |.+|++||+..-+....-.+         ++.=.+.+...   +-|+.|-          -....+.+  +...|+-++
T Consensus       156 -DQTVRVWDisGLRkk~~~pg---------~~e~~~~~~~~~~dLfg~~Da----------VVK~VLEG--HDRGVNwaA  213 (1202)
T KOG0292|consen  156 -DQTVRVWDISGLRKKNKAPG---------SLEDQMRGQQGNSDLFGQTDA----------VVKHVLEG--HDRGVNWAA  213 (1202)
T ss_pred             -cceEEEEeecchhccCCCCC---------CchhhhhccccchhhcCCcCe----------eeeeeecc--cccccceEE
Confidence             66799999865333222111         00000011111   1111221          12233444  455799999


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCCc--eeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352          631 FNKNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  708 (1093)
Q Consensus       631 ~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  708 (1093)
                      |+|.-.++++|++|..|++|.+...+  .+.+.++|.+.|.++.|+                      |....+++.+.|
T Consensus       214 fhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh----------------------p~q~lIlSnsED  271 (1202)
T KOG0292|consen  214 FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH----------------------PHQDLILSNSED  271 (1202)
T ss_pred             ecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec----------------------CccceeEecCCC
Confidence            99999999999999999999998664  467889999999999887                      567789999999


Q ss_pred             ccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCC
Q 001352          709 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH  788 (1093)
Q Consensus       709 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1093)
                      +++++||+......+++.-      ..++...++..|..+ +++++.|+.+.+|.++..                     
T Consensus       272 ksirVwDm~kRt~v~tfrr------endRFW~laahP~lN-LfAAgHDsGm~VFkleRE---------------------  323 (1202)
T KOG0292|consen  272 KSIRVWDMTKRTSVQTFRR------ENDRFWILAAHPELN-LFAAGHDSGMIVFKLERE---------------------  323 (1202)
T ss_pred             ccEEEEecccccceeeeec------cCCeEEEEEecCCcc-eeeeecCCceEEEEEccc---------------------
Confidence            9999999987776665543      456788999999999 555556666667665432                     


Q ss_pred             CCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCcee--EEEECCC---CCCeEEEEEcCCCCCEEEEE
Q 001352          789 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIMPP---SPTATSLAFNPHDNNVIAIG  863 (1093)
Q Consensus       789 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~--~~~~~~~---~~~i~~l~~s~~d~~~lasg  863 (1093)
                                     .+  +.++  ++..|....+..|+-+|+.+.+.  +..++..   ..+..++.++|..+..|++.
T Consensus       324 ---------------rp--a~~v--~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics  384 (1202)
T KOG0292|consen  324 ---------------RP--AYAV--NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICS  384 (1202)
T ss_pred             ---------------Cc--eEEE--cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEe
Confidence                           12  2233  34445555688999999987543  3334433   36789999999656566655


Q ss_pred             eCC-CeEEEEEcCCcceeeecc---c-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCC
Q 001352          864 MDD-STILIYNARSSEVISKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP  938 (1093)
Q Consensus       864 ~~d-g~i~iwd~~~~~~~~~l~---~-h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  938 (1093)
                      ..| |.-.++.+..... ....   . ......++ |-...++.+---.+..+.+-++.+...+   .++.+.       
T Consensus       385 ~~~n~~y~L~~ipk~~~-~~~~~~~~~k~tG~~a~-fvarNrfavl~k~~~~v~ik~l~N~vtk---kl~~~~-------  452 (1202)
T KOG0292|consen  385 NLDNGEYELVQIPKDSD-GVSDGKDVKKGTGEGAL-FVARNRFAVLDKSNEQVVIKNLKNKVTK---KLLLPE-------  452 (1202)
T ss_pred             ccCCCeEEEEEecCccc-ccCCchhhhcCCCCceE-EEEecceEEEEecCcceEEecccchhhh---cccCcc-------
Confidence            444 4555665543211 0111   0 11122222 3222233333333556777777653311   122221       


Q ss_pred             CceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001352          939 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus       939 ~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
                      ....+-+..+|.+|+ .....|.+||++.+..+.++.   -..|..+.||+|..+++--+. .+|.|.+..
T Consensus       453 ~~~~IF~ag~g~lll-~~~~~v~lfdvQq~~~~~si~---~s~vkyvvws~dm~~vAll~K-h~i~i~~kk  518 (1202)
T KOG0292|consen  453 STDDIFYAGTGNLLL-RSPDSVTLFDVQQKKKVGSIK---VSKVKYVVWSNDMSRVALLSK-HTITIADKK  518 (1202)
T ss_pred             cccceeeccCccEEE-EcCCeEEEEEeecceEEEEEe---cCceeEEEEcCccchhhhccc-ceEEEEecc
Confidence            233455555565554 445679999999888877755   357889999999887776654 356666543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.3e-33  Score=264.50  Aligned_cols=291  Identities=22%  Similarity=0.339  Sum_probs=239.5

Q ss_pred             HHhhccCCCCceeeeecCC-CceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          328 AQTLIEGSSSPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       328 ~~~l~~h~~~V~~~~~spd-g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      .+++++|++.|+.++|+|- |. +||+|+.|+.|+||+...+.-...               +..+-.+|+..|.++||+
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAws   70 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWS   70 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeec
Confidence            3578899999999999999 86 799999999999999986433221               112245799999999999


Q ss_pred             CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC---ceeEEee
Q 001352          407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFE  483 (1093)
Q Consensus       407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~~  483 (1093)
                      |.|++||++|.|.++.||.-..++ ......+.||...|.|++|+++|.  +|+|++.|++|-||.+..+   ++...++
T Consensus        71 p~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~  147 (312)
T KOG0645|consen   71 PHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQ  147 (312)
T ss_pred             CCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence            999999999999999999988654 455668999999999999999999  8999999999999998754   5678889


Q ss_pred             cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC---CCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352          484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  560 (1093)
Q Consensus       484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i  560 (1093)
                      .|...|..+.|+|..+  +|++++.|++|++|+-..   -....++.++...|.+++|++.|..|++++.    ++.+.|
T Consensus       148 ~HtqDVK~V~WHPt~d--lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~I  221 (312)
T KOG0645|consen  148 EHTQDVKHVIWHPTED--LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVSI  221 (312)
T ss_pred             cccccccEEEEcCCcc--eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceEe
Confidence            9999999999998774  999999999999997763   2357788899999999999999999999986    777999


Q ss_pred             EeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------eEEEEecCCCCCCCceEEEecC
Q 001352          561 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNKN  634 (1093)
Q Consensus       561 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~~  634 (1093)
                      |-..+.     +.+  .|...++.+.|.  ...|++++.|+.|++|.-...-      ++... .+.+...|+++.|+|.
T Consensus       222 w~~~~~-----~~~--~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~  291 (312)
T KOG0645|consen  222 WRLYTD-----LSG--MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPK  291 (312)
T ss_pred             eeeccC-----cch--hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCC
Confidence            985422     222  124788999998  4579999999999999766421      11111 1223347999999994


Q ss_pred             -CCEEEEEECCCeEEEEEcC
Q 001352          635 -GTLLAVIANENRIKILETP  653 (1093)
Q Consensus       635 -~~~l~~~~~dg~i~iw~~~  653 (1093)
                       .++|+++++||.+++|.+.
T Consensus       292 ~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  292 VSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCceeecCCCceEEEEEec
Confidence             7899999999999999864

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=1.3e-31  Score=273.36  Aligned_cols=523  Identities=14%  Similarity=0.198  Sum_probs=374.4

Q ss_pred             EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC--------cEEEEEC
Q 001352          402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------TIKVWDA  473 (1093)
Q Consensus       402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--------~i~vwd~  473 (1093)
                      .+-+-|.|..+....  +.+.+++++...    ...+.+|...|.|++.+||.-  .+++|-.-|        .+++||.
T Consensus        70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~----Qr~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds  141 (626)
T KOG2106|consen   70 NLYLLPTGELVYFVA--AVGVLYNWEERS----QRHYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS  141 (626)
T ss_pred             eeEEccCccEEEEec--cEEEEEeehhhh----cccccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence            355778887766543  345667765522    114669999999999999865  566654433        4999999


Q ss_pred             CCCceeEEeecCCCCeEEeeecccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCC-EEEEEec
Q 001352          474 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGT  550 (1093)
Q Consensus       474 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~  550 (1093)
                      .+-..++.+......|.+++|++...|.++....  .+..+.+||+..+.........+..+....|.|.+. .+++++ 
T Consensus       142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-  220 (626)
T KOG2106|consen  142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-  220 (626)
T ss_pred             ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence            9999999988888899999999888887776653  455689999998877777777777888999999655 455554 


Q ss_pred             CCCCceeEEEEeCCCCeeeee---eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCc
Q 001352          551 SKEGESFLVEWNESEGAIKRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  627 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~~~~~~~---~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  627 (1093)
                          .+.++.|+.+.+.+.++   +..+.  ...|.+++|.++| .+++|..+|.|.||+..+.+..+....|  ...|.
T Consensus       221 ----k~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~eng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~  291 (626)
T KOG2106|consen  221 ----KGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFLENG-DVITGDSGGNILIWSKGTNRISKQVHAH--DGGVF  291 (626)
T ss_pred             ----CceEEEEEccCCceEEEeecccccc--ceEEEEEEEcCCC-CEEeecCCceEEEEeCCCceEEeEeeec--CCceE
Confidence                67799999998876654   44444  3679999999987 4789999999999999888877776644  45699


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001352          628 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  707 (1093)
Q Consensus       628 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~  707 (1093)
                      +++.-.+|.+|- |+.|..|..||-. -+.++...                                             
T Consensus       292 ~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~e---------------------------------------------  324 (626)
T KOG2106|consen  292 SLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETE---------------------------------------------  324 (626)
T ss_pred             EEEEecCccEee-cCccceEEecccc-cccccccc---------------------------------------------
Confidence            999999997665 9999999999922 11111111                                             


Q ss_pred             cccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCC
Q 001352          708 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR  787 (1093)
Q Consensus       708 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1093)
                                           +|+  ..+.|..++-...+  ++.++..+.+..=.++                      
T Consensus       325 ---------------------lPe--~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~----------------------  357 (626)
T KOG2106|consen  325 ---------------------LPE--QFGPIRTVAEGKGD--ILVGTTRNFILQGTLE----------------------  357 (626)
T ss_pred             ---------------------Cch--hcCCeeEEecCCCc--EEEeeccceEEEeeec----------------------
Confidence                                 111  12223322221111  4444444443322111                      


Q ss_pred             CCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001352          788 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD  866 (1093)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d  866 (1093)
                      .+..+..     .+|......++.+|+...+++++ |+.+++|+  ..+...+.. ...++.|++|+| .| .+|.|+..
T Consensus       358 ~~f~~~v-----~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~  427 (626)
T KOG2106|consen  358 NGFTLTV-----QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTAT  427 (626)
T ss_pred             CCceEEE-----EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeecc
Confidence            1111111     14788889999999999999887 79999999  444444433 457889999999 77 99999999


Q ss_pred             CeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEc
Q 001352          867 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH  946 (1093)
Q Consensus       867 g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  946 (1093)
                      |...+.|.++...+..-.. ..++++++|+|+|.+||.|+.|+.|.||.++.+.....+ +....+     .+|+.+.||
T Consensus       428 G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r-~~k~~g-----s~ithLDwS  500 (626)
T KOG2106|consen  428 GRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR-VGKCSG-----SPITHLDWS  500 (626)
T ss_pred             ceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE-eeeecC-----ceeEEeeec
Confidence            9999999998555544443 889999999999999999999999999999876533322 222222     369999999


Q ss_pred             cCCCEEEE-EeCCeEEEEEcCCcceee-----------------eeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001352          947 KDQTRFLL-VHETHLAIYEAEELTCLK-----------------QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1008 (1093)
Q Consensus       947 ~dg~~l~~-~~d~~i~vwd~~~~~~~~-----------------~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~ 1008 (1093)
                      +|++++.+ +.|-.|..|....-..+.                 .....|+..|..++-|.+.+++++|...|.|++|..
T Consensus       501 ~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y  580 (626)
T KOG2106|consen  501 SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY  580 (626)
T ss_pred             CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence            99999999 778889999443221111                 112235677778888889999999999999999998


Q ss_pred             CCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352         1009 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus      1009 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
                      +--+..+.+.     ....|++.|.  +++|.-.| ..|++.+.|.+|..|++
T Consensus       581 Pc~s~rA~~h-----e~~ghs~~vt--~V~Fl~~d-~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  581 PCSSPRAPSH-----EYGGHSSHVT--NVAFLCKD-SHLISTGKDTSIMQWRL  625 (626)
T ss_pred             ccCCCcccce-----eeccccceeE--EEEEeeCC-ceEEecCCCceEEEEEe
Confidence            8765553332     2223566677  45565534 55666669999999986

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.1e-34  Score=287.52  Aligned_cols=280  Identities=19%  Similarity=0.300  Sum_probs=252.6

Q ss_pred             CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEE
Q 001352          335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  414 (1093)
Q Consensus       335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las  414 (1093)
                      ...|++++|+.+|. +||+|+.||.++||+...+ ++.+                   +..|.++|.++.|+.+|.||++
T Consensus       235 nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~-l~~t-------------------l~~HkgPI~slKWnk~G~yilS  293 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGN-LIST-------------------LGQHKGPIFSLKWNKKGTYILS  293 (524)
T ss_pred             cCCcceEEecCCCC-eEEEeecCcEEEEEecCch-hhhh-------------------hhccCCceEEEEEcCCCCEEEe
Confidence            35899999999998 7999999999999997654 4433                   6679999999999999999999


Q ss_pred             EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeee
Q 001352          415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  494 (1093)
Q Consensus       415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~  494 (1093)
                      ++.|+++.+||..+|+...   .+.-|..+-.++.|-.+..   +++++.|+.|+|+.+...+++.++.+|.++|.++.|
T Consensus       294 ~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~  367 (524)
T KOG0273|consen  294 GGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW  367 (524)
T ss_pred             ccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEE
Confidence            9999999999999987544   4556888878899988776   899999999999999999999999999999999999


Q ss_pred             cccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC---------CEEEEEecCCCCceeEEEEeCCC
Q 001352          495 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------RRLFSCGTSKEGESFLVEWNESE  565 (1093)
Q Consensus       495 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~---------~~l~~~~~~~~~~~~i~iwd~~~  565 (1093)
                      .|  .+.+|++++.|+++++|.+........+..|...|..+.|+|.|         ..+++++.    +++|++||+..
T Consensus       368 n~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~  441 (524)
T KOG0273|consen  368 NP--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVES  441 (524)
T ss_pred             CC--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccC
Confidence            55  56799999999999999999888889999999999999999965         46777765    77899999999


Q ss_pred             CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352          566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  645 (1093)
Q Consensus       566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  645 (1093)
                      |.++..|..|.   .+|++++|+|+|.++++|+.||.|.+|+..+++..+.....+   .|..++|+.+|.++..+..|+
T Consensus       442 gv~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~  515 (524)
T KOG0273|consen  442 GVPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDG  515 (524)
T ss_pred             CceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCC
Confidence            99999999888   999999999999999999999999999999999999987654   489999999999999999999


Q ss_pred             eEEEEEcC
Q 001352          646 RIKILETP  653 (1093)
Q Consensus       646 ~i~iw~~~  653 (1093)
                      .+.+.|+.
T Consensus       516 ~vcvldlr  523 (524)
T KOG0273|consen  516 SVCVLDLR  523 (524)
T ss_pred             CceEEEec
Confidence            99998864

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.9e-33  Score=269.08  Aligned_cols=292  Identities=18%  Similarity=0.234  Sum_probs=253.0

Q ss_pred             HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      +..|.||+++|..+.|+|+|. ++|+|+.|..|.+|++.....-.                  ..+++|+++|..+.|.+
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~  100 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMR  100 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeecc
Confidence            345779999999999999998 59999999999999975432211                  12779999999999999


Q ss_pred             CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC
Q 001352          408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  487 (1093)
Q Consensus       408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~  487 (1093)
                      |+..|++++.|.+|+.||+++|+..+   .+++|..-|+++.-+.-|.+ ++.|++.|+++++||+++..+++++. ...
T Consensus       101 d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~ky  175 (338)
T KOG0265|consen  101 DGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKY  175 (338)
T ss_pred             CCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cce
Confidence            99999999999999999999998777   67799999999996666665 78899999999999999999988875 556


Q ss_pred             CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC--
Q 001352          488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--  565 (1093)
Q Consensus       488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--  565 (1093)
                      .++++.|.  ..+..+++|+-|+.|++||++.......+.+|...|+.+..+|+|.++.+.+-    +..+++||.+.  
T Consensus       176 qltAv~f~--d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~  249 (338)
T KOG0265|consen  176 QLTAVGFK--DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFA  249 (338)
T ss_pred             eEEEEEec--ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccC
Confidence            78888884  45568999999999999999999999999999999999999999999998875    77899999874  


Q ss_pred             --Ceeeeeeecccc-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEE
Q 001352          566 --GAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  642 (1093)
Q Consensus       566 --~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  642 (1093)
                        ..++..+.++.. .+.....++|+|++..+-+|+.|..+++||......+..++++.  ..|+++.|+|....+.+++
T Consensus       250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e~iils~~  327 (338)
T KOG0265|consen  250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTEPIILSCS  327 (338)
T ss_pred             CCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCCcEEEEec
Confidence              345777887652 12346778999999999999999999999999989998888764  4699999999999999999


Q ss_pred             CCCeEEEEE
Q 001352          643 NENRIKILE  651 (1093)
Q Consensus       643 ~dg~i~iw~  651 (1093)
                      .|.+|.+=+
T Consensus       328 sdk~i~lge  336 (338)
T KOG0265|consen  328 SDKTIYLGE  336 (338)
T ss_pred             cCceeEeec
Confidence            999998744

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-29  Score=269.63  Aligned_cols=549  Identities=12%  Similarity=0.120  Sum_probs=387.1

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccc-cccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  474 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  474 (1093)
                      -..+|.++|||.+.+.||.+-.+|.|.||++..+-....  .+.++ ...|.+++|++.++   |++.+.+|.|.-||+.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLH   98 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEecc
Confidence            346899999999999999999999999999998754433  45554 45899999996664   9999999999999999


Q ss_pred             CCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE--EecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          475 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       475 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      +++.+..+....+.|++++.++..  ..++.|+.||.+..++........  .+....+++.+++|+|++..++.|+.  
T Consensus        99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--  174 (691)
T KOG2048|consen   99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--  174 (691)
T ss_pred             cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence            999999999999999999997765  589999999977777776655544  33445579999999999999999986  


Q ss_pred             CCceeEEEEeCCCCeeeeeeec----ccc-cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCc
Q 001352          553 EGESFLVEWNESEGAIKRTYQG----LQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  627 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~----~~~-~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  627 (1093)
                        |+.|++||..++..+.....    ... ...-|.++.|-.+ ..|++|...|+|.+||...+.+++.+..+.  ..|.
T Consensus       175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~--adVl  249 (691)
T KOG2048|consen  175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHD--ADVL  249 (691)
T ss_pred             --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhh--ccee
Confidence              77899999999987763221    110 1234778888755 579999999999999999999999988774  4599


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001352          628 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  707 (1093)
Q Consensus       628 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~  707 (1093)
                      +++..+++.++++++.|+.+.-+...+...-                                                 
T Consensus       250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------------------------------------------  280 (691)
T KOG2048|consen  250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------------------------------------------  280 (691)
T ss_pred             EEEEcCCCCeEEEccCCCceEEEEecCCccc-------------------------------------------------
Confidence            9999999999999999999988877654220                                                 


Q ss_pred             cccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCC
Q 001352          708 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR  787 (1093)
Q Consensus       708 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1093)
                            |-.           ..+...|...|.+++..++  .+++++.|..+.+-.....+              ..+- 
T Consensus       281 ------wv~-----------~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~--------------~~~h-  326 (691)
T KOG2048|consen  281 ------WVI-----------NSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFK--------------NMDH-  326 (691)
T ss_pred             ------eee-----------eccccCCcccceeeeeecc--eEEecceeeEEEEccccccC--------------chhh-
Confidence                  100           0011236777888888877  68888888877763322100              0000 


Q ss_pred             CCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCcee---------EEEECCCCCCeEEEEEcCCCCC
Q 001352          788 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNN  858 (1093)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~  858 (1093)
                          .+....    ...  .-+...|..++++.-....+.+|.+.+...         .+-.......|.|.+.|| +|+
T Consensus       327 ----~~~~~~----p~~--~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~  395 (691)
T KOG2048|consen  327 ----RQKNLF----PAS--DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGN  395 (691)
T ss_pred             ----hccccc----ccc--ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCC
Confidence                000000    011  123455666677777778888998866521         222234556899999999 999


Q ss_pred             EEEEEeCCCeEEEEEcCCccee-----eecccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeeeeeeecCCC
Q 001352          859 VIAIGMDDSTILIYNARSSEVI-----SKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDG  932 (1093)
Q Consensus       859 ~lasg~~dg~i~iwd~~~~~~~-----~~l~~h~~~V~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~  932 (1093)
                      ++|.+. -..++||.+...-.+     .......-....+.|+-|++.++.++ .+..+.+.++++...+....++.. +
T Consensus       396 ~Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~  473 (691)
T KOG2048|consen  396 LIAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-A  473 (691)
T ss_pred             EEEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-c
Confidence            999776 345888887652221     11222344577889999998888888 778888888887654432222222 1


Q ss_pred             cccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCC
Q 001352          933 VMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus       933 ~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~-dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
                      ..   ..|..++.||||++||+ +..+.|.+|++++++.-.... .-...|+.++|+| +-..|+.+..++.|.-||++.
T Consensus       474 ~~---~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~  549 (691)
T KOG2048|consen  474 KC---PSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA  549 (691)
T ss_pred             CC---CcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-ccCcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence            11   36999999999999999 789999999999887544321 2247899999995 556788899999999999955


Q ss_pred             CceEEEecccc--ccCCCC--CCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352         1011 LEVQCRILSTA--YLRPTT--SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus      1011 ~~~~~~~~~~~--~~~~~~--~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
                      .++ .++....  .+|..+  .-..+  .-+.|+|. +...+...+.+-+++.|++
T Consensus       550 ~~l-~~ws~~nt~nlpk~~~~l~~~~--~gisfd~~-n~s~~~~~~a~w~~~id~~  601 (691)
T KOG2048|consen  550 RNL-TRWSKNNTRNLPKEPKTLIPGI--PGISFDPK-NSSRFIVYDAHWSCLIDFS  601 (691)
T ss_pred             hhh-hhhhhccccccccChhhcCCCC--ceEEeCCC-CccEEEEEcCcEEEEEecC
Confidence            442 2221111  111110  01112  23556674 3444445556667777764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.7e-33  Score=267.03  Aligned_cols=286  Identities=18%  Similarity=0.295  Sum_probs=248.7

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +.+|++.|..+.|+|+|.+||+|+.|..|.+|++....  .....+++|++.|..+.|.+|+.  .+++++.|++|+.||
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGWD  118 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEEe
Confidence            78999999999999999999999999999999976543  34447889999999999999999  899999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      +++|++++.+++|...|+++... ..+-.++.+++.||++++||++......++.. ..+++++.|..++..+.+++-  
T Consensus       119 ~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggI--  194 (338)
T KOG0265|consen  119 AETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGI--  194 (338)
T ss_pred             cccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccc--
Confidence            99999999999999999999843 23446788999999999999998777666543 347899999999999999987  


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceEEEEecCCCCCC--C
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPE--N  626 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~--v  626 (1093)
                        ++.|.+||++.+....++.||.   ++|+.+..+|+|.++++-+.|.++++||++.    .+++..+..+.+.-.  .
T Consensus       195 --dn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl  269 (338)
T KOG0265|consen  195 --DNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL  269 (338)
T ss_pred             --cCceeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence              5559999999999999999999   9999999999999999999999999999875    344666766544333  3


Q ss_pred             ceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeec
Q 001352          627 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  706 (1093)
Q Consensus       627 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  706 (1093)
                      ..++|+|+++.+..|+.|..+++||......+..+.+|...|+++.|.|                      ....+.+++
T Consensus       270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp----------------------~e~iils~~  327 (338)
T KOG0265|consen  270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP----------------------TEPIILSCS  327 (338)
T ss_pred             ceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC----------------------CCcEEEEec
Confidence            4678999999999999999999999999999999999999999999985                      455567777


Q ss_pred             cccccee
Q 001352          707 AENKSEV  713 (1093)
Q Consensus       707 ~d~~i~~  713 (1093)
                      .|.+|.+
T Consensus       328 sdk~i~l  334 (338)
T KOG0265|consen  328 SDKTIYL  334 (338)
T ss_pred             cCceeEe
Confidence            7776654

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-33  Score=258.85  Aligned_cols=292  Identities=15%  Similarity=0.208  Sum_probs=253.0

Q ss_pred             CchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE
Q 001352          322 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  401 (1093)
Q Consensus       322 ~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  401 (1093)
                      .+|..-.++|..|.+.|.++.|+-||+| ..+++.|.+|++|+...|.++++                   +.+|...|.
T Consensus         4 e~ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVl   63 (307)
T KOG0316|consen    4 ELPTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVL   63 (307)
T ss_pred             cCcchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceee
Confidence            4556667889999999999999999997 77778899999999999999987                   889999999


Q ss_pred             EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC--Ccee
Q 001352          402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--GSRT  479 (1093)
Q Consensus       402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~--~~~~  479 (1093)
                      .++.+.|...+++|+.|..|.+||+++|+.++   .+.+|.+.|+.++|+.+..  .+++|+.|.++++||-++  -+++
T Consensus        64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePi  138 (307)
T KOG0316|consen   64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPI  138 (307)
T ss_pred             eccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCcc
Confidence            99999999999999999999999999998777   7889999999999999998  999999999999999875  4778


Q ss_pred             EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352          480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  559 (1093)
Q Consensus       480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~  559 (1093)
                      +.+......|.++.+    .+..|++|+.||+++.||++.+.....  ..+.+|++++|++|++..++++.    ++.++
T Consensus       139 Qildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sD--y~g~pit~vs~s~d~nc~La~~l----~stlr  208 (307)
T KOG0316|consen  139 QILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSD--YFGHPITSVSFSKDGNCSLASSL----DSTLR  208 (307)
T ss_pred             chhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeehh--hcCCcceeEEecCCCCEEEEeec----cceee
Confidence            889888899999977    346799999999999999998765443  34568999999999999998876    67799


Q ss_pred             EEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEE
Q 001352          560 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  639 (1093)
Q Consensus       560 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  639 (1093)
                      +.|-.+|++++.++||...+..+. ++++.....+++|++||.|++||+.....+..++.+.. ..+..++++|....++
T Consensus       209 LlDk~tGklL~sYkGhkn~eykld-c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~  286 (307)
T KOG0316|consen  209 LLDKETGKLLKSYKGHKNMEYKLD-CCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFI  286 (307)
T ss_pred             ecccchhHHHHHhcccccceeeee-eeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCcccee
Confidence            999999999999999984444443 45666778999999999999999999999999887654 3478999999877777


Q ss_pred             EEECCCeEEEEE
Q 001352          640 VIANENRIKILE  651 (1093)
Q Consensus       640 ~~~~dg~i~iw~  651 (1093)
                      ++.. +.+..|.
T Consensus       287 ~A~~-~~~~~~~  297 (307)
T KOG0316|consen  287 TATG-HGDLFWY  297 (307)
T ss_pred             EecC-Cceecee
Confidence            7765 3455554

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.8e-34  Score=286.87  Aligned_cols=283  Identities=22%  Similarity=0.326  Sum_probs=248.9

Q ss_pred             CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEE
Q 001352          335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  414 (1093)
Q Consensus       335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las  414 (1093)
                      +..|..|.|.|+|++ |++|+..|.+.+|+..+-      +|+             .++..|..+|.++.||++|.++++
T Consensus        96 kc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~f------nFE-------------tilQaHDs~Vr~m~ws~~g~wmiS  155 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSF------NFE-------------TILQAHDSPVRTMKWSHNGTWMIS  155 (464)
T ss_pred             ccceeeEEEcCCCce-eEeecccccEEEecCcee------eHH-------------HHhhhhcccceeEEEccCCCEEEE
Confidence            448999999999997 889999999999997432      221             227789999999999999999999


Q ss_pred             EEcCCEEEEEEccCCCcccceEEecc-ccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEee
Q 001352          415 AYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC  493 (1093)
Q Consensus       415 ~~~d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  493 (1093)
                      |+.+|.|++|+..-.. ++   .+.+ |...|++++|||+..  .++|++.||+|+|||....+.-..+.+|.-.|.++.
T Consensus       156 gD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvd  229 (464)
T KOG0284|consen  156 GDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVD  229 (464)
T ss_pred             cCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceec
Confidence            9999999999987643 22   3344 558999999999888  799999999999999999998889999999999999


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeee
Q 001352          494 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  573 (1093)
Q Consensus       494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~  573 (1093)
                      |+|..  .+|+++++|..|++||.+++.++.++..|...|..+.|+|++++|++++.    |..++++|+++.+.+.+++
T Consensus       230 WHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r  303 (464)
T KOG0284|consen  230 WHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYR  303 (464)
T ss_pred             cCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhh
Confidence            98876  48999999999999999999999999999999999999999999999986    6679999999999999999


Q ss_pred             cccccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352          574 GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  652 (1093)
Q Consensus       574 ~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  652 (1093)
                      +|.   ..+.++.|+|-.. .+.+|+.||.|..|.+...+++..+.. .+...|.+++|+|-|..|++|+.|.++++|..
T Consensus       304 ~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  304 GHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             cch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeecc
Confidence            998   8999999999765 455699999999999986666666543 33457999999999999999999999999986


Q ss_pred             C
Q 001352          653 P  653 (1093)
Q Consensus       653 ~  653 (1093)
                      .
T Consensus       380 ~  380 (464)
T KOG0284|consen  380 N  380 (464)
T ss_pred             C
Confidence            5

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-33  Score=274.54  Aligned_cols=285  Identities=20%  Similarity=0.286  Sum_probs=263.6

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +.+|..+|+.+-|+|+-...++++.|++|++||..+|+..+   .++||.+.|.+++|+..|+  ++++++.|-.+++||
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD  178 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence            67899999999999999999999999999999999998755   7889999999999999999  899999999999999


Q ss_pred             CCC-CceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001352          473 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  551 (1093)
Q Consensus       473 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~  551 (1093)
                      .++ -++++.+.+|...|.+++|.|.+  .++++++.|.+|+.|+++++-++.++.+|...|..+..+.||..+++++. 
T Consensus       179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~-  255 (406)
T KOG0295|consen  179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN-  255 (406)
T ss_pred             HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence            887 67888899999999999998765  69999999999999999999999999999999999999999999999986 


Q ss_pred             CCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCceEEE
Q 001352          552 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT  616 (1093)
Q Consensus       552 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~  616 (1093)
                         +..|++|-..++++...+..|+   .+|.+++|.|.               ++++.+++.|++|++||+.++.++.+
T Consensus       256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t  329 (406)
T KOG0295|consen  256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT  329 (406)
T ss_pred             ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence               6779999999999999999988   89999999763               25888999999999999999999999


Q ss_pred             EecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCC
Q 001352          617 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK  696 (1093)
Q Consensus       617 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s  696 (1093)
                      +.+|.  ..|..++|+|.|++|+++.+|+++++||+.+.++...+..|..-++++.|.                      
T Consensus       330 L~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh----------------------  385 (406)
T KOG0295|consen  330 LVGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH----------------------  385 (406)
T ss_pred             Eeccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC----------------------
Confidence            98775  469999999999999999999999999999999999999999999988886                      


Q ss_pred             CCCccceeecccccceecc
Q 001352          697 EDVKPEISVEAENKSEVEK  715 (1093)
Q Consensus       697 ~d~~~l~s~~~d~~i~~w~  715 (1093)
                      .+..++++|+-|.++++|.
T Consensus       386 ~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  386 KTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             CCCceEEeccccceeeeee
Confidence            3445889999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.5e-32  Score=311.16  Aligned_cols=294  Identities=21%  Similarity=0.352  Sum_probs=255.5

Q ss_pred             HHhhccC-CCCceeeeecCCCceEEEEEccCCcEEEEecCCCc--eeEEeeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352          328 AQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  404 (1093)
Q Consensus       328 ~~~l~~h-~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  404 (1093)
                      .+++.+| ...|.|+.|||||++ +++++.|+.+++|+..+++  .+..                   +.+|...|..++
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~  210 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA  210 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence            4455554 779999999999996 9999999999999997776  4432                   578999999999


Q ss_pred             ECCCCCEEEEEEcCCEEEEEEcc-CCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEee
Q 001352          405 WSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  483 (1093)
Q Consensus       405 ~s~dg~~las~~~d~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  483 (1093)
                      |+|||+++++++.|++|+|||+. .+..++   ++.+|...|++++|+|+|+  ++++|+.|++|+|||+.+++++..+.
T Consensus       211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~  285 (456)
T KOG0266|consen  211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK  285 (456)
T ss_pred             ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence            99999999999999999999994 434444   7889999999999999997  89999999999999999999999999


Q ss_pred             cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCC--ceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352          484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLV  559 (1093)
Q Consensus       484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~--~v~~~~~s~d~~~l~~~~~~~~~~~~i~  559 (1093)
                      +|...|.+++|  .+++.+|++++.||.|++||+.++.  ....+..+..  .++++.|+|++.++++++.    ++.+.
T Consensus       286 ~hs~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~  359 (456)
T KOG0266|consen  286 GHSDGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK  359 (456)
T ss_pred             ccCCceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence            99999999999  5577899999999999999999988  3445544443  5999999999999999986    66799


Q ss_pred             EEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEE
Q 001352          560 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  639 (1093)
Q Consensus       560 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  639 (1093)
                      +||+..+.....+.+|......+.+...++.+.++++|+.|+.|++||..++..+..+..+. ...+..++++|..++++
T Consensus       360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~  438 (456)
T KOG0266|consen  360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA  438 (456)
T ss_pred             EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence            99999999999999988321245556668889999999999999999999999998888775 45688999999999999


Q ss_pred             EEE--CCCeEEEEEcC
Q 001352          640 VIA--NENRIKILETP  653 (1093)
Q Consensus       640 ~~~--~dg~i~iw~~~  653 (1093)
                      +++  .|+.+++|...
T Consensus       439 s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  439 SSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ecCcCCCceEEEecCC
Confidence            998  68999999764

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.7e-33  Score=276.70  Aligned_cols=292  Identities=16%  Similarity=0.177  Sum_probs=250.5

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +..|.+.|..+.||++|+|||+++.|.+..+|++.....++...++.+|..+|..+.||||.+  +|++|+.|..+.+||
T Consensus       220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lwD  297 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLWD  297 (519)
T ss_pred             HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeecc
Confidence            778999999999999999999999999999999987776777778999999999999999999  899999999999999


Q ss_pred             CCCCceeEEee-cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001352          473 AVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  551 (1093)
Q Consensus       473 ~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~  551 (1093)
                      +.+|.+.+.+. +|...+.+++|.|  ||..+++|+.|+.+..||++......--......|.+++.++||+++++... 
T Consensus       298 v~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~-  374 (519)
T KOG0293|consen  298 VDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV-  374 (519)
T ss_pred             CCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec-
Confidence            99999988774 3567889999954  7788999999999999998764422222223356899999999999998876 


Q ss_pred             CCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEE
Q 001352          552 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  631 (1093)
Q Consensus       552 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  631 (1093)
                         +..|++++..+.........+    .+|++.+++.+++++++.-.+..+.+||++..+.+..+.++.....+..-||
T Consensus       375 ---d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF  447 (519)
T KOG0293|consen  375 ---DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF  447 (519)
T ss_pred             ---ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence               666999998877665544443    5899999999999999999999999999998888888777655444555566


Q ss_pred             ec-CCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccc
Q 001352          632 NK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  710 (1093)
Q Consensus       632 s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~  710 (1093)
                      .. +..++++|+.|+.|+||+..+++++..+.||...+++++++|                     .+..++|+++.||+
T Consensus       448 gg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP---------------------~~p~m~ASasDDgt  506 (519)
T KOG0293|consen  448 GGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP---------------------ADPEMFASASDDGT  506 (519)
T ss_pred             CCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC---------------------CCHHHhhccCCCCe
Confidence            54 568999999999999999999999999999999999999996                     45677999999999


Q ss_pred             ceeccee
Q 001352          711 SEVEKPL  717 (1093)
Q Consensus       711 i~~w~~~  717 (1093)
                      ||+|-..
T Consensus       507 IRIWg~~  513 (519)
T KOG0293|consen  507 IRIWGPS  513 (519)
T ss_pred             EEEecCC
Confidence            9999864

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=7.7e-34  Score=289.21  Aligned_cols=296  Identities=16%  Similarity=0.253  Sum_probs=254.1

Q ss_pred             CchHHHHHhhccCCCCceeeeecC-CCceEEEEEccCCcEEEEecCC-CceeEEeeeeeeecccccceeeeeeecCCCCC
Q 001352          322 DFPKTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVS  399 (1093)
Q Consensus       322 ~~p~~~~~~l~~h~~~V~~~~~sp-dg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  399 (1093)
                      -+|+..+.++.||+..|+++.|.| .+ .||++|+.|+.|+||++-. ++++++                   +.||..+
T Consensus       201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~-hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~  260 (503)
T KOG0282|consen  201 YLPKKLSHNLSGHTKGVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKP  260 (503)
T ss_pred             eccHhheeeccCCccccchhhhcccee-eEEEecCCCceEEEEEEecCcceehh-------------------hhcchhh
Confidence            357899999999999999999999 66 4899999999999999977 777766                   7799999


Q ss_pred             eEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352          400 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  479 (1093)
Q Consensus       400 V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  479 (1093)
                      |..++|+++|..+.+++.|+.|++||+++|+++..   +. ....++|+.|.||+.+ .+++|+.|+.|+.||+++++.+
T Consensus       261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvv  335 (503)
T KOG0282|consen  261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVV  335 (503)
T ss_pred             hhhhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHH
Confidence            99999999999999999999999999999987653   22 3446899999999955 7888999999999999999999


Q ss_pred             EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352          480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  558 (1093)
Q Consensus       480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i  558 (1093)
                      +++..|-+.|..+.|.  +++..+++.+.|+++++|+.+....... .........++..+|++.++++-+.    ++.|
T Consensus       336 qeYd~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i  409 (503)
T KOG0282|consen  336 QEYDRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYI  409 (503)
T ss_pred             HHHHhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceE
Confidence            9999999999999995  4678999999999999999987665543 3334456788999999999998765    6778


Q ss_pred             EEEeCCCC---eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec-C
Q 001352          559 VEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-N  634 (1093)
Q Consensus       559 ~iwd~~~~---~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~  634 (1093)
                      .++.+...   ...+.+.||... +.-..+.|||||.+|++|+.||.+.+||.++-+++..+..+.  ..+..+.|+| .
T Consensus       410 ~ifs~~~~~r~nkkK~feGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e  486 (503)
T KOG0282|consen  410 AIFSTVPPFRLNKKKRFEGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVE  486 (503)
T ss_pred             EEEecccccccCHhhhhcceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCC
Confidence            88876532   345667787632 445678999999999999999999999999999999998773  4588999999 4


Q ss_pred             CCEEEEEECCCeEEEEE
Q 001352          635 GTLLAVIANENRIKILE  651 (1093)
Q Consensus       635 ~~~l~~~~~dg~i~iw~  651 (1093)
                      ...+|+++.+|.|++|+
T Consensus       487 ~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  487 PSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cceeEecccCceeEecC
Confidence            66899999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=4.2e-32  Score=265.03  Aligned_cols=292  Identities=14%  Similarity=0.233  Sum_probs=256.7

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +.+|.+.|.|+++-|-.+++++|+.|++|+|||+.+|+...   ++.||-..|..+++|+-..  ++++++.|+.|+.||
T Consensus       147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCWD  221 (460)
T ss_pred             hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEEe
Confidence            77899999999999999999999999999999999997544   7889999999999999877  899999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      ++..+.++.+.||-..|++++.+|.-  ..|++|+.|.++++||+++...+..+.+|..+|..+.+.|-.-.+++|+.  
T Consensus       222 Le~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~--  297 (460)
T KOG0285|consen  222 LEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH--  297 (460)
T ss_pred             chhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC--
Confidence            99999999999999999999998866  48999999999999999999999999999999999999998889999986  


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  632 (1093)
                        |..|++||+..|+...++..|.   ..+.+++.+|....+++++.|. |+-|++..|..+..+..+.  ..+++++.+
T Consensus       298 --D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~--~iintl~~n  369 (460)
T KOG0285|consen  298 --DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHN--AIINTLSVN  369 (460)
T ss_pred             --CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccccc--ceeeeeeec
Confidence              7789999999999999988887   8999999999988888888775 8999999999998877664  458889888


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccce
Q 001352          633 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  712 (1093)
Q Consensus       633 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  712 (1093)
                      .|| ++++|+++|.+..||.+++..++.......+                                     |+      
T Consensus       370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-------------------------------------GS------  405 (460)
T KOG0285|consen  370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-------------------------------------GS------  405 (460)
T ss_pred             cCc-eEEEcCCceEEEEEecCcCcccccccccccC-------------------------------------Cc------
Confidence            876 7889999999999999988655544311000                                     00      


Q ss_pred             ecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeee
Q 001352          713 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  764 (1093)
Q Consensus       713 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~  764 (1093)
                                         ......|.+.+|...|.+|+++..|.+|++|.-
T Consensus       406 -------------------l~sEagI~as~fDktg~rlit~eadKtIk~~ke  438 (460)
T KOG0285|consen  406 -------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKE  438 (460)
T ss_pred             -------------------cccccceeEEeecccCceEEeccCCcceEEEec
Confidence                               013456888899999999999999999999974

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-28  Score=261.18  Aligned_cols=547  Identities=16%  Similarity=0.159  Sum_probs=376.7

Q ss_pred             CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeec-CCCCCeEEEEECCCCCEEE
Q 001352          335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNRVVWSPDGSLLG  413 (1093)
Q Consensus       335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s~dg~~la  413 (1093)
                      ..+|.++|||.+.+. ||.+-.+|.|.||++..+=...                  .++. +....|.+++|+ +|.+|.
T Consensus        25 Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~~RLF   84 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EGGRLF   84 (691)
T ss_pred             ccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cCCeEE
Confidence            349999999999985 8999999999999998753322                  1233 345789999999 566778


Q ss_pred             EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE--EeecCCCCeEE
Q 001352          414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--SFEGHGAPVYS  491 (1093)
Q Consensus       414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~--~~~~h~~~v~~  491 (1093)
                      +.+.+|.|.-||+.+++...   .+....+.|++++.+|.+.  .++.|+.||.+...+...++..+  .|....+.|.+
T Consensus        85 S~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs  159 (691)
T KOG2048|consen   85 SSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS  159 (691)
T ss_pred             eecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence            88899999999999987555   6667888999999999998  78999999988888888877654  34456688999


Q ss_pred             eeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--------CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001352          492 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  563 (1093)
Q Consensus       492 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~  563 (1093)
                      +.|.  +++..+++|+.||.|++||...+........        ...-|.++.|-.++ .+++|    |..|.|..||.
T Consensus       160 lsw~--~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg----DS~G~V~FWd~  232 (691)
T KOG2048|consen  160 LSWN--PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG----DSAGTVTFWDS  232 (691)
T ss_pred             EEec--CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe----cCCceEEEEcc
Confidence            9985  4667899999999999999998887662211        12236777777555 45555    34788999999


Q ss_pred             CCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEecCCCCCCCceEEEecCCCEEEEE
Q 001352          564 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLAVI  641 (1093)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~  641 (1093)
                      ..|.+++.+..|.   ..|.+++..++++++++++.|+.|.-+...+++.  +.......+...+.+++..++  .+++|
T Consensus       233 ~~gTLiqS~~~h~---adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sg  307 (691)
T KOG2048|consen  233 IFGTLIQSHSCHD---ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISG  307 (691)
T ss_pred             cCcchhhhhhhhh---cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEec
Confidence            9999999998888   9999999999999999999999999998876643  222222233346899998877  89999


Q ss_pred             ECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccC
Q 001352          642 ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP  721 (1093)
Q Consensus       642 ~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~  721 (1093)
                      +.|..+.+-.......    ..|...    ...|......              ....+++..-..+..+.+|.+.....
T Consensus       308 G~d~~l~i~~s~~~~~----~~h~~~----~~~p~~~~v~--------------~a~~~~L~~~w~~h~v~lwrlGS~~~  365 (691)
T KOG2048|consen  308 GRDFTLAICSSREFKN----MDHRQK----NLFPASDRVS--------------VAPENRLLVLWKAHGVDLWRLGSVIL  365 (691)
T ss_pred             ceeeEEEEccccccCc----hhhhcc----ccccccceee--------------cCccceEEEEeccccccceeccCccc
Confidence            9999888765543111    111100    0011111110              11123333444456667777654422


Q ss_pred             c------cccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeec
Q 001352          722 S------ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVN  795 (1093)
Q Consensus       722 ~------~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (1093)
                      .      ....+..   .....|.+.++||+|++++.+.- ...++|.++....           +++-.+.        
T Consensus       366 ~g~~~~~~Llkl~~---k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~-----------vk~~~v~--------  422 (691)
T KOG2048|consen  366 QGEYNYIHLLKLFT---KEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPN-----------VKVINVD--------  422 (691)
T ss_pred             ccccChhhheeeec---CCccceeeeccCCCCCEEEEeec-cceEEEEeccCcc-----------eeEEEec--------
Confidence            1      1112222   24567999999999997666554 4677887765321           0110000        


Q ss_pred             cCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEccCce--eEEEEC--CCCCCeEEEEEcCCCCCEEEEEeCCCeE
Q 001352          796 DTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK--TILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTI  869 (1093)
Q Consensus       796 ~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~--~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~i  869 (1093)
                      +.+  ........+.|+-|+..++.++  ...+.+++.++..  .+..+.  +....|+.++.|| +|++||+.+.+|.|
T Consensus       423 ~~~--~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t~g~I  499 (691)
T KOG2048|consen  423 DVP--LALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAISTRGQI  499 (691)
T ss_pred             cch--hhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEeccceE
Confidence            011  1334567788998888887776  3778888876543  333332  2456899999999 99999999999999


Q ss_pred             EEEEcCCcceeeecccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeee---cCCCcccCCCCceEEEE
Q 001352          870 LIYNARSSEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ---TPDGVMTLAPSETHIQF  945 (1093)
Q Consensus       870 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~  945 (1093)
                      .+|++++++.......-...|++++|+| +.+.|+.+..++++.-+|++...........   .+.........+..+.|
T Consensus       500 ~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisf  579 (691)
T KOG2048|consen  500 FVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISF  579 (691)
T ss_pred             EEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEe
Confidence            9999998775544434457899999995 6688999999999999999543322111111   11111111246888899


Q ss_pred             ccCCCEEEEEe-CCeEEEEEcC
Q 001352          946 HKDQTRFLLVH-ETHLAIYEAE  966 (1093)
Q Consensus       946 s~dg~~l~~~~-d~~i~vwd~~  966 (1093)
                      +|.....+... .+-+.+.|..
T Consensus       580 d~~n~s~~~~~~a~w~~~id~~  601 (691)
T KOG2048|consen  580 DPKNSSRFIVYDAHWSCLIDFS  601 (691)
T ss_pred             CCCCccEEEEEcCcEEEEEecC
Confidence            88777666543 3456666543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.2e-32  Score=294.15  Aligned_cols=247  Identities=18%  Similarity=0.334  Sum_probs=227.5

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCc----------------------------ccceEEeccccccEEE
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD----------------------------ARQQLEIDAHVGNVND  447 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~----------------------------~~~~~~~~~h~~~v~~  447 (1093)
                      -...++|..||+|++.||.|..|..|++|.+...+.                            -....++.||.++|..
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg  456 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG  456 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence            446799999999999999999999999999874210                            0113357899999999


Q ss_pred             EEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001352          448 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD  527 (1093)
Q Consensus       448 ~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  527 (1093)
                      +.|+|+.+  +|++++.|+++|+|.+.+..++-.++||..||+.+.|+|  .|-++++++.|++-++|..+...+...+.
T Consensus       457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRifa  532 (707)
T KOG0263|consen  457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRIFA  532 (707)
T ss_pred             eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhhhc
Confidence            99999999  899999999999999999999999999999999999964  67999999999999999999999999999


Q ss_pred             CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001352          528 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD  607 (1093)
Q Consensus       528 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd  607 (1093)
                      +|-..|.|+.|+|+..++++|+.    |.++++||+.+|..++.|.||.   ++|.+++|+|+|.+|++|++||.|.+||
T Consensus       533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~---~~V~al~~Sp~Gr~LaSg~ed~~I~iWD  605 (707)
T KOG0263|consen  533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHK---GPVTALAFSPCGRYLASGDEDGLIKIWD  605 (707)
T ss_pred             ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCC---CceEEEEEcCCCceEeecccCCcEEEEE
Confidence            99999999999999999999976    7789999999999999999988   9999999999999999999999999999


Q ss_pred             CCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352          608 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      +.+++++..+..|  ...|.++.|+.+|..||+++.|++|++||+...
T Consensus       606 l~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  606 LANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             cCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            9999999999877  456999999999999999999999999998744

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4.5e-33  Score=270.32  Aligned_cols=276  Identities=21%  Similarity=0.310  Sum_probs=235.1

Q ss_pred             CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352          334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  413 (1093)
Q Consensus       334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la  413 (1093)
                      ..+.|.|+.+..+   .+++|..|++|+|||.++..++..                   +.||++.|.|+.|  |.+.|+
T Consensus       196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqy--d~rvii  251 (499)
T KOG0281|consen  196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQY--DERVIV  251 (499)
T ss_pred             cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeec--cceEEE
Confidence            4558999999654   389999999999999999888765                   8899999999998  567999


Q ss_pred             EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce---eEEeecCCCCeE
Q 001352          414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVY  490 (1093)
Q Consensus       414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~h~~~v~  490 (1093)
                      +|+.|.+|+|||+++|+++.   ++-+|...|..+.|+..    +++|++.|.+|.|||+.+...   .+.+.||...|+
T Consensus       252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN  324 (499)
T KOG0281|consen  252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  324 (499)
T ss_pred             ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence            99999999999999999887   66789999999999863    799999999999999987653   356789999999


Q ss_pred             EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352          491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  570 (1093)
Q Consensus       491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~  570 (1093)
                      .+.|    +.+++++++.|.+|++|++.+.+.+.++.+|...|.|+.+  .|+++++|+.    +.+|++||+..|.+++
T Consensus       325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR  394 (499)
T KOG0281|consen  325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR  394 (499)
T ss_pred             eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence            9988    4469999999999999999999999999999999887775  6788888876    7789999999999999


Q ss_pred             eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-------ecCCCCCCCceEEEecCCCEEEEEEC
Q 001352          571 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-------DAGGGLPENPRICFNKNGTLLAVIAN  643 (1093)
Q Consensus       571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~~~~~  643 (1093)
                      .++||+   .-|.++.|.  .+.+++|+.||+|+|||+.++..-...       ..-.+.+.|..+.|  |...+++.+.
T Consensus       395 vLeGHE---eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssH  467 (499)
T KOG0281|consen  395 VLEGHE---ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSH  467 (499)
T ss_pred             HHhchH---Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccC
Confidence            999999   889999995  578999999999999999876533211       11123345666666  4678999999


Q ss_pred             CCeEEEEEcCCCce
Q 001352          644 ENRIKILETPESNS  657 (1093)
Q Consensus       644 dg~i~iw~~~~~~~  657 (1093)
                      |.+|.|||..++..
T Consensus       468 ddtILiWdFl~~~~  481 (499)
T KOG0281|consen  468 DDTILIWDFLNGPP  481 (499)
T ss_pred             CCeEEEEEcCCCCc
Confidence            99999999987643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.5e-30  Score=283.32  Aligned_cols=287  Identities=25%  Similarity=0.412  Sum_probs=254.6

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      +++.+|.+.|++++|+|+++ ++++|+.||.|.+|++.+++....                   +..|...+..+.|+|+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~   62 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASAD   62 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCC
Confidence            56789999999999999998 588888999999999998875543                   5578899999999999


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  488 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  488 (1093)
                      +++|++++.++.|++||+.+++.+.   .+..|...|.++.|+++++  ++++++.|+.|++||+.+++....+..|...
T Consensus        63 ~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  137 (289)
T cd00200          63 GTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDW  137 (289)
T ss_pred             CCEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence            9999999999999999999875444   5678999999999999977  7888888999999999999999999999999


Q ss_pred             eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001352          489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  568 (1093)
Q Consensus       489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~  568 (1093)
                      +.++++++.  +.++++++.||.|++||++..+....+..+...+.++.|+|+++.+++++.    ++.|.+||..+++.
T Consensus       138 i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~  211 (289)
T cd00200         138 VNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKC  211 (289)
T ss_pred             EEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCce
Confidence            999999664  568888888999999999988888888888889999999999999998875    56799999999988


Q ss_pred             eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352          569 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  648 (1093)
Q Consensus       569 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  648 (1093)
                      +..+..+.   ..+.++.|+|++.++++++.+|.|++||+.+++....+..+  ...+.+++|+|+++++++++.||.++
T Consensus       212 ~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~  286 (289)
T cd00200         212 LGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIR  286 (289)
T ss_pred             ecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEE
Confidence            88887766   78999999999888888888999999999998888888744  34689999999999999999999999


Q ss_pred             EEE
Q 001352          649 ILE  651 (1093)
Q Consensus       649 iw~  651 (1093)
                      +|+
T Consensus       287 iw~  289 (289)
T cd00200         287 IWD  289 (289)
T ss_pred             ecC
Confidence            996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.9e-30  Score=243.68  Aligned_cols=292  Identities=16%  Similarity=0.226  Sum_probs=235.6

Q ss_pred             ccccceEEEEeecC-CceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEE
Q 001352          733 VKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  811 (1093)
Q Consensus       733 ~~~~~i~~l~~s~~-g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  811 (1093)
                      +|.+++..++|+|. |..|++++.|..+++|+.....              -|.       ....+. .+|...|+.++|
T Consensus        12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~~-------ck~vld-~~hkrsVRsvAw   69 (312)
T KOG0645|consen   12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SWT-------CKTVLD-DGHKRSVRSVAW   69 (312)
T ss_pred             CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cEE-------EEEecc-ccchheeeeeee
Confidence            47889999999999 8899999999999999865210              011       111111 259999999999


Q ss_pred             ccCCCEEEEEe-CCeEEEEEccC--ceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---ceeeeccc
Q 001352          812 SKNDAYLFSAS-GGVISLYIVMT--FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEG  885 (1093)
Q Consensus       812 s~dg~~la~~~-dg~i~iwd~~~--~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~---~~~~~l~~  885 (1093)
                      +|.|++||+++ |.++.||.-..  .+++..+.+|..+|.|++|++ +|.+||+++.|++|.||.+..+   ++...+++
T Consensus        70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~  148 (312)
T KOG0645|consen   70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE  148 (312)
T ss_pred             cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence            99999999999 99999998764  478889999999999999999 9999999999999999999854   57789999


Q ss_pred             ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEE
Q 001352          886 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE  964 (1093)
Q Consensus       886 h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd  964 (1093)
                      |...|..+.|+|...+|+|+|.|.+|++|+-..+  ....+.+.+.+|..   .|.+++|++.|..|++ +.|++++||.
T Consensus       149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             ccccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeee
Confidence            9999999999999999999999999999988731  12557788888875   7999999999999888 5788999999


Q ss_pred             cCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCC
Q 001352          965 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1044 (1093)
Q Consensus       965 ~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1044 (1093)
                      .-+     .+..-|++.+..+.|.  ...|++++.|+.|+++.-...-.-..+... ....+.|...|.  ++.|.|...
T Consensus       224 ~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVN--sV~w~p~~~  293 (312)
T KOG0645|consen  224 LYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVN--SVQWNPKVS  293 (312)
T ss_pred             ecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHH-Hhhhcccccccc--eEEEcCCCC
Confidence            652     2334478899999998  447999999999999987753222222211 122233555566  678999557


Q ss_pred             CEEEEEeCCCcEEEEecC
Q 001352         1045 TQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus      1045 ~~l~~~~~dg~v~~w~~~ 1062 (1093)
                      ++|++|++||.|.+|.+.
T Consensus       294 ~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  294 NRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CceeecCCCceEEEEEec
Confidence            899999999999999874

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.3e-32  Score=270.06  Aligned_cols=283  Identities=16%  Similarity=0.212  Sum_probs=245.8

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  475 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  475 (1093)
                      -+.+|..|.|.|+|++|++|+..|.+.+|+..+-.   -...+..|..+|+++.|+++|.  +++||+.+|.|++|+..-
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn---FEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnm  169 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN---FETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNM  169 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceee---HHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccch
Confidence            34689999999999999999999999999975422   1113568999999999999999  899999999999999554


Q ss_pred             CceeEEeecC-CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001352          476 GSRTYSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  554 (1093)
Q Consensus       476 ~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~  554 (1093)
                      .. ++.+.+| ...|++++|+|  +...+++++.||+|+|||....++...+.+|+-.|.++.|+|....+++++.    
T Consensus       170 nn-Vk~~~ahh~eaIRdlafSp--nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk----  242 (464)
T KOG0284|consen  170 NN-VKIIQAHHAEAIRDLAFSP--NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK----  242 (464)
T ss_pred             hh-hHHhhHhhhhhhheeccCC--CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----
Confidence            44 4445454 49999999977  4468999999999999999999998999999999999999999999999986    


Q ss_pred             ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec-
Q 001352          555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-  633 (1093)
Q Consensus       555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-  633 (1093)
                      +..|.+||.++|.++.++.+|.   ..|..+.|+|++++|+++|.|..++++|+++.+.+.++..|.  ..+.++.|+| 
T Consensus       243 DnlVKlWDprSg~cl~tlh~HK---ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk--kdv~~~~WhP~  317 (464)
T KOG0284|consen  243 DNLVKLWDPRSGSCLATLHGHK---NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK--KDVTSLTWHPL  317 (464)
T ss_pred             CceeEeecCCCcchhhhhhhcc---ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch--hhheeeccccc
Confidence            5589999999999999999998   999999999999999999999999999999888888887664  4699999999 


Q ss_pred             CCCEEEEEECCCeEEEEEcCCCceee-ecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccce
Q 001352          634 NGTLLAVIANENRIKILETPESNSVD-AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  712 (1093)
Q Consensus       634 ~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  712 (1093)
                      ...+|.+|+.||.|..|.+....++. .-.+|...|++++++                      |-|..|++|+.|.+++
T Consensus       318 ~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~h----------------------PlGhil~tgsnd~t~r  375 (464)
T KOG0284|consen  318 NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYH----------------------PLGHILATGSNDRTVR  375 (464)
T ss_pred             cccceeeccCCCceEEEeccccccccCCCcccccceeeeecc----------------------ccceeEeecCCCccee
Confidence            67789999999999999999554444 445788899999997                      5677888999999999


Q ss_pred             eccee
Q 001352          713 VEKPL  717 (1093)
Q Consensus       713 ~w~~~  717 (1093)
                      +|...
T Consensus       376 fw~r~  380 (464)
T KOG0284|consen  376 FWTRN  380 (464)
T ss_pred             eeccC
Confidence            99854

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=2.8e-30  Score=292.68  Aligned_cols=291  Identities=21%  Similarity=0.304  Sum_probs=254.1

Q ss_pred             CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEEC-
Q 001352          395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-  473 (1093)
Q Consensus       395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~-  473 (1093)
                      .|...|.++.|++||+++++++.++.+++|+..+++. .....+.+|...|.+++|+||++  ++++++.|++|+|||+ 
T Consensus       157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence            3588999999999999999999999999999977662 12225679999999999999999  8999999999999999 


Q ss_pred             CCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001352          474 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  553 (1093)
Q Consensus       474 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~  553 (1093)
                      ..+..++++.+|...|++++|++  +++++++|+.|++|++||+++++....+..|...|.+++|+++++++++++.   
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---  308 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---  308 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence            56689999999999999999966  4489999999999999999999999999999999999999999999999965   


Q ss_pred             CceeEEEEeCCCCe--eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCC-CCCceEE
Q 001352          554 GESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRIC  630 (1093)
Q Consensus       554 ~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~  630 (1093)
                       ++.|++||+.++.  +...+.++.... ++.++.|+|++.++++++.|+.+++||+..+........+... ..+.+..
T Consensus       309 -d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  309 -DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT  386 (456)
T ss_pred             -CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence             7789999999999  567888877333 7999999999999999999999999999999999888877553 1334455


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCCceeeecccc-cccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeec--c
Q 001352          631 FNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--A  707 (1093)
Q Consensus       631 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~  707 (1093)
                      .++.+.++++|+.|+.|.+|+..++..+..+.+| ...+..+.++                      +...++++++  .
T Consensus       387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~----------------------~~~~~~~s~s~~~  444 (456)
T KOG0266|consen  387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH----------------------PTENLIASSSFEG  444 (456)
T ss_pred             ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccC----------------------CCcCeeeecCcCC
Confidence            6789999999999999999999999999999998 6767666665                      5566677776  6


Q ss_pred             cccceeccee
Q 001352          708 ENKSEVEKPL  717 (1093)
Q Consensus       708 d~~i~~w~~~  717 (1093)
                      |+.+++|...
T Consensus       445 d~~~~~w~~~  454 (456)
T KOG0266|consen  445 DGLIRLWKYD  454 (456)
T ss_pred             CceEEEecCC
Confidence            8889999753

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.98  E-value=1e-31  Score=273.80  Aligned_cols=290  Identities=15%  Similarity=0.189  Sum_probs=253.4

Q ss_pred             eecCCCCCeEEEEECC-CCCEEEEEEcCCEEEEEEccC-CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352          392 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  469 (1093)
Q Consensus       392 ~~~~h~~~V~~v~~s~-dg~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  469 (1093)
                      .+.||...|+++.|.| .+.+|++++.|+.|+||++.. +++++   ++.+|..+|.+++|+++|.  .++|++.|+.|+
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK  283 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK  283 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence            3789999999999999 899999999999999999987 66666   7889999999999999999  799999999999


Q ss_pred             EEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001352          470 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  549 (1093)
Q Consensus       470 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~  549 (1093)
                      +||+++|+++..+. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.+
T Consensus       284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS  361 (503)
T KOG0282|consen  284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS  361 (503)
T ss_pred             eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence            99999999999986 55678899998875 47999999999999999999999999999999999999999999999988


Q ss_pred             cCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---EEEEecCCCCCCC
Q 001352          550 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL---LTTIDAGGGLPEN  626 (1093)
Q Consensus       550 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v  626 (1093)
                      .    +..+++|+...+-.++......  .....++..+|+++++++-+.|+.|.++.+...-.   ...+.+|.-.+.-
T Consensus       362 D----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys  435 (503)
T KOG0282|consen  362 D----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS  435 (503)
T ss_pred             c----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence            6    5679999999887776665544  24577899999999999999999999998654322   2344444333345


Q ss_pred             ceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeec
Q 001352          627 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  706 (1093)
Q Consensus       627 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  706 (1093)
                      ..+.|||||++|++|..||.+.+||.++.+.+..++.|...+..+.|.|..                     ...+++++
T Consensus       436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e---------------------~Skvat~~  494 (503)
T KOG0282|consen  436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE---------------------PSKVATCG  494 (503)
T ss_pred             eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC---------------------cceeEecc
Confidence            678999999999999999999999999999999999999999999999744                     45589999


Q ss_pred             ccccceecc
Q 001352          707 AENKSEVEK  715 (1093)
Q Consensus       707 ~d~~i~~w~  715 (1093)
                      .+|.|++|+
T Consensus       495 w~G~Ikiwd  503 (503)
T KOG0282|consen  495 WDGLIKIWD  503 (503)
T ss_pred             cCceeEecC
Confidence            999999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=3.6e-31  Score=246.01  Aligned_cols=290  Identities=17%  Similarity=0.230  Sum_probs=255.0

Q ss_pred             hhccCCCCceeeeecC---CCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          330 TLIEGSSSPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       330 ~l~~h~~~V~~~~~sp---dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      +-.||+.+|..++|||   +| |+|++++.||.-.+-+-+||.-+.+                   +.||.+.|.+...+
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l~   68 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATLN   68 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeecC
Confidence            4468999999999985   77 6899999999999999999998876                   77999999999999


Q ss_pred             CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc-eeEEeecC
Q 001352          407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGH  485 (1093)
Q Consensus       407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~h  485 (1093)
                      .+-.+-|+++.|-+.+|||.-+|..+.   ++ .|...|.+++|+.|.+  +|+||+.++.+||+|++..+ +...+.+|
T Consensus        69 ~na~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~gh  142 (334)
T KOG0278|consen   69 KNATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGH  142 (334)
T ss_pred             chhhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCC
Confidence            999999999999999999999998766   33 5999999999999999  79999999999999998764 56788999


Q ss_pred             CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352          486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  565 (1093)
Q Consensus       486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~  565 (1093)
                      .+.|..+.|....  +.+++.+.|++||+||.+++.....+... .+|+++.++++|++|..+.     .+.|..||..+
T Consensus       143 tg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdaks  214 (334)
T KOG0278|consen  143 TGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAKS  214 (334)
T ss_pred             CCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEecccc
Confidence            9999999986443  67888899999999999999988877654 4889999999999998875     33499999999


Q ss_pred             CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352          566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  645 (1093)
Q Consensus       566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  645 (1093)
                      -..++.+....    .|.+...+|+...+++|++|..++.||..+|+.+..+. .++..+|.|+.|+|+|...++|+.||
T Consensus       215 f~~lKs~k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~yAsGSEDG  289 (334)
T KOG0278|consen  215 FGLLKSYKMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGELYASGSEDG  289 (334)
T ss_pred             ccceeeccCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCceeeccCCCc
Confidence            99988887644    78999999999999999999999999999999988862 23456799999999999999999999


Q ss_pred             eEEEEEcCCCcee
Q 001352          646 RIKILETPESNSV  658 (1093)
Q Consensus       646 ~i~iw~~~~~~~~  658 (1093)
                      +|++|....++..
T Consensus       290 TirlWQt~~~~~~  302 (334)
T KOG0278|consen  290 TIRLWQTTPGKTY  302 (334)
T ss_pred             eEEEEEecCCCch
Confidence            9999998866443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.6e-30  Score=236.70  Aligned_cols=269  Identities=20%  Similarity=0.311  Sum_probs=237.5

Q ss_pred             eecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEE
Q 001352          392 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  471 (1093)
Q Consensus       392 ~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  471 (1093)
                      ++..|+++|.++.|+-||+|.++++.|.+|++|+...|.+++   ++.+|...|..++.+.|+.  .+++|+.|+.|.+|
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~vw   86 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQVW   86 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEEE
Confidence            377899999999999999999999999999999999998777   7889999999999999998  69999999999999


Q ss_pred             ECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCceEEEEEccCCCEEEEEe
Q 001352          472 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGRRLFSCG  549 (1093)
Q Consensus       472 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~~~~  549 (1093)
                      |+.+|+.++.+.+|.+.|+.+.|+  .+...+++|+.|..+++||-++.  ++++.+......|.++..+  +..+++++
T Consensus        87 DV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS  162 (307)
T KOG0316|consen   87 DVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS  162 (307)
T ss_pred             EcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence            999999999999999999999995  45579999999999999998865  4556666667778777764  56677777


Q ss_pred             cCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceE
Q 001352          550 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  629 (1093)
Q Consensus       550 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  629 (1093)
                      .    ++.++.||++.|+....+-+     .+|+++.|+++++..++++.|+++++.|-.+|+++....+|.....-...
T Consensus       163 ~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc  233 (307)
T KOG0316|consen  163 V----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC  233 (307)
T ss_pred             c----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence            6    77799999999998877776     45999999999999999999999999999999999999888765555667


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCCCceeeeccccccc-ceeeeecCCCc
Q 001352          630 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPIST  678 (1093)
Q Consensus       630 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-i~~~~~~~~~~  678 (1093)
                      +++.....+++|+.||.+.+||+.....+..+..+... +..+.+.|...
T Consensus       234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~  283 (307)
T KOG0316|consen  234 CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD  283 (307)
T ss_pred             eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCcc
Confidence            88888889999999999999999999999888887777 77788876443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.5e-31  Score=259.72  Aligned_cols=278  Identities=16%  Similarity=0.255  Sum_probs=234.1

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  475 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  475 (1093)
                      ....|.|+.+  |...+++|..|++|+|||.++-.+++   .+.||++.|.|+.|..  +  ++++|+.|.+|+|||+++
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd~--r--viisGSSDsTvrvWDv~t  266 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYDE--R--VIVSGSSDSTVRVWDVNT  266 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeeccc--e--EEEecCCCceEEEEeccC
Confidence            3467999988  57789999999999999999987766   6789999999999954  5  899999999999999999


Q ss_pred             CceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          476 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       476 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      |+++.++-+|...|..+.|+    ..++++++.|.++.+||+.....+   ..+.+|...|+.+.|+  .+++++++.  
T Consensus       267 ge~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg--  338 (499)
T KOG0281|consen  267 GEPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG--  338 (499)
T ss_pred             CchhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC--
Confidence            99999999999999999984    249999999999999999876643   3667888889998885  458988875  


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  632 (1093)
                        +.+|++|++.+++.++++.+|.   ..|.|+.+  .++++++|+.|.+|++||+..|.++..+++|..  -|.++.|.
T Consensus       339 --DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd  409 (499)
T KOG0281|consen  339 --DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD  409 (499)
T ss_pred             --CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec
Confidence              7789999999999999999998   77887776  578999999999999999999999999987754  58999995


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCCce---------eeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccce
Q 001352          633 KNGTLLAVIANENRIKILETPESNS---------VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI  703 (1093)
Q Consensus       633 ~~~~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~  703 (1093)
                        .+.+++|..||+|++||+.....         +..+..|.+.|..+.|                        |...++
T Consensus       410 --~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF------------------------D~fqIv  463 (499)
T KOG0281|consen  410 --NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF------------------------DEFQII  463 (499)
T ss_pred             --CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee------------------------cceEEE
Confidence              67899999999999999986532         3334455555555555                        466788


Q ss_pred             eecccccceecceeeccCcccc
Q 001352          704 SVEAENKSEVEKPLFARPSECQ  725 (1093)
Q Consensus       704 s~~~d~~i~~w~~~~~~~~~~~  725 (1093)
                      +++.|.+|.+||+..+.+....
T Consensus       464 sssHddtILiWdFl~~~~~~~~  485 (499)
T KOG0281|consen  464 SSSHDDTILIWDFLNGPPSAAE  485 (499)
T ss_pred             eccCCCeEEEEEcCCCCccccc
Confidence            9999999999998765554433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=7e-29  Score=304.34  Aligned_cols=294  Identities=14%  Similarity=0.170  Sum_probs=238.0

Q ss_pred             hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-CC
Q 001352          331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG  409 (1093)
Q Consensus       331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-dg  409 (1093)
                      +..|.+.|++++|+|+|+ ++|+|+.|+.|+|||..+......           ........+. +...|.+++|+| ++
T Consensus       479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~~~~~-~~~~v~~l~~~~~~~  545 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-----------DIHYPVVELA-SRSKLSGICWNSYIK  545 (793)
T ss_pred             ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-----------ccccceEEec-ccCceeeEEeccCCC
Confidence            456999999999999998 599999999999999864211000           0000000122 356899999987 57


Q ss_pred             CEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeC-CCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352          410 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  488 (1093)
Q Consensus       410 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  488 (1093)
                      .+||+++.||+|++||+.+++.+.   .+.+|.+.|++++|+| ++.  +|++|+.|++|++||+.++..+..+..+ ..
T Consensus       546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~  619 (793)
T PLN00181        546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN  619 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence            899999999999999999876544   6789999999999997 667  8999999999999999999999888754 67


Q ss_pred             eEEeeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-
Q 001352          489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-  566 (1093)
Q Consensus       489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~-  566 (1093)
                      |.++.|.+ +++.++++|+.||.|++||++... ....+..|...|.++.|. ++.++++++.    ++.|++||+..+ 
T Consensus       620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~  693 (793)
T PLN00181        620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSI  693 (793)
T ss_pred             eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCc
Confidence            88888853 467899999999999999998765 455677888899999997 7888888876    677999998743 


Q ss_pred             -----eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec-----------CCCCCCCceEE
Q 001352          567 -----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRIC  630 (1093)
Q Consensus       567 -----~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~  630 (1093)
                           ..+..+.+|.   ..+..++|+|++++|++|+.|+.|++|+......+..+..           ..+...|.+++
T Consensus       694 ~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~  770 (793)
T PLN00181        694 SGINETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC  770 (793)
T ss_pred             cccCCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence                 5677788877   7889999999999999999999999999876654433221           12234589999


Q ss_pred             EecCCCEEEEEECCCeEEEEEc
Q 001352          631 FNKNGTLLAVIANENRIKILET  652 (1093)
Q Consensus       631 ~s~~~~~l~~~~~dg~i~iw~~  652 (1093)
                      |+|++..|++++.+|.|++|++
T Consensus       771 ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        771 WRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EcCCCCeEEEecCCCcEEEEec
Confidence            9999999999999999999986

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.8e-29  Score=241.88  Aligned_cols=313  Identities=16%  Similarity=0.198  Sum_probs=242.9

Q ss_pred             HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccc-cceeeeeeecCCCCCeEEEEEC
Q 001352          328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGAC-SMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      ...|..|+..+.+.+|||||. |+|+|+.|.+|+|.|++..-... ...++..-... .++.. ..+-.|.++|+++.|+
T Consensus       105 t~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvI-RTlYDH~devn~l~FH  181 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVI-RTLYDHVDEVNDLDFH  181 (430)
T ss_pred             eEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceE-eehhhccCcccceeec
Confidence            345778999999999999998 79999999999999997311100 00000000000 11211 2377899999999999


Q ss_pred             CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe---e
Q 001352          407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---E  483 (1093)
Q Consensus       407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~---~  483 (1093)
                      |-...|++|+.|++|++||...-...+....+ ....+|.+++|.|.|.  +|+.|....++++||+.+-++...-   .
T Consensus       182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~  258 (430)
T KOG0640|consen  182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDD  258 (430)
T ss_pred             chhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccc
Confidence            99999999999999999999865433333233 3566899999999999  8899999999999999999886544   4


Q ss_pred             cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-C-CCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001352          484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-P-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  561 (1093)
Q Consensus       484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~-~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw  561 (1093)
                      +|.+.|+++.++  +.+.+.++++.||.|++||--+.+++.++.. | +..|.+..|+.+|+++++.+.    +..+++|
T Consensus       259 qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLW  332 (430)
T KOG0640|consen  259 QHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLW  332 (430)
T ss_pred             ccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeee
Confidence            699999999885  4668999999999999999888888776643 3 347889999999999999875    7789999


Q ss_pred             eCCCCeeeeeeecccccC--CCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEE
Q 001352          562 NESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL  638 (1093)
Q Consensus       562 d~~~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  638 (1093)
                      .+.+++.+..+.|....+  ..-+...|+....+++.- -..+.+.-||.+++..+..+.. ++...+..+.-||.+.-+
T Consensus       333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~F  411 (430)
T KOG0640|consen  333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAF  411 (430)
T ss_pred             eecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCce
Confidence            999999999998753111  122344577677777763 3567899999999888777664 345678999999999999


Q ss_pred             EEEECCCeEEEEEcC
Q 001352          639 AVIANENRIKILETP  653 (1093)
Q Consensus       639 ~~~~~dg~i~iw~~~  653 (1093)
                      ++++.|...++|-..
T Consensus       412 mTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  412 MTCSDDFRARFWYRR  426 (430)
T ss_pred             eeecccceeeeeeec
Confidence            999999999999654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.97  E-value=1.2e-28  Score=257.64  Aligned_cols=697  Identities=16%  Similarity=0.149  Sum_probs=367.0

Q ss_pred             HHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352          326 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  405 (1093)
Q Consensus       326 ~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  405 (1093)
                      +.+-.|.+|.+.|+.+.|||-...|||+|+.|..|+||.+..|-...-             ......+.+..-.|.|+.|
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~f  136 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRF  136 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeec
Confidence            345578899999999999997777999999999999999985432210             0011224455567889999


Q ss_pred             CCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC-CceeEEeec
Q 001352          406 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYSFEG  484 (1093)
Q Consensus       406 s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~~~~~  484 (1093)
                      +|...-|...+..|+++|||+.+++.+.   ++.+|...|.++.|+.||+  +|++++.|+.|+|||.++ ++.+++..+
T Consensus       137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~  211 (1012)
T KOG1445|consen  137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG  211 (1012)
T ss_pred             ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence            9977666666678899999999986554   7889999999999999999  899999999999999874 678888888


Q ss_pred             CCCCeEEeeecccCCccEEEEEecC----CeEEEEEcCCCCce-EEecC-CCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352          485 HGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFL  558 (1093)
Q Consensus       485 h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~-~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i  558 (1093)
                      |.+. ..-...+.++-..|++.+.+    ..|++||.+..... .++.. ....|.---|.||.++|+.++.   |+..+
T Consensus       212 H~~~-rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGK---G~~~l  287 (1012)
T KOG1445|consen  212 HGGM-RDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGK---GTNKL  287 (1012)
T ss_pred             cccc-hhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecC---CcceE
Confidence            8764 32222224454567666655    45899998765432 23222 2235566678999999888764   57778


Q ss_pred             EEEeCCCCeeee--eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceE-EEe---
Q 001352          559 VEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFN---  632 (1093)
Q Consensus       559 ~iwd~~~~~~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s---  632 (1093)
                      ..+.+...+..-  .++..-  .......++-|....-+..++  ..+++.+.....+... .+-  + -.+. .|+   
T Consensus       288 ~~lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~-y~V--P-RksyrdFH~DL  359 (1012)
T KOG1445|consen  288 FMLEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIP-YIV--P-RKSYRDFHSDL  359 (1012)
T ss_pred             EEEEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchh--hhhheecccCceeecc-ccc--c-hhhhhhhhhhh
Confidence            888876554321  111100  011122333333211111111  1223333222221110 000  0 0000 111   


Q ss_pred             -cCCCEEEEEECCCeEEEEEcCCCceeeec------ccc----cccceee------eecCCCceee-eeccCCceEecCC
Q 001352          633 -KNGTLLAVIANENRIKILETPESNSVDAA------GVL----SDNLRKL------SVNPISTVTG-AGIANGSVSVNED  694 (1093)
Q Consensus       633 -~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~----~~~i~~~------~~~~~~~~~~-~~~~~~~~~~~~~  694 (1093)
                       |+.+-...++.-|.   |-..+++.+..+      +.|    ...+...      +|.+....-+ .++....-.. ++
T Consensus       360 fPeT~G~~p~~~age---WlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~-~~  435 (1012)
T KOG1445|consen  360 FPETRGAEPGCTAGE---WLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSS-SN  435 (1012)
T ss_pred             CccccCCccCcCccc---eecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCcccccccc-cc
Confidence             11110011111010   111111111110      001    0000000      0000000000 0000000000 00


Q ss_pred             CCCCCccceeecccccceecceeeccCccc---ccc-ccCccccccceEEEEeecCCceEEEee----cc--ceeEEe--
Q 001352          695 PKEDVKPEISVEAENKSEVEKPLFARPSEC---QSL-LLPSKVKANKISRLTYNNGGQAIFALA----SN--GVHLMW--  762 (1093)
Q Consensus       695 ~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~---~~~-~~~~~~~~~~i~~l~~s~~g~~l~~~~----~d--g~v~vw--  762 (1093)
                      .-||-..--+......+|-.+....+....   -.. .-...+..+.+..+  ++....+.--.    .+  .+..+.  
T Consensus       436 ~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~--~~~~~~~~kP~S~plt~~~s~~s~~~P  513 (1012)
T KOG1445|consen  436 NVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTI--SPEPVTIVKPASTPLTDSVSTPSVVGP  513 (1012)
T ss_pred             CCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCcccc--CCCcccccCCCCcccccccccccccCc
Confidence            011100000000001111111000000000   000 00000000000000  00000000000    00  000000  


Q ss_pred             ----eecCcccCcCcc---cc----cc----------cCCcccCCCCCCcee----eccCCCCCCCCCeeEEEEccCCCE
Q 001352          763 ----RWPRNDLTLSTE---AT----TK----------VPPRLYQPRHGPQFM----VNDTTDSNSQEAVPCFALSKNDAY  817 (1093)
Q Consensus       763 ----~~~~~~~~~~~~---~~----~~----------~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~l~~s~dg~~  817 (1093)
                          .++......-+.   .+    ..          ..+.-|.-..|....    ...+......-+-.+=-|..+.+.
T Consensus       514 ~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~r  593 (1012)
T KOG1445|consen  514 AFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKR  593 (1012)
T ss_pred             cccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccce
Confidence                000000000000   00    00          000011111111000    000000000111112234456666


Q ss_pred             EEEE---eCCeEEEEEccC-ceeEEE-EC--CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-------ceeeec
Q 001352          818 LFSA---SGGVISLYIVMT-FKTILT-IM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-------EVISKL  883 (1093)
Q Consensus       818 la~~---~dg~i~iwd~~~-~~~~~~-~~--~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~-------~~~~~l  883 (1093)
                      +|+-   +.|.|.||++.. |+.... +.  -....|+.+.|.|.|...||+++.||.|++|.+..+       .....+
T Consensus       594 vAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l  673 (1012)
T KOG1445|consen  594 VAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL  673 (1012)
T ss_pred             EEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee
Confidence            6654   368999999874 332211 11  134578999999999999999999999999999764       234667


Q ss_pred             ccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEE
Q 001352          884 EGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLA  961 (1093)
Q Consensus       884 ~~h~~~V~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~  961 (1093)
                      .+|...|+++.|+| -.+.|++++.|.+|++||+.+..     ....+.+|..   .|..++|||||+.+|+ +.||+|+
T Consensus       674 t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHtd---qIf~~AWSpdGr~~AtVcKDg~~r  745 (1012)
T KOG1445|consen  674 TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHTD---QIFGIAWSPDGRRIATVCKDGTLR  745 (1012)
T ss_pred             ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCcC---ceeEEEECCCCcceeeeecCceEE
Confidence            88999999999998 34789999999999999999854     4445667765   8999999999999999 8999999


Q ss_pred             EEEcCCcceeeeeecCC-CCCEEEEEEccCCCEEEEEeCC----CcEEEEEcCCCceEEEeccccccCCCCCCCccceeE
Q 001352          962 IYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1036 (1093)
Q Consensus       962 vwd~~~~~~~~~~~~~h-~~~v~~~~fs~dg~~l~t~~~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1036 (1093)
                      ||+..+++....-..+. ..+-..+.|--||+++++.+-|    +.|.+||..+.....-........+    +   ++-
T Consensus       746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap----s---~Lv  818 (1012)
T KOG1445|consen  746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP----S---PLV  818 (1012)
T ss_pred             EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC----c---ccc
Confidence            99998876543222221 4455677899999999988876    4588998877553211110000000    0   111


Q ss_pred             EEeCCCCCCEEEEEeCCCcEEEEecCCCCCCcccCCC
Q 001352         1037 IAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1073 (1093)
Q Consensus      1037 ~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~ 1073 (1093)
                      =.|+++.+-+|++|-.|..|..|++..+.+-.-.+.|
T Consensus       819 P~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~  855 (1012)
T KOG1445|consen  819 PHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAP  855 (1012)
T ss_pred             ccccCCCceEEEecCCCceEEEEEecCCCceeeeccc
Confidence            2366666788999999999999999887765544433

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=2.8e-30  Score=257.77  Aligned_cols=298  Identities=16%  Similarity=0.232  Sum_probs=258.4

Q ss_pred             CCchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCe
Q 001352          321 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  400 (1093)
Q Consensus       321 ~~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  400 (1093)
                      +.+|..+...|..|.++|..+.|-++... |++|+.|..|++|++..++....                 ..+.|..++|
T Consensus       161 ~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i  222 (459)
T KOG0288|consen  161 DTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI  222 (459)
T ss_pred             cccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence            67889999999999999999999999664 89999999999999988773321                 1277888999


Q ss_pred             EEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE
Q 001352          401 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  480 (1093)
Q Consensus       401 ~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  480 (1093)
                      +++.|.++++++++++.|+.+++|++...+...   ++.||++.|+++.|.....  .+++|+.|.+|++||+..+.|.+
T Consensus       223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k  297 (459)
T KOG0288|consen  223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK  297 (459)
T ss_pred             ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence            999999999999999999999999999876544   7889999999999998877  59999999999999999999988


Q ss_pred             EeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352          481 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  560 (1093)
Q Consensus       481 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i  560 (1093)
                      ++- ....+..|+..    ...+++|-.|+.|++||.++.........++ .|+++..+++|..+++++.    +..+.+
T Consensus       298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v  367 (459)
T KOG0288|consen  298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV  367 (459)
T ss_pred             ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence            764 33445555542    3578999999999999999999888888776 9999999999999999976    667999


Q ss_pred             EeCCCCeeeeeeeccccc-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEE
Q 001352          561 WNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  639 (1093)
Q Consensus       561 wd~~~~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  639 (1093)
                      .|+++.+....+...... ....+.+.|+|++.|+++||.||.|+||++.++++...+......+.|.+++|+|.|..++
T Consensus       368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll  447 (459)
T KOG0288|consen  368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL  447 (459)
T ss_pred             eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence            999999988887654311 2348889999999999999999999999999999999998776666799999999999999


Q ss_pred             EEECCCeEEEEE
Q 001352          640 VIANENRIKILE  651 (1093)
Q Consensus       640 ~~~~dg~i~iw~  651 (1093)
                      +++.++.+.+|.
T Consensus       448 sadk~~~v~lW~  459 (459)
T KOG0288|consen  448 SADKQKAVTLWT  459 (459)
T ss_pred             cccCCcceEecC
Confidence            999999999983

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=2e-28  Score=266.63  Aligned_cols=285  Identities=23%  Similarity=0.342  Sum_probs=252.9

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +.+|.++|.+++|+|++++|++++.++.|++|++.+++...   .+..|...+..+.|+++++  .+++++.|+.|++||
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~   79 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD   79 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence            56899999999999999999999999999999999876433   5678999999999999998  799999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      +.+++.+..+..|...+.++.|.+.  +.++++++.+|.+++||+.+.+....+..+...+.+++|+|++.++++++.  
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  155 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ--  155 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence            9999999999999999999999654  568888888999999999988888888888889999999999998888764  


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  632 (1093)
                        ++.|.+||+.+++.+..+..+.   ..+.++.|+|+++.+++++.++.|++||+.+++.+..+..+.  ..+.+++|+
T Consensus       156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~  228 (289)
T cd00200         156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFS  228 (289)
T ss_pred             --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEc
Confidence              5669999999999888888766   789999999999999999999999999999988888775443  368999999


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccce
Q 001352          633 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  712 (1093)
Q Consensus       633 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  712 (1093)
                      |++.++++++.+|.+++|+..++.....+..+...+.++.++                      ++++.+++++.|+.++
T Consensus       229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~~l~~~~~d~~i~  286 (289)
T cd00200         229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS----------------------PDGKRLASGSADGTIR  286 (289)
T ss_pred             CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC----------------------CCCCEEEEecCCCeEE
Confidence            998888888889999999999888888888888888888886                      6778899999999999


Q ss_pred             ecc
Q 001352          713 VEK  715 (1093)
Q Consensus       713 ~w~  715 (1093)
                      +|+
T Consensus       287 iw~  289 (289)
T cd00200         287 IWD  289 (289)
T ss_pred             ecC
Confidence            996

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.8e-28  Score=230.05  Aligned_cols=281  Identities=16%  Similarity=0.225  Sum_probs=244.1

Q ss_pred             HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      ..+.+++|...|.+++|+.||.+ ||+|+.|+++.+|+++.++......                 ..+|.+.|..++|+
T Consensus        12 ~~r~~~~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~~~-----------------~~gh~~svdql~w~   73 (313)
T KOG1407|consen   12 KRRELQGHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKELV-----------------YRGHTDSVDQLCWD   73 (313)
T ss_pred             hhHHhhhhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhhhc-----------------ccCCCcchhhheeC
Confidence            34778899999999999999997 9999999999999999885554322                 67899999999999


Q ss_pred             C-CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecC
Q 001352          407 P-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  485 (1093)
Q Consensus       407 ~-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h  485 (1093)
                      | ...++++++.|.+|++||...+++....   .... .=..+.|+|+|+  +++.++.|..|.+.|.++.+.+...+ .
T Consensus        74 ~~~~d~~atas~dk~ir~wd~r~~k~~~~i---~~~~-eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~  146 (313)
T KOG1407|consen   74 PKHPDLFATASGDKTIRIWDIRSGKCTARI---ETKG-ENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-F  146 (313)
T ss_pred             CCCCcceEEecCCceEEEEEeccCcEEEEe---eccC-cceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-c
Confidence            8 5689999999999999999999876633   2222 334588999999  79999999999999999888776654 4


Q ss_pred             CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352          486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  565 (1093)
Q Consensus       486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~  565 (1093)
                      ...+..++|+.  ++.+++.....|.|.|..+...+.+..+..|...+.|+.|+|+|+++|+|+.    +..+.+||+..
T Consensus       147 ~~e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~E  220 (313)
T KOG1407|consen  147 KFEVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDE  220 (313)
T ss_pred             cceeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhH
Confidence            55677788863  4457777777899999999999999999999999999999999999999987    77799999999


Q ss_pred             CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC
Q 001352          566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  644 (1093)
Q Consensus       566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  644 (1093)
                      --+.+.+..+.   -+|..+.|+-+|++|++|++|..|-|=++++|..+..++..+.   ...|+|+|...+||.+++|
T Consensus       221 LiC~R~isRld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  221 LICERCISRLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             hhhheeecccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCCceeeEEecC
Confidence            99999999888   8999999999999999999999999999999999999987644   6899999999999998875

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=6.2e-30  Score=246.09  Aligned_cols=291  Identities=17%  Similarity=0.238  Sum_probs=240.4

Q ss_pred             ccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc
Q 001352          733 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  812 (1093)
Q Consensus       733 ~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  812 (1093)
                      +..+.+.+..|||||+++++++-||.+.+|++..++...+-+.++.         ..  ++.       +..+|.|+.||
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~--fMM-------md~aVlci~FS  272 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DN--FMM-------MDDAVLCISFS  272 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------cc--eee-------cccceEEEeec
Confidence            3556788999999999999999999999999987765443332221         11  222       67899999999


Q ss_pred             cCCCEEEEEe-CCeEEEEEccCceeEEEEC-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCe
Q 001352          813 KNDAYLFSAS-GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV  890 (1093)
Q Consensus       813 ~dg~~la~~~-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V  890 (1093)
                      .|...+|+|+ ||.|++|.+.+|.+++.|. +|...|+|+.||. |+..+.+++.|.++++.-+++|+++..++||++-|
T Consensus       273 RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyv  351 (508)
T KOG0275|consen  273 RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYV  351 (508)
T ss_pred             ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccc
Confidence            9999999998 8999999999999999997 8999999999999 88899999999999999999999999999999999


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCC-CEEEE-EeCCeEEEEEcCCc
Q 001352          891 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-TRFLL-VHETHLAIYEAEEL  968 (1093)
Q Consensus       891 ~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~-~~d~~i~vwd~~~~  968 (1093)
                      +...|++||.++++++.||+|++|+.++.++     +.++.... ..-+|.++-.-|.+ ..+++ -..+++.|.++. |
T Consensus       352 n~a~ft~dG~~iisaSsDgtvkvW~~KtteC-----~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-G  424 (508)
T KOG0275|consen  352 NEATFTDDGHHIISASSDGTVKVWHGKTTEC-----LSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-G  424 (508)
T ss_pred             cceEEcCCCCeEEEecCCccEEEecCcchhh-----hhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-c
Confidence            9999999999999999999999999999663     33322111 11257787777765 33444 467789999985 7


Q ss_pred             ceeeeeecCC--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCE
Q 001352          969 TCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ 1046 (1093)
Q Consensus       969 ~~~~~~~~~h--~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~ 1046 (1093)
                      +.++.+..|.  .+...+.+.||.|.++.+.++|+.++-|.+.+|.+...+..+.-.+.          -++-+| +.+.
T Consensus       425 QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvI----------Gl~HHP-HqNl  493 (508)
T KOG0275|consen  425 QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVI----------GLTHHP-HQNL  493 (508)
T ss_pred             eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccc----------ccccCc-ccch
Confidence            7777766654  56677888999999999999999999999999999888774443333          367888 6789


Q ss_pred             EEEEeCCCcEEEEe
Q 001352         1047 FAVGLTNGEVYVIE 1060 (1093)
Q Consensus      1047 l~~~~~dg~v~~w~ 1060 (1093)
                      ||+=++||.+++|.
T Consensus       494 lAsYsEDgllKLWk  507 (508)
T KOG0275|consen  494 LASYSEDGLLKLWK  507 (508)
T ss_pred             hhhhcccchhhhcC
Confidence            99999999999995

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.4e-27  Score=292.89  Aligned_cols=322  Identities=14%  Similarity=0.174  Sum_probs=248.2

Q ss_pred             CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCC----Ccc
Q 001352          357 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDA  432 (1093)
Q Consensus       357 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~----~~~  432 (1093)
                      +|.+++|+..+.+......              ..-+..|.+.|.+++|+|+|++||+|+.|+.|+|||..+.    ...
T Consensus       457 ~gl~~~~~~~~~~~~~~~~--------------~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~  522 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLK--------------QGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI  522 (793)
T ss_pred             hhhhhhhcccceEEEEeec--------------cccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence            6778888887655432211              1114569999999999999999999999999999998642    111


Q ss_pred             c-ceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCe
Q 001352          433 R-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK  511 (1093)
Q Consensus       433 ~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~  511 (1093)
                      . ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|...|++++|++. ++.+|++|+.||.
T Consensus       523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~  599 (793)
T PLN00181        523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS  599 (793)
T ss_pred             ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence            1 112233 3467999999886433 7999999999999999999999999999999999999753 4579999999999


Q ss_pred             EEEEEcCCCCceEEecCCCCceEEEEEc-cCCCEEEEEecCCCCceeEEEEeCCCCe-eeeeeecccccCCCeEEEEEcC
Q 001352          512 IKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDT  589 (1093)
Q Consensus       512 i~vwd~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~v~~~~  589 (1093)
                      |++||+.+......+..+ ..+.++.|+ ++|.++++++.    ++.|++||++++. .+..+.+|.   ..|.++.|. 
T Consensus       600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~-  670 (793)
T PLN00181        600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV-  670 (793)
T ss_pred             EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-
Confidence            999999988777766644 578899995 57999999876    6779999998765 456677776   889999997 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCC------ceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeeccc
Q 001352          590 AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV  663 (1093)
Q Consensus       590 ~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  663 (1093)
                      ++.++++++.|++|++||+..+      ..+..+..+  ...+..++|+|++.+|++|+.|+.+++|+......+.....
T Consensus       671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~  748 (793)
T PLN00181        671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF  748 (793)
T ss_pred             CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence            6789999999999999999743      456666655  34578999999999999999999999999765432221110


Q ss_pred             c-cccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEE
Q 001352          664 L-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT  742 (1093)
Q Consensus       664 ~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~  742 (1093)
                      . ...+                                                        ...  ....+...|.+++
T Consensus       749 ~~~~~~--------------------------------------------------------~~~--~~~~~~~~V~~v~  770 (793)
T PLN00181        749 KTIDPV--------------------------------------------------------SGL--EVDDASQFISSVC  770 (793)
T ss_pred             ccCCcc--------------------------------------------------------ccc--ccCCCCcEEEEEE
Confidence            0 0000                                                        000  0012456799999


Q ss_pred             eecCCceEEEeeccceeEEeee
Q 001352          743 YNNGGQAIFALASNGVHLMWRW  764 (1093)
Q Consensus       743 ~s~~g~~l~~~~~dg~v~vw~~  764 (1093)
                      |++++..+++++.+|.|++|++
T Consensus       771 ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        771 WRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EcCCCCeEEEecCCCcEEEEec
Confidence            9999999999999999999985

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=2.3e-28  Score=274.83  Aligned_cols=306  Identities=19%  Similarity=0.249  Sum_probs=248.0

Q ss_pred             CCCCceeeeecCCCceEEEEEc--cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCE
Q 001352          334 GSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  411 (1093)
Q Consensus       334 h~~~V~~~~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~  411 (1093)
                      +...|..++.+|||.. +|+|+  .||.++||+.+.--...    +.++.+   .+-....+..|.+.|+|+.|||||++
T Consensus        12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~~~----~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~   83 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLDEK----EEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY   83 (942)
T ss_pred             CCeeEEEEEecCCcee-EecCCccccccceeeccccccchh----hhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence            3556899999999995 89999  89999999975421100    011111   01111126679999999999999999


Q ss_pred             EEEEEcCCEEEEEEccC---C------------CcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC
Q 001352          412 LGVAYSKHIVQLYAYHG---G------------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  476 (1093)
Q Consensus       412 las~~~d~~i~iwd~~~---~------------~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  476 (1093)
                      ||+|++|+.|.||+...   +            +..+....+.+|...|..++|+|++.  ++++++.|++|.|||..+.
T Consensus        84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence            99999999999999883   1            01234556889999999999999999  8999999999999999999


Q ss_pred             ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC------CceEEEEEccCCCEEEEEec
Q 001352          477 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------LGCTRMAYSANGRRLFSCGT  550 (1093)
Q Consensus       477 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------~~v~~~~~s~d~~~l~~~~~  550 (1093)
                      +.+..+.+|.+.|..+.|.  +-|+++++-+.|++|++|+..+......+..+-      ..+..+.|||||++|++...
T Consensus       162 ~~~~vl~~H~s~VKGvs~D--P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  162 ELLKVLRGHQSLVKGVSWD--PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             eeeeeeecccccccceEEC--CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence            9999999999999999995  467899999999999999977755555554432      24788999999999999877


Q ss_pred             CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC-----CC------------EEEEEeCCCcEEEEECCCCce
Q 001352          551 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KD------------QILAAGDDHVIKIWDMNKVQL  613 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~-----~~------------~l~~~~~dg~i~iwd~~~~~~  613 (1093)
                      -+.+...+.|.+-.+.+.-..+.||.   .++.++.|+|.     .+            .+++|+.|++|.||.....++
T Consensus       240 ~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP  316 (942)
T KOG0973|consen  240 VNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP  316 (942)
T ss_pred             ccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence            66677889999998888889999999   89999999972     11            456699999999999988777


Q ss_pred             EEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352          614 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       614 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      +..+..-.. ..|..++|+|||..|++++.||+|.++.....
T Consensus       317 l~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  317 LFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             hhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            765543222 45899999999999999999999999998754

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.2e-28  Score=250.17  Aligned_cols=285  Identities=19%  Similarity=0.238  Sum_probs=241.3

Q ss_pred             ccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCE
Q 001352          332 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  411 (1093)
Q Consensus       332 ~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~  411 (1093)
                      ..|. .|++++|||...+=+|+.+. -.+.||+..+...+..                   +......|.++.|-.||++
T Consensus        24 ke~~-~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~L   82 (487)
T KOG0310|consen   24 KEHN-SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRL   82 (487)
T ss_pred             cccC-cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeE
Confidence            3454 99999999966554444332 6799999888776653                   3335678999999999999


Q ss_pred             EEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEE
Q 001352          412 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS  491 (1093)
Q Consensus       412 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~  491 (1093)
                      ||+|...|.|+|||+.+...++   .+.+|+.+|..+.|+|++.. .+++|+.|+.+++||+.+......+.+|+..|.+
T Consensus        83 laaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~  158 (487)
T KOG0310|consen   83 LAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC  158 (487)
T ss_pred             EEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence            9999999999999977644445   57899999999999999887 8999999999999999999987799999999999


Q ss_pred             eeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-eee
Q 001352          492 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKR  570 (1093)
Q Consensus       492 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~  570 (1093)
                      .+++|. ++.++++|+.||.|++||.+.......--.|+.+|..+.+-|.|..+++++.     +.|++||+.+|. .+.
T Consensus       159 g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-----n~vkVWDl~~G~qll~  232 (487)
T KOG0310|consen  159 GDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-----NSVKVWDLTTGGQLLT  232 (487)
T ss_pred             eccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-----CeEEEEEecCCceehh
Confidence            999876 4479999999999999999998655555668889999999999999999873     459999999654 444


Q ss_pred             eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001352          571 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  650 (1093)
Q Consensus       571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  650 (1093)
                      .+..|.   ..|+|+++..++..|++|+-|+.|++||+.+.+.+..+...+   +|.+++.+|++..+++|..+|.+.+-
T Consensus       233 ~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  233 SMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             hhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeee
Confidence            444466   899999999999999999999999999999999998887664   48999999999999999999998876


Q ss_pred             EcC
Q 001352          651 ETP  653 (1093)
Q Consensus       651 ~~~  653 (1093)
                      +..
T Consensus       307 r~~  309 (487)
T KOG0310|consen  307 RRE  309 (487)
T ss_pred             hhh
Confidence            443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=1.2e-27  Score=225.26  Aligned_cols=287  Identities=13%  Similarity=0.152  Sum_probs=240.6

Q ss_pred             eeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEE
Q 001352          391 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  470 (1093)
Q Consensus       391 ~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  470 (1093)
                      ..+.||+.+++.+.|+.+|.+|.+|+.|.++.||-...|+.+.   ++.||++.|+|++..-+.+  .++||+.|.++++
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kL   78 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKL   78 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEE
Confidence            3488999999999999999999999999999999998887665   8899999999999999999  8999999999999


Q ss_pred             EECCCCceeEEeecCCCCeEEeeecccCCccEEEEEec-----CCeEEEEEcC-------CCCceEEecCCCCceEEEEE
Q 001352          471 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYD-------SLGARVDYDAPGLGCTRMAY  538 (1093)
Q Consensus       471 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~vwd~~-------~~~~~~~~~~~~~~v~~~~~  538 (1093)
                      ||+++|+++.+++ ...+|..+.|++  +|++++....     .+.|.++|++       ..++...+..+...++.+-|
T Consensus        79 WDv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W  155 (327)
T KOG0643|consen   79 WDVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW  155 (327)
T ss_pred             EEcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence            9999999999997 677899999965  4455555543     3669999988       44557778888899999999


Q ss_pred             ccCCCEEEEEecCCCCceeEEEEeCCCCee-eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001352          539 SANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  617 (1093)
Q Consensus       539 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  617 (1093)
                      +|-++.|++|..    ++.|.+||.++|.. +..-+.|.   ..|+.+.++++..++++++.|.+-++||..+-+.++++
T Consensus       156 g~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty  228 (327)
T KOG0643|consen  156 GPLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY  228 (327)
T ss_pred             cccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence            999999999986    66699999999854 44445555   79999999999999999999999999999999999998


Q ss_pred             ecCCCCCCCceEEEecCCCEEEEEECCCeEEEEE--------------cCCCceeeecccccccceeeeecCCCceeeee
Q 001352          618 DAGGGLPENPRICFNKNGTLLAVIANENRIKILE--------------TPESNSVDAAGVLSDNLRKLSVNPISTVTGAG  683 (1093)
Q Consensus       618 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~--------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  683 (1093)
                      ...   .++++.+++|....++.|+.....-+=.              +-..+.+...++|-++|++++|+         
T Consensus       229 ~te---~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh---------  296 (327)
T KOG0643|consen  229 TTE---RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH---------  296 (327)
T ss_pred             eec---ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC---------
Confidence            765   3589999999888887776543332222              22224567788999999999997         


Q ss_pred             ccCCceEecCCCCCCCccceeecccccceeccee
Q 001352          684 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  717 (1093)
Q Consensus       684 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  717 (1093)
                                   |+|+..++|+.||.||+..++
T Consensus       297 -------------PdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  297 -------------PDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             -------------CCCcccccCCCCceEEEEEec
Confidence                         788889999999999986543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=3.5e-29  Score=232.87  Aligned_cols=287  Identities=14%  Similarity=0.182  Sum_probs=254.0

Q ss_pred             ecCCCCCeEEEEECC---CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352          393 VRDPGVSVNRVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  469 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~---dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  469 (1093)
                      ..||..+|..++|||   +|-+|++++.|+.-.+-+-++|.-+.   ++.||.+.|++.....+..  ..++++.|=+.+
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadftak   84 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTAK   84 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchhh
Confidence            678999999999986   89999999999988888888887665   7899999999999998877  789999999999


Q ss_pred             EEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEE
Q 001352          470 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC  548 (1093)
Q Consensus       470 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~  548 (1093)
                      |||.-+|..+++|. |...|.+++|  +.|.++|++|+.+..+|+||++..+. ...+.+|.+.|..+.|....+.+++.
T Consensus        85 vw~a~tgdelhsf~-hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS  161 (334)
T KOG0278|consen   85 VWDAVTGDELHSFE-HKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS  161 (334)
T ss_pred             hhhhhhhhhhhhhh-hhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence            99999999999996 9999999999  55678999999999999999987654 55788999999999999999999987


Q ss_pred             ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352          549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  628 (1093)
Q Consensus       549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  628 (1093)
                      +.    ++.|++||.+++..++.+...    .+|.++.++++|.++. ....+.|.+||..+..+++.......   |.+
T Consensus       162 ad----d~tVRLWD~rTgt~v~sL~~~----s~VtSlEvs~dG~ilT-ia~gssV~Fwdaksf~~lKs~k~P~n---V~S  229 (334)
T KOG0278|consen  162 AD----DKTVRLWDHRTGTEVQSLEFN----SPVTSLEVSQDGRILT-IAYGSSVKFWDAKSFGLLKSYKMPCN---VES  229 (334)
T ss_pred             cc----CCceEEEEeccCcEEEEEecC----CCCcceeeccCCCEEE-EecCceeEEeccccccceeeccCccc---ccc
Confidence            54    667999999999999998764    4899999999987554 45567899999999999988876643   889


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCceeeec-ccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001352          629 ICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  707 (1093)
Q Consensus       629 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~  707 (1093)
                      .+++|+...+++|+.|..++.||..++..+... ++|..+|.|+.|+                      |||..-++|+.
T Consensus       230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS----------------------PdGE~yAsGSE  287 (334)
T KOG0278|consen  230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS----------------------PDGELYASGSE  287 (334)
T ss_pred             ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC----------------------CCCceeeccCC
Confidence            999999999999999999999999999999885 9999999999997                      78888899999


Q ss_pred             cccceecceeeccC
Q 001352          708 ENKSEVEKPLFARP  721 (1093)
Q Consensus       708 d~~i~~w~~~~~~~  721 (1093)
                      ||+|++|.....+.
T Consensus       288 DGTirlWQt~~~~~  301 (334)
T KOG0278|consen  288 DGTIRLWQTTPGKT  301 (334)
T ss_pred             CceEEEEEecCCCc
Confidence            99999999765443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=1.6e-27  Score=224.39  Aligned_cols=287  Identities=11%  Similarity=0.100  Sum_probs=238.6

Q ss_pred             hhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCC
Q 001352          330 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  409 (1093)
Q Consensus       330 ~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg  409 (1093)
                      .|.||..+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+                   +.||.+.|.|+..+-+.
T Consensus         5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s   64 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS   64 (327)
T ss_pred             ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence            4789999999999999999 799999999999999999999987                   88999999999999999


Q ss_pred             CEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEc-----CCCcEEEEECC-------CCc
Q 001352          410 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAV-------TGS  477 (1093)
Q Consensus       410 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-----~d~~i~vwd~~-------~~~  477 (1093)
                      +++++|+.|.++++||+++|+++..   + ....+|..+.|+++|..  ++...     ..+.|.++|++       ..+
T Consensus        65 ~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e  138 (327)
T KOG0643|consen   65 KHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSEE  138 (327)
T ss_pred             ceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence            9999999999999999999987653   3 35678999999999983  33332     34679999987       456


Q ss_pred             eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001352          478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  556 (1093)
Q Consensus       478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~  556 (1093)
                      +...+..+...++.+.|.+.  +++|++|..||.|..||++++.... ....|...|+.+.+++|..++++++.    +.
T Consensus       139 p~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dt  212 (327)
T KOG0643|consen  139 PYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DT  212 (327)
T ss_pred             ceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cc
Confidence            68888889999999999664  4799999999999999999976555 45778889999999999999999987    66


Q ss_pred             eEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEE--EECCCC------------ceEEEEecCCC
Q 001352          557 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI--WDMNKV------------QLLTTIDAGGG  622 (1093)
Q Consensus       557 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~i--wd~~~~------------~~~~~~~~~~~  622 (1093)
                      +-.+||..+-+.++++...    .+|++.+++|....++.|+.....-|  =+.+.|            +.+..+.  ++
T Consensus       213 takl~D~~tl~v~Kty~te----~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GH  286 (327)
T KOG0643|consen  213 TAKLVDVRTLEVLKTYTTE----RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GH  286 (327)
T ss_pred             cceeeeccceeeEEEeeec----ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--cc
Confidence            6899999999999999874    49999999999888888664322222  111222            2333444  44


Q ss_pred             CCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352          623 LPENPRICFNKNGTLLAVIANENRIKILETPE  654 (1093)
Q Consensus       623 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  654 (1093)
                      ..+|++++|+|+|+..++|+.||.|++.....
T Consensus       287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            66799999999999999999999999986653

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.5e-26  Score=224.98  Aligned_cols=285  Identities=16%  Similarity=0.236  Sum_probs=236.5

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  412 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l  412 (1093)
                      .-.+.|.++.|+++|.+ +++++.|.+++|||..+|++++.                   +..++-.|..+.|......+
T Consensus        12 ~~~~~i~sl~fs~~G~~-litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~   71 (311)
T KOG1446|consen   12 ETNGKINSLDFSDDGLL-LITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTV   71 (311)
T ss_pred             cCCCceeEEEecCCCCE-EEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceE
Confidence            34568999999999995 67788899999999999999876                   44566788899998887777


Q ss_pred             EEEEc--CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352          413 GVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  490 (1093)
Q Consensus       413 as~~~--d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~  490 (1093)
                      +.++.  |.+|+.-++.+.+.++   -+.||...|++++.+|-+.  .+++++.|++|++||++..++...+.....++.
T Consensus        72 i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~  146 (311)
T KOG1446|consen   72 IHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIA  146 (311)
T ss_pred             EEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcce
Confidence            77766  7899999999998777   7889999999999999998  899999999999999999988877765555554


Q ss_pred             EeeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecC---CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352          491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  565 (1093)
Q Consensus       491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~---~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~  565 (1093)
                        +|  ++.|-++|++...+.|++||++...  +-..+..   ...+.+.+.|||||++++.+..    .+.+++.|.-+
T Consensus       147 --Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~  218 (311)
T KOG1446|consen  147 --AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFD  218 (311)
T ss_pred             --eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccC
Confidence              45  5677788888888899999998752  3333333   3557899999999999999875    66799999999


Q ss_pred             CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352          566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  645 (1093)
Q Consensus       566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  645 (1093)
                      |..+..+.++......-...+|+||++++++|+.||+|.+|++++|..+..+... ....+.++.|+|.-..+++++  .
T Consensus       219 G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s  295 (311)
T KOG1446|consen  219 GTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--S  295 (311)
T ss_pred             CcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--c
Confidence            9999999988754444567889999999999999999999999999999999875 345688999999776666654  5


Q ss_pred             eEEEEEcC
Q 001352          646 RIKILETP  653 (1093)
Q Consensus       646 ~i~iw~~~  653 (1093)
                      .+.+|-..
T Consensus       296 ~l~fw~p~  303 (311)
T KOG1446|consen  296 NLVFWLPD  303 (311)
T ss_pred             eEEEEecc
Confidence            77788654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=1e-27  Score=237.04  Aligned_cols=281  Identities=20%  Similarity=0.363  Sum_probs=233.3

Q ss_pred             CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC---CC
Q 001352          334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GS  410 (1093)
Q Consensus       334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d---g~  410 (1093)
                      |.+.|.++...  ++ .+.+|+.||.++|||.. |+....                   +.||.++|.+++|--.   ..
T Consensus       104 hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v~~v~~n~~~~  160 (423)
T KOG0313|consen  104 HDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSVAWVIKNSSSC  160 (423)
T ss_pred             chhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeeeEEEecCCccc
Confidence            88899999998  44 48999999999999965 555443                   7899999998888543   33


Q ss_pred             EEEEEEcCCEEEEEEccCCCccc-ceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC---------------
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---------------  474 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---------------  474 (1093)
                      .+++++.|.++++|.++.++... ......||...|.+++..++|.  .+++|+.|.+|+||+.+               
T Consensus       161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr  238 (423)
T KOG0313|consen  161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRRR  238 (423)
T ss_pred             eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhhh
Confidence            69999999999999999876532 2223459999999999999999  89999999999999932               


Q ss_pred             ----------CCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001352          475 ----------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  544 (1093)
Q Consensus       475 ----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~  544 (1093)
                                ++.++-++.||..+|.++.|.+   ...+++++.|.+|+.||+.+++....+... ....++.++|..++
T Consensus       239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~L  314 (423)
T KOG0313|consen  239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKL  314 (423)
T ss_pred             hhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccce
Confidence                      2234567889999999999965   358999999999999999998887776654 47899999999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCe---eeeeeecccccCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCc-eEEEEec
Q 001352          545 LFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQ-LLTTIDA  619 (1093)
Q Consensus       545 l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~~~dg~i~iwd~~~~~-~~~~~~~  619 (1093)
                      |++++.    +..+++||++++.   ....+.+|.   +.|.++.|+|...+ |++|+.|+++++||+++.+ ++..+..
T Consensus       315 l~~gss----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~  387 (423)
T KOG0313|consen  315 LASGSS----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG  387 (423)
T ss_pred             eeecCC----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc
Confidence            999987    6679999998764   356677777   89999999998765 5669999999999999877 8888877


Q ss_pred             CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352          620 GGGLPENPRICFNKNGTLLAVIANENRIKILETP  653 (1093)
Q Consensus       620 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  653 (1093)
                      |.  ..|.++.|+. +..+++|+.|.+|+|+...
T Consensus       388 h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  388 HN--DKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CC--ceEEEEeccC-CceEEeccCcceEEEeccc
Confidence            64  4588899875 6689999999999998654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=6.1e-28  Score=231.44  Aligned_cols=307  Identities=13%  Similarity=0.191  Sum_probs=238.8

Q ss_pred             CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccc
Q 001352          623 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  702 (1093)
Q Consensus       623 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  702 (1093)
                      ...+.+.+|++||.++++|+.|..|+|+|++..-...   .+.+                                   +
T Consensus       112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks---~~~e-----------------------------------m  153 (430)
T KOG0640|consen  112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS---KPKE-----------------------------------M  153 (430)
T ss_pred             ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc---chhh-----------------------------------h
Confidence            4568999999999999999999999999987321100   0000                                   0


Q ss_pred             eeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCc
Q 001352          703 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  782 (1093)
Q Consensus       703 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  782 (1093)
                      ..+.              +....++....-.|...|+.+.|+|....|++++.|+++++||+.......-        .+
T Consensus       154 ~~~~--------------~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA--------~K  211 (430)
T KOG0640|consen  154 ISGD--------------TQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA--------FK  211 (430)
T ss_pred             ccCC--------------cccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH--------HH
Confidence            0000              0011111111123889999999999999999999999999999876432100        01


Q ss_pred             ccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeC-CeEEEEEccCceeEEEEC---CCCCCeEEEEEcCCCCC
Q 001352          783 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNN  858 (1093)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~  858 (1093)
                      +             +   ....+|.++.|+|.|.+|++|.+ .++++||+++.++.....   .|.+.|+++.+++ .++
T Consensus       212 ~-------------~---qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~  274 (430)
T KOG0640|consen  212 V-------------F---QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGS  274 (430)
T ss_pred             H-------------h---hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-Ccc
Confidence            1             0   15678999999999999999997 889999999988766543   5788999999999 899


Q ss_pred             EEEEEeCCCeEEEEEcCCcceeeecc-cccC-CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccC
Q 001352          859 VIAIGMDDSTILIYNARSSEVISKLE-GHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  936 (1093)
Q Consensus       859 ~lasg~~dg~i~iwd~~~~~~~~~l~-~h~~-~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  936 (1093)
                      +.++|+.||.|++||--+++++.++. +|.+ .|.+..|+.+|+++++.|.|..+++|.+.+++......=....+..  
T Consensus       275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq--  352 (430)
T KOG0640|consen  275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ--  352 (430)
T ss_pred             EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch--
Confidence            99999999999999999999998886 4654 6889999999999999999999999999997643322111112222  


Q ss_pred             CCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001352          937 APSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus       937 ~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
                       .--+...|+....+++.-  ..+.+.-||..++..+..+..+|++.+..+.-||.+.-++||+.|-++++|--.
T Consensus       353 -~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  353 -KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             -hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence             134567888888988873  456799999999999999999999999999999999999999999999999643

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.4e-28  Score=265.05  Aligned_cols=309  Identities=16%  Similarity=0.205  Sum_probs=224.2

Q ss_pred             HHHhhc-cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352          327 VAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  405 (1093)
Q Consensus       327 ~~~~l~-~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  405 (1093)
                      ..|.+. .|.+.||++.||+||+| ||+|+.||.|+||.+...+......   -+. .|... .   +. -.+.+..+.-
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~---~~~-~~~~~-~---~~-~~s~~~p~~s  327 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAE---GDS-SCMYF-E---YN-ANSQIEPSTS  327 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccc---ccc-chhhh-h---hh-hccccCcccc
Confidence            345556 89999999999999995 9999999999999997744321100   000 00000 0   00 0000111111


Q ss_pred             CC---CCC--EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE
Q 001352          406 SP---DGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  480 (1093)
Q Consensus       406 s~---dg~--~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  480 (1093)
                      ++   .++  ..-.+.....+.+-+..-.-.-+++..+.||.+.|.+++||.++   +|++++.|++|++|++....|++
T Consensus       328 ~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~  404 (712)
T KOG0283|consen  328 SEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLK  404 (712)
T ss_pred             ccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceee
Confidence            11   011  11112222222222211111123344788999999999999986   69999999999999999999999


Q ss_pred             EeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352          481 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  560 (1093)
Q Consensus       481 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i  560 (1093)
                      .|. |...|+|++|+|..| +++++|+-||.||+|++...+.......+ .-|++++|+|||++.++|+.    +|..++
T Consensus       405 ~F~-HndfVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~----~G~C~f  477 (712)
T KOG0283|consen  405 VFS-HNDFVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTF----NGYCRF  477 (712)
T ss_pred             EEe-cCCeeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEe----ccEEEE
Confidence            996 999999999999855 79999999999999999876555544444 68999999999999999987    667999


Q ss_pred             EeCCCCeeeeeeeccc-----ccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC
Q 001352          561 WNESEGAIKRTYQGLQ-----LQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  634 (1093)
Q Consensus       561 wd~~~~~~~~~~~~~~-----~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  634 (1093)
                      |+...-+....+.-+.     .....|+.+.|.|.. ..+++.+.|..|+|+|.++..++..+.+......-....|+.|
T Consensus       478 Y~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~D  557 (712)
T KOG0283|consen  478 YDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSD  557 (712)
T ss_pred             EEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccC
Confidence            9988777665544322     112379999999754 3588999999999999999999988887665556678899999


Q ss_pred             CCEEEEEECCCeEEEEEcCCC
Q 001352          635 GTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       635 ~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      |++|+++++|..|++|+....
T Consensus       558 gk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  558 GKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             CCEEEEeecCceEEEEeCCCC
Confidence            999999999999999998654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=4.1e-26  Score=208.89  Aligned_cols=307  Identities=18%  Similarity=0.210  Sum_probs=234.9

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEE-eeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      .+|.. +..|.+++|+|.|. |.|+|+...+.+|-....-..++. ..-..+     ........-+.|.+.|.|.+|||
T Consensus        27 ~~l~d-sqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~-----pp~v~~kr~khhkgsiyc~~ws~   99 (350)
T KOG0641|consen   27 NILED-SQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQ-----PPSVLCKRNKHHKGSIYCTAWSP   99 (350)
T ss_pred             EEecc-hhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccccccccC-----CCeEEeeeccccCccEEEEEecC
Confidence            33443 44899999999998 799999999998876533221110 000000     00011112457999999999999


Q ss_pred             CCCEEEEEEcCCEEEEEEccC--CCcccceEEeccccccEEEEEeeCC---CCcEEEEEEc-CCCcEEEEECCCCceeEE
Q 001352          408 DGSLLGVAYSKHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTGSRTYS  481 (1093)
Q Consensus       408 dg~~las~~~d~~i~iwd~~~--~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~-~d~~i~vwd~~~~~~~~~  481 (1093)
                      +|++||+|+.|.+|++.-.+.  ......-.++.-|.+.|..++|..+   +.. +|++++ .|..|++-|-.+|+..+.
T Consensus       100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~a  178 (350)
T KOG0641|consen  100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFHA  178 (350)
T ss_pred             ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCccee
Confidence            999999999999999876553  3334444568889999999999654   232 566654 577888889999999999


Q ss_pred             eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------CCCceEEEEEccCCCEEEEEecCCCC
Q 001352          482 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEG  554 (1093)
Q Consensus       482 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~s~d~~~l~~~~~~~~~  554 (1093)
                      +.+|++.|.++--   =++.++++|+.|.+|++||++-...+.++..       ....|.++++.|.|++|+++..    
T Consensus       179 ~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~----  251 (350)
T KOG0641|consen  179 LSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA----  251 (350)
T ss_pred             ecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC----
Confidence            9999999988742   2567999999999999999998777765532       2246899999999999999876    


Q ss_pred             ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eEEEEecCCCCCCCceEEEe
Q 001352          555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ--LLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~s  632 (1093)
                      +....+||++.++.++.+..|.   ..|.++.|+|...++++++.|..|++-|+...-  .+..+-...+...+..+.|+
T Consensus       252 dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh  328 (350)
T KOG0641|consen  252 DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWH  328 (350)
T ss_pred             CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEec
Confidence            5568999999999999999988   899999999999999999999999999987421  11111122233456788999


Q ss_pred             cCCCEEEEEECCCeEEEEEcC
Q 001352          633 KNGTLLAVIANENRIKILETP  653 (1093)
Q Consensus       633 ~~~~~l~~~~~dg~i~iw~~~  653 (1093)
                      |..--+++.+.|.+..+|.+.
T Consensus       329 ~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  329 PQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             CccceeeeccCcceEEEeccC
Confidence            998889999999999999764

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=3.4e-26  Score=257.01  Aligned_cols=288  Identities=12%  Similarity=0.128  Sum_probs=223.8

Q ss_pred             CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-CCCEE
Q 001352          334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL  412 (1093)
Q Consensus       334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-dg~~l  412 (1093)
                      |-..|....+++|+.. +++++.+..+..|+...|..+.      +.............+.+|.+.|.+++|+| ++.+|
T Consensus        19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L   91 (493)
T PTZ00421         19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL   91 (493)
T ss_pred             ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence            4457888888999764 6777778888899887664331      11111111112234789999999999999 89999


Q ss_pred             EEEEcCCEEEEEEccCCCc----ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352          413 GVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  488 (1093)
Q Consensus       413 as~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  488 (1093)
                      |+|+.|++|++||+.++..    ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...
T Consensus        92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~  170 (493)
T PTZ00421         92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ  170 (493)
T ss_pred             EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence            9999999999999986532    1234468899999999999998644 7999999999999999999999999999999


Q ss_pred             eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCc-eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352          489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  567 (1093)
Q Consensus       489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~  567 (1093)
                      |.+++|++  ++.+|++++.||.|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|++||+++..
T Consensus       171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            99999965  6789999999999999999998888888777654 45678899988888877655557889999998754


Q ss_pred             e-eeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC
Q 001352          568 I-KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  634 (1093)
Q Consensus       568 ~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  634 (1093)
                      . ......+.  ...+....|+++++.+++++ .|+.|++||+.+++......... ...+..++|.|.
T Consensus       249 ~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk  314 (493)
T PTZ00421        249 SPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPK  314 (493)
T ss_pred             CceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEeccc
Confidence            3 33332222  24566678999999999887 59999999999998877654432 235778888884

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=6.9e-27  Score=262.09  Aligned_cols=283  Identities=17%  Similarity=0.289  Sum_probs=248.1

Q ss_pred             CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352          334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  413 (1093)
Q Consensus       334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la  413 (1093)
                      |...+.|..|. ++  .+++|+.|++|++||..++..+..                  -+.||.+.|.+++|..-+.+|+
T Consensus       207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv  265 (537)
T KOG0274|consen  207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV  265 (537)
T ss_pred             Ccchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence            56688899999 55  389999999999999999987754                  1779999999999998889999


Q ss_pred             EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEee
Q 001352          414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC  493 (1093)
Q Consensus       414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  493 (1093)
                      +|+.|.++++||..+|++..   .+.+|...|.++...+.    ++++|+.|.+|++|++.++.+++.+.+|.++|+++.
T Consensus       266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~  338 (537)
T KOG0274|consen  266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ  338 (537)
T ss_pred             EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence            99999999999999998777   78899999999987653    688999999999999999999999999999999998


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-eeeeee
Q 001352          494 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTY  572 (1093)
Q Consensus       494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~  572 (1093)
                      ..    +.++++|+.||+|++||+.+.+.+..+.+|...|.++.+.+. ..+++++.    |..|++||+.++ +++.++
T Consensus       339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~tl  409 (537)
T KOG0274|consen  339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHTL  409 (537)
T ss_pred             ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhhh
Confidence            73    569999999999999999999999999999999999988766 88889887    567999999999 999999


Q ss_pred             ecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352          573 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  652 (1093)
Q Consensus       573 ~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  652 (1093)
                      .+|.   .-+..+.+  .++++++++.|++|++||..+++++..+... +...|..+++.  ...+++++.+|.+++||+
T Consensus       410 ~~h~---~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl  481 (537)
T KOG0274|consen  410 QGHT---SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDL  481 (537)
T ss_pred             cCCc---cccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEec
Confidence            9988   55654444  5689999999999999999999999999874 23346666655  468999999999999999


Q ss_pred             CCCceeeec
Q 001352          653 PESNSVDAA  661 (1093)
Q Consensus       653 ~~~~~~~~~  661 (1093)
                      .++.....+
T Consensus       482 ~~~~~~~~l  490 (537)
T KOG0274|consen  482 RSGTLIRTL  490 (537)
T ss_pred             ccCchhhhh
Confidence            998777655

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=8.2e-27  Score=262.35  Aligned_cols=306  Identities=17%  Similarity=0.230  Sum_probs=239.1

Q ss_pred             cccceEEEEeecCCceEEEee--ccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEE
Q 001352          734 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  811 (1093)
Q Consensus       734 ~~~~i~~l~~s~~g~~l~~~~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  811 (1093)
                      +...|.++..+|+|..+++++  .||.+++|+...-..          ....++..-...+...    ..|.+.|.|+.|
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~m----~~h~~sv~CVR~   77 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCTM----DDHDGSVNCVRF   77 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhheee----ccccCceeEEEE
Confidence            455689999999999999999  888899998653211          1111222111111111    139999999999


Q ss_pred             ccCCCEEEEEeC-CeEEEEEccC------------------ceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001352          812 SKNDAYLFSASG-GVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY  872 (1093)
Q Consensus       812 s~dg~~la~~~d-g~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iw  872 (1093)
                      +|||++||+|+| ..|.||+...                  ++.+..+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus        78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw  156 (942)
T KOG0973|consen   78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW  156 (942)
T ss_pred             CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence            999999999995 7789998762                  346778999999999999999 99999999999999999


Q ss_pred             EcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEE
Q 001352          873 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF  952 (1093)
Q Consensus       873 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  952 (1093)
                      |..+.+.+.++++|.+.|-.+.|.|-|++|||-+.|++|+||++......+  .+..+..+......+..+.|||||.+|
T Consensus       157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l  234 (942)
T KOG0973|consen  157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL  234 (942)
T ss_pred             ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence            999999999999999999999999999999999999999999987744333  444444444444568899999999999


Q ss_pred             EE--EeC---CeEEEEEcCCcceeeeeecCCCCCEEEEEEcc--------CC-----C----EEEEEeCCCcEEEEEcCC
Q 001352          953 LL--VHE---THLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC-----R----MVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus       953 ~~--~~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~--------dg-----~----~l~t~~~dg~v~vwd~~~ 1010 (1093)
                      ++  +.+   ..+.|.+-.+-+.-.. +.||.+++..++|+|        +|     .    .+|+|+.|++|.||....
T Consensus       235 as~nA~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  235 ASPNAVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             cchhhccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence            98  322   3688888765555444 568999999999998        11     1    688999999999999977


Q ss_pred             CceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCC
Q 001352         1011 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1067 (1093)
Q Consensus      1011 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~ 1067 (1093)
                      .+.+..+.  ..     .+.  ..+.++|+| ||..|++++.||+|.+..+.+.+..
T Consensus       314 ~RPl~vi~--~l-----f~~--SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ElG  360 (942)
T KOG0973|consen  314 PRPLFVIH--NL-----FNK--SIVDMSWSP-DGFSLFACSLDGTVALIHFEEKELG  360 (942)
T ss_pred             CCchhhhh--hh-----hcC--ceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHhC
Confidence            66653332  11     112  235889999 6999999999999999999776653

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.1e-27  Score=218.94  Aligned_cols=284  Identities=17%  Similarity=0.247  Sum_probs=227.2

Q ss_pred             eeeeecC--CCceEEEEEc-----cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC-CC
Q 001352          339 MSMDFHP--VQHTLLLVGT-----NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GS  410 (1093)
Q Consensus       339 ~~~~~sp--dg~~llasg~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d-g~  410 (1093)
                      .++.|||  +++..+|++.     ..|++.|-++..++-+....  -+               .-.+.+..++||++ ..
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~--s~---------------d~~D~LfdV~Wse~~e~   74 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQ--SY---------------DTEDGLFDVAWSENHEN   74 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEE--ee---------------ecccceeEeeecCCCcc
Confidence            5789998  4553344443     25889999997555443211  11               14578999999995 56


Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  490 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~  490 (1093)
                      .+++++.||++++||+....  .++..++.|...|.++.|++..++ .+++++-|++|++|+...++.++++.+|...|+
T Consensus        75 ~~~~a~GDGSLrl~d~~~~s--~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy  151 (311)
T KOG0277|consen   75 QVIAASGDGSLRLFDLTMPS--KPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY  151 (311)
T ss_pred             eEEEEecCceEEEeccCCCC--cchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence            78889999999999965433  455578899999999999998776 677779999999999999999999999999999


Q ss_pred             EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCCCC-ee
Q 001352          491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEG-AI  568 (1093)
Q Consensus       491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~-~~  568 (1093)
                      ...|+|. ...++++++.||.+++||++.......+..|...+.++.|+.-. +.+++++.    ++.|+.||++.- .+
T Consensus       152 ~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p  226 (311)
T KOG0277|consen  152 QAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP  226 (311)
T ss_pred             EEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence            9999987 44699999999999999999988888899999999999999854 55566654    778999999864 45


Q ss_pred             eeeeecccccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc-eEEEEecCCCCCCCceEEEec-CCCEEEEEECCC
Q 001352          569 KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGGLPENPRICFNK-NGTLLAVIANEN  645 (1093)
Q Consensus       569 ~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg  645 (1093)
                      +..+.+|.   -.|..+.|+|.. ..|++++.|-+++|||...+. .+.+...|  ..-+..+.|++ ++.++|..+.|+
T Consensus       227 l~eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe  301 (311)
T KOG0277|consen  227 LFELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDE  301 (311)
T ss_pred             ceeecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeeccccc
Confidence            66777777   899999999975 567789999999999998543 44444444  34577788887 678999999999


Q ss_pred             eEEEEEc
Q 001352          646 RIKILET  652 (1093)
Q Consensus       646 ~i~iw~~  652 (1093)
                      .++||+.
T Consensus       302 ~l~Vw~p  308 (311)
T KOG0277|consen  302 LLYVWNP  308 (311)
T ss_pred             ceeeecc
Confidence            9999984

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3e-25  Score=215.85  Aligned_cols=272  Identities=16%  Similarity=0.187  Sum_probs=228.6

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC--CCcEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV  470 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~v  470 (1093)
                      +....+.|.++.|+++|.+|++++.|.++++||..+++.++   ++..+...|..++|.....  .++.++.  |.+|+.
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry   84 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY   84 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence            44567899999999999999999999999999999998776   6667777899999988877  4555554  889999


Q ss_pred             EECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001352          471 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  550 (1093)
Q Consensus       471 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~  550 (1093)
                      -++.+.+.++.|.||...|++++.+|.+  ..+++++.|++|++||++..++...+.....++  .+|.|.|-.+|++..
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~  160 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG  160 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence            9999999999999999999999998765  589999999999999999888777666555554  789999999998864


Q ss_pred             CCCCceeEEEEeCCCC--eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCC-c
Q 001352          551 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN-P  627 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~  627 (1093)
                          ...|.+||++.-  .+..++.-..........+.|+|||++++.+...+.+++.|.-+|..+..+..+.....+ .
T Consensus       161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~  236 (311)
T KOG1446|consen  161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL  236 (311)
T ss_pred             ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence                336999999863  344444443223467899999999999999999999999999999999988876543322 4


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEEcCCCceeeeccc-ccccceeeeecCCC
Q 001352          628 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPIS  677 (1093)
Q Consensus       628 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~  677 (1093)
                      ..+|+||++++++|+.||+|.+|+++++..+..+++ +..++.++.|+|..
T Consensus       237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~  287 (311)
T KOG1446|consen  237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY  287 (311)
T ss_pred             eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce
Confidence            678999999999999999999999999999999888 57788888887543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=4.8e-26  Score=213.89  Aligned_cols=252  Identities=16%  Similarity=0.241  Sum_probs=212.3

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +.+|...|.+++|+.+|.+||+|+.|+++.+|+++..+... .....+|.+.|-.++|.|.... .+++++.|++|++||
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-ELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD   93 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-hhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence            66799999999999999999999999999999999875433 3356799999999999998766 799999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      +.++++...+....+.++. +|  +++|.+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++...   
T Consensus        94 ~r~~k~~~~i~~~~eni~i-~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~---  166 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINI-TW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN---  166 (313)
T ss_pred             eccCcEEEEeeccCcceEE-EE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence            9999999988766555553 45  56778999999999999999987665544332 33567788887777766553   


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  632 (1093)
                       |.|+|.|.....-+++..++.|.   ....|+.|+|+|+++++|+.|-.+.+||++.--+++.+....  -+|..+.||
T Consensus       167 -GlG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld--wpVRTlSFS  240 (313)
T KOG1407|consen  167 -GLGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD--WPVRTLSFS  240 (313)
T ss_pred             -CCceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc--CceEEEEec
Confidence             36789998888889999999988   888999999999999999999999999999888888887553  469999999


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCCceee
Q 001352          633 KNGTLLAVIANENRIKILETPESNSVD  659 (1093)
Q Consensus       633 ~~~~~l~~~~~dg~i~iw~~~~~~~~~  659 (1093)
                      .||++||+++.|..|-|=++.++..+.
T Consensus       241 ~dg~~lASaSEDh~IDIA~vetGd~~~  267 (313)
T KOG1407|consen  241 HDGRMLASASEDHFIDIAEVETGDRVW  267 (313)
T ss_pred             cCcceeeccCccceEEeEecccCCeEE
Confidence            999999999999999988888775443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.7e-26  Score=246.06  Aligned_cols=279  Identities=18%  Similarity=0.266  Sum_probs=240.1

Q ss_pred             ceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc
Q 001352          338 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  417 (1093)
Q Consensus       338 V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~  417 (1093)
                      ..-++||..+  +||+|.. ..|.+|+..++.......                   -+...|+++.|+++|++||+|..
T Consensus       180 ~nlldWss~n--~laValg-~~vylW~~~s~~v~~l~~-------------------~~~~~vtSv~ws~~G~~LavG~~  237 (484)
T KOG0305|consen  180 LNLLDWSSAN--VLAVALG-QSVYLWSASSGSVTELCS-------------------FGEELVTSVKWSPDGSHLAVGTS  237 (484)
T ss_pred             hhHhhcccCC--eEEEEec-ceEEEEecCCCceEEeEe-------------------cCCCceEEEEECCCCCEEEEeec
Confidence            4457788665  4777653 579999999998664322                   24789999999999999999999


Q ss_pred             CCEEEEEEccCCCcccceEEecc-ccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE-eecCCCCeEEeeec
Q 001352          418 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPH  495 (1093)
Q Consensus       418 d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~  495 (1093)
                      +|.|.|||..+.+.++   .+.+ |...|-+++|..  .  .+.+|+.|+.|..+|+...+.... +.+|...|..+.|+
T Consensus       238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~~--~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws  310 (484)
T KOG0305|consen  238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWNS--S--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS  310 (484)
T ss_pred             CCeEEEEehhhccccc---cccCCcCceeEEEeccC--c--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence            9999999999887666   5667 999999999993  3  799999999999999998877655 88999999999995


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCCCeeeeeeec
Q 001352          496 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG  574 (1093)
Q Consensus       496 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~  574 (1093)
                        +|+.++++|+.|+.+.|||.........+..|...|..++|+| ....||+|+.  ..|++|++||..+|..+.....
T Consensus       311 --~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt  386 (484)
T KOG0305|consen  311 --PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT  386 (484)
T ss_pred             --CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence              5778999999999999999999999999999999999999999 4567777754  4588999999999999887765


Q ss_pred             ccccCCCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352          575 LQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  652 (1093)
Q Consensus       575 ~~~~~~~v~~v~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  652 (1093)
                      .    ..|..+.|++..+.+++  |..++.|.||+..+.+.+..+.+|.  ..|..++++|||..+++|+.|.++++|++
T Consensus       387 g----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  387 G----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             C----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccc
Confidence            3    57999999999877777  5577899999999988888888764  46999999999999999999999999998


Q ss_pred             CCC
Q 001352          653 PES  655 (1093)
Q Consensus       653 ~~~  655 (1093)
                      -..
T Consensus       461 f~~  463 (484)
T KOG0305|consen  461 FDE  463 (484)
T ss_pred             cCC
Confidence            764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=2.9e-26  Score=226.78  Aligned_cols=281  Identities=15%  Similarity=0.190  Sum_probs=233.7

Q ss_pred             CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCC-cEEEEEEcCCCcEEEEEC
Q 001352          395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDA  473 (1093)
Q Consensus       395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~l~s~~~d~~i~vwd~  473 (1093)
                      -|.+.|.++...  ++++++|+.||.+++||....    ....+.||.++|.+++|.-... .-.+++++.|.++++|-+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk----~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~  176 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK----SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW  176 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCCc----eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence            388999999887  889999999999999998863    2336789999999888843322 115999999999999998


Q ss_pred             CCCce----eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC-------------------------CCCceE
Q 001352          474 VTGSR----TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------------------------SLGARV  524 (1093)
Q Consensus       474 ~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-------------------------~~~~~~  524 (1093)
                      +.++.    ++.-+||...|.++..  .+++..+++|+.|.+|++|+..                         ...++.
T Consensus       177 ~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v  254 (423)
T KOG0313|consen  177 NVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV  254 (423)
T ss_pred             cCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence            87754    3444699999999987  5577899999999999999832                         122345


Q ss_pred             EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 001352          525 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  604 (1093)
Q Consensus       525 ~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~  604 (1093)
                      .+.+|..+|.++.|++ ...+++++.    |.+|+.||+.++..+..+.+.    ..+.++..+|..+.|++|+.|..++
T Consensus       255 tl~GHt~~Vs~V~w~d-~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~----ksl~~i~~~~~~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSD-ATVIYSVSW----DHTIKVWDLETGGLKSTLTTN----KSLNCISYSPLSKLLASGSSDRHIR  325 (423)
T ss_pred             EecccccceeeEEEcC-CCceEeecc----cceEEEEEeecccceeeeecC----cceeEeecccccceeeecCCCCcee
Confidence            6788899999999988 667778876    788999999999999888774    4899999999999999999999999


Q ss_pred             EEECCCCce---EEEEecCCCCCCCceEEEec-CCCEEEEEECCCeEEEEEcCCCc-eeeecccccccceeeeecCCCce
Q 001352          605 IWDMNKVQL---LTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLSVNPISTV  679 (1093)
Q Consensus       605 iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~  679 (1093)
                      +||.+++.-   ..++.+  +...|.++.|+| +...|++++.|+++++||+++.. ++..+.+|.+.|.++.|+     
T Consensus       326 l~DPR~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-----  398 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-----  398 (423)
T ss_pred             ecCCCCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-----
Confidence            999987642   234444  455799999999 55678899999999999999887 899999999999988886     


Q ss_pred             eeeeccCCceEecCCCCCCCccceeecccccceeccee
Q 001352          680 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  717 (1093)
Q Consensus       680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  717 (1093)
                                        ++..+++|+.|++++++...
T Consensus       399 ------------------~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  399 ------------------EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             ------------------CCceEEeccCcceEEEeccc
Confidence                              57789999999999998743

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.9e-26  Score=236.14  Aligned_cols=282  Identities=15%  Similarity=0.217  Sum_probs=230.9

Q ss_pred             cccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc
Q 001352          734 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  813 (1093)
Q Consensus       734 ~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  813 (1093)
                      ..+.|.+++|+|...+=++.+..-.+.+|+......                      ...  +.  .....+.++.|-.
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~----------------------~k~--~s--rFk~~v~s~~fR~   78 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV----------------------RKT--FS--RFKDVVYSVDFRS   78 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchhhh----------------------hhh--HH--hhccceeEEEeec
Confidence            456899999999877666666666777776433211                      110  00  1567889999999


Q ss_pred             CCCEEEEEeC-CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEE
Q 001352          814 NDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG  892 (1093)
Q Consensus       814 dg~~la~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~  892 (1093)
                      ||+++|.|++ |.|+|+|+.+...++.+.+|..++..+.|+|+++..+++|+.|+.+++||+.+......+.+|.+.|.|
T Consensus        79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~  158 (487)
T KOG0310|consen   79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC  158 (487)
T ss_pred             CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence            9999999985 999999988877888999999999999999999999999999999999999998877789999999999


Q ss_pred             EEEeCC-CCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCccee
Q 001352          893 LVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL  971 (1093)
Q Consensus       893 l~~s~d-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~  971 (1093)
                      .+|+|- +.+++|||.||.|++||+....   ........+     .+|..+.|-|.|..+|++..+.|+|||+.+|...
T Consensus       159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql  230 (487)
T KOG0310|consen  159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL  230 (487)
T ss_pred             eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence            999995 4589999999999999998732   122332222     3699999999999999999999999999977655


Q ss_pred             eeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEe
Q 001352          972 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1051 (1093)
Q Consensus       972 ~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~ 1051 (1093)
                      ......|...|+|+++..|++.|++++-|+.|++||+.+.+.+..+..    |.     +|  ++++.+| |++.+++|.
T Consensus       231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~----~~-----pv--Lsiavs~-dd~t~viGm  298 (487)
T KOG0310|consen  231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY----PG-----PV--LSIAVSP-DDQTVVIGM  298 (487)
T ss_pred             hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec----cc-----ce--eeEEecC-CCceEEEec
Confidence            544555999999999999999999999999999999999988877762    12     23  5677788 578999999


Q ss_pred             CCCcEEEEec
Q 001352         1052 TNGEVYVIEP 1061 (1093)
Q Consensus      1052 ~dg~v~~w~~ 1061 (1093)
                      .+|.+.+-+.
T Consensus       299 snGlv~~rr~  308 (487)
T KOG0310|consen  299 SNGLVSIRRR  308 (487)
T ss_pred             ccceeeeehh
Confidence            9999887744

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=7.6e-27  Score=239.23  Aligned_cols=307  Identities=18%  Similarity=0.234  Sum_probs=239.0

Q ss_pred             CchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE
Q 001352          322 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  401 (1093)
Q Consensus       322 ~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  401 (1093)
                      ..|..+-..|.+|+..|+++++.|.|-+ +++|+.|.+|++||......... .|+             .+.......|.
T Consensus       154 ~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr-------------~l~P~E~h~i~  218 (641)
T KOG0772|consen  154 LIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFR-------------QLQPCETHQIN  218 (641)
T ss_pred             cCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhh-------------ccCcccccccc
Confidence            3445555678899999999999999997 89999999999999976543321 111             12344567899


Q ss_pred             EEEECCCCCEEEEEEcCCEEEEEEccCCCc---------ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +++||+.|..|++.+.....+|+|-...+.         ++....-+||...++|.+|+|+.+. .++|++.||++||||
T Consensus       219 sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWd  297 (641)
T KOG0772|consen  219 SLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWD  297 (641)
T ss_pred             eeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEe
Confidence            999999999999999888999999765432         2233345699999999999999987 799999999999999


Q ss_pred             CCCCce-eEEee-----cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCC--ceEEEEEccC
Q 001352          473 AVTGSR-TYSFE-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGL--GCTRMAYSAN  541 (1093)
Q Consensus       473 ~~~~~~-~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~--~v~~~~~s~d  541 (1093)
                      +..-+. ++.++     +..-++++++|  ++|+.+|++|+.||.|.+|+........   .-..|..  .|++++||+|
T Consensus       298 v~~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d  375 (641)
T KOG0772|consen  298 VNNTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD  375 (641)
T ss_pred             cCCchhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc
Confidence            976543 33332     23456778888  5577899999999999999976543322   2334444  8999999999


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCCC-eeeeeeecccccCCCeEEEEEcCCCCEEEEEe------CCCcEEEEECCCCceE
Q 001352          542 GRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQLL  614 (1093)
Q Consensus       542 ~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~  614 (1093)
                      |++|++=+.    +..+++||++.. +++....+.. ...+-+.++|+|+.+.|++|.      ..|.+++||..+...+
T Consensus       376 g~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v  450 (641)
T KOG0772|consen  376 GNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV  450 (641)
T ss_pred             cchhhhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE
Confidence            999998765    677999999875 4455544433 124567789999999999975      4578999999999999


Q ss_pred             EEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352          615 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  653 (1093)
Q Consensus       615 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  653 (1093)
                      ..+...  ...|..+.|+|.-+.+.+++.||.+++|--.
T Consensus       451 ~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  451 YKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             EEecCC--CceEEEEeecchhhheeeecCCCceEEEECc
Confidence            988766  4568889999999999999999999997544

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=7.8e-26  Score=217.13  Aligned_cols=275  Identities=18%  Similarity=0.238  Sum_probs=219.5

Q ss_pred             CCCceeeeecCCCceEEEEEccCCcEEEEecCC-CceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352          335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  413 (1093)
Q Consensus       335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la  413 (1093)
                      .+.|.+++|||....+++.||-||+||+|+++. |....                  .....|.++|.+++|+.||..++
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskVf   88 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKVF   88 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceEE
Confidence            568999999996667888999999999999987 33332                  12556999999999999999999


Q ss_pred             EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEee
Q 001352          414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC  493 (1093)
Q Consensus       414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  493 (1093)
                      +|+.|+.+++||+.+++..    .+..|.++|.++.|-+...+..|+||+.|++|+.||.+...++.++. -...++++.
T Consensus        89 ~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~D  163 (347)
T KOG0647|consen   89 SGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAAD  163 (347)
T ss_pred             eeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehh
Confidence            9999999999999998533    46789999999999887665589999999999999999999998886 566777775


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC--eee
Q 001352          494 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIK  569 (1093)
Q Consensus       494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~  569 (1093)
                      .    -..+++.+..++.|.+|+++.........  .-.-.+++++..+|....+.|+.    +|++-+..+..+  +.-
T Consensus       164 v----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~n  235 (347)
T KOG0647|consen  164 V----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKDN  235 (347)
T ss_pred             c----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccCc
Confidence            4    22488999999999999997654433221  12336889999898888888876    556777766665  444


Q ss_pred             eeeeccccc------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEE
Q 001352          570 RTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  642 (1093)
Q Consensus       570 ~~~~~~~~~------~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  642 (1093)
                      -.|+.|...      -..|.+++|+|....|++++.||++.+||-.....+...+.+  ..+|++.+|+.+|.++|.+.
T Consensus       236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             eeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEEe
Confidence            556666521      135788999999999999999999999998877777665544  45699999999999888664

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=3.8e-26  Score=231.95  Aligned_cols=292  Identities=14%  Similarity=0.197  Sum_probs=234.6

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeec----ccccceeeeeeecCCCCCeEEEE
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI----GACSMLFKTALVRDPGVSVNRVV  404 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~v~  404 (1093)
                      +.+..|.-.|.|++++||+++ ..+++.+|+|.=|++.+|+....    +|.-    ..-..+++..- .+|...|.+++
T Consensus       136 ~~~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~a  209 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLA  209 (479)
T ss_pred             eeeccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEE
Confidence            455678889999999999996 89999999999999999986531    1211    11122333222 48999999999


Q ss_pred             ECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec
Q 001352          405 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  484 (1093)
Q Consensus       405 ~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  484 (1093)
                      .|+||+|||+|+.|..|.||+..+.+.++   .+.+|.+.|.+++|-....  -+++++.|.+|++|+++....+.++-+
T Consensus       210 vS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyG  284 (479)
T KOG0299|consen  210 VSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYG  284 (479)
T ss_pred             EcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhC
Confidence            99999999999999999999999988776   6889999999999987766  589999999999999999999999999


Q ss_pred             CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352          485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  564 (1093)
Q Consensus       485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~  564 (1093)
                      |...|..+....  -+..+-+|+.|+++++|++ ..+....+.++.+.+.|++|-.+ ..+++|+.    +|.|.+|++.
T Consensus       285 Hqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~  356 (479)
T KOG0299|consen  285 HQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLL  356 (479)
T ss_pred             Cccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeec
Confidence            999999987643  3345666669999999999 45566677888889999999755 46677765    6779999999


Q ss_pred             CCeeeeeeeccc-cc--------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEecCCCCCCCceEEE
Q 001352          565 EGAIKRTYQGLQ-LQ--------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRICF  631 (1093)
Q Consensus       565 ~~~~~~~~~~~~-~~--------~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~  631 (1093)
                      ..+++.+....+ ..        ...|++++..|..+.+++|+.+|.|++|-+..+    .++..++..   ..|++++|
T Consensus       357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~f  433 (479)
T KOG0299|consen  357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLAF  433 (479)
T ss_pred             ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEEE
Confidence            988876654321 11        127899999999999999999999999999887    344444433   45899999


Q ss_pred             ecCCCEEEEEE
Q 001352          632 NKNGTLLAVIA  642 (1093)
Q Consensus       632 s~~~~~l~~~~  642 (1093)
                      +++|+.+++|.
T Consensus       434 ~~sgk~ivagi  444 (479)
T KOG0299|consen  434 SNSGKRIVAGI  444 (479)
T ss_pred             ccCCCEEEEec
Confidence            99999777663

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.1e-25  Score=217.14  Aligned_cols=313  Identities=13%  Similarity=0.157  Sum_probs=235.5

Q ss_pred             eeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccc
Q 001352          658 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK  737 (1093)
Q Consensus       658 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  737 (1093)
                      +..+++|...|++++|+                      .||+++++++.|++|++|++..-....-..++..  ...+.
T Consensus        79 ~~~LKgH~~~vt~~~Fs----------------------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dh  134 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFS----------------------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDH  134 (420)
T ss_pred             hhhhhccCCceeeeEEc----------------------CCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCC
Confidence            34678999999999996                      7899999999999999999764332222222221  13346


Q ss_pred             eEEEEeecCCceEEEeecc-ceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCC
Q 001352          738 ISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  816 (1093)
Q Consensus       738 i~~l~~s~~g~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  816 (1093)
                      .+.++|+||-+.++..... ..+++|.+.....   |....  ...-||-..        ++ .-|...+..+-...+++
T Consensus       135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~--~~v~~D~~~--------f~-~kh~v~~i~iGiA~~~k  200 (420)
T KOG2096|consen  135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSH--HFVHIDNLE--------FE-RKHQVDIINIGIAGNAK  200 (420)
T ss_pred             ceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCc--ccccccccc--------cc-hhcccceEEEeecCCce
Confidence            7889999998877766554 6899998765432   11111  111122100        00 12677788888889999


Q ss_pred             EEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC---Cc-----ceeeeccccc
Q 001352          817 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR---SS-----EVISKLEGHS  887 (1093)
Q Consensus       817 ~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~---~~-----~~~~~l~~h~  887 (1093)
                      +|++++ |..|.+|++. |+.+..+......-+..+.|| +|++||+++..-.|++|.+-   .|     ..+-.|+||.
T Consensus       201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~  278 (420)
T KOG2096|consen  201 YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ  278 (420)
T ss_pred             EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence            999998 6789999998 999988887777788899999 99999999999999999974   22     2345688999


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceee--eeeeecCCCc-ccCCCCceEEEEccCCCEEEEEeCCeEEEEE
Q 001352          888 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT--CRSLQTPDGV-MTLAPSETHIQFHKDQTRFLLVHETHLAIYE  964 (1093)
Q Consensus       888 ~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd  964 (1093)
                      ..|..++||++...++|.|.||+++|||.+-.....  ...++..... ...+.....++.||.|+.||++....+++|.
T Consensus       279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~  358 (420)
T KOG2096|consen  279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFA  358 (420)
T ss_pred             hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence            999999999999999999999999999987432111  1122222111 1111234589999999999999999999999


Q ss_pred             cCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001352          965 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus       965 ~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
                      .++|+....+...|...|+++.|++||++++|++ |+.+++..-..|
T Consensus       359 se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg  404 (420)
T KOG2096|consen  359 SEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG  404 (420)
T ss_pred             cccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence            9999988887888999999999999999999997 788998864333

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=9.4e-25  Score=245.60  Aligned_cols=237  Identities=10%  Similarity=0.095  Sum_probs=185.0

Q ss_pred             ecCCCCCeEEEEECCC-CCEEEEEEcCCEEEEEEccCCCc-c----cceEEeccccccEEEEEeeCCCCcEEEEEEcCCC
Q 001352          393 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  466 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~d-g~~las~~~d~~i~iwd~~~~~~-~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~  466 (1093)
                      +.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. .    .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus        70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg  148 (568)
T PTZ00420         70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS  148 (568)
T ss_pred             EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence            7899999999999997 79999999999999999986432 1    122357789999999999999874 568999999


Q ss_pred             cEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE-----EEEccC
Q 001352          467 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-----MAYSAN  541 (1093)
Q Consensus       467 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~-----~~~s~d  541 (1093)
                      +|+|||+.+++.+..+. |...|.+++|++  +|.+|++++.|+.|++||++++.....+..|.+.+..     ..|+++
T Consensus       149 tIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d  225 (568)
T PTZ00420        149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD  225 (568)
T ss_pred             eEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence            99999999999888776 667899999965  6789999999999999999999888888888765432     345689


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 001352          542 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  620 (1093)
Q Consensus       542 ~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  620 (1093)
                      +.++++++.++..++.|++||++. ++++..+..+. +.+.+......+++.++++|+.|++|++|++..+. +..+...
T Consensus       226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~  303 (568)
T PTZ00420        226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY  303 (568)
T ss_pred             CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc
Confidence            999999887654456899999985 55555543322 12333344445568888899999999999998764 3334333


Q ss_pred             CCCCCCceEEEecCC
Q 001352          621 GGLPENPRICFNKNG  635 (1093)
Q Consensus       621 ~~~~~v~~v~~s~~~  635 (1093)
                      ....++.+++|.|..
T Consensus       304 ~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        304 KSCSPFRSFGFLPKQ  318 (568)
T ss_pred             ccCCCccceEEcccc
Confidence            344567889999854

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.1e-26  Score=248.50  Aligned_cols=277  Identities=14%  Similarity=0.198  Sum_probs=212.1

Q ss_pred             ccccceEEEEeecCCceEEEeeccceeEEeeecCccc------C------------------cCc-cccc---------c
Q 001352          733 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL------T------------------LST-EATT---------K  778 (1093)
Q Consensus       733 ~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~------~------------------~~~-~~~~---------~  778 (1093)
                      .|.+.|.++.||+||++|++++.||.|+||.+.....      .                  ... ....         .
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            4899999999999999999999999999999876211      0                  000 0000         0


Q ss_pred             cCCcccCCCCCCceeecc-CCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCC
Q 001352          779 VPPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN  857 (1093)
Q Consensus       779 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~  857 (1093)
                      ....+.+..... +.... ....||...|..+.||.++-+|-+.-|.+|++|++...++++.|. |...|+|++|+|-|.
T Consensus       345 s~~~~~p~~~f~-f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD  422 (712)
T KOG0283|consen  345 SPCVLLPLKAFV-FSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD  422 (712)
T ss_pred             CccccCCCcccc-ccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence            000001100000 00000 012369999999999988755544449999999999999999998 999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCC
Q 001352          858 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  937 (1093)
Q Consensus       858 ~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  937 (1093)
                      +|+++|+-||.|+||++...+++.-..-+ .-|++++|+|||+..+.|+.+|.+++|+....+......+....+.....
T Consensus       423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~  501 (712)
T KOG0283|consen  423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG  501 (712)
T ss_pred             CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence            99999999999999999987776555544 77999999999999999999999999999987766655555554444434


Q ss_pred             CCceEEEEccCCC--EEEEEeCCeEEEEEcCCcceeeeeecCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001352          938 PSETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1012 (1093)
Q Consensus       938 ~~v~~~~~s~dg~--~l~~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~ 1012 (1093)
                      ..|+.+.|.|...  .|+++.|..|+|||..+...+..+...| ...-....|+.||++|+++++|..|++|+.+...
T Consensus       502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            5799999998654  7888999999999998888877755444 3334567899999999999999999999985543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.2e-23  Score=231.54  Aligned_cols=571  Identities=12%  Similarity=0.113  Sum_probs=350.6

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCc-EEEEEEcCCCcEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVW  471 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~-l~l~s~~~d~~i~vw  471 (1093)
                      +.|-...-..-.||+|+++++.+..+ .|.||...+|.++.   .+.+|..+++.+.+.|.... .++.+++.||.|++|
T Consensus        12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw   87 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW   87 (792)
T ss_pred             eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence            33333334446699999999887655 69999999999887   78899999999999887663 478899999999999


Q ss_pred             ECCCCceeEEeecCCCCeEEeeeccc-CCccEEE-EEecCC------------eEEEEEcCCCCce-EEecCCCCceEEE
Q 001352          472 DAVTGSRTYSFEGHGAPVYSLCPHAK-ENIHFIF-SISVDG------------KIKAWLYDSLGAR-VDYDAPGLGCTRM  536 (1093)
Q Consensus       472 d~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~-s~~~dg------------~i~vwd~~~~~~~-~~~~~~~~~v~~~  536 (1093)
                      |...+..++++..+. ++..+.+.+. -+....+ ....|.            .++-+.+.+.... ..+......-.++
T Consensus        88 d~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I  166 (792)
T KOG1963|consen   88 DWSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI  166 (792)
T ss_pred             cCCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence            999999998886433 2332222110 0000111 111111            1111111111000 0000001113567


Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeee-eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--Cce
Q 001352          537 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQL  613 (1093)
Q Consensus       537 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~--~~~  613 (1093)
                      .+++.|.+.+.+.     +..+.+|+...+... .....+..|...+.+.+++|++++++++..||.|.+|.--.  +..
T Consensus       167 ~~~~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~  241 (792)
T KOG1963|consen  167 VDNNSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS  241 (792)
T ss_pred             EEcCCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence            8888888877765     445888888775511 11111222335689999999999999999999999996433  222


Q ss_pred             EEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecC
Q 001352          614 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  693 (1093)
Q Consensus       614 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1093)
                      ...-..|-+...|.+++|+++|.+|++|+..|.+.+|.+.++.. +-+.                               
T Consensus       242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLP-------------------------------  289 (792)
T KOG1963|consen  242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLP-------------------------------  289 (792)
T ss_pred             ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-cccc-------------------------------
Confidence            22122233345699999999999999999999999999987741 1111                               


Q ss_pred             CCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCc
Q 001352          694 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST  773 (1093)
Q Consensus       694 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~  773 (1093)
                                                           .  -.+.|..+.+|||+...+....|+.+.+-..+.-...   
T Consensus       290 -------------------------------------R--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k---  327 (792)
T KOG1963|consen  290 -------------------------------------R--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK---  327 (792)
T ss_pred             -------------------------------------c--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh---
Confidence                                                 1  2356788888999998888888888887665322110   


Q ss_pred             ccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccC-CCEEEEEeCCeEEEEEccCceeEEEEC-----CCC---
Q 001352          774 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSASGGVISLYIVMTFKTILTIM-----PPS---  844 (1093)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~la~~~dg~i~iwd~~~~~~~~~~~-----~~~---  844 (1093)
                           .++.-..+.+..      . ......-.+.++++|. +..+.-+-.|.|++||+.+.+.+..+.     .+.   
T Consensus       328 -----~tIsgi~~~~~~------~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~  395 (792)
T KOG1963|consen  328 -----STISGIKPPTPS------T-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDV  395 (792)
T ss_pred             -----hhccCccCCCcc------c-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcc
Confidence                 011111111000      0 0013455677888994 444444447999999998877765543     122   


Q ss_pred             ---CCeEEEEEcCCCCCEEEEEe--------CCC--eEEEEEcCCcce----ee-ecccccCCeEEEEEeCC-C-CEEEE
Q 001352          845 ---PTATSLAFNPHDNNVIAIGM--------DDS--TILIYNARSSEV----IS-KLEGHSKRVTGLVFSDA-L-NILVS  904 (1093)
Q Consensus       845 ---~~i~~l~~s~~d~~~lasg~--------~dg--~i~iwd~~~~~~----~~-~l~~h~~~V~~l~~s~d-g-~~l~s  904 (1093)
                         -.+++++.+. .|.+++|+-        .||  .+++|-......    .. ....|...+...+|.+. . .++++
T Consensus       396 n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vt  474 (792)
T KOG1963|consen  396 NIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVT  474 (792)
T ss_pred             eeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEE
Confidence               2578888888 699999863        333  677887764332    22 22458877777666542 2 37999


Q ss_pred             EeCCCcEEEEeCCCCceee-----eeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCC
Q 001352          905 SGGDAQIFVWDVDGWGIQT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISS  979 (1093)
Q Consensus       905 ~s~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~  979 (1093)
                      ++.||.++||-+.+.+...     ..+.....-+.   ..+++++||.||..|+++.+++|.+||..+...+........
T Consensus       475 a~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~  551 (792)
T KOG1963|consen  475 ASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRN  551 (792)
T ss_pred             eccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccc
Confidence            9999999999995432111     12222221122   368999999999999999999999999988433222222223


Q ss_pred             CCEEEEEEcc----CCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCC------CCCCccceeEEEeCCCCCCEEE-
Q 001352          980 VPISQATFSC----DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT------TSCLHVYPHAIAAHPLKPTQFA- 1048 (1093)
Q Consensus       980 ~~v~~~~fs~----dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~p~d~~~l~- 1048 (1093)
                      .++..+.|..    ++..  .....+.+.+|++-+..+...+.........      .....+-+..+++-+..+..+. 
T Consensus       552 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~~f~vi~~~p~~~~~  629 (792)
T KOG1963|consen  552 WPIAELLFTAQTQNDGAL--VHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGSTAFAVICWLPELLLV  629 (792)
T ss_pred             cchHhHhhhcccccccce--eeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCccceEEEeecccchhh
Confidence            3444444433    4432  2335678999999998887643322222220      0011122222222221122333 


Q ss_pred             -------EEeCCCcEEEEecCCCC
Q 001352         1049 -------VGLTNGEVYVIEPNEPG 1065 (1093)
Q Consensus      1049 -------~~~~dg~v~~w~~~~~~ 1065 (1093)
                             +.+.|+.|.+|+...+.
T Consensus       630 ~k~~~~~f~~~~~ril~F~~~~pk  653 (792)
T KOG1963|consen  630 VKSIEQIFRGRDSRILIFSGDSPK  653 (792)
T ss_pred             hhhhhhhcccccceEEEecCCCch
Confidence                   67788888888875544

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=8.9e-27  Score=232.88  Aligned_cols=285  Identities=18%  Similarity=0.248  Sum_probs=241.3

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+++.|.++++  .+++++.|+.+++|+
T Consensus       171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN  247 (459)
T ss_pred             hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence            66799999999999999999999999999999998876 333446788889999999999999  788999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      +..++..+++.+|...|+++.|....  ..+++|+.|.+|+.||+....+..++. +...+..+..+  ...++++..  
T Consensus       248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~--  320 (459)
T KOG0288|consen  248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF--  320 (459)
T ss_pred             ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence            99999999999999999999986543  349999999999999999866554433 23345555554  445666655  


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC--CCCCceEE
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC  630 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~  630 (1093)
                        +..|+.||.++..+......+    +.|.++..++++..+++.+.|.++.+.|+.+.+....+...+.  ....+.+.
T Consensus       321 --DkkvRfwD~Rs~~~~~sv~~g----g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv  394 (459)
T KOG0288|consen  321 --DKKVRFWDIRSADKTRSVPLG----GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV  394 (459)
T ss_pred             --ccceEEEeccCCceeeEeecC----cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence              566999999999998888774    4899999999999999999999999999999998888765432  23478899


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCCceeeeccccccc--ceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352          631 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  708 (1093)
Q Consensus       631 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  708 (1093)
                      |||++.|+++|+.||.|+||++.+++....+......  |+++.|+                      |.|..+++++.+
T Consensus       395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~----------------------~sG~~Llsadk~  452 (459)
T KOG0288|consen  395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN----------------------PSGSGLLSADKQ  452 (459)
T ss_pred             ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc----------------------CCCchhhcccCC
Confidence            9999999999999999999999999888877766555  8888887                      568889999999


Q ss_pred             ccceecc
Q 001352          709 NKSEVEK  715 (1093)
Q Consensus       709 ~~i~~w~  715 (1093)
                      +.+.+|.
T Consensus       453 ~~v~lW~  459 (459)
T KOG0288|consen  453 KAVTLWT  459 (459)
T ss_pred             cceEecC
Confidence            9999984

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=8e-27  Score=229.06  Aligned_cols=294  Identities=11%  Similarity=0.159  Sum_probs=236.0

Q ss_pred             HHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352          325 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  404 (1093)
Q Consensus       325 ~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  404 (1093)
                      ++.+..|.||.+.|.|++=+|..-..+|+|+.||.|+|||+.+.+++..                   +..|.+.|..++
T Consensus        56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~  116 (433)
T KOG0268|consen   56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGIC  116 (433)
T ss_pred             ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEE
Confidence            4556778999999999999999844699999999999999999888765                   667999999999


Q ss_pred             ECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec
Q 001352          405 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  484 (1093)
Q Consensus       405 ~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  484 (1093)
                      +..  ..+++++.|.+|+.|.++.. .++   ++.+ ...+..+.-+..+.  .++|+|.+  |.|||.....+++++.-
T Consensus       117 v~~--~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe~--i~IWD~~R~~Pv~smsw  185 (433)
T KOG0268|consen  117 VTQ--TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGEQ--IDIWDEQRDNPVSSMSW  185 (433)
T ss_pred             ecc--cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCce--eeecccccCCccceeec
Confidence            987  77889999999999998873 222   3332 33466666666666  78898876  99999999999999988


Q ss_pred             CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352          485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  564 (1093)
Q Consensus       485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~  564 (1093)
                      ....|.++.|+|... ..|++++.|+.|.+||++...++...... ..-+.++|+|.+-.++++..    |..++.+|++
T Consensus       186 G~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~E----D~nlY~~DmR  259 (433)
T KOG0268|consen  186 GADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANE----DHNLYTYDMR  259 (433)
T ss_pred             CCCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccc----cccceehhhh
Confidence            888899999987654 57888889999999999988876644322 23467899996666666654    7789999987


Q ss_pred             CC-eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC
Q 001352          565 EG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  643 (1093)
Q Consensus       565 ~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  643 (1093)
                      .- .++..+.+|.   ..|..+.|+|.|+-+++||.|.+|+||..+.+......... ....|.++.||.|.+++++|++
T Consensus       260 ~l~~p~~v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSd  335 (433)
T KOG0268|consen  260 NLSRPLNVHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSD  335 (433)
T ss_pred             hhcccchhhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCC
Confidence            53 4455666665   89999999999999999999999999999876654333221 1245899999999999999999


Q ss_pred             CCeEEEEEcCCCcee
Q 001352          644 ENRIKILETPESNSV  658 (1093)
Q Consensus       644 dg~i~iw~~~~~~~~  658 (1093)
                      |+.|++|.....+.+
T Consensus       336 d~nvRlWka~Asekl  350 (433)
T KOG0268|consen  336 DGNVRLWKAKASEKL  350 (433)
T ss_pred             Ccceeeeecchhhhc
Confidence            999999998755433

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=1.2e-25  Score=230.65  Aligned_cols=297  Identities=17%  Similarity=0.231  Sum_probs=223.1

Q ss_pred             ccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc
Q 001352          733 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  812 (1093)
Q Consensus       733 ~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  812 (1093)
                      +|...|.++++.|.|.++++|+-|..+++||++.-...          .+-        ....   .......|.++.||
T Consensus       165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------~~~--------fr~l---~P~E~h~i~sl~ys  223 (641)
T KOG0772|consen  165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------MRS--------FRQL---QPCETHQINSLQYS  223 (641)
T ss_pred             CCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------chh--------hhcc---Ccccccccceeeec
Confidence            47888999999999999999999999999998753221          000        0000   11256678999999


Q ss_pred             cCCCEEEEEe-CCeEEEEEccCceeEE------------EECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc-
Q 001352          813 KNDAYLFSAS-GGVISLYIVMTFKTIL------------TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-  878 (1093)
Q Consensus       813 ~dg~~la~~~-dg~i~iwd~~~~~~~~------------~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~-  878 (1093)
                      +.|..|++.+ ....+|+|-.......            .-++|...++|.+|+|.....+.+++.||+++|||+...+ 
T Consensus       224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~  303 (641)
T KOG0772|consen  224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS  303 (641)
T ss_pred             CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence            9998888777 5779999976443332            2357888999999999878899999999999999998653 


Q ss_pred             eeeecc-----cccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEE
Q 001352          879 VISKLE-----GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL  953 (1093)
Q Consensus       879 ~~~~l~-----~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  953 (1093)
                      .+..++     +-.-+++.++|++||+++|.|+.||.|.+|+..+.....  .+.....|.. +..|++++||+||++|+
T Consensus       304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~Ll  380 (641)
T KOG0772|consen  304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLL  380 (641)
T ss_pred             heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhh
Confidence            222222     344578999999999999999999999999985533222  2222233321 13699999999999999


Q ss_pred             E-EeCCeEEEEEcCCcceeeeeecC--CCCCEEEEEEccCCCEEEEEeC------CCcEEEEEcCCCceEEEeccccccC
Q 001352          954 L-VHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFV------DGTLSIHEASNLEVQCRILSTAYLR 1024 (1093)
Q Consensus       954 ~-~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~~~fs~dg~~l~t~~~------dg~v~vwd~~~~~~~~~~~~~~~~~ 1024 (1093)
                      + |.|++++|||+...+.......+  ...+-+.++||||.++|+||+.      .|.+.+||..+...+.++....   
T Consensus       381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~---  457 (641)
T KOG0772|consen  381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST---  457 (641)
T ss_pred             hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC---
Confidence            9 99999999999876533222222  2456678999999999999874      4789999999999998887331   


Q ss_pred             CCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEE-EecCCC
Q 001352         1025 PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV-IEPNEP 1064 (1093)
Q Consensus      1025 ~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~-w~~~~~ 1064 (1093)
                             .....+.||| .-+.+.+|+.||++++ ||...+
T Consensus       458 -------aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S  490 (641)
T KOG0772|consen  458 -------ASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNES  490 (641)
T ss_pred             -------ceEEEEeecc-hhhheeeecCCCceEEEECcccc
Confidence                   2334688999 4788999999999987 455443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=1.4e-25  Score=238.74  Aligned_cols=283  Identities=18%  Similarity=0.298  Sum_probs=240.0

Q ss_pred             HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEE-EEE
Q 001352          327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VVW  405 (1093)
Q Consensus       327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~~  405 (1093)
                      +.+.|.||+..|..+++.++..  +++++.||++++|+-..++.+....                 +.+|.+-|.+ ++|
T Consensus         6 ls~~l~gH~~DVr~v~~~~~~~--i~s~sRd~t~~vw~~~~~~~l~~~~-----------------~~~~~g~i~~~i~y   66 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDGVC--IISGSRDGTVKVWAKKGKQYLETHA-----------------FEGPKGFIANSICY   66 (745)
T ss_pred             eEEEeccCccchheeEecCCeE--EeecCCCCceeeeeccCccccccee-----------------cccCcceeecccee
Confidence            3457889999999999988873  8899999999999987766654322                 5568888877 888


Q ss_pred             CC-CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec
Q 001352          406 SP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  484 (1093)
Q Consensus       406 s~-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  484 (1093)
                      -+ ++-+|++|+.|.+|.+|...+...+.   .+.+|...|++++...++.   ++|||.|.++++|-  .+++...+.+
T Consensus        67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~g  138 (745)
T KOG0301|consen   67 AESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQG  138 (745)
T ss_pred             ccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCC
Confidence            75 56679999999999999999987666   7889999999999888775   89999999999994  5777788999


Q ss_pred             CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352          485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  564 (1093)
Q Consensus       485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~  564 (1093)
                      |+..|++++..+..   .+++|+.|.+|++|.  .++...++.+|..-|+.+++-+++.+ ++|+.    |+.|++|++ 
T Consensus       139 H~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~f-lScsN----Dg~Ir~w~~-  207 (745)
T KOG0301|consen  139 HTASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHF-LSCSN----DGSIRLWDL-  207 (745)
T ss_pred             cchheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCe-EeecC----CceEEEEec-
Confidence            99999999886543   899999999999994  46788899999999999999887654 55554    778999998 


Q ss_pred             CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC
Q 001352          565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  644 (1093)
Q Consensus       565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  644 (1093)
                      +|+.+..+.+|.   .-++++....++..++++++|++++||+..  ++.+.+.....  .|+++.+-++|. +++|+.|
T Consensus       208 ~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SD  279 (745)
T KOG0301|consen  208 DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSD  279 (745)
T ss_pred             cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccC
Confidence            899999999998   889999988888999999999999999976  77777776543  488888888886 7788899


Q ss_pred             CeEEEEEcCCC
Q 001352          645 NRIKILETPES  655 (1093)
Q Consensus       645 g~i~iw~~~~~  655 (1093)
                      |.|+||.....
T Consensus       280 G~VrVfT~~k~  290 (745)
T KOG0301|consen  280 GRVRVFTVDKD  290 (745)
T ss_pred             ceEEEEEeccc
Confidence            99999998744

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=6e-26  Score=239.55  Aligned_cols=352  Identities=18%  Similarity=0.213  Sum_probs=261.5

Q ss_pred             CCCCce---eeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352          334 GSSSPM---SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  410 (1093)
Q Consensus       334 h~~~V~---~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~  410 (1093)
                      |...|.   .+..++.+.+.|.+|+.||.|++|++..-.......             -...+..|.+.|..++...+|+
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-------------~~asme~HsDWVNDiiL~~~~~   86 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-------------YIASMEHHSDWVNDIILCGNGK   86 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc-------------hhhhhhhhHhHHhhHHhhcCCC
Confidence            444555   555564444459999999999999986543321100             0112667999999999999999


Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEe-eCCCCcEEEEEEcCCCcEEEEECCCC--ceeEE------
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTG--SRTYS------  481 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~-s~d~~~l~l~s~~~d~~i~vwd~~~~--~~~~~------  481 (1093)
                      .|+++|.|-+|++|+...+. .....++..|.+.|.|+++ .++..  ++|+||-|+.|.+||+.+|  +.+.+      
T Consensus        87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~  163 (735)
T KOG0308|consen   87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV  163 (735)
T ss_pred             ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence            99999999999999999874 1223367889999999999 66666  8999999999999999988  33332      


Q ss_pred             --ee-cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352          482 --FE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  558 (1093)
Q Consensus       482 --~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i  558 (1093)
                        +. |+...|++++..  +.|..+++|+..+.+++||.++...+..+.+|...|..+..++||+.+++++.    |++|
T Consensus       164 ~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtI  237 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTI  237 (735)
T ss_pred             ccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceE
Confidence              23 788899999874  45679999999999999999999999999999999999999999999999987    7889


Q ss_pred             EEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEE
Q 001352          559 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL  638 (1093)
Q Consensus       559 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  638 (1093)
                      ++||+...+++.++..|.   ..|.++..+|+-..+++|+.||.|+.=|+.+......+-...  .+|..+..+...+-+
T Consensus       238 rlWdLgqQrCl~T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~~  312 (735)
T KOG0308|consen  238 RLWDLGQQRCLATYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNSV  312 (735)
T ss_pred             EeeeccccceeeeEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCCc
Confidence            999999999999999988   779999999999999999999999999998853333332221  346777777655556


Q ss_pred             EEEECCCeEEEEEcCCCceeeecccccc-------cceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccc
Q 001352          639 AVIANENRIKILETPESNSVDAAGVLSD-------NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  711 (1093)
Q Consensus       639 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i  711 (1093)
                      -+++.|+.|+-|.......+........       .+.+....|....- .|.......+    ..|.+++++-...|.+
T Consensus       313 WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~-Gg~ai~k~~m----L~dkRhVlTkDa~gnv  387 (735)
T KOG0308|consen  313 WVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIP-GGAAIKKHAM----LNDKRHVLTKDAKGNV  387 (735)
T ss_pred             eeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceecc-Cchhhhhhhh----hcCcceEeeecCCCCE
Confidence            7888899999998764432221111111       11111111111100 0000001111    4678899999999999


Q ss_pred             eeccee
Q 001352          712 EVEKPL  717 (1093)
Q Consensus       712 ~~w~~~  717 (1093)
                      .+||+-
T Consensus       388 ~lwDIl  393 (735)
T KOG0308|consen  388 ALWDIL  393 (735)
T ss_pred             EEEEee
Confidence            999965

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=1.2e-24  Score=244.63  Aligned_cols=270  Identities=17%  Similarity=0.201  Sum_probs=210.5

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCc----------ccceEEeccccccEEEEEeeC-CCCcEEEEEEcC
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD----------ARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD  464 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~----------~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~  464 (1093)
                      |-..|.....++|+..+++++.+.....|+...+..          ......+.+|.+.|++++|+| +++  +|++|+.
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~   96 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE   96 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence            445666777778877777777777777777654422          121224779999999999999 777  8999999


Q ss_pred             CCcEEEEECCCC-------ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001352          465 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  537 (1093)
Q Consensus       465 d~~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  537 (1093)
                      |++|++||+.++       ..+..+.+|...|.+++|+|.. +.+|++++.|++|++||+.++.....+..|...|.+++
T Consensus        97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla  175 (493)
T PTZ00421         97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE  175 (493)
T ss_pred             CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence            999999999765       3567889999999999998753 35899999999999999999888888888999999999


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe----CCCcEEEEECCCCc-
Q 001352          538 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ-  612 (1093)
Q Consensus       538 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~----~dg~i~iwd~~~~~-  612 (1093)
                      |+|+|.+|++++.    ++.|++||+++++.+..+.+|.  ......+.|.+++..+++++    .|+.|++||+++.. 
T Consensus       176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~  249 (493)
T PTZ00421        176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS  249 (493)
T ss_pred             EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence            9999999999986    7779999999999988888876  23355678899888888754    47999999998754 


Q ss_pred             eEEEEecCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCceeeeccc-ccccceeeeecC
Q 001352          613 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP  675 (1093)
Q Consensus       613 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~  675 (1093)
                      .+.....+. ...+....|+++++++++++ .|+.|++|++.++..+..... ...++.++++.|
T Consensus       250 p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p  313 (493)
T PTZ00421        250 PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP  313 (493)
T ss_pred             ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence            333333222 23355667899999999887 599999999998876654432 333455555554

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4.5e-25  Score=211.96  Aligned_cols=275  Identities=16%  Similarity=0.167  Sum_probs=217.6

Q ss_pred             cCCCCCeEEEEECC-CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          394 RDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       394 ~~h~~~V~~v~~s~-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      ...++.|.+++||| ...+++++|.|++|++|+++....... .....|.++|.+++|+.||.  .+++|+.|+.+++||
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD  100 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence            34678999999999 556666889999999999987422222 24567999999999999998  799999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      +.+++ +..+..|.++|.++.|.+..+-..|++||.|++|++||.+...++..+..++ .+.++..  -..+++++..  
T Consensus       101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata--  174 (347)
T KOG0647|consen  101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA--  174 (347)
T ss_pred             ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec--
Confidence            99995 5567789999999999877777799999999999999999988888777665 3333332  2334555554  


Q ss_pred             CCceeEEEEeCCCCeee-eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEecCCC-------
Q 001352          553 EGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGG-------  622 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------  622 (1093)
                        +..|.+|+++.+... +.....-  +..+++++..++....+.|+-+|.+-|..+..+  +.-.++..|..       
T Consensus       175 --~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~  250 (347)
T KOG0647|consen  175 --ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD  250 (347)
T ss_pred             --CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence              555999999766432 2222222  356889999999888899999999999998876  33344444432       


Q ss_pred             CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceee
Q 001352          623 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG  681 (1093)
Q Consensus       623 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  681 (1093)
                      ...|++++|+|....|++++.||++.+||-.....+.....+..+|++..|+.++...+
T Consensus       251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifa  309 (347)
T KOG0647|consen  251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFA  309 (347)
T ss_pred             eEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEE
Confidence            34578899999999999999999999999998888888899999999999986665543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4e-24  Score=195.88  Aligned_cols=304  Identities=14%  Similarity=0.153  Sum_probs=225.5

Q ss_pred             cccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc
Q 001352          734 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  813 (1093)
Q Consensus       734 ~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  813 (1093)
                      ....|.+++|.|.|...++++...++++-.++.-.....+......++.+.         .  -....|.+.|.|.+|||
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~---------~--kr~khhkgsiyc~~ws~   99 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVL---------C--KRNKHHKGSIYCTAWSP   99 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEE---------e--eeccccCccEEEEEecC
Confidence            566899999999999999999999999877654321111111111111110         0  01124899999999999


Q ss_pred             CCCEEEEEe-CCeEEEEEccCcee-----EEEECCCCCCeEEEEEcCC---CCCEEEEEe-CCCeEEEEEcCCcceeeec
Q 001352          814 NDAYLFSAS-GGVISLYIVMTFKT-----ILTIMPPSPTATSLAFNPH---DNNVIAIGM-DDSTILIYNARSSEVISKL  883 (1093)
Q Consensus       814 dg~~la~~~-dg~i~iwd~~~~~~-----~~~~~~~~~~i~~l~~s~~---d~~~lasg~-~dg~i~iwd~~~~~~~~~l  883 (1093)
                      +|+++|+|+ |.+|++..+....+     -..+.-|.+.|..++|-.+   ++.+|++++ .|..|++-|..+|+....+
T Consensus       100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~  179 (350)
T KOG0641|consen  100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL  179 (350)
T ss_pred             ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence            999999999 58888876654332     2356679999999999642   467888765 4678999999999999999


Q ss_pred             ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCc----ccCCCCceEEEEccCCCEEEEE-eCC
Q 001352          884 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV----MTLAPSETHIQFHKDQTRFLLV-HET  958 (1093)
Q Consensus       884 ~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~dg~~l~~~-~d~  958 (1093)
                      .||.+.|.++ ++-+|-++++|+.|.+|++||+.-..     ++......    -..+..|.+++..|.|++|+++ .|.
T Consensus       180 sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~-----~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds  253 (350)
T KOG0641|consen  180 SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS-----CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS  253 (350)
T ss_pred             cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccc-----eeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence            9999999886 34468899999999999999998644     22222211    1112469999999999999996 778


Q ss_pred             eEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEE
Q 001352          959 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1038 (1093)
Q Consensus       959 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1038 (1093)
                      ...+||+..+..+..+. +|+..|.++.|||...||+|++.|..|++=|+... +...+.... ...  |-  -..+.+.
T Consensus       254 sc~lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~v-v~e--hk--dk~i~~r  326 (350)
T KOG0641|consen  254 SCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIMV-VAE--HK--DKAIQCR  326 (350)
T ss_pred             ceEEEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceEE-EEe--cc--CceEEEE
Confidence            89999999999998844 69999999999999999999999999999999754 322222111 111  11  2345688


Q ss_pred             eCCCCCCEEEEEeCCCcEEEEecC
Q 001352         1039 AHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus      1039 ~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
                      |+|+| --|++.+.|.++.+|-++
T Consensus       327 wh~~d-~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  327 WHPQD-FSFISSSADKTATLWALN  349 (350)
T ss_pred             ecCcc-ceeeeccCcceEEEeccC
Confidence            99974 668899999999999764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.2e-25  Score=216.18  Aligned_cols=298  Identities=14%  Similarity=0.180  Sum_probs=243.8

Q ss_pred             HHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352          325 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  404 (1093)
Q Consensus       325 ~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  404 (1093)
                      ..+++.|.||++.||.++...... ++.+++.|.+.+||.+++|.++..                   +.||.+.|++++
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik  197 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK  197 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence            456788999999999999988776 799999999999999999999986                   889999999999


Q ss_pred             ECCCCCEEEEEEcCCEEEEEEc------cC--------CC----------------------cc-cceEEeccccccEEE
Q 001352          405 WSPDGSLLGVAYSKHIVQLYAY------HG--------GS----------------------DA-RQQLEIDAHVGNVND  447 (1093)
Q Consensus       405 ~s~dg~~las~~~d~~i~iwd~------~~--------~~----------------------~~-~~~~~~~~h~~~v~~  447 (1093)
                      |++.+.++++++.|++.+||..      ..        ++                      .+ .++..+.+|.+.|.+
T Consensus       198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a  277 (481)
T KOG0300|consen  198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA  277 (481)
T ss_pred             eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence            9999999999999999999972      11        00                      01 124467899999999


Q ss_pred             EEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEe
Q 001352          448 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDY  526 (1093)
Q Consensus       448 ~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~  526 (1093)
                      ..|...|+  -+++++.|.+..+||+++|+.+..+.||....+.++-+|.  .+++++.+.|.+.++||++..- .+..+
T Consensus       278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VF  353 (481)
T KOG0300|consen  278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVF  353 (481)
T ss_pred             hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeee
Confidence            99999999  6999999999999999999999999999999999888664  4789999999999999998543 34578


Q ss_pred             cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 001352          527 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI  605 (1093)
Q Consensus       527 ~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~i  605 (1093)
                      .+|...|+++.|..|.+ +++++.    +..|.+||+++.. ++.++...    .+++.++.+..+..|+.--.+..|++
T Consensus       354 QGHtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtd----S~~NRvavs~g~~iIAiPhDNRqvRl  424 (481)
T KOG0300|consen  354 QGHTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTD----SPANRVAVSKGHPIIAIPHDNRQVRL  424 (481)
T ss_pred             cccccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecC----CccceeEeecCCceEEeccCCceEEE
Confidence            99999999999987765 556654    7789999998764 45555542    58889999987778888888999999


Q ss_pred             EECCCCceEEEE--ecCCCCCCCceEEEecCC--CEEEEEECCCeEEEEEcCCC
Q 001352          606 WDMNKVQLLTTI--DAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPES  655 (1093)
Q Consensus       606 wd~~~~~~~~~~--~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      ||++..++....  ...++..-|.|++|..+.  .-|++++.|..+.-|.+...
T Consensus       425 fDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  425 FDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             EecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            999765543222  122333458889998643  35788889999999988754

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4.4e-25  Score=224.23  Aligned_cols=250  Identities=21%  Similarity=0.280  Sum_probs=214.0

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceE--------------Ee-ccccccEEEEEeeCCCCcE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--------------EI-DAHVGNVNDLAFSAPCKQI  457 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~--------------~~-~~h~~~v~~~~~s~d~~~l  457 (1093)
                      +..|.-+|.+++++||+++..+++.+++|.=|++.+|+..+.+.              .- ++|...|.+++.|+||+  
T Consensus       138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk--  215 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK--  215 (479)
T ss_pred             eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence            55799999999999999999999999999999999887431110              11 27888999999999999  


Q ss_pred             EEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001352          458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  537 (1093)
Q Consensus       458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  537 (1093)
                      +|++|+.|..|.||+..+.+.++.+.+|.+.|.+++|....  .-+++++.|+.|++|+++....+.++.+|...|..+.
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID  293 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence            89999999999999999999999999999999999996544  4799999999999999999988889999999999999


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001352          538 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  617 (1093)
Q Consensus       538 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  617 (1093)
                      ...-++.+-+++.    |.++++|++. -+....+.++.   +.+-|++|-.+ ..+++|+.+|.|.+|++.+.+++.+.
T Consensus       294 aL~reR~vtVGgr----DrT~rlwKi~-eesqlifrg~~---~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  294 ALSRERCVTVGGR----DRTVRLWKIP-EESQLIFRGGE---GSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             hhcccceEEeccc----cceeEEEecc-ccceeeeeCCC---CCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence            8888888877766    7789999994 34445666666   78999999754 68999999999999999999988766


Q ss_pred             ecCCC----------CCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352          618 DAGGG----------LPENPRICFNKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       618 ~~~~~----------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      ....+          ...|++++..|...++++|+.+|.|++|.+.++
T Consensus       365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            53221          126788999999999999999999999998866

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.2e-24  Score=210.16  Aligned_cols=241  Identities=19%  Similarity=0.278  Sum_probs=204.6

Q ss_pred             CCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCC--EEEEEeCCCeEEEEEcCC
Q 001352          800 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARS  876 (1093)
Q Consensus       800 ~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~i~iwd~~~  876 (1093)
                      ..|...++++|+  ++.++|+|+ |.+|+|||+.+.+.+..+..|.+.|+++.|.+ ...  .|.+|+.||.|.+|+...
T Consensus        40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~  116 (362)
T KOG0294|consen   40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS  116 (362)
T ss_pred             cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence            359999999998  789999998 79999999999999999999999999999998 554  899999999999999999


Q ss_pred             cceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEe
Q 001352          877 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH  956 (1093)
Q Consensus       877 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~  956 (1093)
                      .+++..+++|.+.|+.++.+|.|++.++.+.|+.++.||+-.|+......+..         ..+.+.|+|.|.+++++.
T Consensus       117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~  187 (362)
T KOG0294|consen  117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSG  187 (362)
T ss_pred             eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEe
Confidence            99999999999999999999999999999999999999999876433222221         234599999999999999


Q ss_pred             CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeE
Q 001352          957 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1036 (1093)
Q Consensus       957 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1036 (1093)
                      .+.|-+|.+.+-.....+..  ..++.++.|. ++..|++|+.|+.|.+||.+.+...+.+.        .|..+|..+.
T Consensus       188 ~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~i~  256 (362)
T KOG0294|consen  188 RNKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL--------AHENRVKDIA  256 (362)
T ss_pred             ccEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee--------cchhheeeeE
Confidence            99999999988776665432  3567777775 56788999999999999999988887776        4566787765


Q ss_pred             EEeCCCCCCEEEEEeCCCcEEEEecCCC
Q 001352         1037 IAAHPLKPTQFAVGLTNGEVYVIEPNEP 1064 (1093)
Q Consensus      1037 ~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1064 (1093)
                      .--.| ++.+|++++.||.|++||+.-.
T Consensus       257 ~~~~~-~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  257 SYTNP-EHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEecC-CceEEEEeccCceEEEEEcccc
Confidence            54555 5789999999999999999543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=4.6e-25  Score=247.44  Aligned_cols=279  Identities=17%  Similarity=0.241  Sum_probs=241.3

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  475 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  475 (1093)
                      |...+.+..|.  +.++++++.+++|++||..++..+..  .+.||.+.|++++|..-+.  ++++|+.|.+++|||..+
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST  280 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence            66778888888  67899999999999999999875552  3889999999999987455  799999999999999999


Q ss_pred             CceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001352          476 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  555 (1093)
Q Consensus       476 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~  555 (1093)
                      |++.+.+.+|...|.++..    ....+++|+.|.+|++|++.++.....+.+|..+|.++..+  +.++++++.    +
T Consensus       281 g~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d  350 (537)
T KOG0274|consen  281 GECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D  350 (537)
T ss_pred             CcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence            9999999999999999976    33578889999999999999999999999999999999987  888999887    6


Q ss_pred             eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEecCCCCCCCceEEEecC
Q 001352          556 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKN  634 (1093)
Q Consensus       556 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~  634 (1093)
                      +.|.+||+.++++++.+.+|.   ..|.++.+.+. +.+++|+.|++|++||+.+. +++.++..+...  +..+  ...
T Consensus       351 ~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~l--~~~  422 (537)
T KOG0274|consen  351 GTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSSL--LLR  422 (537)
T ss_pred             ceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--cccc--ccc
Confidence            689999999999999999988   99999988766 89999999999999999999 899888877543  4333  345


Q ss_pred             CCEEEEEECCCeEEEEEcCCCceeeeccc-ccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccccee
Q 001352          635 GTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  713 (1093)
Q Consensus       635 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  713 (1093)
                      +++|++++.|++|++||..++..++.+.+ +...+..++..                        ...+++++.++++++
T Consensus       423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~------------------------~~~il~s~~~~~~~l  478 (537)
T KOG0274|consen  423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG------------------------KEEILCSSDDGSVKL  478 (537)
T ss_pred             cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC------------------------cceEEEEecCCeeEE
Confidence            78999999999999999999999999988 45666554442                        356788999999999


Q ss_pred             cceeeccCc
Q 001352          714 EKPLFARPS  722 (1093)
Q Consensus       714 w~~~~~~~~  722 (1093)
                      ||+......
T Consensus       479 ~dl~~~~~~  487 (537)
T KOG0274|consen  479 WDLRSGTLI  487 (537)
T ss_pred             EecccCchh
Confidence            998755443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.4e-25  Score=236.75  Aligned_cols=242  Identities=21%  Similarity=0.255  Sum_probs=207.6

Q ss_pred             EEEEC-CCCCEEEEEEcCCEEEEEEccCCCcc---cceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-
Q 001352          402 RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-  476 (1093)
Q Consensus       402 ~v~~s-~dg~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-  476 (1093)
                      ++..+ |.++||.+|+.||.|++|++......   .....+..|.+.|++++...+++  .|++++.|-+|++|+...+ 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence            34444 46778999999999999998754331   12346788999999999999998  7999999999999999888 


Q ss_pred             -ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc--eE--------Eec-CCCCceEEEEEccCCCE
Q 001352          477 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTRMAYSANGRR  544 (1093)
Q Consensus       477 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~--------~~~-~~~~~v~~~~~s~d~~~  544 (1093)
                       -++.++..|...|.++++. ..+...+++|+-|+.|.+||++++..  ..        .+. ++...|.+++.++.|..
T Consensus       107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~  185 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI  185 (735)
T ss_pred             chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence             6788899999999999984 34557999999999999999997633  11        122 56678999999999988


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCC
Q 001352          545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  624 (1093)
Q Consensus       545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  624 (1093)
                      +++|+.    ++.+++||.++++.+..++||.   ..|..+..++||.+++++|.||+|++||+...+++.++..|..  
T Consensus       186 ivsGgt----ek~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--  256 (735)
T KOG0308|consen  186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--  256 (735)
T ss_pred             EEecCc----ccceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--
Confidence            888876    5559999999999999999999   9999999999999999999999999999999999999887754  


Q ss_pred             CCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352          625 ENPRICFNKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       625 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      .|.++..+|+-.++++|+.||.|..=|+.+.
T Consensus       257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            4899999999999999999999999888764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=1.7e-24  Score=217.71  Aligned_cols=281  Identities=17%  Similarity=0.238  Sum_probs=242.0

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352          398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  477 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  477 (1093)
                      -.|.++...|....+++|+.|.++.++|..+++.+.   .++||...|+++.|+|+..  .+++++.|..|+||......
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s  294 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS  294 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence            468888888888899999999999999999987665   7889999999999999998  79999999999999998888


Q ss_pred             eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CCceEEEEEccCCCEEEEEecCCCCc
Q 001352          478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGE  555 (1093)
Q Consensus       478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~~~~~~  555 (1093)
                      .......|..+|+.+..++  .|.||++++.||+..+.|++++.........  .-.+++.+|+|||..+.++..    +
T Consensus       295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d  368 (506)
T KOG0289|consen  295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D  368 (506)
T ss_pred             Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence            8888889999999999866  5579999999999999999999887766553  346899999999999999876    7


Q ss_pred             eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCC
Q 001352          556 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  635 (1093)
Q Consensus       556 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  635 (1093)
                      +.|.+||+.++..+..|.+|.   ++|..+.|+.+|-+++++.+|+.|++||++.-+...++...... ++.++.|.+.|
T Consensus       369 ~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SG  444 (506)
T KOG0289|consen  369 GVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSG  444 (506)
T ss_pred             ceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCC
Confidence            789999999999999999988   99999999999999999999999999999999988888877654 68999999999


Q ss_pred             CEEEEEECCCeEEEEEcCCC--ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccccee
Q 001352          636 TLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  713 (1093)
Q Consensus       636 ~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  713 (1093)
                      .+|+.++.+=.|++++-.+.  ..+..+..|.+..+++.|.                      ...+++++++.|..+++
T Consensus       445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg----------------------~~aq~l~s~smd~~l~~  502 (506)
T KOG0289|consen  445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG----------------------EHAQYLASTSMDAILRL  502 (506)
T ss_pred             CeEEeecceeEEEEEecccccceeeehhhhcccccceeeec----------------------ccceEEeeccchhheEE
Confidence            99999988766776664443  4555566666666666665                      55677888888887776


Q ss_pred             cc
Q 001352          714 EK  715 (1093)
Q Consensus       714 w~  715 (1093)
                      +.
T Consensus       503 ~a  504 (506)
T KOG0289|consen  503 YA  504 (506)
T ss_pred             ee
Confidence            54

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=5.3e-24  Score=214.27  Aligned_cols=284  Identities=16%  Similarity=0.184  Sum_probs=243.8

Q ss_pred             CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352          336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  415 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~  415 (1093)
                      ..+.++...|... .+.+|+.|..+.++|..+++.+..                   +.||.-.|+.+.|+|+...++++
T Consensus       220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a  279 (506)
T KOG0289|consen  220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA  279 (506)
T ss_pred             CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence            4788888888744 589999999999999999988865                   88999999999999999999999


Q ss_pred             EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec--CCCCeEEee
Q 001352          416 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--HGAPVYSLC  493 (1093)
Q Consensus       416 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~--h~~~v~~~~  493 (1093)
                      +.|..|+||.........   ....|..+|+.+...|.|.  ||++++.|++..+.|+++|..+.....  ..-.+++.+
T Consensus       280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~  354 (506)
T KOG0289|consen  280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA  354 (506)
T ss_pred             CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence            999999999998765433   5678999999999999999  899999999999999999999877653  234478888


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeee
Q 001352          494 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  573 (1093)
Q Consensus       494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~  573 (1093)
                      |+|  ||.++.+|..||.|++||+.+......+.+|.++|..++|+.+|-+|+++..    ++.|.+||++.-+..+++.
T Consensus       355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence            865  7789999999999999999999999999999999999999999999999986    5569999999888888887


Q ss_pred             cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352          574 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  652 (1093)
Q Consensus       574 ~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  652 (1093)
                      ...  ...+.++.|.+.|.++++++.|=.|++++-.+.........+.+.+..+.+.|....+++++++.|..++++.+
T Consensus       429 l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  429 LDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            766  45799999999999999998887777777555444333333333345789999999999999999999888754

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.93  E-value=2.5e-23  Score=218.10  Aligned_cols=216  Identities=16%  Similarity=0.181  Sum_probs=161.9

Q ss_pred             eecCCCCCeEEEEECC-CCCEEEEEEcCCEEEEEEccCCCccc---ceEEeccccccEEEEEeeCCCCcEEEEEEcCCCc
Q 001352          392 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT  467 (1093)
Q Consensus       392 ~~~~h~~~V~~v~~s~-dg~~las~~~d~~i~iwd~~~~~~~~---~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~  467 (1093)
                      ++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|-...   ....+.+..-.|-++.|+|.... +++ .+..|+
T Consensus        74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~-s~a~g~  151 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILA-SGAHGS  151 (1012)
T ss_pred             eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEE-eccCce
Confidence            4889999999999999 67799999999999999998543211   11223344557899999998875 344 455889


Q ss_pred             EEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCC-ceEEEEEccCCCEE
Q 001352          468 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGL-GCTRMAYSANGRRL  545 (1093)
Q Consensus       468 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~-~v~~~~~s~d~~~l  545 (1093)
                      ++|||+.+++.+..+.+|...|.++.|  +.||.+|+++++|..|+|||.+.... +.....|++ .-..+.|..+-.+|
T Consensus       152 v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl  229 (1012)
T KOG1445|consen  152 VYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL  229 (1012)
T ss_pred             EEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence            999999999999999999999999998  67889999999999999999986543 444555554 33456777776678


Q ss_pred             EEEecCCCCceeEEEEeCCCC-eeeeeeecccccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCce
Q 001352          546 FSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL  613 (1093)
Q Consensus       546 ~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~~~~~  613 (1093)
                      ++.+.+......|++||.+.. ..++++.-..  ...+.--.|.||.+.++. |-.+.++..+.+...+.
T Consensus       230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qP  297 (1012)
T KOG1445|consen  230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQP  297 (1012)
T ss_pred             hhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEEEEEecCCCc
Confidence            777766555677999998753 3444444332  234555678899887765 44678888888776543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.4e-24  Score=207.29  Aligned_cols=341  Identities=15%  Similarity=0.250  Sum_probs=241.7

Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  490 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~  490 (1093)
                      .+++...+++++.         +....+.||.+.|+.++......  ++.+++.|.+.+||.+++|+|+.++.||.+.|+
T Consensus       126 rivssFk~~t~~~---------~lvre~~GHkDGiW~Vaa~~tqp--i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVN  194 (481)
T KOG0300|consen  126 RIVSSFKDGTVKF---------RLVRELEGHKDGIWHVAADSTQP--ICGTASADHTARIWSLESGACLATYTGHTGSVN  194 (481)
T ss_pred             hheeeecCCceeE---------eehhhhcccccceeeehhhcCCc--ceeecccccceeEEeeccccceeeeccccccee
Confidence            4556666666432         12225789999999999877665  899999999999999999999999999999999


Q ss_pred             EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352          491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  567 (1093)
Q Consensus       491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~  567 (1093)
                      ++.|+++  +.++++++.|++-+||...-.-....-   ..+.+. ..+..+........++...+ ...|       ..
T Consensus       195 sikfh~s--~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE-eE~e~sDe~~~d~d~~~~sD-~~ti-------Rv  263 (481)
T KOG0300|consen  195 SIKFHNS--GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE-EEEEHSDEHNRDTDSSEKSD-GHTI-------RV  263 (481)
T ss_pred             eEEeccc--cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch-hhhhcccccccccccccccC-Ccee-------ee
Confidence            9999764  469999999999999963211000000   000000 00001100001111110000 1112       23


Q ss_pred             eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeE
Q 001352          568 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI  647 (1093)
Q Consensus       568 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i  647 (1093)
                      ++..+.+|.   ..|.++.|-..|+++++++.|.+..+||+++|+.+..+.+|.+  ..+.++-+|..+++++.+.|.++
T Consensus       264 Pl~~ltgH~---~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~--ELtHcstHptQrLVvTsSrDtTF  338 (481)
T KOG0300|consen  264 PLMRLTGHR---AVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS--ELTHCSTHPTQRLVVTSSRDTTF  338 (481)
T ss_pred             eeeeeeccc---cceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcch--hccccccCCcceEEEEeccCcee
Confidence            456778877   8999999999999999999999999999999999999987754  57888899999999999999999


Q ss_pred             EEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcccccc
Q 001352          648 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL  727 (1093)
Q Consensus       648 ~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~  727 (1093)
                      ++||....                                                                        
T Consensus       339 RLWDFRea------------------------------------------------------------------------  346 (481)
T KOG0300|consen  339 RLWDFREA------------------------------------------------------------------------  346 (481)
T ss_pred             Eeccchhh------------------------------------------------------------------------
Confidence            99987632                                                                        


Q ss_pred             ccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCee
Q 001352          728 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  807 (1093)
Q Consensus       728 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  807 (1093)
                                |.+++.                                                     +  .+|...|+
T Consensus       347 ----------I~sV~V-----------------------------------------------------F--QGHtdtVT  361 (481)
T KOG0300|consen  347 ----------IQSVAV-----------------------------------------------------F--QGHTDTVT  361 (481)
T ss_pred             ----------cceeee-----------------------------------------------------e--ccccccee
Confidence                      111100                                                     0  03666667


Q ss_pred             EEEEccCCCEEEEEeCCeEEEEEccCce-eEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec---
Q 001352          808 CFALSKNDAYLFSASGGVISLYIVMTFK-TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL---  883 (1093)
Q Consensus       808 ~l~~s~dg~~la~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l---  883 (1093)
                      ++.|..|.+.+....|.+|++||+.+-+ .+.++. ...++..++.+. ++.++|.--.+..|++||+...+ +.++   
T Consensus       362 S~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~R-laRlPrt  438 (481)
T KOG0300|consen  362 SVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNR-LARLPRT  438 (481)
T ss_pred             EEEEecCCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEecCCCc-cccCCcc
Confidence            7777666554333335778888876543 344444 456788999998 88899999989999999998543 3333   


Q ss_pred             --ccccCCeEEEEEeCCC--CEEEEEeCCCcEEEEeCCC
Q 001352          884 --EGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       884 --~~h~~~V~~l~~s~dg--~~l~s~s~dg~i~iwd~~~  918 (1093)
                        ++|..-|+|++|+.+.  .-|+++|.|+.+.-|++..
T Consensus       439 sRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  439 SRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             cccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence              4799999999998654  4588999999999999876

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8.2e-25  Score=204.79  Aligned_cols=244  Identities=15%  Similarity=0.267  Sum_probs=202.5

Q ss_pred             CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-CCCEEE
Q 001352          335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLG  413 (1093)
Q Consensus       335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-dg~~la  413 (1093)
                      .+.+..++||+.....+++++.||+++|||+.....    ++              ..++.|...|.++.|++ +++.++
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~----Pi--------------~~~kEH~~EV~Svdwn~~~r~~~l  121 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK----PI--------------HKFKEHKREVYSVDWNTVRRRIFL  121 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCc----ch--------------hHHHhhhhheEEeccccccceeEE
Confidence            568999999998877899999999999999532211    11              12778999999999999 566778


Q ss_pred             EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEee
Q 001352          414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC  493 (1093)
Q Consensus       414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  493 (1093)
                      ++|-|++|++|+...+..++   ++.||...|...+|+|.... ++++++.|+++++||++.......+..|...+.++.
T Consensus       122 tsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cd  197 (311)
T KOG0277|consen  122 TSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCD  197 (311)
T ss_pred             eeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEeccceeEeec
Confidence            88999999999999887666   78999999999999998766 799999999999999987655555999999999999


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCceEEEEEccCCC-EEEEEecCCCCceeEEEEeCCCC-eeee
Q 001352          494 PHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESEG-AIKR  570 (1093)
Q Consensus       494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~~-~~~~  570 (1093)
                      |+.. +...+++|+.|+.|+.||+++.+ .+.++.+|+-.|+.+.|||... .|++++.    |-++++||...+ ..+.
T Consensus       198 w~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~riw~~~~~ds~~e  272 (311)
T KOG0277|consen  198 WSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRIWDPERQDSAIE  272 (311)
T ss_pred             cccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEecccccchhhhh
Confidence            9855 45799999999999999999865 4557888999999999999754 5667765    778999999854 4555


Q ss_pred             eeecccccCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 001352          571 TYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDM  608 (1093)
Q Consensus       571 ~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~dg~i~iwd~  608 (1093)
                      ++..|.   .-+..+.|++- +.++++++-|+.++||+.
T Consensus       273 ~~~~Ht---EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  273 TVDHHT---EFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhccc---eEEeccccccccCceeeecccccceeeecc
Confidence            666555   77888888875 568888999999999984

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=2.9e-25  Score=218.19  Aligned_cols=284  Identities=14%  Similarity=0.224  Sum_probs=233.7

Q ss_pred             EeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEE
Q 001352          437 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL  516 (1093)
Q Consensus       437 ~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd  516 (1093)
                      .+.||.+.|.|++=+|..-. .++||+.||.|+|||+.+..++.+++.|.+.|..+++..    ..+++++.|.+|+.|.
T Consensus        61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence            46789999999999998622 699999999999999999999999999999999999854    5799999999999998


Q ss_pred             cCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEE-
Q 001352          517 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-  595 (1093)
Q Consensus       517 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-  595 (1093)
                      ++.. ...++. ....+..+.-+..+..+++||.      .|.|||.....++..+.-..   ..|.++.|+|....++ 
T Consensus       136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa  204 (433)
T KOG0268|consen  136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA  204 (433)
T ss_pred             ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence            7763 333332 2334556666667778888864      39999999888888887655   7899999999876555 


Q ss_pred             EEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC-ceeeecccccccceeeeec
Q 001352          596 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN  674 (1093)
Q Consensus       596 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~  674 (1093)
                      +++.|+.|.+||++.+.++..+...-   ..+.++|+|++-.++++..|..++.+|+... .++....+|...+..+.|+
T Consensus       205 s~~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs  281 (433)
T KOG0268|consen  205 SCASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS  281 (433)
T ss_pred             eeccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence            46699999999999999988876543   3578999999889999999999999999865 6677888888888877776


Q ss_pred             CCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEee
Q 001352          675 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA  754 (1093)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~  754 (1093)
                                            |.|+-+++|+.|.+|++|....+.........     ....|.++.||-|.+++++|+
T Consensus       282 ----------------------ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~V~~Vk~S~Dskyi~SGS  334 (433)
T KOG0268|consen  282 ----------------------PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQHVFCVKYSMDSKYIISGS  334 (433)
T ss_pred             ----------------------CCcchhccccccceEEEeecCCCcchhhhhHh-----hhheeeEEEEeccccEEEecC
Confidence                                  77888999999999999998755444333222     345799999999999999999


Q ss_pred             ccceeEEeeecC
Q 001352          755 SNGVHLMWRWPR  766 (1093)
Q Consensus       755 ~dg~v~vw~~~~  766 (1093)
                      .|+.|++|.-..
T Consensus       335 dd~nvRlWka~A  346 (433)
T KOG0268|consen  335 DDGNVRLWKAKA  346 (433)
T ss_pred             CCcceeeeecch
Confidence            999999998653

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.3e-23  Score=203.11  Aligned_cols=270  Identities=20%  Similarity=0.278  Sum_probs=214.9

Q ss_pred             CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEE
Q 001352          335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  414 (1093)
Q Consensus       335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las  414 (1093)
                      .+.|+.+.|+|.+.. |++++.||++++||+........                    -.|+.++.+++|.+ ...+++
T Consensus        13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~   70 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT   70 (323)
T ss_pred             hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence            458999999999986 55557999999999988755432                    23899999999997 567889


Q ss_pred             EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeee
Q 001352          415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  494 (1093)
Q Consensus       415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~  494 (1093)
                      |+.||.|+.+|++++...    .+..|..+|.|+.+++-..  .+++||.|++|++||.........+. ....|.++..
T Consensus        71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v  143 (323)
T KOG1036|consen   71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV  143 (323)
T ss_pred             eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence            999999999999998644    4668999999999998776  79999999999999988766665554 3347888865


Q ss_pred             cccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC----ee
Q 001352          495 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG----AI  568 (1093)
Q Consensus       495 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~----~~  568 (1093)
                          .+..|+.|+.|..|.+||+++..........  .-.++++++-|++.-.++++.    +|.|.+=.++..    ..
T Consensus       144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk  215 (323)
T KOG1036|consen  144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK  215 (323)
T ss_pred             ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence                4568999999999999999987766533222  236899999998887777776    444554443333    33


Q ss_pred             eeeeeccccc------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEE
Q 001352          569 KRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  642 (1093)
Q Consensus       569 ~~~~~~~~~~------~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  642 (1093)
                      ...|+.|...      ..+|++++|+|-.+.+++|+.||.|.+||+.+.+.+..+...  ...|.+++|+.+|..||+++
T Consensus       216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEe
Confidence            4456665522      246899999999999999999999999999999988888654  23589999999999999987


Q ss_pred             C
Q 001352          643 N  643 (1093)
Q Consensus       643 ~  643 (1093)
                      .
T Consensus       294 s  294 (323)
T KOG1036|consen  294 S  294 (323)
T ss_pred             c
Confidence            6

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.3e-24  Score=230.10  Aligned_cols=274  Identities=20%  Similarity=0.249  Sum_probs=236.9

Q ss_pred             EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352          402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  481 (1093)
Q Consensus       402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  481 (1093)
                      -+.|| ....||+|... .|++|+..+++... +  ...+...|+++.|+++|.  +|+.|..+|.|.|||..+.+.+..
T Consensus       182 lldWs-s~n~laValg~-~vylW~~~s~~v~~-l--~~~~~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~~~k~~~~  254 (484)
T KOG0305|consen  182 LLDWS-SANVLAVALGQ-SVYLWSASSGSVTE-L--CSFGEELVTSVKWSPDGS--HLAVGTSDGTVQIWDVKEQKKTRT  254 (484)
T ss_pred             Hhhcc-cCCeEEEEecc-eEEEEecCCCceEE-e--EecCCCceEEEEECCCCC--EEEEeecCCeEEEEehhhcccccc
Confidence            46788 45577777544 59999999987333 2  223488999999999999  899999999999999999999999


Q ss_pred             eec-CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352          482 FEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  559 (1093)
Q Consensus       482 ~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~  559 (1093)
                      +.+ |...|-+++|.    +..+.+|+.||.|..+|++....... +.+|...|-.+.|++|++++++++.    |+.+.
T Consensus       255 ~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn----DN~~~  326 (484)
T KOG0305|consen  255 LRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN----DNVVF  326 (484)
T ss_pred             ccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC----ccceE
Confidence            998 99999999994    46899999999999999998877665 7889999999999999999999987    77799


Q ss_pred             EEeCCCCeeeeeeecccccCCCeEEEEEcCCC-CEEEE--EeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC
Q 001352          560 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT  636 (1093)
Q Consensus       560 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  636 (1093)
                      |||.....++..+..|.   ..|.+++|+|-. ..|++  |+.|+.|++||..+++.+..+...   ..|.++.|++..+
T Consensus       327 Iwd~~~~~p~~~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~k  400 (484)
T KOG0305|consen  327 IWDGLSPEPKFTFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG---SQVCSLIWSKKYK  400 (484)
T ss_pred             eccCCCccccEEEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC---CceeeEEEcCCCC
Confidence            99998889999999988   999999999974 45666  458999999999999999888755   3489999999887


Q ss_pred             EEEEE--ECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceec
Q 001352          637 LLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVE  714 (1093)
Q Consensus       637 ~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w  714 (1093)
                      -|+++  ..++.|.||+..+...+..+.+|...|..++++                      |||..+++++.|.++++|
T Consensus       401 Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~S----------------------Pdg~~i~t~a~DETlrfw  458 (484)
T KOG0305|consen  401 ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALS----------------------PDGETIVTGAADETLRFW  458 (484)
T ss_pred             EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEEC----------------------CCCCEEEEecccCcEEec
Confidence            66664  457899999999999999999999999988886                      789999999999999999


Q ss_pred             ceee
Q 001352          715 KPLF  718 (1093)
Q Consensus       715 ~~~~  718 (1093)
                      ++-.
T Consensus       459 ~~f~  462 (484)
T KOG0305|consen  459 NLFD  462 (484)
T ss_pred             cccC
Confidence            9653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=9.4e-21  Score=208.97  Aligned_cols=278  Identities=17%  Similarity=0.220  Sum_probs=225.9

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCc-eeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCE
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  411 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~  411 (1093)
                      .|+..-+.++|.|+|. +|.+++.||.|++|+..+-. ....                   +.-++..|.+++..  +.+
T Consensus        11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~~--s~~   68 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIACY--SNH   68 (933)
T ss_pred             hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEeec--ccc
Confidence            5888999999999999 68999999999999987652 1111                   22267778777764  559


Q ss_pred             EEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEE
Q 001352          412 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS  491 (1093)
Q Consensus       412 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~  491 (1093)
                      |++|+.+++|.+|...+++.-.   .+...+-++++++|+.+|+  +++.||.|-.|++-++.++.....+++|.++|.+
T Consensus        69 f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~  143 (933)
T KOG1274|consen   69 FLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ  143 (933)
T ss_pred             eEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceee
Confidence            9999999999999999886443   3445677899999999999  8999999999999999999999999999999999


Q ss_pred             eeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001352          492 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  563 (1093)
Q Consensus       492 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--------~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~  563 (1093)
                      +.++|  ++.+||+.+-||.|++|+++++.....+..-        ...+..++|+|+|..+++...    ++.|.+|+.
T Consensus       144 l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r  217 (933)
T KOG1274|consen  144 LSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSR  217 (933)
T ss_pred             eeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEcc
Confidence            99965  5679999999999999999988766654332        235678999999776666655    677999999


Q ss_pred             CCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC
Q 001352          564 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  643 (1093)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  643 (1093)
                      .++.....+.....+ ..+..+.|+|+|.||++++.+|.|.|||.++...      |.....|.+++|.|+.+.+-....
T Consensus       218 ~~we~~f~Lr~~~~s-s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~  290 (933)
T KOG1274|consen  218 KGWELQFKLRDKLSS-SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITA  290 (933)
T ss_pred             CCceeheeecccccc-cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEee
Confidence            999998888765522 3489999999999999999999999999998222      333456899999999887766666


Q ss_pred             CCeEEEE
Q 001352          644 ENRIKIL  650 (1093)
Q Consensus       644 dg~i~iw  650 (1093)
                      .|...+|
T Consensus       291 ~g~~~~~  297 (933)
T KOG1274|consen  291 LGTLGVS  297 (933)
T ss_pred             ccccccC
Confidence            5555554

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.3e-23  Score=202.77  Aligned_cols=298  Identities=13%  Similarity=0.172  Sum_probs=218.5

Q ss_pred             HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      .+.+|.||.++|++++||.||++ ||+++.|++|+||++..-.....+.++               ..-.-+..+.++|+
T Consensus        78 ~~~~LKgH~~~vt~~~FsSdGK~-lat~~~Dr~Ir~w~~~DF~~~eHr~~R---------------~nve~dhpT~V~Fa  141 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSDGKK-LATISGDRSIRLWDVRDFENKEHRCIR---------------QNVEYDHPTRVVFA  141 (420)
T ss_pred             hhhhhhccCCceeeeEEcCCCce-eEEEeCCceEEEEecchhhhhhhhHhh---------------ccccCCCceEEEEC
Confidence            45689999999999999999997 899999999999999874433211111               11122357889999


Q ss_pred             CCCCEEEEEE-cCCEEEEEEccCCCc---ccceE------EeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC
Q 001352          407 PDGSLLGVAY-SKHIVQLYAYHGGSD---ARQQL------EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  476 (1093)
Q Consensus       407 ~dg~~las~~-~d~~i~iwd~~~~~~---~~~~~------~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  476 (1093)
                      ||-+-+++.. ...++++|.+...+.   .....      --+.|.-.|..+-....++  ++++++.|..|.+|++. |
T Consensus       142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k--~imsas~dt~i~lw~lk-G  218 (420)
T KOG2096|consen  142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK--YIMSASLDTKICLWDLK-G  218 (420)
T ss_pred             CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce--EEEEecCCCcEEEEecC-C
Confidence            9987766654 445799998754321   11100      1124666788888887888  89999999999999988 9


Q ss_pred             ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC--------CCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001352          477 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--------SLGARVDYDAPGLGCTRMAYSANGRRLFSC  548 (1093)
Q Consensus       477 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~--------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~  548 (1093)
                      +.+..+......-+..+.  +++|+++++++..-.|++|.+-        .-...+.+.+|...|..++|+++.+++++.
T Consensus       219 q~L~~idtnq~~n~~aav--SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv  296 (420)
T KOG2096|consen  219 QLLQSIDTNQSSNYDAAV--SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV  296 (420)
T ss_pred             ceeeeeccccccccceee--CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence            999988766655566666  5688999999999999999753        223455788999999999999999999999


Q ss_pred             ecCCCCceeEEEEeCCCC-------eeeeeee--cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 001352          549 GTSKEGESFLVEWNESEG-------AIKRTYQ--GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA  619 (1093)
Q Consensus       549 ~~~~~~~~~i~iwd~~~~-------~~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  619 (1093)
                      +.    |+.+++||..-.       +.+++..  .+. .......+..+|+|+.|+... ...+.++..++|+....+..
T Consensus       297 Sk----DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~a-ag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~  370 (420)
T KOG2096|consen  297 SK----DGKWRIWDTDVRYEAGQDPKILKEGSAPLHA-AGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELED  370 (420)
T ss_pred             ec----CCcEEEeeccceEecCCCchHhhcCCcchhh-cCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHH
Confidence            87    677999997521       2222221  111 123445899999998766643 45799999999887766653


Q ss_pred             CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352          620 GGGLPENPRICFNKNGTLLAVIANENRIKILETP  653 (1093)
Q Consensus       620 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  653 (1093)
                      - +...|.+++|+++|++++++++ ..++++.-.
T Consensus       371 ~-h~~~Is~is~~~~g~~~atcGd-r~vrv~~nt  402 (420)
T KOG2096|consen  371 I-HSTTISSISYSSDGKYIATCGD-RYVRVIRNT  402 (420)
T ss_pred             h-hcCceeeEEecCCCcEEeeecc-eeeeeecCC
Confidence            2 2245899999999999999875 677776633

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.4e-23  Score=202.96  Aligned_cols=272  Identities=16%  Similarity=0.230  Sum_probs=223.3

Q ss_pred             EEEEEcCCEEEEEEccCCC---------cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe
Q 001352          412 LGVAYSKHIVQLYAYHGGS---------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  482 (1093)
Q Consensus       412 las~~~d~~i~iwd~~~~~---------~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~  482 (1093)
                      |++|+....|.-+++.-..         .+.+...+..|.++|++++.+  +.  ++++||.|-+|+|||+.+...+..+
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~l   79 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGIL   79 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcce
Confidence            5566666655555543211         123345677899999999996  45  8999999999999999999999999


Q ss_pred             ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001352          483 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  562 (1093)
Q Consensus       483 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd  562 (1093)
                      -.|.+.|+++.|.+......|++|+.||.|.+|+...-.....+..|.+.|+.++++|.|++.++.+.    |..+++||
T Consensus        80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~----D~~lr~WN  155 (362)
T KOG0294|consen   80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG----DQVLRTWN  155 (362)
T ss_pred             eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC----Cceeeeeh
Confidence            99999999999987665568999999999999999999889999999999999999999999998875    77899999


Q ss_pred             CCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEE
Q 001352          563 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  642 (1093)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  642 (1093)
                      +-+|+.-....-..    ....+.|+|.|.+++.++.++ |-||.+.+......+...   ..+.++.|. ++..|++|.
T Consensus       156 LV~Gr~a~v~~L~~----~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~---~r~l~~~~l-~~~~L~vG~  226 (362)
T KOG0294|consen  156 LVRGRVAFVLNLKN----KATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENP---KRILCATFL-DGSELLVGG  226 (362)
T ss_pred             hhcCccceeeccCC----cceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhcc---ccceeeeec-CCceEEEec
Confidence            99988766555433    345599999999998888765 899999988777666543   224555554 577899999


Q ss_pred             CCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeecc
Q 001352          643 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  720 (1093)
Q Consensus       643 ~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~  720 (1093)
                      +|+.|.+||..+..+...+.+|...|..+.+-.                    .|++.+++++++||.|++||++...
T Consensus       227 d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~--------------------~~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  227 DNEWISLKDTDSDTPLTEFLAHENRVKDIASYT--------------------NPEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             CCceEEEeccCCCccceeeecchhheeeeEEEe--------------------cCCceEEEEeccCceEEEEEccccc
Confidence            999999999999999999999999998887431                    5788999999999999999987553

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.7e-24  Score=201.45  Aligned_cols=252  Identities=20%  Similarity=0.322  Sum_probs=209.1

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeC--CCCcEEEEEEcCCCcEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKV  470 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~v  470 (1093)
                      ...|++-|..+...--|++||+|+.|++|+|+.+..+.....+.++.||.++|+.++|..  -|.  +|++++.||.|.|
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi   84 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII   84 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence            557999999999888899999999999999999998877677779999999999999976  677  8999999999999


Q ss_pred             EECCCCce--eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC---ceEEecCCCCceEEEEEccC---C
Q 001352          471 WDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSAN---G  542 (1093)
Q Consensus       471 wd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~s~d---~  542 (1093)
                      |.-+.|+-  .+....|...|++++|.|..-|-.|++++.||.|.+.+++...   .......|.-.|++++|.|-   |
T Consensus        85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g  164 (299)
T KOG1332|consen   85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG  164 (299)
T ss_pred             EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence            99887753  4566789999999999999999999999999999999988762   23345667888999999986   4


Q ss_pred             -----------CEEEEEecCCCCceeEEEEeCCCCe--eeeeeecccccCCCeEEEEEcCCC----CEEEEEeCCCcEEE
Q 001352          543 -----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIKI  605 (1093)
Q Consensus       543 -----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~----~~l~~~~~dg~i~i  605 (1093)
                                 +.|++++.    |..|.+|+..+++  ..+++.+|.   +.|+.++|.|.-    .+|+++++||++.|
T Consensus       165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~viI  237 (299)
T KOG1332|consen  165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVII  237 (299)
T ss_pred             cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence                       56888876    7779999988763  345577777   999999999974    57899999999999


Q ss_pred             EECCCC--ceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352          606 WDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  654 (1093)
Q Consensus       606 wd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  654 (1093)
                      |.....  ....++. +.....+..+.||..|+.|++++.|+.+.+|.-..
T Consensus       238 wt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  238 WTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             EEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            976632  1122221 12234588999999999999999999999998653

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=5.6e-23  Score=231.33  Aligned_cols=248  Identities=12%  Similarity=0.171  Sum_probs=189.6

Q ss_pred             EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC-CCcEEEEEEcCCCcEEEEECCCCc--------eeEEeecC
Q 001352          415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH  485 (1093)
Q Consensus       415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~--------~~~~~~~h  485 (1093)
                      |+.++.|++|+.....   ....+.+|.+.|.+++|+|+ +.  +|+||+.|++|+|||+.++.        ++..+.+|
T Consensus        50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH  124 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH  124 (568)
T ss_pred             CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence            5567889999987653   33478899999999999997 56  89999999999999998642        34567899


Q ss_pred             CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352          486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  565 (1093)
Q Consensus       486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~  565 (1093)
                      ...|.+++|+|... .++++++.|++|++||+++......+. +...|.+++|+|+|.+|++++.    ++.|++||+++
T Consensus       125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs  198 (568)
T PTZ00420        125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK  198 (568)
T ss_pred             CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence            99999999987532 356799999999999999888766665 4568999999999999998875    66799999999


Q ss_pred             CeeeeeeecccccCCCe-----EEEEEcCCCCEEEEEeCCC----cEEEEECCC-CceEEEEecCCCCCCCceEEEecCC
Q 001352          566 GAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNG  635 (1093)
Q Consensus       566 ~~~~~~~~~~~~~~~~v-----~~v~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~  635 (1093)
                      ++.+..+.+|.   +.+     ....|++++.++++++.++    .|+|||+++ ++++..+..+.....+......++|
T Consensus       199 g~~i~tl~gH~---g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg  275 (568)
T PTZ00420        199 QEIASSFHIHD---GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG  275 (568)
T ss_pred             CcEEEEEeccc---CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence            99999998887   432     2334568999999988764    799999985 6667666555443323333334568


Q ss_pred             CEEEEEECCCeEEEEEcCCCceeeecc-cccccceeeeecCC
Q 001352          636 TLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPI  676 (1093)
Q Consensus       636 ~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~  676 (1093)
                      .++++|+.|+.|++|++..+.....-. .+..+..+++|.|.
T Consensus       276 ~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk  317 (568)
T PTZ00420        276 LIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK  317 (568)
T ss_pred             CEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence            899999999999999998663221111 13445566666653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.8e-20  Score=205.25  Aligned_cols=278  Identities=13%  Similarity=0.174  Sum_probs=234.5

Q ss_pred             cCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCC-CcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          394 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       394 ~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      ..|...-+.++|.|+|.+|++++.||.|++|+..+. +...   .+..+...|.+++...  .  .|++|+.+++|.+|.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~s--~--~f~~~s~~~tv~~y~   82 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACYS--N--HFLTGSEQNTVLRYK   82 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeecc--c--ceEEeeccceEEEee
Confidence            368899999999999999999999999999998876 3222   3334777888877654  3  699999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      ...++.-..+...+-+++.+++  +.+|.+++.||.|-.|++-++........+.+|..+|.++.|+|++++||+.+.  
T Consensus        83 fps~~~~~iL~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~--  158 (933)
T KOG1274|consen   83 FPSGEEDTILARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC--  158 (933)
T ss_pred             CCCCCccceeeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence            9998877666677788999998  567789999999999999999999999999999999999999999999999876  


Q ss_pred             CCceeEEEEeCCCCeeeeeeeccccc-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCc
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  627 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  627 (1093)
                        +|.|++||+.++.+..++.+....     ...+..++|+|++..++..+.|+.|.+|+..+......+........+.
T Consensus       159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~  236 (933)
T KOG1274|consen  159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS  236 (933)
T ss_pred             --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence              778999999999988777664321     2346778999999999999999999999999999998887665555588


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCc
Q 001352          628 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS  688 (1093)
Q Consensus       628 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  688 (1093)
                      .+.|+|+|+|||+++.+|.|.|||..+..    .......|.+++|.|....+..-...+.
T Consensus       237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~----~~~~~~~Vc~~aw~p~~n~it~~~~~g~  293 (933)
T KOG1274|consen  237 DLQWSPNGKYIAASTLDGQILVWNVDTHE----RHEFKRAVCCEAWKPNANAITLITALGT  293 (933)
T ss_pred             EEEEcCCCcEEeeeccCCcEEEEecccch----hccccceeEEEecCCCCCeeEEEeeccc
Confidence            99999999999999999999999999721    1555678999999988877665444443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.2e-21  Score=213.91  Aligned_cols=511  Identities=16%  Similarity=0.169  Sum_probs=324.8

Q ss_pred             cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCc-cEEEEEecCCeEEEEEcC
Q 001352          440 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYD  518 (1093)
Q Consensus       440 ~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~vwd~~  518 (1093)
                      |-...-....||+|++.  ++... +..|.||...||.++..+.+|..++.++.+.+.... .++++++.||.|++||..
T Consensus        14 g~n~~~~~avfSnD~k~--l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~   90 (792)
T KOG1963|consen   14 GRNGNKSPAVFSNDAKF--LFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS   90 (792)
T ss_pred             cccceecccccccCCcE--EEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence            33333445679999994  44333 568999999999999999999999999999877664 678899999999999999


Q ss_pred             CCCceEEecCCCCceEEEEEcc---CCCEEEEEecCCCCceeEEEEeCCCCeee-------------eeeecccccCCCe
Q 001352          519 SLGARVDYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIK-------------RTYQGLQLQHNSV  582 (1093)
Q Consensus       519 ~~~~~~~~~~~~~~v~~~~~s~---d~~~l~~~~~~~~~~~~i~iwd~~~~~~~-------------~~~~~~~~~~~~v  582 (1093)
                      .+....++.... ++..+.+.|   +-...+..+.  +....+...........             .....+.    .-
T Consensus        91 ~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~--~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~----~~  163 (792)
T KOG1963|consen   91 DGELLKTFDNNL-PVHALVYKPAQADISANVYVSV--EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ----EP  163 (792)
T ss_pred             CcEEEEEEecCC-ceeEEEechhHhCccceeEeec--ccceeeeecccccccceeeeEeeeccccchhhhhhhc----CC
Confidence            888777665543 222333222   1111121111  00001111111111111             1111111    13


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE--ecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeee
Q 001352          583 SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI--DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA  660 (1093)
Q Consensus       583 ~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~  660 (1093)
                      .++.+++.+++....-. ..+.+|+..++......  ....+.-.+++.++||+++++|++..||.|.+|.--..     
T Consensus       164 ~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-----  237 (792)
T KOG1963|consen  164 KSIVDNNSGEFKGIVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-----  237 (792)
T ss_pred             ccEEEcCCceEEEEEEe-eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-----
Confidence            56778887776666554 45888888775521111  01122334789999999999999999999999975431     


Q ss_pred             cccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEE
Q 001352          661 AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR  740 (1093)
Q Consensus       661 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~  740 (1093)
                       ....                                           -+.++|.               .  |...|.+
T Consensus       238 -~~~~-------------------------------------------~t~t~lH---------------W--H~~~V~~  256 (792)
T KOG1963|consen  238 -SDDS-------------------------------------------ETCTLLH---------------W--HHDEVNS  256 (792)
T ss_pred             -cccc-------------------------------------------ccceEEE---------------e--cccccce
Confidence             0000                                           0111111               0  6678999


Q ss_pred             EEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEE
Q 001352          741 LTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS  820 (1093)
Q Consensus       741 l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~  820 (1093)
                      ++|+++|.+|++|+.+|.+.+|.+..++.                      ..   +|.  -..+|..+.+|||+.+.+.
T Consensus       257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k----------------------qf---LPR--Lgs~I~~i~vS~ds~~~sl  309 (792)
T KOG1963|consen  257 LSFSSDGAYLLSGGREGVLVLWQLETGKK----------------------QF---LPR--LGSPILHIVVSPDSDLYSL  309 (792)
T ss_pred             eEEecCCceEeecccceEEEEEeecCCCc----------------------cc---ccc--cCCeeEEEEEcCCCCeEEE
Confidence            99999999999999999999998765421                      11   111  5778999999999998887


Q ss_pred             Ee-CCeEEEEEccCceeEEEECC---C--------CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecc----
Q 001352          821 AS-GGVISLYIVMTFKTILTIMP---P--------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE----  884 (1093)
Q Consensus       821 ~~-dg~i~iwd~~~~~~~~~~~~---~--------~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~----  884 (1093)
                      .. |+.|.+....+.....++.+   .        .+-.+.++++| ..+.++-.+..|.|.+||+.+.+.+..+.    
T Consensus       310 ~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~  388 (792)
T KOG1963|consen  310 VLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDE  388 (792)
T ss_pred             EecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEee
Confidence            75 89998887765544444332   2        23457788999 67788888899999999998876655442    


Q ss_pred             -------cccCCeEEEEEeCCCCEEEEEeC--------CC--cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEcc
Q 001352          885 -------GHSKRVTGLVFSDALNILVSSGG--------DA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK  947 (1093)
Q Consensus       885 -------~h~~~V~~l~~s~dg~~l~s~s~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  947 (1093)
                             .+.-.+++++.+-.|.+++|.-.        ||  .+++|-...........-.....|..  ..+..+.+++
T Consensus       389 n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~  466 (792)
T KOG1963|consen  389 NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNP  466 (792)
T ss_pred             cccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecC
Confidence                   12345788888889999998632        33  47889877654332222222222222  1233333444


Q ss_pred             CCC-EEEE-EeCCeEEEEEcCCccee---------eeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-CceEE
Q 001352          948 DQT-RFLL-VHETHLAIYEAEELTCL---------KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQC 1015 (1093)
Q Consensus       948 dg~-~l~~-~~d~~i~vwd~~~~~~~---------~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~-~~~~~ 1015 (1093)
                      -.. ..++ +.||.+++|-..+.+.+         ..+-.-|..++++++||.||+.|+ ++.|++|.+||..+ .++.+
T Consensus       467 ~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~  545 (792)
T KOG1963|consen  467 TRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLC  545 (792)
T ss_pred             cccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhc
Confidence            333 5555 68999999988433211         111223688999999999997666 55788999999999 56655


Q ss_pred             EeccccccCCCCCCCccceeEE-EeCCCCCCEEEEEeCCCcEEEEecCCCCCCc
Q 001352         1016 RILSTAYLRPTTSCLHVYPHAI-AAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1068 (1093)
Q Consensus      1016 ~~~~~~~~~~~~~~~~v~~~~~-~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~ 1068 (1093)
                      ......+..        ..++. +-.+  ....+.....+.+.+|++.....-|
T Consensus       546 ~~~~~~~~~--------~~~~~~~~~~--~~~~~~~~~~~~l~~WNll~~~l~w  589 (792)
T KOG1963|consen  546 TEGSRNWPI--------AELLFTAQTQ--NDGALVHATQQRLSVWNLLSMSLIW  589 (792)
T ss_pred             cccccccch--------HhHhhhcccc--cccceeeccCceEehHhhhhhheec
Confidence            554222111        11111 1122  2344555677889999998877777

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=3.3e-23  Score=220.87  Aligned_cols=275  Identities=15%  Similarity=0.213  Sum_probs=222.6

Q ss_pred             cccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeE-EE
Q 001352          732 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FA  810 (1093)
Q Consensus       732 ~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~  810 (1093)
                      .+|...|..+++.+.. .++.++.||++++|+-..+..                      +-...+  .++.+.+.+ ++
T Consensus        11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~----------------------l~~~~~--~~~~g~i~~~i~   65 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY----------------------LETHAF--EGPKGFIANSIC   65 (745)
T ss_pred             ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc----------------------ccceec--ccCcceeeccce
Confidence            4588888888876655 689999999999997322211                      110111  135555655 77


Q ss_pred             Ecc-CCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccC
Q 001352          811 LSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK  888 (1093)
Q Consensus       811 ~s~-dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~  888 (1093)
                      +.+ ++-.+++|+ |.+|.+|......+...+.+|...|+++.... ++. +++|+.|.++++|-.  +++...+++|..
T Consensus        66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a  141 (745)
T KOG0301|consen   66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA  141 (745)
T ss_pred             eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence            764 444466666 89999999999999999999999999999887 665 899999999999976  467777999999


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCc
Q 001352          889 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL  968 (1093)
Q Consensus       889 ~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~  968 (1093)
                      .|+++++-|++ .++|||.|++|++|.-.+       .++++.+|..   .|+.+++-+++.+|-++.||.|++|++ +|
T Consensus       142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g  209 (745)
T KOG0301|consen  142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG  209 (745)
T ss_pred             heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence            99999999987 899999999999998755       7788889886   899999999999999999999999999 78


Q ss_pred             ceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEE
Q 001352          969 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1048 (1093)
Q Consensus       969 ~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~ 1048 (1093)
                      +++.. ..+|..-|.++...+++..++++++|+++++|+..  ++...+.    +|..    .+++  +.+-+  +.-++
T Consensus       210 e~l~~-~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPtt----siWs--a~~L~--NgDIv  274 (745)
T KOG0301|consen  210 EVLLE-MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPTT----SIWS--AKVLL--NGDIV  274 (745)
T ss_pred             ceeee-eeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCcc----ceEE--EEEee--CCCEE
Confidence            88887 56899999999988999999999999999999987  6665555    3332    3554  33333  34699


Q ss_pred             EEeCCCcEEEEecC
Q 001352         1049 VGLTNGEVYVIEPN 1062 (1093)
Q Consensus      1049 ~~~~dg~v~~w~~~ 1062 (1093)
                      +|+.||.|+||-..
T Consensus       275 vg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  275 VGGSDGRVRVFTVD  288 (745)
T ss_pred             EeccCceEEEEEec
Confidence            99999999999875

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=1.8e-23  Score=213.11  Aligned_cols=262  Identities=17%  Similarity=0.262  Sum_probs=210.2

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC-CCE
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSL  411 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d-g~~  411 (1093)
                      .|.++|+.+.+-|....++|+++..+.|.|||..+-.-.....      ..|.   ....+.||...=..++|++. .-+
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~------~~~~---Pdl~L~gH~~eg~glsWn~~~~g~  192 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS------GECR---PDLRLKGHEKEGYGLSWNRQQEGT  192 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc------ccCC---CceEEEeeccccccccccccccee
Confidence            4889999999999999899999999999999997643322100      0011   11238899998888999995 458


Q ss_pred             EEEEEcCCEEEEEEccCCCc----ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC--CCceeEEeecC
Q 001352          412 LGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFEGH  485 (1093)
Q Consensus       412 las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~--~~~~~~~~~~h  485 (1093)
                      |++++.|++|++||+.....    +.....+.+|...|..++|++-... ++++++.|+.+.|||++  +.++.+...+|
T Consensus       193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah  271 (422)
T KOG0264|consen  193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVKAH  271 (422)
T ss_pred             EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCccccccc
Confidence            89999999999999986543    5566678899999999999998776 79999999999999999  56677788899


Q ss_pred             CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEE-EEecCCCCceeEEEEeC
Q 001352          486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLF-SCGTSKEGESFLVEWNE  563 (1093)
Q Consensus       486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~-~~~~~~~~~~~i~iwd~  563 (1093)
                      .++|++++|+|.. +..||+||.|++|.+||+++... ...+..|...|..+.|||....++ +++.    ++.+.+||+
T Consensus       272 ~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~rl~vWDl  346 (422)
T KOG0264|consen  272 SAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRRLNVWDL  346 (422)
T ss_pred             CCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCcEEEEec
Confidence            9999999999875 57999999999999999998654 568899999999999999776554 4443    778999998


Q ss_pred             CCCeeee-----------eeecccccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECC
Q 001352          564 SEGAIKR-----------TYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN  609 (1093)
Q Consensus       564 ~~~~~~~-----------~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~  609 (1093)
                      ..-...+           .+-.|..|...|..+.|+|+..++++ .++|+.+.||...
T Consensus       347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            7432221           12223334488999999999887665 8899999999975

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=1.2e-23  Score=214.82  Aligned_cols=290  Identities=14%  Similarity=0.188  Sum_probs=230.5

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      .+| .|..-|.++++|...++ +.+|+. |.|+|||+.......              +....-......-|.++..+||
T Consensus       414 ~tL-~HGEvVcAvtIS~~trh-VyTgGk-gcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~pd  476 (705)
T KOG0639|consen  414 NTL-AHGEVVCAVTISNPTRH-VYTGGK-GCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLLPD  476 (705)
T ss_pred             hhh-ccCcEEEEEEecCCcce-eEecCC-CeEEEeeccCCCCCC--------------ccccccccCcccceeeeEecCC
Confidence            344 47778888999999886 788876 889999996542110              1111002234578999999999


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  488 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  488 (1093)
                      |+.|++|+.-.++.|||+..... +...++..-.-...+++.+||.+  +.+++..||.|.|||+.....++.|+||...
T Consensus       477 grtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDG  553 (705)
T KOG0639|consen  477 GRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG  553 (705)
T ss_pred             CceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCC
Confidence            99999999999999999987543 22223333344677899999999  8999999999999999999999999999999


Q ss_pred             eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001352          489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  568 (1093)
Q Consensus       489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~  568 (1093)
                      +.||.+  +.||..|.+|+-|++||.||++.+....... ....|.++.++|.+.++++|-.    .+.+.+.... +..
T Consensus       554 ascIdi--s~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-kp~  625 (705)
T KOG0639|consen  554 ASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-KPE  625 (705)
T ss_pred             ceeEEe--cCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecC-Ccc
Confidence            999988  5688999999999999999999877665443 3457899999999999999875    4446666643 333


Q ss_pred             eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352          569 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  648 (1093)
Q Consensus       569 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  648 (1093)
                      ...+..|.   ..|.++.|.+.|+++++.+.|+-+..|...-|..+......   ..|.++.+|.|.+++++|+.|..-.
T Consensus       626 kyqlhlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkAT  699 (705)
T KOG0639|consen  626 KYQLHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKAT  699 (705)
T ss_pred             ceeecccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceE
Confidence            34444444   89999999999999999999999999999888877666533   4689999999999999999998888


Q ss_pred             EEEc
Q 001352          649 ILET  652 (1093)
Q Consensus       649 iw~~  652 (1093)
                      +|.+
T Consensus       700 VYeV  703 (705)
T KOG0639|consen  700 VYEV  703 (705)
T ss_pred             EEEE
Confidence            8865

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=195.99  Aligned_cols=299  Identities=15%  Similarity=0.215  Sum_probs=224.5

Q ss_pred             CchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE
Q 001352          322 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  401 (1093)
Q Consensus       322 ~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  401 (1093)
                      .+|..+..+|....  -.|+.||+.|. +||+|..||.|.|||..|...-+.                   +.+|..+|+
T Consensus        12 ~~PEel~~tld~~~--a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~   69 (405)
T KOG1273|consen   12 EYPEELTHTLDNPL--AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPIT   69 (405)
T ss_pred             cChHhhceeccCCc--cceEEeccCcc-eeeeeccCCcEEEEEccccchhhh-------------------hhcccccee
Confidence            66777777887332  78999999998 599999999999999998764433                   788999999


Q ss_pred             EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352          402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  481 (1093)
Q Consensus       402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  481 (1093)
                      +++||+||+.|+++|.|..|++||+..|.+++.+    ....+|+.+.|.|-..+..+++- .+..-.+-++..++.. .
T Consensus        70 sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~-~  143 (405)
T KOG1273|consen   70 SLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHS-V  143 (405)
T ss_pred             EEEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCcee-e
Confidence            9999999999999999999999999999877643    25679999999998776444443 3444555555542211 1


Q ss_pred             ee-cCCCCeEEe--eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCcee
Q 001352          482 FE-GHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESF  557 (1093)
Q Consensus       482 ~~-~h~~~v~~~--~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~  557 (1093)
                      +. ...+..+..  +-..++.|+++++|...|.+.++|..+.+.+..+.... ..|..+.++..|+.++..+.    +..
T Consensus       144 Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRv  219 (405)
T KOG1273|consen  144 LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRV  219 (405)
T ss_pred             ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cce
Confidence            11 111111111  11235677899999999999999999998888776665 68999999999999999876    778


Q ss_pred             EEEEeCCC-------Cee--eeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCc
Q 001352          558 LVEWNESE-------GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENP  627 (1093)
Q Consensus       558 i~iwd~~~-------~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  627 (1093)
                      |+.|+++.       ++.  .+.++..- ....-.+++|+.+|.|+++++ ....++||....|.+++.+.+..+ ....
T Consensus       220 IR~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~  297 (405)
T KOG1273|consen  220 IRTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELL  297 (405)
T ss_pred             EEEEehhhhcccCccCCcChhHHHHHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hhee
Confidence            99998762       111  12222111 123456789999999998866 567899999999999999987654 3467


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352          628 RICFNKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       628 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      .+.|+|-...+++. ..|.+++|.....
T Consensus       298 DV~whp~rp~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  298 DVNWHPVRPIIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             ecccccceeeeeec-cCCceEEEEeecc
Confidence            88999988777777 6799999987643

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.8e-23  Score=193.47  Aligned_cols=254  Identities=16%  Similarity=0.214  Sum_probs=203.9

Q ss_pred             hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC--C
Q 001352          331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--D  408 (1093)
Q Consensus       331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--d  408 (1093)
                      -.+|.+-|..+...--|++ |||++.|++|+|+.+.+.....-                ...|.||.++|..++|..  -
T Consensus         7 dt~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~l----------------l~~L~Gh~GPVwqv~wahPk~   69 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSKL----------------LAELTGHSGPVWKVAWAHPKF   69 (299)
T ss_pred             hhhhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCcee----------------eeEecCCCCCeeEEeeccccc
Confidence            3478889999999999996 99999999999999987654211                112889999999999987  7


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-c--eeEEeecC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-S--RTYSFEGH  485 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~--~~~~~~~h  485 (1093)
                      |.+||+++.||.|.||.-++|+ ..+......|...|++++|.|.+-.+.|++++.||.|.|.+.++. .  ..+....|
T Consensus        70 G~iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH  148 (299)
T KOG1332|consen   70 GTILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH  148 (299)
T ss_pred             CcEeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence            9999999999999999999884 444446778999999999999988889999999999999987654 2  22345679


Q ss_pred             CCCeEEeeecccCC-c-----------cEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccCC----CEEEE
Q 001352          486 GAPVYSLCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RRLFS  547 (1093)
Q Consensus       486 ~~~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~d~----~~l~~  547 (1093)
                      .-.|++++|.|..- |           ..|++|+.|..|+||+.++..-  ...+..|...|+.++|.|.-    .++++
T Consensus       149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS  228 (299)
T KOG1332|consen  149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS  228 (299)
T ss_pred             ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE
Confidence            99999999987521 1           5699999999999999987632  23578899999999999964    47888


Q ss_pred             EecCCCCceeEEEEeCCCC--eee-eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001352          548 CGTSKEGESFLVEWNESEG--AIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  609 (1093)
Q Consensus       548 ~~~~~~~~~~i~iwd~~~~--~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~  609 (1093)
                      |+.    ++.+.||.....  ... ..+....   ..+..+.|++.|+.|++++.|+.|.+|.-.
T Consensus       229 ~Sq----Dg~viIwt~~~e~e~wk~tll~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  229 CSQ----DGTVIIWTKDEEYEPWKKTLLEEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             ecC----CCcEEEEEecCccCcccccccccCC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            876    667999976521  111 1122222   679999999999999999999999999754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=4.5e-23  Score=210.66  Aligned_cols=283  Identities=12%  Similarity=0.160  Sum_probs=223.4

Q ss_pred             ccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc
Q 001352          733 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  812 (1093)
Q Consensus       733 ~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  812 (1093)
                      .|..-|.++++|...+++.+++. |.|+|||+.....                     ......+......+.++++.+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~---------------------k~PvsqLdcl~rdnyiRSckL~  474 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN---------------------KSPVSQLDCLNRDNYIRSCKLL  474 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC---------------------CCccccccccCcccceeeeEec
Confidence            37788899999999998887765 5899999864311                     0111112222356788999999


Q ss_pred             cCCCEEEEEeC-CeEEEEEccCcee--EEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCC
Q 001352          813 KNDAYLFSASG-GVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR  889 (1093)
Q Consensus       813 ~dg~~la~~~d-g~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~  889 (1093)
                      |||+.|++|+. .++.|||+..-..  ...+........+++.+| |.++.++++.||.|.|||+.+...++.|+||.+.
T Consensus       475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG  553 (705)
T KOG0639|consen  475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG  553 (705)
T ss_pred             CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCC
Confidence            99999999985 8899999986543  333443445677899999 9999999999999999999999999999999999


Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCc
Q 001352          890 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEEL  968 (1093)
Q Consensus       890 V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~  968 (1093)
                      +.|+.+++||..|-||+-|.+||-||+..+....     ...-.    ..|.++..+|.+.+|++| .++.+.|......
T Consensus       554 ascIdis~dGtklWTGGlDntvRcWDlregrqlq-----qhdF~----SQIfSLg~cP~~dWlavGMens~vevlh~skp  624 (705)
T KOG0639|consen  554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ-----QHDFS----SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP  624 (705)
T ss_pred             ceeEEecCCCceeecCCCccceeehhhhhhhhhh-----hhhhh----hhheecccCCCccceeeecccCcEEEEecCCc
Confidence            9999999999999999999999999998854221     11111    258899999999999997 5567888776544


Q ss_pred             ceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEE
Q 001352          969 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1048 (1093)
Q Consensus       969 ~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~ 1048 (1093)
                      +.-.  ..-|...|.++.|++.|+++++.+.|.-+-.|...-|..+....         ..+.|.++.++++   .++++
T Consensus       625 ~kyq--lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVlsCDIS~d---dkyIV  690 (705)
T KOG0639|consen  625 EKYQ--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVLSCDISFD---DKYIV  690 (705)
T ss_pred             ccee--ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcceeeeeccC---ceEEE
Confidence            4322  44589999999999999999999999999999999997774443         2445776767665   58999


Q ss_pred             EEeCCCcEEEEec
Q 001352         1049 VGLTNGEVYVIEP 1061 (1093)
Q Consensus      1049 ~~~~dg~v~~w~~ 1061 (1093)
                      ||+.|..-.+|++
T Consensus       691 TGSGdkkATVYeV  703 (705)
T KOG0639|consen  691 TGSGDKKATVYEV  703 (705)
T ss_pred             ecCCCcceEEEEE
Confidence            9999998888876

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.4e-22  Score=204.25  Aligned_cols=288  Identities=14%  Similarity=0.215  Sum_probs=234.1

Q ss_pred             CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC-EEE
Q 001352          335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLG  413 (1093)
Q Consensus       335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~-~la  413 (1093)
                      .+.|+++.|+|.-. +|.+++.||+++||.+.........+                 +.--..+|.+.+|.|+|. .++
T Consensus       213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~  274 (514)
T KOG2055|consen  213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIF  274 (514)
T ss_pred             cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEE
Confidence            34999999999998 78999999999999987543322111                 112457899999999999 899


Q ss_pred             EEEcCCEEEEEEccCCCcccceEEecccc-ccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEe
Q 001352          414 VAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  492 (1093)
Q Consensus       414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  492 (1093)
                      +++....++.||+.+.+..+ +..+.++. ..+.....|++++  +|+..|..|.|.+-...+++.+.+++ -.+.|..+
T Consensus       275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~  350 (514)
T KOG2055|consen  275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF  350 (514)
T ss_pred             ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence            99999999999999977433 33444554 3577888999999  89999999999999999999999887 67789999


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC------
Q 001352          493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------  565 (1093)
Q Consensus       493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~------  565 (1093)
                      +|+  .+++.|++++.+|.|.+||++.......+...++ .-++++.+++|.++|+|+.    .|.|.|||.++      
T Consensus       351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~  424 (514)
T KOG2055|consen  351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN  424 (514)
T ss_pred             EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence            995  5778999999999999999999988887766554 4578889999999999986    77899999653      


Q ss_pred             CeeeeeeecccccCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEecC-CCCCCCceEEEecCCCEEEEEE
Q 001352          566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIA  642 (1093)
Q Consensus       566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~  642 (1093)
                      .+++..+....   ..|.++.|+++.+.|+.+|  ....+++-++.+......++.. .....++|++|||.+.++|+|.
T Consensus       425 PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN  501 (514)
T KOG2055|consen  425 PKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN  501 (514)
T ss_pred             CCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence            34555555555   7899999999999988876  5678999998887776666543 3345689999999999999999


Q ss_pred             CCCeEEEEEcC
Q 001352          643 NENRIKILETP  653 (1093)
Q Consensus       643 ~dg~i~iw~~~  653 (1093)
                      .+|.+.+|.+.
T Consensus       502 e~grv~l~kL~  512 (514)
T KOG2055|consen  502 EAGRVHLFKLH  512 (514)
T ss_pred             CCCceeeEeec
Confidence            99999999874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=5.4e-21  Score=209.58  Aligned_cols=289  Identities=11%  Similarity=0.054  Sum_probs=212.2

Q ss_pred             EEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE-EEEEcCCEEEEEEccC
Q 001352          350 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHG  428 (1093)
Q Consensus       350 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l-as~~~d~~i~iwd~~~  428 (1093)
                      ++++++.|+.|++||+.+++.+..                   +..+ ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~   62 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT   62 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence            688999999999999999887654                   3333 346789999999987 5667889999999998


Q ss_pred             CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEec
Q 001352          429 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV  508 (1093)
Q Consensus       429 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~  508 (1093)
                      ++...   .+..+.. +..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++++  +++.++++++.
T Consensus        63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~--~dg~~l~~~~~  134 (300)
T TIGR03866        63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS--PDGKIVVNTSE  134 (300)
T ss_pred             CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC--CCCCEEEEEec
Confidence            86544   3433433 567899999984 345556789999999999888877753 3345677774  46778888887


Q ss_pred             CC-eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc----cCCCeE
Q 001352          509 DG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVS  583 (1093)
Q Consensus       509 dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~  583 (1093)
                      ++ .+.+||..+......... ......++|+|+++++++++.   .++.|.+||+.+++.+..+..+..    ......
T Consensus       135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  210 (300)
T TIGR03866       135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV  210 (300)
T ss_pred             CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence            65 567789877655443322 234577999999998876542   256799999999988776643210    011235


Q ss_pred             EEEEcCCCCEEEE-EeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEEcCCCceeeec
Q 001352          584 VVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAA  661 (1093)
Q Consensus       584 ~v~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~  661 (1093)
                      .++|+|+++++++ .+.++.+.+||..+++....+...   ..+.+++|+|+|++|+++ ..+|.|.+||..+++.+..+
T Consensus       211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI  287 (300)
T ss_pred             ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            6889999998655 456778999999998887665432   247899999999999886 45899999999999888777


Q ss_pred             ccccccceeeeec
Q 001352          662 GVLSDNLRKLSVN  674 (1093)
Q Consensus       662 ~~~~~~i~~~~~~  674 (1093)
                      +.. ...+.++++
T Consensus       288 ~~~-~~~~~~~~~  299 (300)
T TIGR03866       288 KVG-RLPWGVVVR  299 (300)
T ss_pred             Ecc-cccceeEeC
Confidence            653 333555554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=1.1e-20  Score=207.20  Aligned_cols=279  Identities=18%  Similarity=0.237  Sum_probs=202.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEE-EEEECCCeEEEEEcCCCceeeeccccccccee
Q 001352          592 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK  670 (1093)
Q Consensus       592 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~  670 (1093)
                      ..+++++.|+.+++||+.+++.+..+..+.   .+..++|+|+++.+ ++++.++.|++|+..+++....+.        
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------   70 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--------   70 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------
Confidence            467888999999999999999888887543   25789999999876 456678899999876542211100        


Q ss_pred             eeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceE
Q 001352          671 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI  750 (1093)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  750 (1093)
                                                                                                      
T Consensus        71 --------------------------------------------------------------------------------   70 (300)
T TIGR03866        71 --------------------------------------------------------------------------------   70 (300)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEE
Q 001352          751 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISL  828 (1093)
Q Consensus       751 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~i  828 (1093)
                                                                         ....+..++++|+++.++++.  ++.+++
T Consensus        71 ---------------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~   99 (300)
T TIGR03866        71 ---------------------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTV   99 (300)
T ss_pred             ---------------------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEE
Confidence                                                               000123466778877665543  578999


Q ss_pred             EEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEE-e
Q 001352          829 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-G  906 (1093)
Q Consensus       829 wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~-s  906 (1093)
                      ||+.+++.+..+.. ...+.+++|+| +++++++++.++ .+.+||..+++....+.. ...+.+++|+|++++|+.+ .
T Consensus       100 ~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866       100 IDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             EECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence            99988877777653 33467899999 899999888775 567789988877655432 3346789999999988544 4


Q ss_pred             CCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE--EeCCeEEEEEcCCcceeeeeecCCCCCEEE
Q 001352          907 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQ  984 (1093)
Q Consensus       907 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~  984 (1093)
                      .++.|++||+.+++............+.. ......++|+|+++++++  +.++.+.+||..+++.+....  +...+.+
T Consensus       177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~  253 (300)
T TIGR03866       177 IGGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQ  253 (300)
T ss_pred             CCCEEEEEEcCcceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcce
Confidence            69999999999876433211111111100 112457899999998655  456789999999888776543  3457889


Q ss_pred             EEEccCCCEEEEE-eCCCcEEEEEcCCCceEEEec
Q 001352          985 ATFSCDCRMVFTS-FVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       985 ~~fs~dg~~l~t~-~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                      ++|+|+|++|+++ +.+|.|.+||+.+++.+.++.
T Consensus       254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            9999999999876 468999999999999988886

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.90  E-value=2.7e-21  Score=204.07  Aligned_cols=450  Identities=13%  Similarity=0.137  Sum_probs=290.6

Q ss_pred             cEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce
Q 001352          444 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR  523 (1093)
Q Consensus       444 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  523 (1093)
                      .|..++|-|||.+++++.   +..+.+||...|..++++++|...|+++++  +.||+.+++|+.|..|.+|.-.-.+. 
T Consensus        14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~-   87 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGI-   87 (1081)
T ss_pred             chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEE--ccCCceeccCCCceeEEEecccccce-
Confidence            799999999999744433   346999999999999999999999999999  56889999999999999996543222 


Q ss_pred             EEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcE
Q 001352          524 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI  603 (1093)
Q Consensus       524 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i  603 (1093)
                      .. -.|+..|.|+.|+|-...|++|+-+.     .-+|........+. +.    ...+.+++|..||++++.|-.+|+|
T Consensus        88 Lk-YSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~K~-ks----s~R~~~CsWtnDGqylalG~~nGTI  156 (1081)
T KOG1538|consen   88 LK-YSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVSKH-KS----SSRIICCSWTNDGQYLALGMFNGTI  156 (1081)
T ss_pred             ee-eccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHHhh-hh----heeEEEeeecCCCcEEEEeccCceE
Confidence            22 34777899999999999999998532     66888665443222 11    2568999999999999999999999


Q ss_pred             EEEECCCCceEEEEecCCCCCCCceEEEecCC-----CEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCc
Q 001352          604 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-----TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST  678 (1093)
Q Consensus       604 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~  678 (1093)
                      .+-+....+....-...+...+|.+++|+|..     ..+++.....++.++.+... .+..-+...-.-.|+.+     
T Consensus       157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisY-----  230 (1081)
T KOG1538|consen  157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISY-----  230 (1081)
T ss_pred             EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccCCCCchhhee-----
Confidence            99875444444433444556789999999953     35777777777777776532 33322222222223333     


Q ss_pred             eeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccce
Q 001352          679 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV  758 (1093)
Q Consensus       679 ~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~  758 (1093)
                                       .++|.+++.|+.|+.+.+|..+.-..+   .  ..  .....|..++..|+++.++.++.||+
T Consensus       231 -----------------f~NGEy~LiGGsdk~L~~fTR~GvrLG---T--vg--~~D~WIWtV~~~PNsQ~v~~GCqDGT  286 (1081)
T KOG1538|consen  231 -----------------FTNGEYILLGGSDKQLSLFTRDGVRLG---T--VG--EQDSWIWTVQAKPNSQYVVVGCQDGT  286 (1081)
T ss_pred             -----------------ccCCcEEEEccCCCceEEEeecCeEEe---e--cc--ccceeEEEEEEccCCceEEEEEccCe
Confidence                             378888999999999888874311100   0  01  14568999999999999999999999


Q ss_pred             eEEeeecCcccCc---------------------Cc---------------------ccccccCCcccCCCCCCceeecc
Q 001352          759 HLMWRWPRNDLTL---------------------ST---------------------EATTKVPPRLYQPRHGPQFMVND  796 (1093)
Q Consensus       759 v~vw~~~~~~~~~---------------------~~---------------------~~~~~~~~~~~~~~~~~~~~~~~  796 (1093)
                      +..|++.......                     .+                     ..+....+.+|...++.. ....
T Consensus       287 iACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~-~~mh  365 (1081)
T KOG1538|consen  287 IACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDL-SDMH  365 (1081)
T ss_pred             eehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEecccccc-ccch
Confidence            9999886544300                     00                     001111223333322220 0000


Q ss_pred             CCCCC-CCCCeeEEEEccCCCEEEEEeCCeEEEEEccCcee--------EEEECCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001352          797 TTDSN-SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS  867 (1093)
Q Consensus       797 ~~~~~-~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~--------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg  867 (1093)
                      .+... -.....|--.---+..++.+.+..+..+|...-+.        ++-++...+        |.+..-|+.|..+|
T Consensus       366 Y~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~GG--------P~gREgL~vGlknG  437 (1081)
T KOG1538|consen  366 YRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIGG--------PPGREGLLVGLKNG  437 (1081)
T ss_pred             hHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhcC--------CCCcceeEEEecCC
Confidence            00000 00000111111124455555566777777653211        111111111        22556788898888


Q ss_pred             eEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEcc
Q 001352          868 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK  947 (1093)
Q Consensus       868 ~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  947 (1093)
                      .|.-.=+++.-++.. ......|.|+.++...+.||+..+.++..++|+.+++.    .++.+        .+.+++|+.
T Consensus       438 qV~kiF~dN~~PiLl-~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp--------g~nSV~wNT  504 (1081)
T KOG1538|consen  438 QVLKIFVDNLFPILL-LKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP--------GANSVAWNT  504 (1081)
T ss_pred             cEEEEEecCCchhhe-ecccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC--------CCceEEeec
Confidence            665433444333322 22456799999999999999999999999999999763    33332        477899988


Q ss_pred             CCCEEEE-EeCCeEEE
Q 001352          948 DQTRFLL-VHETHLAI  962 (1093)
Q Consensus       948 dg~~l~~-~~d~~i~v  962 (1093)
                      ...-+++ +..|.+.|
T Consensus       505 ~~E~MlcfT~~g~L~V  520 (1081)
T KOG1538|consen  505 QCEDMLCFTGGGYLNV  520 (1081)
T ss_pred             cccceEEEecCCceEE
Confidence            7655544 55565554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=4.3e-22  Score=202.43  Aligned_cols=290  Identities=14%  Similarity=0.231  Sum_probs=224.9

Q ss_pred             CCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccce
Q 001352          624 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI  703 (1093)
Q Consensus       624 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~  703 (1093)
                      ..|+++.|+|....+++++.|++++||.+....-.        .++++.+                              
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--------~lqS~~l------------------------------  255 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--------KLQSIHL------------------------------  255 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccCh--------hheeeee------------------------------
Confidence            56999999999999999999999999988744111        0111111                              


Q ss_pred             eecccccceecceeeccCccccccccCccccccceEEEEeecCCc-eEEEeeccceeEEeeecCcccCcCcccccccCCc
Q 001352          704 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  782 (1093)
Q Consensus       704 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  782 (1093)
                                                    ...+|.+..|.|+|. .+++++....++.||+...+..+-          
T Consensus       256 ------------------------------~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~----------  295 (514)
T KOG2055|consen  256 ------------------------------EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL----------  295 (514)
T ss_pred             ------------------------------ccCccceeeecCCCceEEEecccceEEEEeeccccccccc----------
Confidence                                          345688889999999 778888888899999876543111          


Q ss_pred             ccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEE
Q 001352          783 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA  861 (1093)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la  861 (1093)
                        .+..|.           ....+....+||++++|+..+ .|.|.+....+++.+..++ -.+.|..++|+. |++.|+
T Consensus       296 --~~~~g~-----------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~  360 (514)
T KOG2055|consen  296 --KPPYGV-----------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELL  360 (514)
T ss_pred             --cCCCCc-----------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEE
Confidence              111111           234567788999999999998 5999999999999998887 667899999998 889999


Q ss_pred             EEeCCCeEEEEEcCCcceeeecccccC-CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee-eeeeeecCCCcccCCCC
Q 001352          862 IGMDDSTILIYNARSSEVISKLEGHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPS  939 (1093)
Q Consensus       862 sg~~dg~i~iwd~~~~~~~~~l~~h~~-~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~  939 (1093)
                      +.+.+|.|.+||+....++.++....+ .-++++.|++|.+||+|+..|.|.|||.++.-.. ..+++.....-.   ..
T Consensus       361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~  437 (514)
T KOG2055|consen  361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TA  437 (514)
T ss_pred             EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---ee
Confidence            999999999999999999988874322 2356788899999999999999999997762211 112333332222   37


Q ss_pred             ceEEEEccCCCEEEEE---eCCeEEEEEcCCcceeeeeecCC--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001352          940 ETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus       940 v~~~~~s~dg~~l~~~---~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
                      |++++|+||+++||++   ..+.+++-.+.+......|....  -+.|++++|||.|.+|+.|..+|.|.+|.+.
T Consensus       438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            9999999999999984   46789999998888777765433  5689999999999999999999999999874

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.3e-22  Score=204.02  Aligned_cols=293  Identities=15%  Similarity=0.201  Sum_probs=230.1

Q ss_pred             EEEEEccCC-cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCC-CCCeEEEEECCCCCEEEEEE-cCCEEEEEEc
Q 001352          350 LLLVGTNVG-DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY  426 (1093)
Q Consensus       350 llasg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~s~dg~~las~~-~d~~i~iwd~  426 (1093)
                      ++.+++.|. ++.+||+.||.....                   +++. ...-.++.. -.+.|++++. ....+.+|.+
T Consensus         9 ~~sssS~d~~~~~~~dl~TGt~~~~-------------------ykg~~~a~~~sl~~-l~~~yllsaq~~rp~l~vw~i   68 (476)
T KOG0646|consen    9 VCSSSSFDPINCIVWDLRTGTSLLQ-------------------YKGSYLAQAASLTA-LNNEYLLSAQLKRPLLHVWEI   68 (476)
T ss_pred             EEeccCCCCcceeEEecCCCceeEE-------------------ecCcccccchhhhh-hchhheeeecccCcccccccc
Confidence            344455554 499999999987654                   1111 000001110 0246777774 3457999999


Q ss_pred             cCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEE
Q 001352          427 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI  506 (1093)
Q Consensus       427 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~  506 (1093)
                      .......+.   .--.++|.+++-+|+|.  +|+.|+..|.|++|.+.+|..+..+.+|-..|+++.|  +.||.+|++|
T Consensus        69 ~k~~~~~q~---~v~Pg~v~al~s~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f--s~dgs~iiTg  141 (476)
T KOG0646|consen   69 LKKDQVVQY---IVLPGPVHALASSNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF--SDDGSHIITG  141 (476)
T ss_pred             Cchhhhhhh---cccccceeeeecCCCce--EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE--eCCCcEEEec
Confidence            875544322   23467899999999998  7888889999999999999999999999999999999  6688999999


Q ss_pred             ecCCeEEEEEcC---------CCCceEEecCCCCceEEEEEccC--CCEEEEEecCCCCceeEEEEeCCCCeeeeeeecc
Q 001352          507 SVDGKIKAWLYD---------SLGARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  575 (1093)
Q Consensus       507 ~~dg~i~vwd~~---------~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  575 (1093)
                      +.||.|.+|.+.         +......+..|.-+|+.+...+.  ..++++++.    |.++++||+..|.++.++...
T Consensus       142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~LLlti~fp  217 (476)
T KOG0646|consen  142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGVLLLTITFP  217 (476)
T ss_pred             CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC----CceEEEEEeccceeeEEEecC
Confidence            999999999763         33456678888889999887765  457888876    788999999999998888764


Q ss_pred             cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----------------eEEEEecCCCCCCCceEEEecCCCEEE
Q 001352          576 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ----------------LLTTIDAGGGLPENPRICFNKNGTLLA  639 (1093)
Q Consensus       576 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~~v~~v~~s~~~~~l~  639 (1093)
                          ..+.+++.+|.+..+++|+++|.|.+.++..-.                .+..+.++.....|+|++++-||.+|+
T Consensus       218 ----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl  293 (476)
T KOG0646|consen  218 ----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL  293 (476)
T ss_pred             ----CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence                489999999999999999999999998875422                234445555545899999999999999


Q ss_pred             EEECCCeEEEEEcCCCceeeecccccccceeeeecCCC
Q 001352          640 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS  677 (1093)
Q Consensus       640 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~  677 (1093)
                      +|+.||.+.|||..+.+.++++....++|+.+.+.|..
T Consensus       294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             eeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence            99999999999999999999988888899988887653

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.2e-21  Score=189.68  Aligned_cols=272  Identities=14%  Similarity=0.099  Sum_probs=213.2

Q ss_pred             CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC
Q 001352          395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  474 (1093)
Q Consensus       395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  474 (1093)
                      ...+.|+++.|+|.+..|++++.||++++||+...+...    .-.|..++.+++|.++.+   +++|+.||.|+.+|+.
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln   83 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN   83 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence            357889999999999999999999999999999874333    225999999999999765   8999999999999999


Q ss_pred             CCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001352          475 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  554 (1093)
Q Consensus       475 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~  554 (1093)
                      ++.... +..|..+|.++...+..  ..+++|+.|++|++||.+.......+.... .|.++..  .|+.|++++.    
T Consensus        84 ~~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----  153 (323)
T KOG1036|consen   84 TGNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----  153 (323)
T ss_pred             CCccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----
Confidence            988654 44699999999987544  479999999999999998754444444433 6666654  4667777665    


Q ss_pred             ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEEEecCCC-------C
Q 001352          555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------L  623 (1093)
Q Consensus       555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~  623 (1093)
                      +..+.+||+++.......... .-+..+.++++-|++.-+++++-||.|.+=.++..    +....+..|..       .
T Consensus       154 ~r~v~iyDLRn~~~~~q~reS-~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~  232 (323)
T KOG1036|consen  154 DRKVLIYDLRNLDEPFQRRES-SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII  232 (323)
T ss_pred             CceEEEEEcccccchhhhccc-cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence            667999999876543321111 11367899999999999999999999988666554    33334444421       2


Q ss_pred             CCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeec
Q 001352          624 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI  684 (1093)
Q Consensus       624 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  684 (1093)
                      .+|++++|+|-...+++|+.||.|.+||..+.+.+..+......|..++|+.++..+|++.
T Consensus       233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             EEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence            3589999999999999999999999999999999998888888899999986666555443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=9.7e-22  Score=187.92  Aligned_cols=319  Identities=13%  Similarity=0.192  Sum_probs=232.3

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-CCCE
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSL  411 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-dg~~  411 (1093)
                      .|.+.|+.+...|...+++.+|+.||.|.+||++.-..-....+-. + ..|.  ....--.+|.-.|..+.|-| |...
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~-k-~~c~--v~~~h~~~Hky~iss~~WyP~DtGm  116 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA-K-HKCI--VAKQHENGHKYAISSAIWYPIDTGM  116 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee-h-eeee--ccccCCccceeeeeeeEEeeecCce
Confidence            4889999999998655579999999999999997654211000000 0 0010  11112557889999999999 6778


Q ss_pred             EEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCC-cEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352          412 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  490 (1093)
Q Consensus       412 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~-~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~  490 (1093)
                      +.+++.|.+++|||.++-+...   .+ ...+.|.+-++||-.. .-++++|..|-.|++-|+.+|.+-+++.||.+.|.
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl  192 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL  192 (397)
T ss_pred             eecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence            8899999999999999865433   33 2456788888888543 33678888888999999999999999999999999


Q ss_pred             EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352          491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  570 (1093)
Q Consensus       491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~  570 (1093)
                      ++.|+|..+ -.|++|+.||.|++||++..                                  .++.++.|..+++...
T Consensus       193 aV~Wsp~~e-~vLatgsaDg~irlWDiRra----------------------------------sgcf~~lD~hn~k~~p  237 (397)
T KOG4283|consen  193 AVEWSPSSE-WVLATGSADGAIRLWDIRRA----------------------------------SGCFRVLDQHNTKRPP  237 (397)
T ss_pred             EEEeccCce-eEEEecCCCceEEEEEeecc----------------------------------cceeEEeecccCccCc
Confidence            999998754 68899999999999998752                                  1123444444433333


Q ss_pred             eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC----CCCCCCceEEEecCCCEEEEEECCCe
Q 001352          571 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----GGLPENPRICFNKNGTLLAVIANENR  646 (1093)
Q Consensus       571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~dg~  646 (1093)
                      .++....|.+.+..++|+.++.++++.+.|..+++|+..+|+....-...    .....-..+. +.+...++.--.++.
T Consensus       238 ~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~  316 (397)
T KOG4283|consen  238 ILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGS  316 (397)
T ss_pred             cccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCe
Confidence            33322334488999999999999999999999999999988654222111    0000001122 344555666666799


Q ss_pred             EEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceeccee
Q 001352          647 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  717 (1093)
Q Consensus       647 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  717 (1093)
                      +.++++.++..++.+..|...+.|.++.                      |+-+...+++.|+.+..|-..
T Consensus       317 lall~~~sgs~ir~l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  317 LALLNLLEGSFVRRLSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             EEEEEccCceEEEeeecccceeeEEeec----------------------CchhhhhccccCCcccccccc
Confidence            9999999999999999998888888775                      666778888999998888753

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=6.3e-22  Score=191.13  Aligned_cols=282  Identities=15%  Similarity=0.223  Sum_probs=214.2

Q ss_pred             eEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352          400 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  479 (1093)
Q Consensus       400 V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  479 (1093)
                      -.|+.||+.|.+||+|+.||.|.|||+.|...-+   .+.+|..+|++++||+||+  .|+|++.|..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence            7899999999999999999999999999976444   6789999999999999999  8999999999999999999999


Q ss_pred             EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC----ceEEEEEccCCCEEEEEecCCCCc
Q 001352          480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE  555 (1093)
Q Consensus       480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~v~~~~~s~d~~~l~~~~~~~~~~  555 (1093)
                      +.+. ...+|+.+.|+|......+++--... -.+-++........-....+    ...+..|.+.|+++++|..    .
T Consensus       101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K  174 (405)
T KOG1273|consen  101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K  174 (405)
T ss_pred             eEEE-ccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence            9987 78899999999987765555544333 44444444222221111111    1233468899999999975    7


Q ss_pred             eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------ceE--EEEecCCCCCCC
Q 001352          556 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------QLL--TTIDAGGGLPEN  626 (1093)
Q Consensus       556 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v  626 (1093)
                      |.+.++|..+-+++..++-..  ...|..+.++..|.+++.-+.|+.||.|++..-       +..  +.+..--....-
T Consensus       175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W  252 (405)
T KOG1273|consen  175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW  252 (405)
T ss_pred             ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence            789999999999988877544  367899999999999999999999999998631       110  111100011224


Q ss_pred             ceEEEecCCCEEEEEEC-CCeEEEEEcCCCceeeeccccc-ccceeeeecCCCceeeeeccCCceEecCCCCCCCcccee
Q 001352          627 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  704 (1093)
Q Consensus       627 ~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  704 (1093)
                      .+++|+.+|.+++.++. ...++||....+..++.+.|.. +....+.+.|....                      +++
T Consensus       253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~----------------------i~s  310 (405)
T KOG1273|consen  253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI----------------------IAS  310 (405)
T ss_pred             hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceee----------------------eee
Confidence            67899999999988765 5789999999999999999877 55666677654333                      333


Q ss_pred             ecccccceeccee
Q 001352          705 VEAENKSEVEKPL  717 (1093)
Q Consensus       705 ~~~d~~i~~w~~~  717 (1093)
                      - ..|.+.+|...
T Consensus       311 i-~sg~v~iw~~~  322 (405)
T KOG1273|consen  311 I-ASGVVYIWAVV  322 (405)
T ss_pred             c-cCCceEEEEee
Confidence            3 55889999854

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=6.4e-22  Score=201.93  Aligned_cols=255  Identities=16%  Similarity=0.164  Sum_probs=206.9

Q ss_pred             ceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEcc
Q 001352          348 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH  427 (1093)
Q Consensus       348 ~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~  427 (1093)
                      .|++++-..-..+.+|.+........                ..+   -.++|.|++-+|+|.+|+.|+..|.|++|.+.
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q----------------~~v---~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels  111 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQ----------------YIV---LPGPVHALASSNLGYFLLAGTISGNLYLWELS  111 (476)
T ss_pred             hheeeecccCccccccccCchhhhhh----------------hcc---cccceeeeecCCCceEEEeecccCcEEEEEec
Confidence            35555544556788888876554431                111   34689999999999999999999999999999


Q ss_pred             CCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC---------CCceeEEeecCCCCeEEeeecccC
Q 001352          428 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---------TGSRTYSFEGHGAPVYSLCPHAKE  498 (1093)
Q Consensus       428 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---------~~~~~~~~~~h~~~v~~~~~~~~~  498 (1093)
                      +|..+.   .+.+|-..|+|+.|+.||.  +++|||.||.|.+|++.         +-++++.|..|.-+|+++...+.+
T Consensus       112 sG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg  186 (476)
T KOG0646|consen  112 SGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG  186 (476)
T ss_pred             cccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC
Confidence            998777   5678999999999999999  89999999999999763         346788999999999999987776


Q ss_pred             CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-------------
Q 001352          499 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-------------  565 (1093)
Q Consensus       499 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-------------  565 (1093)
                      -..+++++|.|.++++||+..+..+..+..+ ..+.+++.+|-++.+++|+.    ++.|.+.++..             
T Consensus       187 ~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~  261 (476)
T KOG0646|consen  187 TNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGR  261 (476)
T ss_pred             ccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCC----cceEEeeehhcCCccccccccccc
Confidence            6679999999999999999998777666543 47899999999999999986    56677665432             


Q ss_pred             ---CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC
Q 001352          566 ---GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  634 (1093)
Q Consensus       566 ---~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  634 (1093)
                         +..+..+.||.. ...|+|++++-||..|++|+.||.|+|||+.+.++++++...  .++|+.+.+.|-
T Consensus       262 ~~~~t~~~~~~Gh~~-~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~  330 (476)
T KOG0646|consen  262 HEENTQINVLVGHEN-ESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPL  330 (476)
T ss_pred             ccccceeeeeccccC-CcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeecc
Confidence               234556677761 138999999999999999999999999999999999888632  345888888664

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=1.3e-21  Score=199.61  Aligned_cols=253  Identities=19%  Similarity=0.326  Sum_probs=202.6

Q ss_pred             ecCCCCCeEEEEECCCC-CEEEEEEcCCEEEEEEccCCCcc-------cceEEeccccccEEEEEeeCCCCcEEEEEEcC
Q 001352          393 VRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSDA-------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD  464 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg-~~las~~~d~~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~  464 (1093)
                      ...|.+.|+.+.+-|.. ..+|+.+..+.|.|||...-...       +....+.||...-..++|++.... .+++++.
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~  198 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD  198 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence            34599999999999955 56677788889999998753322       233368899998888999998766 7999999


Q ss_pred             CCcEEEEECCCCc-------eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC--CCCceEEecCCCCceEE
Q 001352          465 DKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--SLGARVDYDAPGLGCTR  535 (1093)
Q Consensus       465 d~~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~  535 (1093)
                      |++|++||+....       ....+.+|...|..++|++... .++++++.|+.+.+||++  +.+.......|...+.+
T Consensus       199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~  277 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC  277 (422)
T ss_pred             CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence            9999999987543       2456789999999999998754 689999999999999999  55566678889999999


Q ss_pred             EEEccCCC-EEEEEecCCCCceeEEEEeCCCC-eeeeeeecccccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 001352          536 MAYSANGR-RLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ  612 (1093)
Q Consensus       536 ~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~~~~~  612 (1093)
                      ++|+|-+. .||+++.    +++|.+||+++- +.+.++.+|.   ..|.+|.|+|... .+++++.|+.+.|||+..-.
T Consensus       278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig  350 (422)
T KOG0264|consen  278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG  350 (422)
T ss_pred             EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence            99999655 5556554    778999999875 4567777777   9999999999864 56668899999999987522


Q ss_pred             eE------------EEEecCCCCCCCceEEEecCCC-EEEEEECCCeEEEEEcCC
Q 001352          613 LL------------TTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPE  654 (1093)
Q Consensus       613 ~~------------~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~  654 (1093)
                      ..            -.+...++...|..+.|+|+.. .+++++.|+.+.||.+..
T Consensus       351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            21            2244556777899999999765 577789999999999874

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=1.2e-21  Score=204.91  Aligned_cols=323  Identities=12%  Similarity=0.167  Sum_probs=244.2

Q ss_pred             CccCCchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCC
Q 001352          318 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG  397 (1093)
Q Consensus       318 ~~~~~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  397 (1093)
                      ..+..||..|...+.||++.|.|+...|.|. +||+|+.||+|+||.+.||.++.+..+                    .
T Consensus       383 ~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~--------------------d  441 (733)
T KOG0650|consen  383 KDLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQF--------------------D  441 (733)
T ss_pred             hhcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEee--------------------c
Confidence            3456677788888899999999999999998 599999999999999999999986443                    3


Q ss_pred             CCeEEEEECCCCC--EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEE----cCCCcEEEE
Q 001352          398 VSVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC----GDDKTIKVW  471 (1093)
Q Consensus       398 ~~V~~v~~s~dg~--~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~----~~d~~i~vw  471 (1093)
                      +.|.||+|+|.+.  .||++-... +.|-+..-|..+...     .           ...  .|+++    ..++.+..|
T Consensus       442 ~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~-----~-----------t~e--ll~~~~~~~~p~~~~~~W  502 (733)
T KOG0650|consen  442 SEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVG-----P-----------TKE--LLASAPNESEPDAAVVTW  502 (733)
T ss_pred             ceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhc-----c-----------hhh--hhhcCCCccCCcccceee
Confidence            5899999999765  455554444 666665555322210     0           001  12222    235567788


Q ss_pred             ECCCCc----eeEEeecCCCCeEEeeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001352          472 DAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  544 (1093)
Q Consensus       472 d~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~  544 (1093)
                      .-....    -++..-.|...|..+.|+.  .|.||++...+   ..|.|..+........+....+.+.++.|+|...+
T Consensus       503 ~~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~  580 (733)
T KOG0650|consen  503 SRASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPY  580 (733)
T ss_pred             chhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCce
Confidence            644211    1334446999999999965  56799887664   45888988877777777777788999999999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEEEecCCCC
Q 001352          545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGL  623 (1093)
Q Consensus       545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~  623 (1093)
                      |++++     ...|++||+..+.+++.+....   ..|..++++|.|..|++|+.|+.+..+|+.-. ++.+++..|.  
T Consensus       581 lfVaT-----q~~vRiYdL~kqelvKkL~tg~---kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~--  650 (733)
T KOG0650|consen  581 LFVAT-----QRSVRIYDLSKQELVKKLLTGS---KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE--  650 (733)
T ss_pred             EEEEe-----ccceEEEehhHHHHHHHHhcCC---eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh--
Confidence            99887     4569999999988887776655   68999999999999999999999999999754 4556666554  


Q ss_pred             CCCceEEEecCCCEEEEEECCCeEEEEEcC------CC---ceeeeccccccc----ceeeeecCCCceeeeeccCCceE
Q 001352          624 PENPRICFNKNGTLLAVIANENRIKILETP------ES---NSVDAAGVLSDN----LRKLSVNPISTVTGAGIANGSVS  690 (1093)
Q Consensus       624 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~------~~---~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~  690 (1093)
                      ..+++|+|++.-.++++|+.||++.|+...      .+   -++..+++|...    |....|+                
T Consensus       651 ~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH----------------  714 (733)
T KOG0650|consen  651 KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH----------------  714 (733)
T ss_pred             hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc----------------
Confidence            458999999999999999999999998533      11   234566666554    4444454                


Q ss_pred             ecCCCCCCCccceeecccccceec
Q 001352          691 VNEDPKEDVKPEISVEAENKSEVE  714 (1093)
Q Consensus       691 ~~~~~s~d~~~l~s~~~d~~i~~w  714 (1093)
                            |...++++++.||+|++|
T Consensus       715 ------P~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  715 ------PRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ------CCCceEEecCCCceEEee
Confidence                  778889999999999998

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=5e-20  Score=194.64  Aligned_cols=274  Identities=14%  Similarity=0.148  Sum_probs=204.4

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  416 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~  416 (1093)
                      .|..++|-|||..|+..+  +..+.|||++.|..+..                   +++|.+-|.|++||.||+++|+|+
T Consensus        14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~   72 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS   72 (1081)
T ss_pred             chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence            799999999999766554  36899999999998876                   889999999999999999999999


Q ss_pred             cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecc
Q 001352          417 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  496 (1093)
Q Consensus       417 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~  496 (1093)
                      .|..|.+|.-.-...++     ..|.+.|.|+.|+|-..  .|+|++-. ..-+|..+.....    .|...++.++.++
T Consensus        73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~----K~kss~R~~~CsW  140 (1081)
T KOG1538|consen   73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS----KHKSSSRIICCSW  140 (1081)
T ss_pred             CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH----hhhhheeEEEeee
Confidence            99999999976543332     26999999999999988  68888744 4778986554433    2443444444444


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEEEccCCC-----EEEEEecCCCCceeEEEEeCCCCee
Q 001352          497 KENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGR-----RLFSCGTSKEGESFLVEWNESEGAI  568 (1093)
Q Consensus       497 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~d~~-----~l~~~~~~~~~~~~i~iwd~~~~~~  568 (1093)
                      ..||++++.|-.+|+|.+-+-. +++...+.   +...+|.+++|+|...     .+++...    ..++..+.+ +|+.
T Consensus       141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~L-sG~~  214 (1081)
T KOG1538|consen  141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQL-SGKQ  214 (1081)
T ss_pred             cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEe-ccee
Confidence            7899999999999999987543 33333333   3556899999999642     3333322    223444443 3444


Q ss_pred             eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352          569 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  648 (1093)
Q Consensus       569 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  648 (1093)
                      +..-....   ....|+.+.++|.+++.|+.|+.+.+|-. .|-.+.++...  ...|..++..|+++.+++|+.||+|.
T Consensus       215 Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiA  288 (1081)
T KOG1538|consen  215 IGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIA  288 (1081)
T ss_pred             ecccccCC---CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeee
Confidence            43222222   45678899999999999999999999964 45555555432  34699999999999999999999999


Q ss_pred             EEEcCCC
Q 001352          649 ILETPES  655 (1093)
Q Consensus       649 iw~~~~~  655 (1093)
                      .|++...
T Consensus       289 CyNl~fS  295 (1081)
T KOG1538|consen  289 CYNLIFS  295 (1081)
T ss_pred             hhhhHHh
Confidence            9987643

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=2.8e-21  Score=196.42  Aligned_cols=302  Identities=18%  Similarity=0.205  Sum_probs=227.0

Q ss_pred             HhhccCCCCceeeeecCCCc-eEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          329 QTLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      ....-|.+.|++++|+|... .++|+|...|+|-+||+.+.+......               ..+..|.++|.++.|+|
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P  244 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSP  244 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecC
Confidence            34456888999999999876 789999999999999997544333211               22778999999999999


Q ss_pred             -CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce-eEEeecC
Q 001352          408 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGH  485 (1093)
Q Consensus       408 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~h  485 (1093)
                       +-..+++.|.||+|++-|++++.. .....+......+..+.|+.+..  .++.+..=|...+||.+++.. ...+.-|
T Consensus       245 ~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh  321 (498)
T KOG4328|consen  245 ANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLH  321 (498)
T ss_pred             CChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhh
Confidence             456888999999999999997642 22223333455678889998887  677888788999999998765 5566779


Q ss_pred             CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce----EEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001352          486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  561 (1093)
Q Consensus       486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw  561 (1093)
                      ...|++++++|... .++++++.|++.+|||++.....    .....|...|.+..|||.+-.|++.+.    +..|++|
T Consensus       322 ~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~  396 (498)
T KOG4328|consen  322 KKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVF  396 (498)
T ss_pred             hcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEe
Confidence            99999999998754 79999999999999999865433    344567889999999999888888776    6779999


Q ss_pred             eCC----CCeeeeeeecccccCC--CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCc-eEEEecC
Q 001352          562 NES----EGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKN  634 (1093)
Q Consensus       562 d~~----~~~~~~~~~~~~~~~~--~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~  634 (1093)
                      |..    .-....++.....+..  ......|.|+.+++++|-.-..|-|+|-..++.+..+...... .|. -..|+|-
T Consensus       397 dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~  475 (498)
T KOG4328|consen  397 DSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPM  475 (498)
T ss_pred             ecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccc
Confidence            983    2233333322111111  2345689999999999999999999999999988776544332 233 3579997


Q ss_pred             CC-EEEEEECCCeEEEEEcCC
Q 001352          635 GT-LLAVIANENRIKILETPE  654 (1093)
Q Consensus       635 ~~-~l~~~~~dg~i~iw~~~~  654 (1093)
                      +. +++.++..|.|+||..+.
T Consensus       476 ~~~~~aG~~s~Gki~vft~k~  496 (498)
T KOG4328|consen  476 RDTLAAGGNSSGKIYVFTNKK  496 (498)
T ss_pred             ccceeccCCccceEEEEecCC
Confidence            77 455555678899887553

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=8.9e-23  Score=218.31  Aligned_cols=236  Identities=17%  Similarity=0.286  Sum_probs=212.5

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      ...|...|.|+..-..++.+++|+.|..+-+|.+.....+.   .+.+|..+|.++.|+++..  +|++|+.+|+|++||
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD   98 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence            34588899999987788999999999999999987655444   6889999999999999988  899999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      ++.++.++++.+|...+.++.|+|.  +.+.++|+.|+.+++||.+..++...+..|...+..+.|+|+|++++.++.  
T Consensus        99 leeAk~vrtLtgh~~~~~sv~f~P~--~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e--  174 (825)
T KOG0267|consen   99 LEEAKIVRTLTGHLLNITSVDFHPY--GEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE--  174 (825)
T ss_pred             hhhhhhhhhhhccccCcceeeeccc--eEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence            9999999999999999999999664  578999999999999999999999999999999999999999999999875  


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  632 (1093)
                        +..+.+||...|+....|.+|.   +.+.++.|+|..-.+..|+.|+++++||+++.+.+......  ...|.+.+|+
T Consensus       175 --d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn  247 (825)
T KOG0267|consen  175 --DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFN  247 (825)
T ss_pred             --cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeec
Confidence              6789999999999999999988   89999999999888888999999999999998888776544  4569999999


Q ss_pred             cCCCEEEEEECC
Q 001352          633 KNGTLLAVIANE  644 (1093)
Q Consensus       633 ~~~~~l~~~~~d  644 (1093)
                      |++..+++|...
T Consensus       248 ~~~~~~~~G~q~  259 (825)
T KOG0267|consen  248 PDGKIVLSGEQI  259 (825)
T ss_pred             CCceeeecCchh
Confidence            999998888664

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=4.8e-21  Score=200.56  Aligned_cols=323  Identities=13%  Similarity=0.170  Sum_probs=237.8

Q ss_pred             eeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEE
Q 001352          391 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  470 (1093)
Q Consensus       391 ~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  470 (1093)
                      .++.||++.|.++...|.|.+||+|+.||+|+||.+.+|.+++..    ...+.|.|++|+|.+...+|+.+- ...+.|
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----~~d~~I~~vaw~P~~~~~vLAvA~-~~~~~i  468 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----QFDSEIRSVAWNPLSDLCVLAVAV-GECVLI  468 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE----eecceeEEEEecCCCCceeEEEEe-cCceEE
Confidence            348899999999999999999999999999999999999988754    234579999999998864455444 444666


Q ss_pred             EECCCCceeEEeecCCCCeEEeeecccCCccEEEEE----ecCCeEEEEEcCCCC----ceEEecCCCCceEEEEEccCC
Q 001352          471 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----SVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG  542 (1093)
Q Consensus       471 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~d~  542 (1093)
                      -+..=|..+..-..               ...|+++    ..++.+..|.-....    .+.....+...|..+.|+.+|
T Consensus       469 vnp~~G~~~e~~~t---------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG  533 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPT---------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG  533 (733)
T ss_pred             eCccccchhhhcch---------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence            66554532211100               0111111    234566778554222    233555677899999999999


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC
Q 001352          543 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG  622 (1093)
Q Consensus       543 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  622 (1093)
                      .||++...++ +...|.|..+..+.....|....   +.+.++.|+|...++++++. ..|+|||+....++..+...  
T Consensus       534 DYlatV~~~~-~~~~VliHQLSK~~sQ~PF~ksk---G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg--  606 (733)
T KOG0650|consen  534 DYLATVMPDS-GNKSVLIHQLSKRKSQSPFRKSK---GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG--  606 (733)
T ss_pred             ceEEEeccCC-CcceEEEEecccccccCchhhcC---CceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--
Confidence            9999887644 36678899988776665554444   78999999999999998875 56999999987777665433  


Q ss_pred             CCCCceEEEecCCCEEEEEECCCeEEEEEcCCC-ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCcc
Q 001352          623 LPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP  701 (1093)
Q Consensus       623 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  701 (1093)
                      ...|..++.+|.|..|++++.|+.+..+|+.-. +..+.++-|...+++++|+                      +.-.+
T Consensus       607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H----------------------~ryPL  664 (733)
T KOG0650|consen  607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFH----------------------KRYPL  664 (733)
T ss_pred             CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhc----------------------cccce
Confidence            346889999999999999999999999999854 6788899999999999987                      44556


Q ss_pred             ceeecccccceecceeeccCccccccccCc---ccccc----ceEEEEeecCCceEEEeeccceeEEe
Q 001352          702 EISVEAENKSEVEKPLFARPSECQSLLLPS---KVKAN----KISRLTYNNGGQAIFALASNGVHLMW  762 (1093)
Q Consensus       702 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~---~~~~~----~i~~l~~s~~g~~l~~~~~dg~v~vw  762 (1093)
                      +++++.||++.++.-..........+..|.   .+|..    .|..+.|+|...+|++++.||++++|
T Consensus       665 fas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  665 FASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            778888888887763322222111111111   23433    38888999999999999999999998

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.87  E-value=3.3e-20  Score=177.53  Aligned_cols=305  Identities=14%  Similarity=0.160  Sum_probs=216.9

Q ss_pred             cccceEEEEeec-CCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc
Q 001352          734 KANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  812 (1093)
Q Consensus       734 ~~~~i~~l~~s~-~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  812 (1093)
                      |.+.|+++.+.+ .|+++++++.||.+.+||++............          ...|+... ....+|...|..+.|-
T Consensus        42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~----------k~~c~v~~-~h~~~Hky~iss~~Wy  110 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA----------KHKCIVAK-QHENGHKYAISSAIWY  110 (397)
T ss_pred             CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee----------heeeeccc-cCCccceeeeeeeEEe
Confidence            778899998876 58999999999999999998654211111100          01111111 1122588899999988


Q ss_pred             cCC-CEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCC--CCEEEEEeCCCeEEEEEcCCcceeeecccccC
Q 001352          813 KND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD--NNVIAIGMDDSTILIYNARSSEVISKLEGHSK  888 (1093)
Q Consensus       813 ~dg-~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d--~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~  888 (1093)
                      |-. ..+.+++ |.+++|||..+.+....|+ -++.|.+-++||-.  -.++|+|..|-.|++-|+.+|.....+.||.+
T Consensus       111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~  189 (397)
T KOG4283|consen  111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD  189 (397)
T ss_pred             eecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence            844 4444444 8999999999998888876 55677777777721  24888999999999999999999999999999


Q ss_pred             CeEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCce--ee-----eeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCe
Q 001352          889 RVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGI--QT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH  959 (1093)
Q Consensus       889 ~V~~l~~s~dg~~-l~s~s~dg~i~iwd~~~~~~--~~-----~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~  959 (1093)
                      .|.++.|||...+ |++|+.||.|++||+.....  ..     .+..+.........+.+..++|+.||.++++ +.|..
T Consensus       190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r  269 (397)
T KOG4283|consen  190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR  269 (397)
T ss_pred             ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence            9999999998766 78999999999999975310  00     0011111112223357999999999999998 89999


Q ss_pred             EEEEEcCCcceeeeeecC--C---CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccce
Q 001352          960 LAIYEAEELTCLKQWFPI--S---SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1034 (1093)
Q Consensus       960 i~vwd~~~~~~~~~~~~~--h---~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1034 (1093)
                      +++|+..+|+.-..-+..  |   .+.-..+. +.+...++---.++.+.++++-.|+.++++..        |..  ..
T Consensus       270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~--------h~k--~i  338 (397)
T KOG4283|consen  270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST--------HLK--RI  338 (397)
T ss_pred             eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec--------ccc--ee
Confidence            999999988643321111  1   11111233 44555555555678899999999999888872        222  23


Q ss_pred             eEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352         1035 HAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus      1035 ~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
                      .|.+|-| +=+...+|..|+.+..|-+.
T Consensus       339 ~c~~~~~-~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  339 NCAAYRP-DFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             eEEeecC-chhhhhccccCCcccccccc
Confidence            4667777 45779999999999999873

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=8.4e-21  Score=205.14  Aligned_cols=242  Identities=17%  Similarity=0.240  Sum_probs=195.6

Q ss_pred             EEEeec-CCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCC-CE
Q 001352          740 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-AY  817 (1093)
Q Consensus       740 ~l~~s~-~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~  817 (1093)
                      .+.|.. +.++|++++.+|.|.+||+.....                   ...+..  +.  +|...+.++.|++-. .+
T Consensus        92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-------------------nk~l~~--f~--EH~Rs~~~ldfh~tep~i  148 (839)
T KOG0269|consen   92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIR-------------------NKLLTV--FN--EHERSANKLDFHSTEPNI  148 (839)
T ss_pred             hcccccchhhhheeecCCCcEEEEecCcccc-------------------chhhhH--hh--hhccceeeeeeccCCccE
Confidence            344442 456788888899999999875210                   000111  11  399999999999865 56


Q ss_pred             EEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-ceeeecccccCCeEEEEE
Q 001352          818 LFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVF  895 (1093)
Q Consensus       818 la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~-~~~~~l~~h~~~V~~l~~  895 (1093)
                      |++|+ ||+|++||+...+...++.+....|+.+.|+|..+..++++.+.|.+++||++.. ++..++.+|.++|.|+.|
T Consensus       149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw  228 (839)
T KOG0269|consen  149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW  228 (839)
T ss_pred             EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence            67777 8999999999999999999888899999999988899999999999999999864 567889999999999999


Q ss_pred             eCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE----EeCCeEEEEEcCCccee
Q 001352          896 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTCL  971 (1093)
Q Consensus       896 s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~----~~d~~i~vwd~~~~~~~  971 (1093)
                      +|++.+|||||.|++|+|||..+.+......+.+.       .++..+.|-|+..+.++    +.|..|+|||+...-..
T Consensus       229 hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP  301 (839)
T KOG0269|consen  229 HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP  301 (839)
T ss_pred             cCCCceeeecCCCccEEEEeccCCCccceeEEeec-------ceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence            99999999999999999999998765554444443       26899999999887554    36788999999988777


Q ss_pred             eeeecCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCC
Q 001352          972 KQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus       972 ~~~~~~h~~~v~~~~fs~-dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
                      ...+..|...++.++|-. |-..|.+++.||+|..-.++++
T Consensus       302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  302 YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             ceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            777888999999999965 5667889999998876655544

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=7.7e-20  Score=183.47  Aligned_cols=306  Identities=15%  Similarity=0.168  Sum_probs=217.7

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  412 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l  412 (1093)
                      .|+ +|..+.|.++....+|||+.|..|+||.++.+..-..-          ....-...+..|...|+++.|+|+|..|
T Consensus        12 ~~~-pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~gelL   80 (434)
T KOG1009|consen   12 DHE-PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDGELL   80 (434)
T ss_pred             CCC-ceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCcCee
Confidence            455 99999999988746999999999999999765433210          0000112388999999999999999999


Q ss_pred             EEEEcCCEEEEEEcc--------C-----CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352          413 GVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  479 (1093)
Q Consensus       413 as~~~d~~i~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  479 (1093)
                      |+|+++|.|.+|...        +     .+.......+.+|...|..++|+||+.  ++++++.|.++++||+..|..+
T Consensus        81 ASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~  158 (434)
T KOG1009|consen   81 ASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLL  158 (434)
T ss_pred             eecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeE
Confidence            999999999999877        3     122223446789999999999999999  8999999999999999999999


Q ss_pred             EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-------------------CCC----CceEEE
Q 001352          480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------------APG----LGCTRM  536 (1093)
Q Consensus       480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------------~~~----~~v~~~  536 (1093)
                      ..+..|...|..++|.|.  ++++++-+.|...+.+.+..........                   .|.    .-...+
T Consensus       159 ~~~~dh~~yvqgvawDpl--~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl  236 (434)
T KOG1009|consen  159 AILDDHEHYVQGVAWDPL--NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL  236 (434)
T ss_pred             eeccccccccceeecchh--hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence            999999999999999664  4788888888876666654433222111                   001    124568


Q ss_pred             EEccCCCEEEEEecCCC-----CceeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCC-----------------CCE
Q 001352          537 AYSANGRRLFSCGTSKE-----GESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTA-----------------KDQ  593 (1093)
Q Consensus       537 ~~s~d~~~l~~~~~~~~-----~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~-----------------~~~  593 (1093)
                      +|+|||..+++....-+     ..+..++++-.. .++...+.+..   .+...+.|+|-                 -+.
T Consensus       237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lpyrl  313 (434)
T KOG1009|consen  237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLPYRL  313 (434)
T ss_pred             ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEeccccccccccccccce
Confidence            89999999987543111     022344454321 12233333332   44555555441                 122


Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCce
Q 001352          594 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS  657 (1093)
Q Consensus       594 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~  657 (1093)
                      +++......|+|||.++-.++.....- +...++.++|++||..+++.+.||...+...+..+.
T Consensus       314 vfaiAt~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  314 VFAIATKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             EEEEeecceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence            333334567999999998887766432 245689999999999999999999988877765533

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.2e-21  Score=209.84  Aligned_cols=239  Identities=11%  Similarity=0.205  Sum_probs=212.9

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      +.+..|...|.|+..-..++ ++++|+.|..+-+|.+..-..+..                   +.+|+.+|.++.|+++
T Consensus        22 ~~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~   81 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTS   81 (825)
T ss_pred             hhhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcc
Confidence            44556888899998866676 799999999999999876544432                   7789999999999999


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  488 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  488 (1093)
                      ..+|++|+.+|+|++||++.++.++   ++.+|...+.++.|+|-+.  +.++|+.|+.+++||++...|.+.+.+|...
T Consensus        82 E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v  156 (825)
T KOG0267|consen   82 ERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRV  156 (825)
T ss_pred             hhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcce
Confidence            9999999999999999999988777   7889999999999999999  7899999999999999999999999999999


Q ss_pred             eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001352          489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  568 (1093)
Q Consensus       489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~  568 (1093)
                      |..+.|  .++|.++++++.|..+++||+..++....+..|...+..+.|+|..-+++.|+.    +..+++||+++.+.
T Consensus       157 v~~l~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~  230 (825)
T KOG0267|consen  157 VDVLRL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEV  230 (825)
T ss_pred             eEEEee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEE
Confidence            999999  557899999999999999999999999999999999999999999988988876    77899999999888


Q ss_pred             eeeeecccccCCCeEEEEEcCCCCEEEEEeCCC
Q 001352          569 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH  601 (1093)
Q Consensus       569 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg  601 (1093)
                      +.......   ..|.+..|+|++..+++|....
T Consensus       231 I~s~~~~~---~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  231 ISSGKPET---DGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eeccCCcc---CCceeeeecCCceeeecCchhh
Confidence            87776655   7899999999998888876543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=5.3e-20  Score=194.63  Aligned_cols=288  Identities=17%  Similarity=0.211  Sum_probs=206.0

Q ss_pred             CCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEE
Q 001352          345 PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY  424 (1093)
Q Consensus       345 pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iw  424 (1093)
                      |+.+.+||.+..||.|.++|.....-.         ++.+.  |  .....|.+.|..++|-|....|++++.|.++++|
T Consensus        61 ~n~eHiLavadE~G~i~l~dt~~~~fr---------~ee~~--l--k~~~aH~nAifDl~wapge~~lVsasGDsT~r~W  127 (720)
T KOG0321|consen   61 PNKEHILAVADEDGGIILFDTKSIVFR---------LEERQ--L--KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW  127 (720)
T ss_pred             CCccceEEEecCCCceeeecchhhhcc---------hhhhh--h--cccccccceeEeeccCCCceeEEEccCCceeeee
Confidence            344568999999999999998764322         00110  1  1144699999999999977889999999999999


Q ss_pred             EccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc--------------------e------
Q 001352          425 AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--------------------R------  478 (1093)
Q Consensus       425 d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--------------------~------  478 (1093)
                      |++++++.... .+.||.+.|.+++|.+++.. .+++|+.||.|.|||+.-..                    .      
T Consensus       128 dvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k  205 (720)
T KOG0321|consen  128 DVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK  205 (720)
T ss_pred             eeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence            99998876643 46799999999999999886 89999999999999985221                    0      


Q ss_pred             -eEEeecCCCCeEE---eeecccCCccEEEEEec-CCeEEEEEcCCCCceEE--------ecCC---CCceEEEEEccCC
Q 001352          479 -TYSFEGHGAPVYS---LCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVD--------YDAP---GLGCTRMAYSANG  542 (1093)
Q Consensus       479 -~~~~~~h~~~v~~---~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~--------~~~~---~~~v~~~~~s~d~  542 (1093)
                       +.....+...|.+   +.+  ..|...|++++. |+.|+|||++.......        +..+   ...+.++.....|
T Consensus       206 r~~k~kA~s~ti~ssvTvv~--fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG  283 (720)
T KOG0321|consen  206 RIRKWKAASNTIFSSVTVVL--FKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG  283 (720)
T ss_pred             cccccccccCceeeeeEEEE--EeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence             1111234444443   222  235568888887 99999999987554332        2222   2357788888888


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCC--eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 001352          543 RRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  620 (1093)
Q Consensus       543 ~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  620 (1093)
                      .+|++...    |+.|+.||+.+-  .++..+.++......+ .-..+|++.++++|+.|...++|.+.+.+.-..+- .
T Consensus       284 t~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l-~  357 (720)
T KOG0321|consen  284 TYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL-L  357 (720)
T ss_pred             CeEEEEec----CCcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCcceeeeeecCccCChhhh-h
Confidence            88877665    667999998754  3344455544111222 23578999999999999999999998765433322 1


Q ss_pred             CCCCCCceEEEec-CCCEEEEEECCCeEEEEEcCCC
Q 001352          621 GGLPENPRICFNK-NGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       621 ~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      ++...|.+++|.| .-.-++++++|..+++|++..+
T Consensus       358 Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  358 GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            3345689999987 3344666799999999999654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=2.4e-20  Score=201.72  Aligned_cols=285  Identities=16%  Similarity=0.265  Sum_probs=218.1

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccc-eEEeccc---cccEEEEEeeCCCCcEEEEEEcCCCcEEEEEC
Q 001352          398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAH---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  473 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~h---~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~  473 (1093)
                      ....+|+.+++-..|+.++.. .++||.+........ ....++.   ...+..+.|..-..+ +|+|++..|.|.+||+
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N-lIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN-LIATCSTNGVISVWDL  117 (839)
T ss_pred             cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh-hheeecCCCcEEEEec
Confidence            456778888998888888655 478887765432111 1111111   124566788755444 8999999999999999


Q ss_pred             CC---CceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC-CCEEEEEe
Q 001352          474 VT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN-GRRLFSCG  549 (1093)
Q Consensus       474 ~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~  549 (1093)
                      ..   .+.+..|..|...++++.|++... .+|++|+.||+|++||++......++......|+.+.|+|. +..++++.
T Consensus       118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~  196 (839)
T KOG0269|consen  118 NKSIRNKLLTVFNEHERSANKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH  196 (839)
T ss_pred             CccccchhhhHhhhhccceeeeeeccCCc-cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence            87   567778899999999999987644 69999999999999999999999988888889999999994 56666665


Q ss_pred             cCCCCceeEEEEeCCCC-eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352          550 TSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  628 (1093)
Q Consensus       550 ~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  628 (1093)
                      .    .|.+++||++.. ++...+..|.   ++|.++.|+|++.+|++||.|+.|+|||..+++.......+. ..++..
T Consensus       197 d----sG~lqlWDlRqp~r~~~k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~r  268 (839)
T KOG0269|consen  197 D----SGYLQLWDLRQPDRCEKKLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGR  268 (839)
T ss_pred             C----CceEEEeeccCchhHHHHhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeee
Confidence            4    678999999864 4556677777   999999999999999999999999999998765543333322 356899


Q ss_pred             EEEecCCCE-EEEEE--CCCeEEEEEcCCC-ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCcccee
Q 001352          629 ICFNKNGTL-LAVIA--NENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  704 (1093)
Q Consensus       629 v~~s~~~~~-l~~~~--~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  704 (1093)
                      |.|-|+.++ |++++  .|..|+|||+... -+...+..|...++.++|.                     +.|...+.+
T Consensus       269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~---------------------~~d~~~l~s  327 (839)
T KOG0269|consen  269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD---------------------SGDRINLWS  327 (839)
T ss_pred             eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc---------------------CCCceeeEe
Confidence            999997654 55554  3789999999865 4556777888888888887                     345566778


Q ss_pred             ecccccceec
Q 001352          705 VEAENKSEVE  714 (1093)
Q Consensus       705 ~~~d~~i~~w  714 (1093)
                      ++.|+++..-
T Consensus       328 ~sKD~tv~qh  337 (839)
T KOG0269|consen  328 CSKDGTVLQH  337 (839)
T ss_pred             ecCccHHHHh
Confidence            8888876543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=3.2e-19  Score=172.42  Aligned_cols=268  Identities=13%  Similarity=0.203  Sum_probs=195.6

Q ss_pred             ccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC--CC
Q 001352          332 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG  409 (1093)
Q Consensus       332 ~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--dg  409 (1093)
                      .+|.+-|.|+.|.+-|++ +|+|+.|++|+|||.+...-....+               .-.+.|.+.|..|.|.+  -|
T Consensus        10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~T---------------s~Wrah~~Si~rV~WAhPEfG   73 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCT---------------SSWRAHDGSIWRVVWAHPEFG   73 (361)
T ss_pred             cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEEe---------------eeEEecCCcEEEEEecCcccc
Confidence            379999999999999997 8999999999999975443222111               11556999999999976  49


Q ss_pred             CEEEEEEcCCEEEEEEccC------CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc------
Q 001352          410 SLLGVAYSKHIVQLYAYHG------GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS------  477 (1093)
Q Consensus       410 ~~las~~~d~~i~iwd~~~------~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~------  477 (1093)
                      +.+|+++.|+++.||.-..      +..-....++......|+++.|.|....+.+++++.||.+|||+....-      
T Consensus        74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~  153 (361)
T KOG2445|consen   74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT  153 (361)
T ss_pred             ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence            9999999999999998631      1112223356667789999999999877799999999999999865432      


Q ss_pred             eeEEee-------cCCCCeEEeeecccCC-ccEEEEEecC-----CeEEEEEcCCCCce----EEecCCCCceEEEEEcc
Q 001352          478 RTYSFE-------GHGAPVYSLCPHAKEN-IHFIFSISVD-----GKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSA  540 (1093)
Q Consensus       478 ~~~~~~-------~h~~~v~~~~~~~~~~-~~~l~s~~~d-----g~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~  540 (1093)
                      ..+.++       .+..+..|+.|+++.- ..+|+.|+.+     +.++||........    ..+..+..+|+.++|.|
T Consensus       154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP  233 (361)
T KOG2445|consen  154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP  233 (361)
T ss_pred             hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence            223333       3666778888876533 2467777665     47899987765532    35678888999999999


Q ss_pred             CC----CEEEEEecCCCCceeEEEEeCCCCe-----------------eeeeeecccccCCCeEEEEEcCCCCEEEEEeC
Q 001352          541 NG----RRLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD  599 (1093)
Q Consensus       541 d~----~~l~~~~~~~~~~~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  599 (1093)
                      +-    ..|++++.    +| |+||++....                 .+..+..+..|.+.|..+.|+-.|..|.+.|.
T Consensus       234 n~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd  308 (361)
T KOG2445|consen  234 NIGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD  308 (361)
T ss_pred             ccCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence            62    35666654    44 9999887311                 12233333444599999999999999999999


Q ss_pred             CCcEEEEECCC---CceEEEEecC
Q 001352          600 DHVIKIWDMNK---VQLLTTIDAG  620 (1093)
Q Consensus       600 dg~i~iwd~~~---~~~~~~~~~~  620 (1093)
                      ||.|++|...-   .++...+...
T Consensus       309 DG~VRLWkany~n~~kC~sv~~~e  332 (361)
T KOG2445|consen  309 DGCVRLWKANYNNLWKCTSVLKAE  332 (361)
T ss_pred             CceeeehhhhhhhhheeeeEEecc
Confidence            99999997643   3345555544

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=4.2e-19  Score=171.58  Aligned_cols=256  Identities=13%  Similarity=0.176  Sum_probs=190.5

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCC-cccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK  469 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~  469 (1093)
                      ..+|.+-|.++.|.+-|+++|+|+.|++|+|||.+.+. ........+.|.+.|..+.|.+-  |+  .+++++.|+++.
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~   86 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS   86 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence            45799999999999999999999999999999965433 23444467889999999999654  56  899999999999


Q ss_pred             EEECCC------C---ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE------Eec-------
Q 001352          470 VWDAVT------G---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DYD-------  527 (1093)
Q Consensus       470 vwd~~~------~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~-------  527 (1093)
                      ||.-..      |   ....++......|+.++|.|..-|-.+++++.||.+|||+.-......      .+.       
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            997411      1   123456677889999999999999999999999999999765432221      111       


Q ss_pred             CCCCceEEEEEccC---CCEEEEEecC-CCCceeEEEEeCCCC----eeeeeeecccccCCCeEEEEEcCCC----CEEE
Q 001352          528 APGLGCTRMAYSAN---GRRLFSCGTS-KEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTAK----DQIL  595 (1093)
Q Consensus       528 ~~~~~v~~~~~s~d---~~~l~~~~~~-~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~v~~~~~~----~~l~  595 (1093)
                      .+..+..|+.|+|.   ..+|++++.+ ....+.++||....+    ..+..+.++.   .+|+.++|.|+-    ..|+
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence            23346788999874   4567777643 112235677765433    2344555555   999999999973    4678


Q ss_pred             EEeCCCcEEEEECCCCc-----------------eEEEEe-cCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352          596 AAGDDHVIKIWDMNKVQ-----------------LLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  654 (1093)
Q Consensus       596 ~~~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  654 (1093)
                      +++.|| |+||++....                 .+..+. ..++...|..+.|+-.|..|++.+.||.+++|...-
T Consensus       244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            899999 9999987311                 112221 334556799999999999999999999999998763

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=6.6e-20  Score=186.12  Aligned_cols=243  Identities=15%  Similarity=0.185  Sum_probs=188.6

Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEe------------------ccccccEEEEEeeCCCCcEEEEEEcCCCcEEE
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEI------------------DAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  470 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~------------------~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  470 (1093)
                      |.|+|.|+.|..|.|||+.--..+.+...+                  .+|+..|.+++|+..-+. +|++||.|.+|++
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~l  270 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVKL  270 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEEE
Confidence            689999999999999998643333222222                  279999999999988777 8999999999999


Q ss_pred             EECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001352          471 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  550 (1093)
Q Consensus       471 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~  550 (1093)
                      ||+.+|++..++..|...|.++.|++.. ..+|++|+.|++|.+.|.+........-...+.|-.++|.|.....+.++.
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t  349 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST  349 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence            9999999999999999999999999764 579999999999999999853332222223457888999998777666654


Q ss_pred             CCCCceeEEEEeCCCC-eeeeeeecccccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352          551 SKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  628 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  628 (1093)
                         .+|+|+-+|++.. +++.+++.|.   ++|.++++++... .+++++.|+.|++|++............-......|
T Consensus       350 ---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c  423 (463)
T KOG0270|consen  350 ---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHC  423 (463)
T ss_pred             ---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceee
Confidence               2788999999875 8888999888   8999999998754 566799999999999876544322221111223456


Q ss_pred             EEEecCC-CEEEEEECCCeEEEEEcCCCceee
Q 001352          629 ICFNKNG-TLLAVIANENRIKILETPESNSVD  659 (1093)
Q Consensus       629 v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~  659 (1093)
                      .++.|+- -.++.|+..+.+++||+.+...+.
T Consensus       424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  424 FALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             cccCCCcceEEEecCccceEEEeecccChhHH
Confidence            6777754 467778888889999998775543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=1.7e-19  Score=175.88  Aligned_cols=298  Identities=14%  Similarity=0.201  Sum_probs=206.3

Q ss_pred             cccceEEEEeec----CCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEE
Q 001352          734 KANKISRLTYNN----GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF  809 (1093)
Q Consensus       734 ~~~~i~~l~~s~----~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l  809 (1093)
                      |...|..++|.+    +...+++......+.+|+.+...                    +.++....... .+......+
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~D~-d~~Esfytc   95 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYADE-DHDESFYTC   95 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeeccCC-CCCcceEEE
Confidence            666788888873    33445555556688888876431                    11122221111 366667777


Q ss_pred             EEccCC----CEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec-
Q 001352          810 ALSKND----AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-  883 (1093)
Q Consensus       810 ~~s~dg----~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l-  883 (1093)
                      +++-|-    -++|+++ -|.|+|.|..+++....+.+|...|..+.+.|.+.++|++++.|.+|++|++++..++..+ 
T Consensus        96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG  175 (385)
T KOG1034|consen   96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG  175 (385)
T ss_pred             EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence            777543    3566666 5999999999999999999999999999999977889999999999999999999998776 


Q ss_pred             --ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeee-------------eeecCCCccc-------CCCCce
Q 001352          884 --EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR-------------SLQTPDGVMT-------LAPSET  941 (1093)
Q Consensus       884 --~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~-------------~~~~~~~~~~-------~~~~v~  941 (1093)
                        .||.+.|.++.|+++|.+++|+|.|.+|++|++...+.....             .+..+..+..       +...|.
T Consensus       176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD  255 (385)
T KOG1034|consen  176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD  255 (385)
T ss_pred             ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence              569999999999999999999999999999999854322100             0111111110       011223


Q ss_pred             EEEEccCCCEEEE-EeCCeEEEEEc-CCcceeeee------------ecCCCCCEEEEEEc--cCCCEEEEEeCCCcEEE
Q 001352          942 HIQFHKDQTRFLL-VHETHLAIYEA-EELTCLKQW------------FPISSVPISQATFS--CDCRMVFTSFVDGTLSI 1005 (1093)
Q Consensus       942 ~~~~s~dg~~l~~-~~d~~i~vwd~-~~~~~~~~~------------~~~h~~~v~~~~fs--~dg~~l~t~~~dg~v~v 1005 (1093)
                      ++.|-  |.++++ +.++.|..|.. +-++.+...            +.-....|+-+.|+  |-+++||.|...|.|.+
T Consensus       256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v  333 (385)
T KOG1034|consen  256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV  333 (385)
T ss_pred             HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence            33322  477777 78889999987 222221111            11125566666665  45789999999999999


Q ss_pred             EEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352         1006 HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus      1006 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
                      ||++..+....    ..+....++..|+  ..+|+. |+..|+..++|++|.-||.
T Consensus       334 wdL~~~ep~~~----ttl~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  334 WDLDNNEPPKC----TTLTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             EECCCCCCccC----ceEEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEe
Confidence            99998876411    1111122344455  456776 6899999999999999986

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=4.3e-19  Score=173.03  Aligned_cols=295  Identities=15%  Similarity=0.263  Sum_probs=213.2

Q ss_pred             HhhccCCCCceeeeecC----CCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352          329 QTLIEGSSSPMSMDFHP----VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  404 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~sp----dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  404 (1093)
                      +.+++|+.+|..++|.+    +...++|+.+. ..+.+|+....-.++              .++...-..|...-..++
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcs   96 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCS   96 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCcccee--------------eeeeccCCCCCcceEEEE
Confidence            34568888999999984    33335666544 678899886544221              122222335788888999


Q ss_pred             ECCC----CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE
Q 001352          405 WSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  480 (1093)
Q Consensus       405 ~s~d----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  480 (1093)
                      |+-|    .-+||+|+.-|.|+|.|+.++++..   .+.+|...|+.+.|.|+..+ ++++++.|.+|++|++++..++.
T Consensus        97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~  172 (385)
T KOG1034|consen   97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVA  172 (385)
T ss_pred             EEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEE
Confidence            9875    3489999999999999999987666   67799999999999999877 79999999999999999999998


Q ss_pred             Ee---ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE------e----------------------cCC
Q 001352          481 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD------Y----------------------DAP  529 (1093)
Q Consensus       481 ~~---~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~------~----------------------~~~  529 (1093)
                      .|   .+|.+.|.++.|+.  +|.+|++++.|.++++|++...+....      +                      ..|
T Consensus       173 VfGG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH  250 (385)
T KOG1034|consen  173 VFGGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH  250 (385)
T ss_pred             EecccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence            87   56999999999955  566999999999999999974321110      0                      111


Q ss_pred             CCceEEEEEccCCCEEEEEecCCCCceeEEEEeC-CCCee-------------eeeeecccccCCCeEEE--EEcCCCCE
Q 001352          530 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAI-------------KRTYQGLQLQHNSVSVV--HFDTAKDQ  593 (1093)
Q Consensus       530 ~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~-~~~~~-------------~~~~~~~~~~~~~v~~v--~~~~~~~~  593 (1093)
                      ...|.|+.|-  |+++++-+-    ++.|..|.. +-++.             +..+.-.   ...+.-+  +|.|-.+.
T Consensus       251 rnyVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~---~c~iWfirf~~d~~~~~  321 (385)
T KOG1034|consen  251 RNYVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP---MCDIWFIRFAFDPWQKM  321 (385)
T ss_pred             cchHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccC---ccceEEEEEeecHHHHH
Confidence            1222223222  456665543    557999987 22222             1122211   2344444  45566788


Q ss_pred             EEEEeCCCcEEEEECCCCce--EEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352          594 ILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  653 (1093)
Q Consensus       594 l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  653 (1093)
                      |+.|...|.|++||++....  ..++........|...+|+.||..|+..++|++|.-||..
T Consensus       322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            99999999999999987665  2344444444568999999999999999999999999864

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=3.7e-19  Score=188.32  Aligned_cols=287  Identities=17%  Similarity=0.157  Sum_probs=197.4

Q ss_pred             ceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeE
Q 001352          748 QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVI  826 (1093)
Q Consensus       748 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i  826 (1093)
                      ..|+.+..+|.|.+++......               .+.... +...    ..|...|..+.+.|....|++++ |.++
T Consensus        65 HiLavadE~G~i~l~dt~~~~f---------------r~ee~~-lk~~----~aH~nAifDl~wapge~~lVsasGDsT~  124 (720)
T KOG0321|consen   65 HILAVADEDGGIILFDTKSIVF---------------RLEERQ-LKKP----LAHKNAIFDLKWAPGESLLVSASGDSTI  124 (720)
T ss_pred             ceEEEecCCCceeeecchhhhc---------------chhhhh-hccc----ccccceeEeeccCCCceeEEEccCCcee
Confidence            4466667789999988654322               111100 1111    14999999999999667777776 7899


Q ss_pred             EEEEccCceeEEE--ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc--------------------------
Q 001352          827 SLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------------  878 (1093)
Q Consensus       827 ~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~--------------------------  878 (1093)
                      ++||+++.+++..  +.+|...+.+++|.|.+...+++|+.||.|.|||+.-..                          
T Consensus       125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~  204 (720)
T KOG0321|consen  125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK  204 (720)
T ss_pred             eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence            9999999988877  889999999999999888999999999999999985321                          


Q ss_pred             -eeeecccccCCeEE---EEEeCCCCEEEEEeC-CCcEEEEeCCCCceeeee-eeec--CCCcccCCCCceEEEEccCCC
Q 001352          879 -VISKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCR-SLQT--PDGVMTLAPSETHIQFHKDQT  950 (1093)
Q Consensus       879 -~~~~l~~h~~~V~~---l~~s~dg~~l~s~s~-dg~i~iwd~~~~~~~~~~-~~~~--~~~~~~~~~~v~~~~~s~dg~  950 (1093)
                       .+....+|...|.+   +.+..|...||++|. |+.|+|||+......... ....  ...+......++++.....|.
T Consensus       205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt  284 (720)
T KOG0321|consen  205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT  284 (720)
T ss_pred             ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence             01222345566666   666778899999998 999999999875422211 1111  111111123567777777788


Q ss_pred             EEEE-EeCCeEEEEEcCCcceee-eeecCC--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCC
Q 001352          951 RFLL-VHETHLAIYEAEELTCLK-QWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1026 (1093)
Q Consensus       951 ~l~~-~~d~~i~vwd~~~~~~~~-~~~~~h--~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 1026 (1093)
                      +|.+ +.|+.|++|++.+...-- ..+.++  ..--..-..|||+.+|++|+.|..+++|.+.+-+.--.+.    +.  
T Consensus       285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~G--  358 (720)
T KOG0321|consen  285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----LG--  358 (720)
T ss_pred             eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----hC--
Confidence            8887 799999999997643211 112233  1111223469999999999999999999998876542221    11  


Q ss_pred             CCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352         1027 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus      1027 ~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
                       |.-+|.  +++|.|.+-.-++|+++|.++++|++..
T Consensus       359 -ht~eVt--~V~w~pS~~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  359 -HTREVT--TVRWLPSATTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             -cceEEE--EEeeccccCCCceeeccCcceEEEeccC
Confidence             233344  4555554445688889999999999943

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=1.4e-16  Score=185.47  Aligned_cols=373  Identities=25%  Similarity=0.420  Sum_probs=277.2

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEecccc-ccEEEEEe-eCCCCcEEEEEEcCCCcEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAF-SAPCKQISVITCGDDKTIKV  470 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~-s~d~~~l~l~s~~~d~~i~v  470 (1093)
                      ...|...|.++.|.+++..++.++.|+.+.+|+...+.  .....+.++. ..+..+.+ ++++....+..+..|+.+.+
T Consensus        61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  138 (466)
T COG2319          61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE--KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL  138 (466)
T ss_pred             eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc--eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence            45689999999999999999999999999999999875  1222444533 36777777 77776323333455999999


Q ss_pred             EECCC-CceeEEeecCCCCeEEeeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001352          471 WDAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  548 (1093)
Q Consensus       471 wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~  548 (1093)
                      ||... ......+..|...|..+++++.  +..+++++. |+.+++|+.........+..+...+.+++|+|++..++.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  216 (466)
T COG2319         139 WDLSTPGKLIRTLEGHSESVTSLAFSPD--GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS  216 (466)
T ss_pred             EEecCCCeEEEEEecCcccEEEEEECCC--CCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEE
Confidence            99988 7888889999999999999654  457888875 9999999999878888888889999999999999844443


Q ss_pred             -ecCCCCceeEEEEeCCCCeeee-eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-EEEEecCCCCCC
Q 001352          549 -GTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL-LTTIDAGGGLPE  625 (1093)
Q Consensus       549 -~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~  625 (1093)
                       +.    ++.|++||...+.... .+.+|.   ... ...|+|++..+++++.|+.+++|+...... ...+.  .+...
T Consensus       217 ~~~----d~~i~~wd~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~  286 (466)
T COG2319         217 GSS----DGTIRLWDLSTGKLLRSTLSGHS---DSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS--GHSSS  286 (466)
T ss_pred             ecC----CCcEEEEECCCCcEEeeecCCCC---cce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe--cCCcc
Confidence             43    6678899988888777 577766   443 338999998889999999999999987665 44442  23456


Q ss_pred             CceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceee
Q 001352          626 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV  705 (1093)
Q Consensus       626 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~  705 (1093)
                      +.++.|+|++..+++++.|+.+.+|+...........                                           
T Consensus       287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------------------------------------------  323 (466)
T COG2319         287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-------------------------------------------  323 (466)
T ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-------------------------------------------
Confidence            8889999988888888888889999766442221110                                           


Q ss_pred             cccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccC
Q 001352          706 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ  785 (1093)
Q Consensus       706 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~  785 (1093)
                                               ..                                                     
T Consensus       324 -------------------------~~-----------------------------------------------------  325 (466)
T COG2319         324 -------------------------LK-----------------------------------------------------  325 (466)
T ss_pred             -------------------------ec-----------------------------------------------------
Confidence                                     00                                                     


Q ss_pred             CCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE--eCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEE-
Q 001352          786 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-  862 (1093)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las-  862 (1093)
                                     .|...+..+.+.+++..++.+  .++.+.+|+............. ..+..+.+++ + ..++. 
T Consensus       326 ---------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~  387 (466)
T COG2319         326 ---------------GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSS  387 (466)
T ss_pred             ---------------ccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C-CCEEEE
Confidence                           022234444442222333333  2466777777766522222222 2288899998 7 55554 


Q ss_pred             EeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352          863 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       863 g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~  918 (1093)
                      +..++.+.+|+............+...+....+++++..+++++.++.+++|+...
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         388 GSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             ecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            88999999999998887776665547799999999999999999999999999987

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=4.9e-19  Score=181.29  Aligned_cols=289  Identities=13%  Similarity=0.170  Sum_probs=219.1

Q ss_pred             CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC-EEEEEEcCCEEEEEEccCCCc-ccce
Q 001352          358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSD-ARQQ  435 (1093)
Q Consensus       358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~-~las~~~d~~i~iwd~~~~~~-~~~~  435 (1093)
                      ..++|||+...+..-.+.                 -....-.+.++.|+.... .+|+.+.|..|++|.-..... +...
T Consensus        12 d~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~   74 (673)
T KOG4378|consen   12 DKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRV   74 (673)
T ss_pred             CceEEeecccccCccccc-----------------cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCcccee
Confidence            579999997655443211                 111223489999998764 233446777899997654311 1111


Q ss_pred             EEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEE
Q 001352          436 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW  515 (1093)
Q Consensus       436 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vw  515 (1093)
                      ....+.  .-.|++......  ++++||..+.|+|||++...+.+.+++|...|+++.+..  ...+|++++..|.|.+.
T Consensus        75 ~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdiiih  148 (673)
T KOG4378|consen   75 RKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDIIIH  148 (673)
T ss_pred             eccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEEEE
Confidence            122222  334444444444  899999999999999998888889999999999999865  34799999999999999


Q ss_pred             EcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCE-
Q 001352          516 LYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ-  593 (1093)
Q Consensus       516 d~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-  593 (1093)
                      .+.++.....+.... ..+.-+.|+|..+.+++...+   +|.|.+||+....++..+..  .|..+...++|+|.... 
T Consensus       149 ~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicfspsne~l  223 (673)
T KOG4378|consen  149 GTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGICFSPSNEAL  223 (673)
T ss_pred             ecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCcceecCCccce
Confidence            999888777777664 456689999999887765542   77899999988877655543  23588999999998654 


Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC-ceeeecccccccceeee
Q 001352          594 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLS  672 (1093)
Q Consensus       594 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~  672 (1093)
                      |++.+.|..|.+||....+....+....   +...++|+++|.+|+.|...|.|..||++.. .++.....|...|++++
T Consensus       224 ~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va  300 (673)
T KOG4378|consen  224 LVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA  300 (673)
T ss_pred             EEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence            5668999999999999888777776543   4789999999999999999999999999855 67888899999999999


Q ss_pred             ecCCC
Q 001352          673 VNPIS  677 (1093)
Q Consensus       673 ~~~~~  677 (1093)
                      |.+..
T Consensus       301 fq~s~  305 (673)
T KOG4378|consen  301 FQPSP  305 (673)
T ss_pred             eeecc
Confidence            98765

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=7.5e-17  Score=187.64  Aligned_cols=371  Identities=23%  Similarity=0.347  Sum_probs=273.9

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCc-eeEEeeeeeeecccccceeeeeeecCCC-CCeEEEEE-
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-  405 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~-  405 (1093)
                      ..+.+|...+.++.|.+.+. .++.++.|+.+.+|+...+. ....                   +.++. ..+..+.+ 
T Consensus        59 ~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~  118 (466)
T COG2319          59 LLLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALS  118 (466)
T ss_pred             heeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEE
Confidence            35668999999999999998 47888899999999999886 3332                   22322 46777777 


Q ss_pred             CCCCC-EEEEEEc-CCEEEEEEccC-CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC-CCcEEEEECCCCceeEE
Q 001352          406 SPDGS-LLGVAYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYS  481 (1093)
Q Consensus       406 s~dg~-~las~~~-d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~  481 (1093)
                      ++++. +++..+. |+.+.+|+... ...   ...+..|...|..++|+|++.  .+++++. |+.+++|++.++..+..
T Consensus       119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  193 (466)
T COG2319         119 SPDGNSILLASSSLDGTVKLWDLSTPGKL---IRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLST  193 (466)
T ss_pred             CCCcceEEeccCCCCccEEEEEecCCCeE---EEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEe
Confidence            88888 5555444 89999999987 432   236778999999999999998  6777775 99999999999999999


Q ss_pred             eecCCCCeEEeeecccCCcc-EEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352          482 FEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  559 (1093)
Q Consensus       482 ~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~  559 (1093)
                      +.+|...|.++++.  +++. .+++++.|+.|++||........ .+..+.... ...|+|++..+++++.    ++.++
T Consensus       194 ~~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~  266 (466)
T COG2319         194 LAGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIR  266 (466)
T ss_pred             eccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEE
Confidence            99999999999997  4555 55556999999999888666666 566666664 3489999988886665    67799


Q ss_pred             EEeCCCCee-eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEE
Q 001352          560 EWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL  638 (1093)
Q Consensus       560 iwd~~~~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  638 (1093)
                      +|+...... ...+.+|.   ..+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.+.+++..+
T Consensus       267 ~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (466)
T COG2319         267 LWDLRSSSSLLRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL  343 (466)
T ss_pred             EeeecCCCcEEEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEE
Confidence            999987665 44444444   78999999998888988888899999999888777666511222247888884333556


Q ss_pred             EEE-ECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCcccee-ecccccceecce
Q 001352          639 AVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS-VEAENKSEVEKP  716 (1093)
Q Consensus       639 ~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s-~~~d~~i~~w~~  716 (1093)
                      +.+ ..|+.+.+|+............... +..+.+.                      ++ ..... +..++.+.+|+.
T Consensus       344 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------~~-~~~~~~~~~~~~~~~~~~  399 (466)
T COG2319         344 VSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS----------------------PD-GRVVSSGSTDGTVRLWDL  399 (466)
T ss_pred             EEeecCCCcEEeeecCCCceeEEecCCce-EEEEEEC----------------------CC-CCEEEEecCCCceEEEec
Confidence            665 6788999999987762222222111 4444444                      22 22333 677889999997


Q ss_pred             eeccCccccccccCccccc-cceEEEEeecCCceEEEeeccceeEEeeec
Q 001352          717 LFARPSECQSLLLPSKVKA-NKISRLTYNNGGQAIFALASNGVHLMWRWP  765 (1093)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~  765 (1093)
                      ..........       .. ..+....+++++..++.++.++.+++|+..
T Consensus       400 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (466)
T COG2319         400 STGSLLRNLD-------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK  442 (466)
T ss_pred             ccCeeeeecc-------CCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence            6433222111       11 678889999999999998889999998754

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=3.6e-20  Score=210.07  Aligned_cols=296  Identities=16%  Similarity=0.255  Sum_probs=226.6

Q ss_pred             ceeeeecCCCceEEEEEccC----------CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          338 PMSMDFHPVQHTLLLVGTNV----------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       338 V~~~~~spdg~~llasg~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      -..++|||++..++|+|...          .++.||.+.-.....              .++...-..-...-+.++|.+
T Consensus         9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~--------------dlk~~~s~~s~~rF~kL~W~~   74 (1049)
T KOG0307|consen    9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS--------------DLKPVGSLQSSNRFNKLAWGS   74 (1049)
T ss_pred             cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc--------------cccccccccccccceeeeecc
Confidence            34689999998678877543          334444432211110              000000111345677899999


Q ss_pred             CCCE----EEEEEcCCEEEEEEccC---CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE
Q 001352          408 DGSL----LGVAYSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  480 (1093)
Q Consensus       408 dg~~----las~~~d~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  480 (1093)
                      .|..    ||.|..||.|.+||...   +.....+.....|.+.|..+.|++.+.. +|++|+.||.|.|||+..-+.-.
T Consensus        75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~  153 (1049)
T KOG0307|consen   75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF  153 (1049)
T ss_pred             cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence            8776    88899999999999876   4444445567789999999999999876 79999999999999998866555


Q ss_pred             Eee--cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--ceEEEEEccCCCE-EEEEecCCCCc
Q 001352          481 SFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRR-LFSCGTSKEGE  555 (1093)
Q Consensus       481 ~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~s~d~~~-l~~~~~~~~~~  555 (1093)
                      +..  .....|.+++|+.. ..+.|++++.+|.+.|||++..+.+..+..+..  .+..++|+|+... +++++ +.+..
T Consensus       154 ~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As-~dd~~  231 (1049)
T KOG0307|consen  154 TPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVAS-GDDSA  231 (1049)
T ss_pred             CCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeec-CCCCC
Confidence            542  24577999999743 457899999999999999999988887766654  5788999998754 44444 45568


Q ss_pred             eeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec
Q 001352          556 SFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  633 (1093)
Q Consensus       556 ~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  633 (1093)
                      -.|.+||++. ...++++++|.   ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+  ..+..+.|+|
T Consensus       232 PviqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--nW~fdv~w~p  306 (1049)
T KOG0307|consen  232 PVIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG--NWCFDVQWCP  306 (1049)
T ss_pred             ceeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--cceeeeeecC
Confidence            8899999875 45677788888   899999999987 788889999999999999999999998643  4688999999


Q ss_pred             CCC-EEEEEECCCeEEEEEcCCC
Q 001352          634 NGT-LLAVIANENRIKILETPES  655 (1093)
Q Consensus       634 ~~~-~l~~~~~dg~i~iw~~~~~  655 (1093)
                      ... .+++++-||.|.|+.+.+.
T Consensus       307 r~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  307 RNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             CCcchhhhheeccceeeeeeecC
Confidence            554 8899999999999998865

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=8.2e-19  Score=179.64  Aligned_cols=293  Identities=16%  Similarity=0.202  Sum_probs=214.0

Q ss_pred             EEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEE--ECCCeEEEEEcCCCceeeecccccccceeee
Q 001352          595 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLS  672 (1093)
Q Consensus       595 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~  672 (1093)
                      ..++....+++||....+....+..+...+.+.++.|+.... |+++  +.|..+++|.-.....               
T Consensus         6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~---------------   69 (673)
T KOG4378|consen    6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTP---------------   69 (673)
T ss_pred             eeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCC---------------
Confidence            334444579999998877777766666666789999988654 4443  4567778876443200               


Q ss_pred             ecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEE
Q 001352          673 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA  752 (1093)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~  752 (1093)
                                                           +|.+-...                ....-.|++......++++
T Consensus        70 -------------------------------------~Vp~~~k~----------------~gd~~~Cv~~~s~S~y~~s   96 (673)
T KOG4378|consen   70 -------------------------------------EVPRVRKL----------------TGDNAFCVACASQSLYEIS   96 (673)
T ss_pred             -------------------------------------ccceeecc----------------ccchHHHHhhhhcceeeec
Confidence                                                 00000000                0111223333334478899


Q ss_pred             eeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeC-CeEEEEEc
Q 001352          753 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV  831 (1093)
Q Consensus       753 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~  831 (1093)
                      ++..+.|+|||+...                        +....+.  +|...|+++.+.-...|||++++ |.|.|..+
T Consensus        97 gG~~~~Vkiwdl~~k------------------------l~hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~  150 (673)
T KOG4378|consen   97 GGQSGCVKIWDLRAK------------------------LIHRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT  150 (673)
T ss_pred             cCcCceeeehhhHHH------------------------HHhhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence            999999999987642                        1111122  38899999999999999999995 88999999


Q ss_pred             cCceeEEEECCCCC-CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeee-cccccCCeEEEEEeCCC-CEEEEEeCC
Q 001352          832 MTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-LEGHSKRVTGLVFSDAL-NILVSSGGD  908 (1093)
Q Consensus       832 ~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~-l~~h~~~V~~l~~s~dg-~~l~s~s~d  908 (1093)
                      .++.....|....+ .+.-+.|+|....+|.+++.+|.|.+||+.....+.. .+.|..+...++|||.. .+|++.|.|
T Consensus       151 ~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D  230 (673)
T KOG4378|consen  151 KTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD  230 (673)
T ss_pred             ccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc
Confidence            99988888876544 5668999996666778899999999999997766544 45799999999999954 678999999


Q ss_pred             CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeeeecCCCCCEEEEEE
Q 001352          909 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATF  987 (1093)
Q Consensus       909 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~f  987 (1093)
                      ..|.+||.............         .+.+.++|+++|.+|++| ..|.|..||+...+..-.....|...|++++|
T Consensus       231 kki~~yD~~s~~s~~~l~y~---------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf  301 (673)
T KOG4378|consen  231 KKINIYDIRSQASTDRLTYS---------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF  301 (673)
T ss_pred             ceEEEeecccccccceeeec---------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence            99999999874432211111         258899999999999996 67899999998776655567789999999999


Q ss_pred             ccCC
Q 001352          988 SCDC  991 (1093)
Q Consensus       988 s~dg  991 (1093)
                      -|..
T Consensus       302 q~s~  305 (673)
T KOG4378|consen  302 QPSP  305 (673)
T ss_pred             eecc
Confidence            8765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=5.4e-17  Score=175.31  Aligned_cols=605  Identities=12%  Similarity=0.112  Sum_probs=360.2

Q ss_pred             CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC-----
Q 001352          334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-----  408 (1093)
Q Consensus       334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d-----  408 (1093)
                      |..+-.++.|+|.|  |+|-|+. ..|.+-|..+-+.+..                   +.-|...|+.+.|.|-     
T Consensus        14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~   71 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRD   71 (1062)
T ss_pred             CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchh
Confidence            34467889999999  6888875 6799999988887765                   5569999999999873     


Q ss_pred             -------CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeC---CCCcEEEEEEcCCCcEEEEECCCCce
Q 001352          409 -------GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSR  478 (1093)
Q Consensus       409 -------g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~  478 (1093)
                             .-+||++...|.|.+||...+..+.   .+..|..+|..++|-+   +.+. +|+.-....++.+|+..+|+.
T Consensus        72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen   72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence                   1267888889999999999876544   5678899999999865   3433 566666678999999999999


Q ss_pred             eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC------ceEEe-cCCCC--------------------
Q 001352          479 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDY-DAPGL--------------------  531 (1093)
Q Consensus       479 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~-~~~~~--------------------  531 (1093)
                      ............++.+.|-... .+..-+..|.+.+.+.-...      ....+ ..+..                    
T Consensus       148 ~Wk~~ys~~iLs~f~~DPfd~r-h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s  226 (1062)
T KOG1912|consen  148 FWKYDYSHEILSCFRVDPFDSR-HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS  226 (1062)
T ss_pred             eeccccCCcceeeeeeCCCCcc-eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence            9887766667777887776443 44444455565555432111      11111 11110                    


Q ss_pred             -----ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCC--CEEEEEeCCCcEE
Q 001352          532 -----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIK  604 (1093)
Q Consensus       532 -----~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~--~~l~~~~~dg~i~  604 (1093)
                           -...++|+|.-+.++....    ...+.++|++-..++....-..   +.+.-+.+-|++  ..+++.-.||.+.
T Consensus       227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~lt  299 (1062)
T KOG1912|consen  227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLT  299 (1062)
T ss_pred             hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEE
Confidence                 0123567886655544444    3339999999888877776555   555566666664  5789999999999


Q ss_pred             EEECCC----------------CceEEEEecCCCCCCCceEEEecC-CCEEEEEECCCeEEEEEcCCCceeeecc-----
Q 001352          605 IWDMNK----------------VQLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAAG-----  662 (1093)
Q Consensus       605 iwd~~~----------------~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----  662 (1093)
                      +|-.+.                +.....+..-... .....+..|. ...+++.-.+|...+|.+.+++......     
T Consensus       300 irvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~ie  378 (1062)
T KOG1912|consen  300 IRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIE  378 (1062)
T ss_pred             EEEeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccc
Confidence            997654                2222222111111 1122233343 4455556667888888887543221111     


Q ss_pred             --------------------------cccccceeeeecCCCceeeeeccCCceEecCCC-CCCCccceeecccccceecc
Q 001352          663 --------------------------VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-KEDVKPEISVEAENKSEVEK  715 (1093)
Q Consensus       663 --------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~~l~s~~~d~~i~~w~  715 (1093)
                                                +|.....+....|...........     .++. ..--..++.|...|+|.++|
T Consensus       379 l~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p-----~~n~~~~~~pLvAvGT~sGTV~vvd  453 (1062)
T KOG1912|consen  379 LVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDP-----GGNTPAGTVPLVAVGTNSGTVDVVD  453 (1062)
T ss_pred             ccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCC-----CCCccceeeeeEEeecCCceEEEEE
Confidence                                      122222222222221111100000     0000 11124678899999999999


Q ss_pred             eeeccCccccccccCccccccceEEEEeecCCceEEEeecc--ceeEEeeecCcccCcCcccccccCCcccCCCCCCcee
Q 001352          716 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM  793 (1093)
Q Consensus       716 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (1093)
                      +.++.......      .|...|.++.|..+.+.+-.+.+.  ..-..+               .+.+.+-++.+|....
T Consensus       454 vst~~v~~~fs------vht~~VkgleW~g~sslvSfsys~~n~~sg~v---------------rN~l~vtdLrtGlsk~  512 (1062)
T KOG1912|consen  454 VSTNAVAASFS------VHTSLVKGLEWLGNSSLVSFSYSHVNSASGGV---------------RNDLVVTDLRTGLSKR  512 (1062)
T ss_pred             ecchhhhhhhc------ccccceeeeeeccceeEEEeeeccccccccce---------------eeeEEEEEcccccccc
Confidence            87655444333      388999999998887754443321  000000               1234455666666444


Q ss_pred             eccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEc-CC---------------C
Q 001352          794 VNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------D  856 (1093)
Q Consensus       794 ~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------d  856 (1093)
                      ...+++ ....+|+.+..|.-|+||+... +.-+.+||+++..+++...-.-.-++.++|+ |.               .
T Consensus       513 fR~l~~-~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms  591 (1062)
T KOG1912|consen  513 FRGLQK-PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMS  591 (1062)
T ss_pred             cccCCC-CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhh
Confidence            433333 4688999999999999999997 6779999998877666554444458888888 31               1


Q ss_pred             CCEEEEEeCCCeEEEEEcCC-------cce-eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeee
Q 001352          857 NNVIAIGMDDSTILIYNARS-------SEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ  928 (1093)
Q Consensus       857 ~~~lasg~~dg~i~iwd~~~-------~~~-~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  928 (1093)
                      .+..+..+  +..+++.+..       +.. ....+.....+..++|-  +..|+.|..+|.+.+||+....-+.  ...
T Consensus       592 ~n~vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg--~~d  665 (1062)
T KOG1912|consen  592 ENLVVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRG--VRD  665 (1062)
T ss_pred             hceeeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccC--ccC
Confidence            12233333  2233333321       111 11111112234446674  6799999999999999987632111  111


Q ss_pred             cCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCC--CCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001352          929 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIH 1006 (1093)
Q Consensus       929 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~~~fs~dg~~l~t~~~dg~v~vw 1006 (1093)
                      .+. +.   .......+-|....+++-...-+.+||.+....+..+ .|-  +.++..+.+......++  ..|.++++-
T Consensus       666 ~p~-~r---a~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~  738 (1062)
T KOG1912|consen  666 SPD-PR---AHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVL--PNDNKERFR  738 (1062)
T ss_pred             CCC-ch---hhheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceec--CCCCceeEE
Confidence            111 11   1223334445433444445556889999888777765 333  33455555554444444  345577776


Q ss_pred             EcCCCce
Q 001352         1007 EASNLEV 1013 (1093)
Q Consensus      1007 d~~~~~~ 1013 (1093)
                      .+.....
T Consensus       739 ~m~mks~  745 (1062)
T KOG1912|consen  739 VMPMKSP  745 (1062)
T ss_pred             eccccCC
Confidence            6655433

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=7.1e-17  Score=174.44  Aligned_cols=495  Identities=13%  Similarity=0.104  Sum_probs=294.7

Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC----------CCcEEEEEEcCCC
Q 001352          397 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDDK  466 (1093)
Q Consensus       397 ~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d----------~~~l~l~s~~~d~  466 (1093)
                      ...-.++.|+|.| ++|.|+.. .|.+-|..+-+.+.   .+.-|...|+.+.|.|-          ...++++++...|
T Consensus        15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             cccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence            3446788999877 78887665 48888988766555   67789999999999763          2446789999999


Q ss_pred             cEEEEECCCCceeEEeecCCCCeEEeeecccCCc--cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCC
Q 001352          467 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGR  543 (1093)
Q Consensus       467 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~  543 (1093)
                      .|.+||...+..+..+..|..++..++|.+..+.  ..|++......+.+|+..+++....+........++.+.| |.+
T Consensus        90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r  169 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR  169 (1062)
T ss_pred             cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence            9999999999999999999999999999876543  4788888889999999999999888887777777788888 445


Q ss_pred             EEEEEecCCCCceeEEEEeCC-------CCeeeeeeecccc----------------cCCC------eEEEEEcCCCCEE
Q 001352          544 RLFSCGTSKEGESFLVEWNES-------EGAIKRTYQGLQL----------------QHNS------VSVVHFDTAKDQI  594 (1093)
Q Consensus       544 ~l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~----------------~~~~------v~~v~~~~~~~~l  594 (1093)
                      .+...+.    .|.+.+-+.-       .|+..+.-..|..                ....      ...++|+|.-+.+
T Consensus       170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~  245 (1062)
T KOG1912|consen  170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI  245 (1062)
T ss_pred             eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence            5544433    3334443321       1222222211110                0000      1135678876666


Q ss_pred             EEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCC--CEEEEEECCCeEEEEEcCCCceeeecccccccceeee
Q 001352          595 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS  672 (1093)
Q Consensus       595 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~  672 (1093)
                      +-......+.++|++-..++..+....+.  +.-+.+-|++  ..|++...||.+.+|-.+.........     ...+.
T Consensus       246 lfi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~-----~~~l~  318 (1062)
T KOG1912|consen  246 LFITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKP-----NASLS  318 (1062)
T ss_pred             EEEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCcccccc-----chhhc
Confidence            66677788999999999999888876553  5566777755  468999999999999876532111110     00000


Q ss_pred             ecCCCceeeeeccCCceEecCCCCCC-CccceeecccccceecceeeccCccccccccCccccccceEEEEeecC-----
Q 001352          673 VNPISTVTGAGIANGSVSVNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNG-----  746 (1093)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~-----  746 (1093)
                      ..-....-.+.+-.....+.+...|. ...++.--.+|.+.+|++..+.........     ...-+..+.|...     
T Consensus       319 ~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~-----~iel~~pf~f~~~~~~v~  393 (1062)
T KOG1912|consen  319 MDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS-----SIELVLPFDFNLSTKLVG  393 (1062)
T ss_pred             cccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc-----cccccccccccCceeehh
Confidence            00000000000000001111111222 333344445677788887643222111100     0001111111111     


Q ss_pred             CceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCe
Q 001352          747 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV  825 (1093)
Q Consensus       747 g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~  825 (1093)
                      ...++..+.||.           ...|.     ...-.++..........     .......+    .-.++|.|. .|+
T Consensus       394 k~~l~~LS~dg~-----------h~sGs-----~~~~~~p~p~~t~~~~~-----p~~n~~~~----~~pLvAvGT~sGT  448 (1062)
T KOG1912|consen  394 KTSLISLSDDGS-----------HSSGS-----TCVRMRPMPELTKVEND-----PGGNTPAG----TVPLVAVGTNSGT  448 (1062)
T ss_pred             hccccchhhcCC-----------CCCCc-----eeeecccCcccceeecC-----CCCCccce----eeeeEEeecCCce
Confidence            111222222220           00000     00000110000000000     00000000    013567776 599


Q ss_pred             EEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEE---------eCCCeEEEEEcCCccee--eeccc-ccCCeEEE
Q 001352          826 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG---------MDDSTILIYNARSSEVI--SKLEG-HSKRVTGL  893 (1093)
Q Consensus       826 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg---------~~dg~i~iwd~~~~~~~--~~l~~-h~~~V~~l  893 (1093)
                      |.++|+.++...+.+..|...|.++.|.. ..+++-.+         ..-+.+.+-|+.+|...  +.+++ ...+|+.+
T Consensus       449 V~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~i  527 (1062)
T KOG1912|consen  449 VDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAI  527 (1062)
T ss_pred             EEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceee
Confidence            99999999999999999999999999985 44333322         22246788899998542  33333 56789999


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEc
Q 001352          894 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH  946 (1093)
Q Consensus       894 ~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  946 (1093)
                      ..|.-|++|+..-.|.-+.+||+.+..     +++...-...   -++.+.|+
T Consensus       528 rvS~~~~yLai~Fr~~plEiwd~kt~~-----~lr~mS~a~P---~it~leWs  572 (1062)
T KOG1912|consen  528 RVSSSGRYLAILFRREPLEIWDLKTLR-----MLRLMSLALP---LITVLEWS  572 (1062)
T ss_pred             eecccCceEEEEecccchHHHhhccch-----HHHHHhhcCC---cEEEEeec
Confidence            999999999999999999999998733     3322222111   37888888

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.81  E-value=4.9e-18  Score=165.32  Aligned_cols=409  Identities=11%  Similarity=0.121  Sum_probs=260.1

Q ss_pred             EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352          402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  481 (1093)
Q Consensus       402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  481 (1093)
                      -++|||+|+|+|+++.- .+.|-|.++-+..+..    .--..|..+.|..|... .+.....|+.|.+|++...+-...
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence            47899999999999766 6888888876543321    22456888999999875 566778899999999999999999


Q ss_pred             eecCCCCeEEeeecccCCc-cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352          482 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  560 (1093)
Q Consensus       482 ~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i  560 (1093)
                      +.....++.+++|+|  || ..|.+...+-+|.+|.+.+..... +..+...+..++|+|||++.+.++.. |-...+.+
T Consensus        87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i  162 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI  162 (447)
T ss_pred             eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence            988889999999965  55 577788889999999998765543 33344566889999999999988742 22333444


Q ss_pred             EeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEE
Q 001352          561 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV  640 (1093)
Q Consensus       561 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  640 (1093)
                      ..-.....++.+....   ...+.+.|+|||+.+++         ||.--.-.+......   -++..++|+|.+++|++
T Consensus       163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~---lG~k~v~wsP~~qflav  227 (447)
T KOG4497|consen  163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERG---LGLKFVEWSPCNQFLAV  227 (447)
T ss_pred             HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEE---------ecchhhheeeeeeec---cceeEEEeccccceEEe
Confidence            4334445555665554   56788999999987765         443221121122211   24788999999999999


Q ss_pred             EECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeecc
Q 001352          641 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  720 (1093)
Q Consensus       641 ~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~  720 (1093)
                      |+.|+.+++.+--+-+.+..+- |...+                                      .|-+..+-..+...
T Consensus       228 GsyD~~lrvlnh~tWk~f~efl-hl~s~--------------------------------------~dp~~~~~~ke~~~  268 (447)
T KOG4497|consen  228 GSYDQMLRVLNHFTWKPFGEFL-HLCSY--------------------------------------HDPTLHLLEKETFS  268 (447)
T ss_pred             eccchhhhhhceeeeeehhhhc-cchhc--------------------------------------cCchhhhhhhhhcc
Confidence            9999999997654332222111 00000                                      00110000000000


Q ss_pred             CccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCC
Q 001352          721 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS  800 (1093)
Q Consensus       721 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (1093)
                      .            -.-...++.|.|..-         ...+|......+......   .++..-.+.+       +.+  
T Consensus       269 ~------------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~~~p---v~~~~lkp~t-------D~p--  315 (447)
T KOG4497|consen  269 I------------VQLLHHCLSFTPTDL---------EAHIWEESETIYEQQMTP---VKVHKLKPPT-------DFP--  315 (447)
T ss_pred             h------------hhhcccccccCCCcc---------ccCccccchhhhhhhhcc---eeeecccCCC-------CCC--
Confidence            0            000112333433221         011111100000000000   0000000001       111  


Q ss_pred             CCCCCeeEEEEccCCCEEEEEeC---CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001352          801 NSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  877 (1093)
Q Consensus       801 ~~~~~v~~l~~s~dg~~la~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~  877 (1093)
                      +....+.-++||+|..++|+-.|   +.+.+||+...+....+. ...+|....|.| +...|+.......+++|.....
T Consensus       316 nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~  393 (447)
T KOG4497|consen  316 NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGP  393 (447)
T ss_pred             CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCc
Confidence            23556778999999999999975   569999998766544443 556899999999 7777887777778999998765


Q ss_pred             ceeeecccccCCeEEEEEeCCCCEEEEEeCCCc
Q 001352          878 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ  910 (1093)
Q Consensus       878 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~  910 (1093)
                      .++.. .+..-.|..+.|.-+|..++..+.|.-
T Consensus       394 ~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  394 RVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             eEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence            55543 334467999999999999999998873

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.81  E-value=1.1e-17  Score=168.23  Aligned_cols=300  Identities=13%  Similarity=0.150  Sum_probs=216.3

Q ss_pred             ccceEEEEeecCCc-eEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc
Q 001352          735 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  813 (1093)
Q Consensus       735 ~~~i~~l~~s~~g~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  813 (1093)
                      ..++.++.|.+++. .+++++.|..+++|.+........+               ........+.  .|...|+++.|+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls--~H~~aVN~vRf~p   75 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLS--RHTRAVNVVRFSP   75 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeeccc--CCcceeEEEEEcC
Confidence            45788899988877 8999999999999998765321111               0112222233  3999999999999


Q ss_pred             CCCEEEEEeC-CeEEEEEcc--------C--------ceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001352          814 NDAYLFSASG-GVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS  876 (1093)
Q Consensus       814 dg~~la~~~d-g~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~  876 (1093)
                      +|..||+|+| |.+.+|-..        +        +...+.+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus        76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~  154 (434)
T KOG1009|consen   76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA  154 (434)
T ss_pred             CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence            9999999996 889999765        3        445667888999999999999 999999999999999999999


Q ss_pred             cceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeee---eecCCCcccC------------CCCce
Q 001352          877 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQTPDGVMTL------------APSET  941 (1093)
Q Consensus       877 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~------------~~~v~  941 (1093)
                      |+....+.+|..-|..++|.|-++++++-+.|...+++.+.........-   +....++...            ..-..
T Consensus       155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr  234 (434)
T KOG1009|consen  155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR  234 (434)
T ss_pred             ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence            99999999999999999999999999999999977777766533222111   1111111100            02356


Q ss_pred             EEEEccCCCEEEEE-----eCC-----eEEEEEcCCcceeeeeecCCCCCEEEEEEcc------------------CCCE
Q 001352          942 HIQFHKDQTRFLLV-----HET-----HLAIYEAEELTCLKQWFPISSVPISQATFSC------------------DCRM  993 (1093)
Q Consensus       942 ~~~~s~dg~~l~~~-----~d~-----~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~------------------dg~~  993 (1093)
                      .++|+|||.+|++.     ..+     ..++|+-..........++-..++..+.|+|                  -+-.
T Consensus       235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv  314 (434)
T KOG1009|consen  235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV  314 (434)
T ss_pred             hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence            78999999999972     222     3456655443333322344455666677765                  1223


Q ss_pred             EEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352          994 VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus       994 l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
                      ++.++ ...|.|||.++-..++......|.+.+         .++|++ ||..|+..+.||-+-+-.+..
T Consensus       315 faiAt-~~svyvydtq~~~P~~~v~nihy~~iT---------Diaws~-dg~~l~vSS~DGyCS~vtfe~  373 (434)
T KOG1009|consen  315 FAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAIT---------DIAWSD-DGSVLLVSSTDGFCSLVTFEP  373 (434)
T ss_pred             EEEee-cceEEEeccccccceEEEeeeeeeeec---------ceeecC-CCcEEEEeccCCceEEEEEcc
Confidence            44554 458999999998888776644443333         788998 699999999999777655543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.81  E-value=3.9e-18  Score=173.84  Aligned_cols=267  Identities=15%  Similarity=0.135  Sum_probs=199.7

Q ss_pred             ecCCCCCeEEEEECCCC--CEEEEEEcCCEEEEEEccCCCc-ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352          393 VRDPGVSVNRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  469 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg--~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  469 (1093)
                      ..-+.++|++++|+|..  +++|+|..-|.|-+||+.+.+. ......+..|..+|.++.|+|.+.. .+++.+.||+|+
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s-~i~ssSyDGtiR  260 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS-QIYSSSYDGTIR  260 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh-heeeeccCceee
Confidence            33488999999999954  6889999999999999963322 2334457789999999999998765 789999999999


Q ss_pred             EEECCCCce--eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCC-EE
Q 001352          470 VWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGR-RL  545 (1093)
Q Consensus       470 vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~-~l  545 (1093)
                      .-|++++..  +.++..-...+.++.|.  .+...++.+..=|...+||+++.+. ...+..|...|.+++++|-.. ++
T Consensus       261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~--~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l  338 (498)
T KOG4328|consen  261 LQDFEGNISEEVLSLDTDNIWFSSLDFS--AESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL  338 (498)
T ss_pred             eeeecchhhHHHhhcCccceeeeecccc--CCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence            999987743  34443344445555554  3445677777777999999998776 445667777999999999665 56


Q ss_pred             EEEecCCCCceeEEEEeCCCCeeeee-eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC----CCCceEEEEecC
Q 001352          546 FSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM----NKVQLLTTIDAG  620 (1093)
Q Consensus       546 ~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~----~~~~~~~~~~~~  620 (1093)
                      ++++.    +.+.+|||++.-..... +-..-.|...|.+..|+|.+..|++.+.|..|+|||.    ....+...+...
T Consensus       339 aT~s~----D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn  414 (498)
T KOG4328|consen  339 ATASL----DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN  414 (498)
T ss_pred             eeccc----CcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeecc
Confidence            66665    77799999986544442 2222224488999999999989999999999999998    344455555433


Q ss_pred             CCC---CCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccc
Q 001352          621 GGL---PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD  666 (1093)
Q Consensus       621 ~~~---~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  666 (1093)
                      ...   -.....+|.|+..++++|-.-..|-|++...++.+..+..+..
T Consensus       415 ~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~  463 (498)
T KOG4328|consen  415 NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPES  463 (498)
T ss_pred             CcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccc
Confidence            221   1234578999999999999999999999998887766554433

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.81  E-value=2.1e-18  Score=171.23  Aligned_cols=263  Identities=16%  Similarity=0.215  Sum_probs=185.3

Q ss_pred             ccCCCCceeeeecCCCc-eEEEEEccCCcEEEEecCCCce-eEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC-
Q 001352          332 IEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQK-LFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-  408 (1093)
Q Consensus       332 ~~h~~~V~~~~~spdg~-~llasg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d-  408 (1093)
                      .+|.+.++.+.-++-|+ .++|+=+..|.|.|||+...-. +..-.+.+-+    ...-....+.+|...=..++|||- 
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~LdWSp~~  223 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYGLDWSPIK  223 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccceeeeccccc
Confidence            35777888888887653 3566667789999999854211 1000000000    011112337789999999999993 


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC---ceeEEeecC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGH  485 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~~~h  485 (1093)
                      -..|++|.-.+.|++|...+|.-..-...+.+|+..|-.++|||..+. +++|||.||+|+|||++.+   .++.+ +.|
T Consensus       224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh  301 (440)
T KOG0302|consen  224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVST-KAH  301 (440)
T ss_pred             ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEe-ecc
Confidence            235778877778999999987654444457789999999999999877 8999999999999999988   33443 789


Q ss_pred             CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001352          486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  562 (1093)
Q Consensus       486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd  562 (1093)
                      .+.|+.+.|+..  ..+|++|+.||+++|||++..   ..+..+..|..+|+++.|+|...-++.++.   .+.+|.+||
T Consensus       302 ~sDVNVISWnr~--~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~QitiWD  376 (440)
T KOG0302|consen  302 NSDVNVISWNRR--EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQITIWD  376 (440)
T ss_pred             CCceeeEEccCC--cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCCcEEEEE
Confidence            999999999644  349999999999999999864   456688999999999999996654444332   277899999


Q ss_pred             CCCCee----------------eeeeecccccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 001352          563 ESEGAI----------------KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWD  607 (1093)
Q Consensus       563 ~~~~~~----------------~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd  607 (1093)
                      +..-.-                .+.+-.|. ....+.-+.|++.- .++++.+.|| +.||.
T Consensus       377 lsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  377 LSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             eeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            863211                01111121 12467778888764 4666677777 45553

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.80  E-value=1e-17  Score=163.02  Aligned_cols=290  Identities=14%  Similarity=0.191  Sum_probs=207.0

Q ss_pred             ceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC-------CCCC
Q 001352          338 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-------PDGS  410 (1093)
Q Consensus       338 V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-------~dg~  410 (1093)
                      ...+.|||||.- +.+-+.|..+.+|++...-.-....-.      ........+--.....|...+|-       |+..
T Consensus        52 ~kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~  124 (406)
T KOG2919|consen   52 LKGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGP------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN  124 (406)
T ss_pred             hccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCc------cccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence            346789999996 667789999999998431110000000      00000000011134567777775       6788


Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEeccccc---cEEEEEeeCCCCcEEEEEEcCCCcEEEEEC-CCCcee--EEe--
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSF--  482 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~---~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~-~~~~~~--~~~--  482 (1093)
                      ++|+.+.+.-|++||.-+|+....... ..|..   ...+++|+|||.  .|+ ++...+|+++|+ +.|+.-  ...  
T Consensus       125 l~a~ssr~~PIh~wdaftG~lraSy~~-ydh~de~taAhsL~Fs~DGe--qlf-aGykrcirvFdt~RpGr~c~vy~t~~  200 (406)
T KOG2919|consen  125 LFAVSSRDQPIHLWDAFTGKLRASYRA-YDHQDEYTAAHSLQFSPDGE--QLF-AGYKRCIRVFDTSRPGRDCPVYTTVT  200 (406)
T ss_pred             eeeeccccCceeeeeccccccccchhh-hhhHHhhhhheeEEecCCCC--eEe-ecccceEEEeeccCCCCCCcchhhhh
Confidence            999999999999999999986443222 23544   346899999999  455 455789999998 555432  111  


Q ss_pred             ---ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352          483 ---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  559 (1093)
Q Consensus       483 ---~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~  559 (1093)
                         .+..+.+.+++|+|. +...++.++...++-++.-...+....+.+|.+.|+.+.|.++|+.|++++..   +..|.
T Consensus       201 ~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl  276 (406)
T KOG2919|consen  201 KGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKIL  276 (406)
T ss_pred             cccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeEE
Confidence               123667888899876 44689999999999999999999999999999999999999999999998763   55699


Q ss_pred             EEeCCC-CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEecCCCCCCCceEEEecCCCE
Q 001352          560 EWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTL  637 (1093)
Q Consensus       560 iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~  637 (1093)
                      .||++. +.++..+..|....+.-.-....|++++|++|+.||.|++||+.+ |..+..+..+.  ..++.++++|--.+
T Consensus       277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--d~vNgvslnP~mpi  354 (406)
T KOG2919|consen  277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--DTVNGVSLNPIMPI  354 (406)
T ss_pred             EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc--ccccceecCcccce
Confidence            999975 456666766662122223345678899999999999999999998 66666665543  34899999999888


Q ss_pred             EEEEECC
Q 001352          638 LAVIANE  644 (1093)
Q Consensus       638 l~~~~~d  644 (1093)
                      +++++..
T Consensus       355 latssGq  361 (406)
T KOG2919|consen  355 LATSSGQ  361 (406)
T ss_pred             eeeccCc
Confidence            8877654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.80  E-value=8e-18  Score=168.08  Aligned_cols=237  Identities=16%  Similarity=0.261  Sum_probs=185.9

Q ss_pred             eecCCCCCeEEEEECC-CCCEEEEEEcCCEEEEEEccCCCc----ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC
Q 001352          392 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  466 (1093)
Q Consensus       392 ~~~~h~~~V~~v~~s~-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~  466 (1093)
                      +..||.++|..++|+| +...||+||.|.+|.||.+-.+..    ......+.||...|--++|+|...+ +|+|++.|.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn  154 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN  154 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence            4789999999999999 678899999999999999876543    2345578899999999999999877 799999999


Q ss_pred             cEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-ceEEEEEccCCCEE
Q 001352          467 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRL  545 (1093)
Q Consensus       467 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l  545 (1093)
                      +|.+||+.+|+.+.++. |...|++++|+  .||.++++.+.|..|||||.++++.+..-..|.+ .-..+.|-.+|. +
T Consensus       155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i  230 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I  230 (472)
T ss_pred             eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence            99999999999999988 99999999994  5778999999999999999999988887766654 455667888898 6


Q ss_pred             EEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCce-EEEEecCCCC
Q 001352          546 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGL  623 (1093)
Q Consensus       546 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~  623 (1093)
                      ++.+.++-.+.++-+||...-+.-..+.... ....|.--.|.++.+.++. |-.|+.|+.|.+....+ +.-+..-...
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~  309 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK  309 (472)
T ss_pred             eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence            6666667678899999987644332222222 1345666778898887766 55899999999987663 3333322333


Q ss_pred             CCCceEEEecC
Q 001352          624 PENPRICFNKN  634 (1093)
Q Consensus       624 ~~v~~v~~s~~  634 (1093)
                      .+-..+.|.|.
T Consensus       310 epQRG~g~mPK  320 (472)
T KOG0303|consen  310 EPQRGMGFMPK  320 (472)
T ss_pred             Ccccccccccc
Confidence            44566777764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=4.3e-19  Score=192.78  Aligned_cols=287  Identities=19%  Similarity=0.279  Sum_probs=221.5

Q ss_pred             HHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352          326 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  405 (1093)
Q Consensus       326 ~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  405 (1093)
                      +.++.|.||...|.|+.|...|.| +++|+.|..|+||..+++.++..                   ..||++.|+.++.
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlav  240 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAV  240 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhcc-------------------CCCCccccchhcc
Confidence            455678899999999999999986 89999999999999999999876                   8899999999999


Q ss_pred             CCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE---e
Q 001352          406 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---F  482 (1093)
Q Consensus       406 s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~---~  482 (1093)
                      +.+..++|+++.|..|++|.+..+..+.   .+.||++.|++++|+|-      .+.+.||++++||..=.-.+..   +
T Consensus       241 s~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~  311 (1113)
T KOG0644|consen  241 SSNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPL  311 (1113)
T ss_pred             chhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCC
Confidence            9999999999999999999999998766   67899999999999994      3678899999999771111111   1


Q ss_pred             ec-CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCC-EEEEEecCCCCceeEEE
Q 001352          483 EG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVE  560 (1093)
Q Consensus       483 ~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~~~~~~~i~i  560 (1093)
                      +. ...-+.++.|  ..++..+++++.|+.-..|.+....      .+...+.-+.++.|-. +.+++-    .+..+.+
T Consensus       312 ~~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar----~~~~~~v  379 (1113)
T KOG0644|consen  312 KFTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTAR----NDHRLCV  379 (1113)
T ss_pred             Ccccccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeee----eeeEeee
Confidence            11 1233444444  4456678999999988887553211      1111222222332322 222222    2667899


Q ss_pred             EeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEE
Q 001352          561 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  639 (1093)
Q Consensus       561 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  639 (1093)
                      |++.+|.+.+.+.+|.   ..+..+.++|-+..++ +++.||...|||+-.|.+++..... + ..+....||++|..++
T Consensus       380 wnl~~g~l~H~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~  454 (1113)
T KOG0644|consen  380 WNLYTGQLLHNLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIA  454 (1113)
T ss_pred             eecccchhhhhhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEe
Confidence            9999999999999988   8999999999877665 5899999999999999888776633 2 3467789999999999


Q ss_pred             EEECCCeEEEEEcCCCcee
Q 001352          640 VIANENRIKILETPESNSV  658 (1093)
Q Consensus       640 ~~~~dg~i~iw~~~~~~~~  658 (1093)
                      ....-|.+.|.....+...
T Consensus       455 lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  455 LSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             cCCCCCceEEeccCCCccc
Confidence            9998999999887765443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=1.3e-16  Score=165.35  Aligned_cols=498  Identities=14%  Similarity=0.120  Sum_probs=295.6

Q ss_pred             CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEe------eCC-CCcEEEEEEcCCCc
Q 001352          395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAP-CKQISVITCGDDKT  467 (1093)
Q Consensus       395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~------s~d-~~~l~l~s~~~d~~  467 (1093)
                      .|..-|.|+.|+.+...+.+++++..+.-||+.+.+ .... .+  ...-|....+      -.. +.. .++.++.||.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~-~~--p~df~pt~~h~~~rs~~~g~~~d-~~~i~s~DGk   86 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA-KL--PDDFVPTDMHLGGRSSGGGKGSD-TLLICSNDGR   86 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh-hC--CcccCCccccccccccCCCCCcc-eEEEEcCCce
Confidence            367778899999888777776655555555555433 2111 11  1111111111      111 112 5788888999


Q ss_pred             EEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001352          468 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  547 (1093)
Q Consensus       468 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~  547 (1093)
                      +.+.+ +.|+.-..+..|.+.+.+-.|++  ||.-|++++.||.|++|.-. +-...++.....+|.|++|.|+.+.++.
T Consensus        87 f~il~-k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~  162 (737)
T KOG1524|consen   87 FVILN-KSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVF  162 (737)
T ss_pred             EEEec-ccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEE
Confidence            99998 88888899999999999999954  66789999999999999632 2233344455668999999999998888


Q ss_pred             EecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCc
Q 001352          548 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  627 (1093)
Q Consensus       548 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  627 (1093)
                      |.     .+.+.+-.+.....+-..+.|.   +-|.++.|++..+.+++|++|-..+|||... +.+..-..+  ..+|+
T Consensus       163 c~-----g~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~--ey~IT  231 (737)
T KOG1524|consen  163 CQ-----GGHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAE--EYAIT  231 (737)
T ss_pred             ec-----CCeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeecccC-cccccCChh--cccee
Confidence            75     3347777777777777788887   9999999999999999999999999999754 444333333  34699


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001352          628 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  707 (1093)
Q Consensus       628 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~  707 (1093)
                      +++|.|+ ..+++++.+ ++++   .                                                      
T Consensus       232 Sva~npd-~~~~v~S~n-t~R~---~------------------------------------------------------  252 (737)
T KOG1524|consen  232 SVAFNPE-KDYLLWSYN-TARF---S------------------------------------------------------  252 (737)
T ss_pred             eeeeccc-cceeeeeee-eeee---c------------------------------------------------------
Confidence            9999999 666666652 3331   0                                                      


Q ss_pred             cccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCC
Q 001352          708 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR  787 (1093)
Q Consensus       708 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1093)
                                              ....+.|..++||+||..+++++..|.+.+=-.-..                    
T Consensus       253 ------------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq--------------------  288 (737)
T KOG1524|consen  253 ------------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQ--------------------  288 (737)
T ss_pred             ------------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehh--------------------
Confidence                                    013457888999999999999998887765211000                    


Q ss_pred             CCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE-eCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001352          788 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD  866 (1093)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d  866 (1093)
                                      ..+       -+.+=++. ....|.+-|+.++.+  ........+...+++.  + +|+++. .
T Consensus       289 ----------------~l~-------~~n~~~t~~~r~~I~vrdV~~~v~--d~LE~p~rv~k~sL~Y--~-hLvvaT-s  339 (737)
T KOG1524|consen  289 ----------------QLV-------SGNLKATSKSRKSITVRDVATGVQ--DILEFPQRVVKFSLGY--G-HLVVAT-S  339 (737)
T ss_pred             ----------------hhh-------hccceeEeeccceEEeehhhhhHH--HHhhCccceeeeeece--e-EEEEEe-c
Confidence                            000       00011111 234566667665543  2222445566666554  2 344333 2


Q ss_pred             CeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEc
Q 001352          867 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH  946 (1093)
Q Consensus       867 g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  946 (1093)
                      ..|++|.-......-.+.+....+.-+.-+ ...+++  ....+|.++..+......    ..++|...  .....-..|
T Consensus       340 ~qvyiys~knwntpiiidgre~tr~lieq~-ek~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rtls  410 (737)
T KOG1524|consen  340 LQVYIYSEKNWNTPIIIDGREDTRNLIEQG-EKYFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRTLS  410 (737)
T ss_pred             cEEEEEecCCccCcEEEeccccchhHhhhh-hhheEE--ecCcEEEEEEecCceecC----CCCCCccc--ccccceeee
Confidence            467777765544334444433333222211 112222  223345666555422111    01111111  011122333


Q ss_pred             cCCCEEEE--EeC-CeEEEEEc-CCcceeeee-ecCCCCCEEEEEEc----cCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001352          947 KDQTRFLL--VHE-THLAIYEA-EELTCLKQW-FPISSVPISQATFS----CDCRMVFTSFVDGTLSIHEASNLEVQCRI 1017 (1093)
Q Consensus       947 ~dg~~l~~--~~d-~~i~vwd~-~~~~~~~~~-~~~h~~~v~~~~fs----~dg~~l~t~~~dg~v~vwd~~~~~~~~~~ 1017 (1093)
                      -....|+.  ..| .-++++|. .+|+....- ...|...|..++..    ++++.++.-...+.+.|=.+.+.....++
T Consensus       411 LandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I  490 (737)
T KOG1524|consen  411 LANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEI  490 (737)
T ss_pred             cccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhh
Confidence            33444555  233 35888998 666654321 11244455555553    45567777777777777666554333222


Q ss_pred             ccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCC
Q 001352         1018 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1065 (1093)
Q Consensus      1018 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1065 (1093)
                      .-....        |  ..++|+  |...+++|-.|+.+.+|=.+...
T Consensus       491 ~KiGTm--------V--htLawn--dttNiLcglqDt~fsVWy~pn~v  526 (737)
T KOG1524|consen  491 YKIGTM--------V--HTLAWN--DTTNILCGLQDTCFSVWYYPNEV  526 (737)
T ss_pred             hhhhhh--------h--hhhhhc--cccceeeeeccceEEEEEcCCcc
Confidence            211111        1  246677  46789999999999999876543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.79  E-value=3.6e-17  Score=159.35  Aligned_cols=337  Identities=12%  Similarity=0.151  Sum_probs=227.3

Q ss_pred             EEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceE
Q 001352          536 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL  614 (1093)
Q Consensus       536 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~  614 (1093)
                      .+|||+|+++++++     +..+.+-|..+-+..+.+....    .|..+.|..+..++++ ...++.|.+|++...+..
T Consensus        14 c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld----ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~   84 (447)
T KOG4497|consen   14 CSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD----KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY   84 (447)
T ss_pred             eeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH----HhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence            67999999999997     4468899988888777776543    6788899999888887 568889999999988887


Q ss_pred             EEEecCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecC
Q 001352          615 TTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  693 (1093)
Q Consensus       615 ~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1093)
                      ..+...  ..++.+++|||||+.+... .-+-.|.+|.+.+........                               
T Consensus        85 ckIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-------------------------------  131 (447)
T KOG4497|consen   85 CKIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-------------------------------  131 (447)
T ss_pred             EEeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-------------------------------
Confidence            777644  4568999999999766654 458889999988663322110                               


Q ss_pred             CCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCc
Q 001352          694 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST  773 (1093)
Q Consensus       694 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~  773 (1093)
                                                              ....+..++|++||++.+..+.....-.+.+.        
T Consensus       132 ----------------------------------------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~--------  163 (447)
T KOG4497|consen  132 ----------------------------------------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS--------  163 (447)
T ss_pred             ----------------------------------------cccCceeEEECCCCceeeeeecccHHHHHHHH--------
Confidence                                                    11234667888888866655543111000000        


Q ss_pred             ccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe---CCeEEEEEccCceeEEEECCCCCCeEEE
Q 001352          774 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSL  850 (1093)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l  850 (1093)
                            ..+-|.+.     ..+.+    ..-..+.+.|+|||..||+-.   +-.|..|..            .-.+..+
T Consensus       164 ------~c~~W~ll-----~~f~~----dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------------~lG~k~v  216 (447)
T KOG4497|consen  164 ------SCKAWILL-----KEFKL----DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------GLGLKFV  216 (447)
T ss_pred             ------hhHHHHHH-----HhcCC----CcccccCceECCCCcEEEEecchhhheeeeeee------------ccceeEE
Confidence                  01112111     11111    334456788999988887754   223333332            2357788


Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEEcCCcce---------------------------------------------------
Q 001352          851 AFNPHDNNVIAIGMDDSTILIYNARSSEV---------------------------------------------------  879 (1093)
Q Consensus       851 ~~s~~d~~~lasg~~dg~i~iwd~~~~~~---------------------------------------------------  879 (1093)
                      +|+| .+++|++|+.|+.++|-+--+.+.                                                   
T Consensus       217 ~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~  295 (447)
T KOG4497|consen  217 EWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETI  295 (447)
T ss_pred             Eecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhh
Confidence            8999 888999999998888755322111                                                   


Q ss_pred             ---------eeecc------cccCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCceeeeeeeecCCCcccCCCCceE
Q 001352          880 ---------ISKLE------GHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH  942 (1093)
Q Consensus       880 ---------~~~l~------~h~~~V~~l~~s~dg~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  942 (1093)
                               +..++      ...-.+.-++||+|..+++|-..  -..+-+||+...+     +...+...    .+|.+
T Consensus       296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~-----l~avLiQk----~pira  366 (447)
T KOG4497|consen  296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK-----LHAVLIQK----HPIRA  366 (447)
T ss_pred             hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh-----hhhhhhhc----cceeE
Confidence                     11111      11123567999999999998643  3569999998744     22222222    25899


Q ss_pred             EEEccCCCEEEEE-eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCC
Q 001352          943 IQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1001 (1093)
Q Consensus       943 ~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg 1001 (1093)
                      ..|.|....|++. ....+++|......++....  .+-.|..+.|.-+|..++..+.|-
T Consensus       367 f~WdP~~prL~vctg~srLY~W~psg~~~V~vP~--~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  367 FEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK--KGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             EEeCCCCceEEEEcCCceEEEEcCCCceEEecCC--CCceeeeEEecCCCcEEEEEcCCc
Confidence            9999999988884 55679999988766666533  357899999999999999999885

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.78  E-value=1.9e-17  Score=161.03  Aligned_cols=198  Identities=16%  Similarity=0.194  Sum_probs=153.0

Q ss_pred             CeeEEEEccCCCEEEEEeCCeEEEEEc-cCceeEEE---E----CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001352          805 AVPCFALSKNDAYLFSASGGVISLYIV-MTFKTILT---I----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS  876 (1093)
Q Consensus       805 ~v~~l~~s~dg~~la~~~dg~i~iwd~-~~~~~~~~---~----~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~  876 (1093)
                      ...+++|+|||..|..|....|+++|+ ..|+.-..   +    .+..+-|.+++|+|.+.+.+|+|+....+-||.-..
T Consensus       160 aAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~  239 (406)
T KOG2919|consen  160 AAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG  239 (406)
T ss_pred             hheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence            345899999999999999999999999 44432211   1    123567899999998888999999999999999999


Q ss_pred             cceeeecccccCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE
Q 001352          877 SEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV  955 (1093)
Q Consensus       877 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~  955 (1093)
                      ++++..+-+|.+.|+.+.|.+||+.|.+|+. |-.|..||+....    ..+-.+..|......-......|+|++|++|
T Consensus       240 ~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG  315 (406)
T KOG2919|consen  240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGEILASG  315 (406)
T ss_pred             CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCCceeecc
Confidence            9999999999999999999999999999886 6679999998633    1222333333211122345668999999996


Q ss_pred             -eCCeEEEEEcCC-cceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001352          956 -HETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus       956 -~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
                       .+|.|++||+.+ |..+.. ...|+..+..+++.|-=.+++|++..   ++|..++
T Consensus       316 ~tdG~V~vwdlk~~gn~~sv-~~~~sd~vNgvslnP~mpilatssGq---r~f~~~~  368 (406)
T KOG2919|consen  316 DTDGSVRVWDLKDLGNEVSV-TGNYSDTVNGVSLNPIMPILATSSGQ---RIFKYPK  368 (406)
T ss_pred             CCCccEEEEecCCCCCcccc-cccccccccceecCcccceeeeccCc---eeecCCC
Confidence             899999999998 665555 55688999999999987778887654   3454433

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.78  E-value=3.5e-18  Score=169.67  Aligned_cols=173  Identities=22%  Similarity=0.365  Sum_probs=146.3

Q ss_pred             HHHHHhhccCCCCceeeeecC--CCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEE
Q 001352          325 KTVAQTLIEGSSSPMSMDFHP--VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  402 (1093)
Q Consensus       325 ~~~~~~l~~h~~~V~~~~~sp--dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  402 (1093)
                      .+-+.++.+|..+=.+++|||  .|+  |++|..-+.|++|...+|.-...                ..-+.+|+..|-.
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~--LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVED  262 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIKTGR--LLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVED  262 (440)
T ss_pred             cCceEEecccCccceeeecccccccc--cccCccccceEeeeeccCceeec----------------Cccccccccchhh
Confidence            345677889999999999999  454  78888889999999998764332                1226679999999


Q ss_pred             EEECCC-CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC---CCce
Q 001352          403 VVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSR  478 (1093)
Q Consensus       403 v~~s~d-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~  478 (1093)
                      ++|||. ...||+||-||+|+|||+..+.....+ ..+.|.+.|+.++|+.+-.  +|++|+.||+++|||++   .+++
T Consensus       263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~p  339 (440)
T KOG0302|consen  263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQP  339 (440)
T ss_pred             hccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCc
Confidence            999995 568999999999999999998543333 3478999999999999887  89999999999999987   4678


Q ss_pred             eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC
Q 001352          479 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS  519 (1093)
Q Consensus       479 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  519 (1093)
                      +..|+.|..+|+++.|+|..+ ..|++++.|.+|.+||+..
T Consensus       340 VA~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  340 VATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             ceeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence            899999999999999998866 5888899999999999864

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=7.4e-18  Score=171.37  Aligned_cols=253  Identities=13%  Similarity=0.189  Sum_probs=185.4

Q ss_pred             CceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccc------eeeeeeecCCCCCeEEEEECCC-CCEEEEEEcCC
Q 001352          347 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSM------LFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKH  419 (1093)
Q Consensus       347 g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~h~~~V~~v~~s~d-g~~las~~~d~  419 (1093)
                      |. ++|.|+.|..|.|||+.=...+.    +..-+.....      ..+.....+|+..|.+++|+.+ ...||+||.|.
T Consensus       192 gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~  266 (463)
T KOG0270|consen  192 GN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK  266 (463)
T ss_pred             cc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence            45 59999999999999986432221    0001100000      0012235589999999999986 45789999999


Q ss_pred             EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCC
Q 001352          420 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN  499 (1093)
Q Consensus       420 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  499 (1093)
                      +|++||+.+|++..   ++..|.+.|.+++|.|.... +|++|+.|++|.+.|.+........-...+.|-.++|.+...
T Consensus       267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se  342 (463)
T KOG0270|consen  267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE  342 (463)
T ss_pred             eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc
Confidence            99999999998766   66789999999999998766 899999999999999885333322222567788889876543


Q ss_pred             ccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEccCCCEEE-EEecCCCCceeEEEEeCCCCeeeeeeecccc
Q 001352          500 IHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLF-SCGTSKEGESFLVEWNESEGAIKRTYQGLQL  577 (1093)
Q Consensus       500 ~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~-~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~  577 (1093)
                       ..++++..||+|+-+|++.. ++..++..|..+|.++++++.-..++ +++.    ++.|.+|++..-.... ...|..
T Consensus       343 -~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~----d~~Vklw~~~~~~~~~-v~~~~~  416 (463)
T KOG0270|consen  343 -NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAST----DKVVKLWKFDVDSPKS-VKEHSF  416 (463)
T ss_pred             -eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccc----cceEEEEeecCCCCcc-cccccc
Confidence             57888899999999999987 67889999999999999998766544 4443    7789999986543321 122221


Q ss_pred             cCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceE
Q 001352          578 QHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLL  614 (1093)
Q Consensus       578 ~~~~v~~v~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~  614 (1093)
                      .-+...|.++.|+-.+++ .|+..+.++|||+.+...+
T Consensus       417 ~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  417 KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            224577788888866554 4778888999999876554

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.78  E-value=6e-16  Score=160.45  Aligned_cols=497  Identities=12%  Similarity=0.166  Sum_probs=287.2

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE--CCCCC
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW--SPDGS  410 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--s~dg~  410 (1093)
                      .|+..|.|+.|+.+.. ++.++ .|..+.+|.-.+..........--+       +.   -..|   +....-  -....
T Consensus        12 r~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~~~~p~df-------~p---t~~h---~~~rs~~~g~~~d   76 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEVAKLPDDF-------VP---TDMH---LGGRSSGGGKGSD   76 (737)
T ss_pred             ccceeEEeecccccce-EEEec-cCceEEEeecccchhhhhhhCCccc-------CC---cccc---ccccccCCCCCcc
Confidence            4777889999999987 45554 4555555544332222111100000       00   0001   000000  01235


Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  490 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~  490 (1093)
                      .++.++.||.+.|-+-.. +   ....+..|.+.|.+-.|+|||.  -|+|+|.||.|++|. ++|-...++.....+|+
T Consensus        77 ~~~i~s~DGkf~il~k~~-r---VE~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~  149 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKSA-R---VERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIR  149 (737)
T ss_pred             eEEEEcCCceEEEecccc-h---hhhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeE
Confidence            678888999888877543 2   2225778999999999999999  799999999999999 88887777777888999


Q ss_pred             EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352          491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  570 (1093)
Q Consensus       491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~  570 (1093)
                      |++|.|+.+ ..+++.  .+.+.+=.+.....+.....|.+-|.++.|++..+.+++++.    |....+||.. |..+.
T Consensus       150 c~~W~p~S~-~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf  221 (737)
T KOG1524|consen  150 CARWAPNSN-SIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLF  221 (737)
T ss_pred             EEEECCCCC-ceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Ccccc
Confidence            999987654 344443  345566566777778888999999999999999999999986    7789999954 55555


Q ss_pred             eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001352          571 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  650 (1093)
Q Consensus       571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  650 (1093)
                      .-..|.   .+|++++|.|+ ..++.++. ++++            +.. ...+.|..++||+||..+++|+..|.+.+=
T Consensus       222 ~S~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  222 TSAAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             cCChhc---cceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence            555555   89999999999 55555553 2333            211 123468899999999999999999987663


Q ss_pred             EcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccC
Q 001352          651 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP  730 (1093)
Q Consensus       651 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~  730 (1093)
                      -.-..+...                                       +..-++......+.+-|+...   .+..+.+|
T Consensus       284 ~~ieq~l~~---------------------------------------~n~~~t~~~r~~I~vrdV~~~---v~d~LE~p  321 (737)
T KOG1524|consen  284 YAIEQQLVS---------------------------------------GNLKATSKSRKSITVRDVATG---VQDILEFP  321 (737)
T ss_pred             eeehhhhhh---------------------------------------ccceeEeeccceEEeehhhhh---HHHHhhCc
Confidence            332221110                                       111111112222333332211   11222222


Q ss_pred             ccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEE
Q 001352          731 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA  810 (1093)
Q Consensus       731 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  810 (1093)
                           ..+....  -.-.+|++++.. .+++|.-                 +-|++.     ..++.    ....+.-+.
T Consensus       322 -----~rv~k~s--L~Y~hLvvaTs~-qvyiys~-----------------knwntp-----iiidg----re~tr~lie  367 (737)
T KOG1524|consen  322 -----QRVVKFS--LGYGHLVVATSL-QVYIYSE-----------------KNWNTP-----IIIDG----REDTRNLIE  367 (737)
T ss_pred             -----cceeeee--eceeEEEEEecc-EEEEEec-----------------CCccCc-----EEEec----cccchhHhh
Confidence                 2343333  223334444433 4444431                 112211     11110    011110000


Q ss_pred             EccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCC-----eEEEEEcCCCCCEEEEE--eCCCeEEEEEc-CCcceee-
Q 001352          811 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIG--MDDSTILIYNA-RSSEVIS-  881 (1093)
Q Consensus       811 ~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~lasg--~~dg~i~iwd~-~~~~~~~-  881 (1093)
                        ...+++......+|.+|..+ |+.......+...     -..+.+.   ...|+.-  .....+.+||. .+|+... 
T Consensus       368 --q~ek~fli~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLa---ndtLaird~ad~kvlhlFd~istgk~qgD  441 (737)
T KOG1524|consen  368 --QGEKYFLILDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLA---NDTLAIRDNADPKVLHLFDLISTGKRQGD  441 (737)
T ss_pred             --hhhhheEEecCcEEEEEEec-CceecCCCCCCcccccccceeeecc---cceEEeecCCCCeeEEeccCCCCCcccCC
Confidence              01123333333557777654 3332222212111     1233332   2244442  23347788998 6676542 


Q ss_pred             -ecccccCCeEEEEEe----CCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEe
Q 001352          882 -KLEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH  956 (1093)
Q Consensus       882 -~l~~h~~~V~~l~~s----~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~  956 (1093)
                       .+-.|...|..++..    ++.+.++.-...+.+.|=.+.+-... .+.+       ..+..|..++|+..-+.|+--.
T Consensus       442 gk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgke-e~I~-------KiGTmVhtLawndttNiLcglq  513 (737)
T KOG1524|consen  442 GKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKE-EEIY-------KIGTMVHTLAWNDTTNILCGLQ  513 (737)
T ss_pred             ccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCch-hhhh-------hhhhhhhhhhhccccceeeeec
Confidence             222366667666664    34567777777887877766542111 1111       1223588899999988888889


Q ss_pred             CCeEEEEEcCC
Q 001352          957 ETHLAIYEAEE  967 (1093)
Q Consensus       957 d~~i~vwd~~~  967 (1093)
                      |+.+.||-..+
T Consensus       514 Dt~fsVWy~pn  524 (737)
T KOG1524|consen  514 DTCFSVWYYPN  524 (737)
T ss_pred             cceEEEEEcCC
Confidence            99999998754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=3.8e-17  Score=163.31  Aligned_cols=236  Identities=14%  Similarity=0.206  Sum_probs=181.0

Q ss_pred             CCCEEEEE---EcCCEEEEEEc-cCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-------
Q 001352          408 DGSLLGVA---YSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-------  476 (1093)
Q Consensus       408 dg~~las~---~~d~~i~iwd~-~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-------  476 (1093)
                      +.++||+.   +..|...+--+ ++|+.-...-...||+++|..++|+|-+.+ .++|||.|.+|.||++..+       
T Consensus        43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~lt  121 (472)
T KOG0303|consen   43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLT  121 (472)
T ss_pred             CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcc
Confidence            45666654   22223333322 244433334456799999999999998877 8999999999999998755       


Q ss_pred             ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001352          477 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  556 (1093)
Q Consensus       477 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~  556 (1093)
                      +.+..+.+|...|..+.|+|... +.|++++.|.+|.+|++.+++....+. |...|.++.|+.||.++++.+.    |.
T Consensus       122 epvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck----DK  195 (472)
T KOG0303|consen  122 EPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK----DK  195 (472)
T ss_pred             cceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc----cc
Confidence            34677889999999999998865 689999999999999999999999888 8889999999999999999986    66


Q ss_pred             eEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe----CCCcEEEEECCCCce---EEEEecCCCCCCCceE
Q 001352          557 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL---LTTIDAGGGLPENPRI  629 (1093)
Q Consensus       557 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~----~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~v  629 (1093)
                      .|++||.++++.+..-.+|.  +..-..+.|-.++. +++.+    .+..+-+||..+-+.   ...+..   ...|.--
T Consensus       196 kvRv~dpr~~~~v~e~~~he--G~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt---SnGvl~P  269 (472)
T KOG0303|consen  196 KVRVIDPRRGTVVSEGVAHE--GAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDT---SNGVLLP  269 (472)
T ss_pred             eeEEEcCCCCcEeeeccccc--CCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEecc---CCceEEe
Confidence            79999999999998887777  33445566777887 55544    678899999776433   233322   2346666


Q ss_pred             EEecCCCEEEEEE-CCCeEEEEEcCCCc
Q 001352          630 CFNKNGTLLAVIA-NENRIKILETPESN  656 (1093)
Q Consensus       630 ~~s~~~~~l~~~~-~dg~i~iw~~~~~~  656 (1093)
                      -|.+|.+.++.++ .|+.|+-|.+....
T Consensus       270 FyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  270 FYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eecCCCCEEEEEecCCcceEEEEecCCC
Confidence            7788888776554 59999999998765

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=2.8e-18  Score=194.95  Aligned_cols=251  Identities=14%  Similarity=0.160  Sum_probs=197.8

Q ss_pred             CceeeeecCCCce---EEEEEccCCcEEEEecCCC---ceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352          337 SPMSMDFHPVQHT---LLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  410 (1093)
Q Consensus       337 ~V~~~~~spdg~~---llasg~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~  410 (1093)
                      .-..++|.+.|..   ++|.|..||.|.+||...-   .....                ......|++.|..+.|++.+.
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~----------------la~~~~h~G~V~gLDfN~~q~  129 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV----------------LATKSKHTGPVLGLDFNPFQG  129 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH----------------HhhhcccCCceeeeeccccCC
Confidence            5678899888876   6999999999999998762   11100                011556999999999999766


Q ss_pred             -EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC--
Q 001352          411 -LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA--  487 (1093)
Q Consensus       411 -~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~--  487 (1093)
                       +||+|+.||.|.|||+..-+.-.... -....+.|.+++|+..-.. +|++++.+|.+.|||++..+.+-.+..|..  
T Consensus       130 nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~  207 (1049)
T KOG0307|consen  130 NLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM  207 (1049)
T ss_pred             ceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCcc
Confidence             99999999999999998754322111 1124568999999988776 799999999999999999988877766654  


Q ss_pred             CeEEeeecccCCccEEEEEecCC--eEEEEEcCCCCc-eEEecCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeC
Q 001352          488 PVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNE  563 (1093)
Q Consensus       488 ~v~~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~  563 (1093)
                      .+..+.|+|+...+++++...|+  .|.+||++.... ..++..|...|.++.|++.+ ++|++++.    |+.|.+|+.
T Consensus       208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN~  283 (1049)
T KOG0307|consen  208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWNP  283 (1049)
T ss_pred             ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEecC
Confidence            46788999886654444444444  499999987554 45677999999999999977 77788775    677999999


Q ss_pred             CCCeeeeeeecccccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 001352          564 SEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ  612 (1093)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~~~~~  612 (1093)
                      ++++.+..+....   +.+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus       284 ~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  284 NTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCceEeeecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9999999988755   8899999999877 66678999999999987654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=1e-17  Score=175.51  Aligned_cols=262  Identities=15%  Similarity=0.198  Sum_probs=196.8

Q ss_pred             eecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEcc-----CCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC
Q 001352          392 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  466 (1093)
Q Consensus       392 ~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~  466 (1093)
                      .+..|.+.|++++|.|-...|++++.||++++|+++     ....+.++.++.+|.++|.|++.+++++  .+++|+.||
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg  366 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG  366 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence            377799999999999999999999999999999993     3344677889999999999999999999  799999999


Q ss_pred             cEEEEECCCC----------ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--ceE
Q 001352          467 TIKVWDAVTG----------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCT  534 (1093)
Q Consensus       467 ~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~  534 (1093)
                      +|+.|++...          .....+.||.+.|+.++++..++  .|++++.||+++.|+...... .++.....  --.
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            9999965421          23356789999999999987664  699999999999998766544 33333222  223


Q ss_pred             EEEEccCC-CEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc----cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001352          535 RMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  609 (1093)
Q Consensus       535 ~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~  609 (1093)
                      ++.+.... ...++...    .+.-.+++...+.....+.....    ....+..+..+|.....+++.+|+.|+++|..
T Consensus       444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence            44443322 12222111    12223344444444444432221    12357788899999999999999999999999


Q ss_pred             CCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccc
Q 001352          610 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL  664 (1093)
Q Consensus       610 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  664 (1093)
                      ++.++.....+  ...+.++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus       520 ~~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  520 TGKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             ccccchheeec--cceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence            99999887765  456899999999999999999999999999877666554433

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=6.5e-17  Score=160.79  Aligned_cols=303  Identities=12%  Similarity=0.108  Sum_probs=216.9

Q ss_pred             HHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEE-eeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352          326 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVV  404 (1093)
Q Consensus       326 ~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  404 (1093)
                      -|...+.+|.+-|.++.||.+|+ +||+|+.|..+++|+++.--..++ +++.             ..-..|...|.|++
T Consensus        47 ~~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~-------------~~~~~H~SNIF~L~  112 (609)
T KOG4227|consen   47 FCQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIG-------------VMEHPHRSNIFSLE  112 (609)
T ss_pred             hhhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCce-------------eccCccccceEEEE
Confidence            45667889999999999999998 699999999999999865332221 1111             11334668999999


Q ss_pred             ECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc-e--eEE
Q 001352          405 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-R--TYS  481 (1093)
Q Consensus       405 ~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~--~~~  481 (1093)
                      |....++|.+|..+++|...|+++.+.+... .-....+.|..+..+|..+  .+++.+.++.|.+||..... .  +..
T Consensus       113 F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~  189 (609)
T KOG4227|consen  113 FDLENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVL  189 (609)
T ss_pred             EccCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceee
Confidence            9999999999999999999999997655421 1112234899999999977  79999999999999987654 2  222


Q ss_pred             eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE-------ecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001352          482 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-------YDAPGLGCTRMAYSANGRRLFSCGTSKEG  554 (1093)
Q Consensus       482 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------~~~~~~~v~~~~~s~d~~~l~~~~~~~~~  554 (1093)
                      +........++.|+|... .+|++.+..+-+-+||.+.......       +......-.++.|+|+|+.+++.-.    
T Consensus       190 ~AN~~~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----  264 (609)
T KOG4227|consen  190 PANSGKNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----  264 (609)
T ss_pred             ecCCCccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----
Confidence            333455667778877543 6888999999999999987554321       1111223467889999999987643    


Q ss_pred             ceeEEEEeCCCCeeeeeeecccc----cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------------------
Q 001352          555 ESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------------------  611 (1093)
Q Consensus       555 ~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~-------------------  611 (1093)
                      ...-.+||+.+..+...-..|..    ....+.+++|..+- .+++|+.+=.|++|.+...                   
T Consensus       265 ~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~  343 (609)
T KOG4227|consen  265 GKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE  343 (609)
T ss_pred             cCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence            22345678776544322222221    11346778887654 4899999999999987531                   


Q ss_pred             ----ceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352          612 ----QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  653 (1093)
Q Consensus       612 ----~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  653 (1093)
                          +.+..+.+|  ...++.+.|+|...+|++.+..+.++||...
T Consensus       344 ~~i~~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  344 IFIEKELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             heecceeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence                112334444  4457899999999999999999999999765

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=7.3e-18  Score=173.05  Aligned_cols=302  Identities=16%  Similarity=0.229  Sum_probs=233.8

Q ss_pred             HHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352          326 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  405 (1093)
Q Consensus       326 ~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  405 (1093)
                      .+...|.+|.+-|..|.|...|. +|++|+.|..|.+||+.+++....+                  ..||...|....|
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f------------------~SGH~~NvfQaKF  193 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSF------------------ESGHCNNVFQAKF  193 (559)
T ss_pred             hhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCccccc------------------ccccccchhhhhc
Confidence            45567889999999999999998 6999999999999999998876531                  5589999988889


Q ss_pred             CC--CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe-
Q 001352          406 SP--DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-  482 (1093)
Q Consensus       406 s~--dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-  482 (1093)
                      -|  +.+-+++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ .|.|++.|+.+.-.|+.++.....+ 
T Consensus       194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~  272 (559)
T KOG1334|consen  194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFV  272 (559)
T ss_pred             cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceee
Confidence            88  4578999999999998876544444434467789999999999999887 7999999999999999887654433 


Q ss_pred             --ecCCC---CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce------EEe------cCCCCceEEEEEccCCCEE
Q 001352          483 --EGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VDY------DAPGLGCTRMAYSANGRRL  545 (1093)
Q Consensus       483 --~~h~~---~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~------~~~~~~v~~~~~s~d~~~l  545 (1093)
                        ..+..   ..++++..|.. ...+++++.|..+++||.+.....      ..+      ....-.|++++|+.++.-+
T Consensus       273 cr~~~~~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl  351 (559)
T KOG1334|consen  273 CREADEKERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL  351 (559)
T ss_pred             eeccCCccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence              22333   45677776653 358999999999999998653322      111      1223368999999777666


Q ss_pred             EEEecCCCCceeEEEEeCCCCe------------e-eeeeecccccCCCeEEEE-EcCCCCEEEEEeCCCcEEEEECCCC
Q 001352          546 FSCGTSKEGESFLVEWNESEGA------------I-KRTYQGLQLQHNSVSVVH-FDTAKDQILAAGDDHVIKIWDMNKV  611 (1093)
Q Consensus       546 ~~~~~~~~~~~~i~iwd~~~~~------------~-~~~~~~~~~~~~~v~~v~-~~~~~~~l~~~~~dg~i~iwd~~~~  611 (1093)
                      ++...    +..|+++....+.            . .+.++||... ..|..+- |.|..+++++|+.-|.|.||+-.++
T Consensus       352 LaSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~  426 (559)
T KOG1334|consen  352 LASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG  426 (559)
T ss_pred             eeeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchh
Confidence            65554    4458888543221            2 2347888732 2366665 5688899999999999999999999


Q ss_pred             ceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352          612 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       612 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      +.+..+.+..+  -|+|+.-+|--..||+.+-|..|+||...+.
T Consensus       427 eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  427 EIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             HHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            99998887766  4899999999999999999999999987544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.6e-16  Score=165.07  Aligned_cols=245  Identities=17%  Similarity=0.168  Sum_probs=163.5

Q ss_pred             EEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe-ecCCCCeEEeeecccCCccEEEEEecCCeEEE
Q 001352          436 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKA  514 (1093)
Q Consensus       436 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~v  514 (1093)
                      .++.||++.|++++|+.||.  +|++|+.|-.+.|||.-..+.++.+ .+|...|.++.|.|..+...+++|..|..|++
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            36889999999999999999  8999999999999999988888887 68999999999999999999999999999999


Q ss_pred             EEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCC-CE
Q 001352          515 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQ  593 (1093)
Q Consensus       515 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~  593 (1093)
                      +|+...+...                         .+   +        ...+..+.+..|.   ..|..++..|++ +.
T Consensus       122 fdl~~~~~~~-------------------------~d---~--------~~~~~~~~~~cht---~rVKria~~p~~Pht  162 (758)
T KOG1310|consen  122 FDLDSSKEGG-------------------------MD---H--------GMEETTRCWSCHT---DRVKRIATAPNGPHT  162 (758)
T ss_pred             Eecccccccc-------------------------cc---c--------Cccchhhhhhhhh---hhhhheecCCCCCce
Confidence            9987532210                         00   0        0011223334444   677888888888 67


Q ss_pred             EEEEeCCCcEEEEECCCCceE-EE-------EecCCCCCCCceEEEec-CCCEEEEEECCCeEEEEEcCCC-ceeeecc-
Q 001352          594 ILAAGDDHVIKIWDMNKVQLL-TT-------IDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPES-NSVDAAG-  662 (1093)
Q Consensus       594 l~~~~~dg~i~iwd~~~~~~~-~~-------~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~-  662 (1093)
                      +.++++||+++-+|++....- ..       .......-...++..+| +..+|++|+.|-..++||.+.. +....-. 
T Consensus       163 fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~  242 (758)
T KOG1310|consen  163 FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGT  242 (758)
T ss_pred             EEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcc
Confidence            888999999999999762211 00       01111122356888998 5678999999999999994321 1111111 


Q ss_pred             ---cccccceeee-ecCCCceeeeeccC------CceEecCCCCCCCccceeecccccceecceeeccCcccc
Q 001352          663 ---VLSDNLRKLS-VNPISTVTGAGIAN------GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  725 (1093)
Q Consensus       663 ---~~~~~i~~~~-~~~~~~~~~~~~~~------~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~  725 (1093)
                         .......|+. |+|......-+...      ..+.|    +|+|.-++..-....|.++++...+.....
T Consensus       243 ~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf----npNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  243 MNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF----NPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             ccCCCCcccchhheecCccccCcccccccceeeeEEEEE----CCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence               1111122222 22222211111011      13344    677877777766677888887755544333

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.74  E-value=4.3e-16  Score=149.58  Aligned_cols=282  Identities=18%  Similarity=0.286  Sum_probs=202.2

Q ss_pred             Cceeeeec--CCCceEEEEEcc----CCcEEEEec--CCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          337 SPMSMDFH--PVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       337 ~V~~~~~s--pdg~~llasg~~----dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      .+.++.||  |+.+..||.|+.    .+.|.|-.+  ++++.+...+                  ..|.-+++.+.|.||
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP~tK~~wiPd  107 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYPVTKLMWIPD  107 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCCccceEecCC
Confidence            67788888  666667999885    355555544  4455444322                  248899999999998


Q ss_pred             C-----CEEEEEEcCCEEEEEEccCCC-cccceEEe-----ccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352          409 G-----SLLGVAYSKHIVQLYAYHGGS-DARQQLEI-----DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  477 (1093)
Q Consensus       409 g-----~~las~~~d~~i~iwd~~~~~-~~~~~~~~-----~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  477 (1093)
                      .     ++||+++ | .+++|.+...+ .+.....+     ..+..++++..|+.-... ++.+++-|-+..|||+++|.
T Consensus       108 ~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCTiWdie~~~  184 (364)
T KOG0290|consen  108 SKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCTIWDIETGV  184 (364)
T ss_pred             ccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEEEEEEeecc
Confidence            7     3566653 3 49999998422 12111112     246679999999876655 89999999999999999973


Q ss_pred             e---eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCC--CCceEEEEEccC-CCEEEEEec
Q 001352          478 R---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAP--GLGCTRMAYSAN-GRRLFSCGT  550 (1093)
Q Consensus       478 ~---~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~--~~~v~~~~~s~d-~~~l~~~~~  550 (1093)
                      .   ...+-.|...|..++|.. +....+++.+.||.||+||++..+... .++.+  ..+...++|++. -+++++...
T Consensus       185 ~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~  263 (364)
T KOG0290|consen  185 SGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAM  263 (364)
T ss_pred             ccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhc
Confidence            3   456778999999999975 345789999999999999999866433 33333  346778888874 566766554


Q ss_pred             CCCCceeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce------EEEEecCCC
Q 001352          551 SKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQL------LTTIDAGGG  622 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~  622 (1093)
                      +   ...|.+.|++. ...+..+++|.   ..|+.++|.|.. ..|.+++.|..+.+||+...-.      +....   .
T Consensus       264 d---S~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a  334 (364)
T KOG0290|consen  264 D---SNKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT---A  334 (364)
T ss_pred             C---CceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh---c
Confidence            3   34588999886 45678888888   999999999975 5778899999999999975332      11111   2


Q ss_pred             CCCCceEEEec-CCCEEEEEECCCeEEEE
Q 001352          623 LPENPRICFNK-NGTLLAVIANENRIKIL  650 (1093)
Q Consensus       623 ~~~v~~v~~s~-~~~~l~~~~~dg~i~iw  650 (1093)
                      ...|+.+.|++ .+..++++.. +.+.+.
T Consensus       335 ~~EVNqi~Ws~~~~Dwiai~~~-kkleiL  362 (364)
T KOG0290|consen  335 GGEVNQIQWSSSQPDWIAICFG-KKLEIL  362 (364)
T ss_pred             cceeeeeeecccCCCEEEEEec-CeeeEE
Confidence            34689999996 5667777664 455543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.9e-15  Score=140.15  Aligned_cols=286  Identities=12%  Similarity=0.142  Sum_probs=197.2

Q ss_pred             ceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCC
Q 001352          737 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  816 (1093)
Q Consensus       737 ~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  816 (1093)
                      .|.+-+++|.+++++++..+|.+.+..+..-..   +...         ......+.    +..+|..++..++|.  ..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa~---------~~gk~~iv----~eqahdgpiy~~~f~--d~   73 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSAE---------PPGKLKIV----PEQAHDGPIYYLAFH--DD   73 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---cccC---------CCCCccee----eccccCCCeeeeeee--hh
Confidence            345567899999999999999999998764321   0000         01111111    123699999999997  56


Q ss_pred             EEEEEeCCeEEEEEccCcee------EEEEC-------CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec
Q 001352          817 YLFSASGGVISLYIVMTFKT------ILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  883 (1093)
Q Consensus       817 ~la~~~dg~i~iwd~~~~~~------~~~~~-------~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l  883 (1093)
                      +|++++||.|+-|.......      .....       ..-..|.++-+.|..+.+ +.++.|+.++-||+++|+....+
T Consensus        74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi-~~AgGD~~~y~~dlE~G~i~r~~  152 (325)
T KOG0649|consen   74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI-LFAGGDGVIYQVDLEDGRIQREY  152 (325)
T ss_pred             heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE-EEecCCeEEEEEEecCCEEEEEE
Confidence            78888899999998753221      11111       123578999999944544 45558999999999999999999


Q ss_pred             ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcc----cCCCCceEEEEccCCCEEEEEeCCe
Q 001352          884 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQTRFLLVHETH  959 (1093)
Q Consensus       884 ~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~dg~~l~~~~d~~  959 (1093)
                      +||++-|.+++--.....++||++||++||||..+++...  .+.......    ..+.+|  .+..-+..+|++|....
T Consensus       153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~  228 (325)
T KOG0649|consen  153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPK  228 (325)
T ss_pred             cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCcee--EEEeccCceEEecCCCc
Confidence            9999999999985555678999999999999999976444  222211111    111233  44556677899988889


Q ss_pred             EEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEe
Q 001352          960 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1039 (1093)
Q Consensus       960 i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1039 (1093)
                      +.+|.+.+.++...+.  -.+++..+.|-.|  .+++++..+.|.-|.+. |.+...+.      ..  ....++.+...
T Consensus       229 lslwhLrsse~t~vfp--ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~--s~~c~s~s~~~  295 (325)
T KOG0649|consen  229 LSLWHLRSSESTCVFP--IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIP------VE--STACYSASWQT  295 (325)
T ss_pred             eeEEeccCCCceEEEe--cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEecc------CC--ccceeeecccC
Confidence            9999999998887644  3567888888654  57778888899999885 44443332      11  12234444555


Q ss_pred             CCCCCCEEEEEeCCCcEEEEe
Q 001352         1040 HPLKPTQFAVGLTNGEVYVIE 1060 (1093)
Q Consensus      1040 ~p~d~~~l~~~~~dg~v~~w~ 1060 (1093)
                      +|  -+.+.+++-...+.++.
T Consensus       296 ~p--~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  296 SP--IKFISIAGFSNKLHILK  314 (325)
T ss_pred             Cc--eEEEEecccceeeeeee
Confidence            66  36777777778887764

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.74  E-value=2e-17  Score=156.44  Aligned_cols=249  Identities=19%  Similarity=0.225  Sum_probs=191.0

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeec-CCCCCeEEEEECC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNRVVWSP  407 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s~  407 (1093)
                      ..|++|.+.|+++.|-.+++  |.+|..-|.|++|++.+.+.+..                   +. .|...|+.+.--|
T Consensus         8 fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~~p   66 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQSIP   66 (323)
T ss_pred             eEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceeecC
Confidence            45778999999999999996  78899999999999998876643                   23 3677888888888


Q ss_pred             CCCEEEEEEcCCEEEEEEccCCCccc------------------------ceEEe-------------------------
Q 001352          408 DGSLLGVAYSKHIVQLYAYHGGSDAR------------------------QQLEI-------------------------  438 (1093)
Q Consensus       408 dg~~las~~~d~~i~iwd~~~~~~~~------------------------~~~~~-------------------------  438 (1093)
                      + ..|.+-+.|..+.+|++..+..+.                        +....                         
T Consensus        67 ~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~  145 (323)
T KOG0322|consen   67 N-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDS  145 (323)
T ss_pred             C-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCch
Confidence            7 566677889999999886522100                        00000                         


Q ss_pred             -ccccccEEEEEee-CCCCcEEEEEEcCCCcEEEEECCCCcee----------EEeecCCCCeEEeeecccCCccEEEEE
Q 001352          439 -DAHVGNVNDLAFS-APCKQISVITCGDDKTIKVWDAVTGSRT----------YSFEGHGAPVYSLCPHAKENIHFIFSI  506 (1093)
Q Consensus       439 -~~h~~~v~~~~~s-~d~~~l~l~s~~~d~~i~vwd~~~~~~~----------~~~~~h~~~v~~~~~~~~~~~~~l~s~  506 (1093)
                       .+..+.+.|..+. .++++++++.|..+|.+.+||+.++..+          .....|..+|.++.+.+.-+  .=++|
T Consensus       146 ~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~--rGisg  223 (323)
T KOG0322|consen  146 ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD--RGISG  223 (323)
T ss_pred             hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc--CCcCC
Confidence             0112345555532 3466668889999999999999998433          34456999999998865433  34677


Q ss_pred             ecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCe
Q 001352          507 SVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV  582 (1093)
Q Consensus       507 ~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v  582 (1093)
                      +.+..+..|.++....    ..........+..+.+-||++.+++++.    |++|++|+-++.+++..++.|.   ..|
T Consensus       224 ga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGW----D~RiRVyswrtl~pLAVLkyHs---agv  296 (323)
T KOG0322|consen  224 GADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGW----DHRIRVYSWRTLNPLAVLKYHS---AGV  296 (323)
T ss_pred             CccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeeccc----CCcEEEEEeccCCchhhhhhhh---cce
Confidence            7778888898875422    2234445567889999999999999998    6779999999999999999988   999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001352          583 SVVHFDTAKDQILAAGDDHVIKIWDM  608 (1093)
Q Consensus       583 ~~v~~~~~~~~l~~~~~dg~i~iwd~  608 (1093)
                      .+++|+|+.+.+++++.|++|.+|++
T Consensus       297 n~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  297 NAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             eEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999999986

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=1e-14  Score=160.76  Aligned_cols=198  Identities=12%  Similarity=0.144  Sum_probs=128.2

Q ss_pred             eEEEEccCCCEEEEEe--CCeEEEEEccC-c---eeEEEECCCCCCeEEEEEcCCCCCEEEE-EeCCCeEEEEEcCCcce
Q 001352          807 PCFALSKNDAYLFSAS--GGVISLYIVMT-F---KTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEV  879 (1093)
Q Consensus       807 ~~l~~s~dg~~la~~~--dg~i~iwd~~~-~---~~~~~~~~~~~~i~~l~~s~~d~~~las-g~~dg~i~iwd~~~~~~  879 (1093)
                      ..++++|+++++++++  ++.|.+|++.+ +   +.+..+. +.....+++++| +++++++ ...++.|.+||+.+...
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~  160 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGH  160 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCc
Confidence            3567777777777665  46777777753 2   1222222 223467789999 7777754 55669999999986332


Q ss_pred             ee-------ecccccCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCC--CceeeeeeeecCCCcccCCCCceEEEEccCC
Q 001352          880 IS-------KLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  949 (1093)
Q Consensus       880 ~~-------~l~~h~~~V~~l~~s~dg~~l~s~s~-dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg  949 (1093)
                      +.       .... ......++|+|||++++++.. +++|.+|+++.  ++......+...............+.|+|||
T Consensus       161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg  239 (330)
T PRK11028        161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG  239 (330)
T ss_pred             ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence            21       1111 234678999999999988776 89999999974  3322222222211111111134468999999


Q ss_pred             CEEEEE--eCCeEEEEEcCCcc----eeeeeecCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcC
Q 001352          950 TRFLLV--HETHLAIYEAEELT----CLKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEAS 1009 (1093)
Q Consensus       950 ~~l~~~--~d~~i~vwd~~~~~----~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~-dg~v~vwd~~ 1009 (1093)
                      ++++++  .++.|.+|++....    .+.....+  .....+.|+|||++|+++.. +++|.+|+++
T Consensus       240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            999986  45789999986433    22222221  24457899999999998775 8899999875

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=4.5e-17  Score=170.80  Aligned_cols=269  Identities=14%  Similarity=0.193  Sum_probs=190.9

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      .+|..|.+.|..++|.|... .|++++.||++.+|++.....-....           .-+...+.+|.++|.|++++++
T Consensus       288 ~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~-----------~epi~tfraH~gPVl~v~v~~n  355 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKD-----------VEPILTFRAHEGPVLCVVVPSN  355 (577)
T ss_pred             eeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccc-----------eeeeEEEecccCceEEEEecCC
Confidence            37788999999999999988 59999999999999994311111100           1112238899999999999999


Q ss_pred             CCEEEEEEcCCEEEEEEccCCC-------cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  481 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  481 (1093)
                      ++.+.+|+.||+|+.|++....       .......+.||.+.|+.+++|+...  .|++++.||+++.|+...... .+
T Consensus       356 ~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~  432 (577)
T KOG0642|consen  356 GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CT  432 (577)
T ss_pred             ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cc
Confidence            9999999999999999654211       1112235779999999999999888  699999999999999766655 34


Q ss_pred             eecCC--CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCceEEEEEccCCCEEEEEecCC
Q 001352          482 FEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       482 ~~~h~--~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      +....  +.-.++.+.... -...++...-+.--+.++........+...       ...+..+...|.+...+++..  
T Consensus       433 f~~~~e~g~Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he--  509 (577)
T KOG0642|consen  433 FGEPKEHGYPLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE--  509 (577)
T ss_pred             cCCccccCCcceEeeccch-hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc--
Confidence            43222  222233332111 011222222222223333333333332211       124667788888888888775  


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  620 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  620 (1093)
                        +..|+++|..++.++.....|.   ..+.++++.|+|.++++++.|+.+++|.+....++.....+
T Consensus       510 --d~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  510 --DRSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             --CCceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence              6779999999999999888887   89999999999999999999999999999877776555443

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=5.1e-16  Score=154.47  Aligned_cols=294  Identities=11%  Similarity=0.080  Sum_probs=207.9

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCC---CcccceEEe-ccccccEEEEEeeCCCCcEEEEEEcCCCcE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG---SDARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI  468 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~---~~~~~~~~~-~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  468 (1093)
                      +.+|.+.|.++.||.++++||+|+.|..+++|+++..   +..+++... ..|...|.|++|...+.  ++++|+.+++|
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~V  129 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGTV  129 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCccee
Confidence            6789999999999999999999999999999998632   111222122 23567999999998887  89999999999


Q ss_pred             EEEECCCCceeEEeec--CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEccCCC
Q 001352          469 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGR  543 (1093)
Q Consensus       469 ~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d~~  543 (1093)
                      ...|+++.+.+..+..  ..+.|+.+..+|..  ..+++.+.+|.|.+||.+....   .......+.....+.|+|...
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P  207 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP  207 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence            9999999999988752  23589999988773  5899999999999999986552   223333445678899999776


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCee-eee---eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 001352          544 RLFSCGTSKEGESFLVEWNESEGAI-KRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA  619 (1093)
Q Consensus       544 ~l~~~~~~~~~~~~i~iwd~~~~~~-~~~---~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  619 (1093)
                      .|+......   +-+.+||.+.... +..   +.+.......-.++.|+|+|+++++--....-.+||+-+.++......
T Consensus       208 ~Li~~~~~~---~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D  284 (609)
T KOG4227|consen  208 ALILVNSET---GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD  284 (609)
T ss_pred             eeEEecccc---CCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence            665544333   3388999875432 211   222221122346788999999999877666667888877554322222


Q ss_pred             CCC-----CCCCceEEEecCCCEEEEEECCCeEEEEEcCCC-----------------------ceeeecccccccceee
Q 001352          620 GGG-----LPENPRICFNKNGTLLAVIANENRIKILETPES-----------------------NSVDAAGVLSDNLRKL  671 (1093)
Q Consensus       620 ~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-----------------------~~~~~~~~~~~~i~~~  671 (1093)
                      |..     ...+.+++|-.|- .+++|+++=.|++|.+...                       ..+..+++|...++.+
T Consensus       285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV  363 (609)
T KOG4227|consen  285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV  363 (609)
T ss_pred             CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence            111     1235667776554 4999999999999998632                       1234455666666555


Q ss_pred             eecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecce
Q 001352          672 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP  716 (1093)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~  716 (1093)
                      .|+                      +...++.+.+-.+.+++|.-
T Consensus       364 RF~----------------------~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  364 RFS----------------------QHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             eec----------------------CCcceEeccchhhheecccc
Confidence            554                      55677788888899999973

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=1.2e-14  Score=145.01  Aligned_cols=242  Identities=11%  Similarity=0.147  Sum_probs=187.7

Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC
Q 001352          397 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  476 (1093)
Q Consensus       397 ~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  476 (1093)
                      ...+..+.|+.|...|..|+.|| -++|..+.-....   ........|..+-|+..=  +.+|+...-..+++.+.+.+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSSL--vaiV~~~qpr~Lkv~~~Kk~   78 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSSL--VAIVSIKQPRKLKVVHFKKK   78 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccce--eEEEecCCCceEEEEEcccC
Confidence            34577788999999999999999 7888887643211   222233356666676542  13344433345999999998


Q ss_pred             ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC---CCceEEEEEccCCCEEEEEecCCC
Q 001352          477 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---GLGCTRMAYSANGRRLFSCGTSKE  553 (1093)
Q Consensus       477 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~s~d~~~l~~~~~~~~  553 (1093)
                      ..+..+. ...+|.++.++.    +.|+++-.+. |.|||+++.+.+.++...   ...+.++++++.+.+++.-+... 
T Consensus        79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t-  151 (391)
T KOG2110|consen   79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT-  151 (391)
T ss_pred             ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-
Confidence            8888775 667788888743    4566666555 999999999888766544   33566666667777888765422 


Q ss_pred             CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352          554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  632 (1093)
                       .+.|++||..+-+.+..+..|.   +.+.+++|+++|..++++++.|+ |||+.+.+|+.+..+........|.+++|+
T Consensus       152 -~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs  227 (391)
T KOG2110|consen  152 -SGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS  227 (391)
T ss_pred             -CceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence             5669999999999999999888   99999999999999999999987 689999999999999876656678999999


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCC
Q 001352          633 KNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       633 ~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      |++.+|++.+..++|.++.+...
T Consensus       228 ~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  228 PDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             CCCCeEEEecCCCeEEEEEeccc
Confidence            99999999999999999998754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=2.3e-16  Score=155.25  Aligned_cols=292  Identities=13%  Similarity=0.173  Sum_probs=203.4

Q ss_pred             EEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCC-CceE
Q 001352          458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APG-LGCT  534 (1093)
Q Consensus       458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~-~~v~  534 (1093)
                      .++++-..|+|++||..+|+.+..++++...++.+.|........+.+++.||+|++||++.......+.  .+. .+..
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~  121 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI  121 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence            6788888999999999999999999999999999999875566789999999999999999877654433  333 3566


Q ss_pred             EEEEccCCCEEEEEecCCCCceeEEEEeCCCCee-eeeee-cccccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 001352          535 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQ-GLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV  611 (1093)
Q Consensus       535 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~-~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd~~~~  611 (1093)
                      +++..-.++.++++..-...+..|.+||.+..+. ++.+. .|.   +.|+++.|+|.. +.|++||.||-|.+||++..
T Consensus       122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~---DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN---DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc---CcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            7777668888888876666688899999998766 55543 344   899999999975 67888999999999999764


Q ss_pred             c----eEEEEecCCCCCCCceEEEecCC-CEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccC
Q 001352          612 Q----LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN  686 (1093)
Q Consensus       612 ~----~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  686 (1093)
                      .    ++.++..   ...|.++.|..++ +.+.+.+..+++.+|+++.+.....+.......... ..         -..
T Consensus       199 ~EeDaL~~viN~---~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~-r~---------~~~  265 (376)
T KOG1188|consen  199 NEEDALLHVINH---GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDL-RK---------EDN  265 (376)
T ss_pred             cchhhHHHhhcc---cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhH-Hh---------hhh
Confidence            2    2333332   2458889998876 458888899999999999876444333221100000 00         000


Q ss_pred             CceEecCCCCCCCccceeecc-cccceecceeeccCc-cccccccCccccccceEEEEeecCCceEEEeeccceeEEeee
Q 001352          687 GSVSVNEDPKEDVKPEISVEA-ENKSEVEKPLFARPS-ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  764 (1093)
Q Consensus       687 ~~~~~~~~~s~d~~~l~s~~~-d~~i~~w~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~  764 (1093)
                      ....++.....+....+.++. -+...++-+....+. ..........+|..-|.++.|...+..+.+++.||.+.+|..
T Consensus       266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            011112211233344444433 566666655432221 222333344457777888999989999999999999999985


Q ss_pred             c
Q 001352          765 P  765 (1093)
Q Consensus       765 ~  765 (1093)
                      +
T Consensus       346 ~  346 (376)
T KOG1188|consen  346 E  346 (376)
T ss_pred             C
Confidence            3

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=3.4e-15  Score=139.61  Aligned_cols=281  Identities=16%  Similarity=0.197  Sum_probs=193.7

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  416 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~  416 (1093)
                      .|.+-++||.+++ |+.|..+|+|.+..+++-..-...         .....+.....+|.++|..++|.  ..+|++|+
T Consensus        12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa~---------~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g   79 (325)
T KOG0649|consen   12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSAE---------PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG   79 (325)
T ss_pred             HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhccccC---------CCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence            6777789999985 899999999999988642111000         00011111247899999999998  55777775


Q ss_pred             cCCEEEEEEccCCCc---ccceEE--ecccc-----ccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC
Q 001352          417 SKHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  486 (1093)
Q Consensus       417 ~d~~i~iwd~~~~~~---~~~~~~--~~~h~-----~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~  486 (1093)
                       ||.|+=|.+.....   .+...+  ...|.     -.|+++...|..+  -+++++.|+.++-||+++|+..++++||+
T Consensus        80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt  156 (325)
T KOG0649|consen   80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT  156 (325)
T ss_pred             -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence             59999998864322   111101  11233     2588899998877  46666689999999999999999999999


Q ss_pred             CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC----------CceEEEEEccCCCEEEEEecCCCCce
Q 001352          487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG----------LGCTRMAYSANGRRLFSCGTSKEGES  556 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----------~~v~~~~~s~d~~~l~~~~~~~~~~~  556 (1093)
                      ..|.++.-..  ....+++|+.||++|+||.++.+....+..-.          ..|.+  ..-+..++++|+.     .
T Consensus       157 DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wiga--la~~edWlvCGgG-----p  227 (325)
T KOG0649|consen  157 DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGA--LAVNEDWLVCGGG-----P  227 (325)
T ss_pred             ceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEE--EeccCceEEecCC-----C
Confidence            9999998632  22479999999999999999988877554321          13444  4456778888763     3


Q ss_pred             eEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC-C
Q 001352          557 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-G  635 (1093)
Q Consensus       557 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~  635 (1093)
                      .+.+|++++.++..++.-.    .++..+.|..  ..++++++.+.|.-|.+. |.+...++...+  ...+..|+-. -
T Consensus       228 ~lslwhLrsse~t~vfpip----a~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~  298 (325)
T KOG0649|consen  228 KLSLWHLRSSESTCVFPIP----ARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPI  298 (325)
T ss_pred             ceeEEeccCCCceEEEecc----cceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCce
Confidence            4999999999988888763    4778888864  578888888889999874 444444443322  2444444432 2


Q ss_pred             CEEEEEECCCeEEEE
Q 001352          636 TLLAVIANENRIKIL  650 (1093)
Q Consensus       636 ~~l~~~~~dg~i~iw  650 (1093)
                      +++-.++..+.+.|+
T Consensus       299 k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  299 KFISIAGFSNKLHIL  313 (325)
T ss_pred             EEEEecccceeeeee
Confidence            344455556666654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.72  E-value=2.2e-17  Score=179.67  Aligned_cols=288  Identities=15%  Similarity=0.247  Sum_probs=226.3

Q ss_pred             eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCe
Q 001352          567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  646 (1093)
Q Consensus       567 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  646 (1093)
                      +.++.+.+|.   ..|+|+.|...|.++++|+.|..++||..+++.++....+|.+  .++.++.+.+..++++++.|..
T Consensus       181 k~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  181 KNIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKV  255 (1113)
T ss_pred             HHHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCce
Confidence            4455666776   8999999999999999999999999999999999999987754  6999999999999999999999


Q ss_pred             EEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccc
Q 001352          647 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  726 (1093)
Q Consensus       647 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~  726 (1093)
                      |++|.+..+.++..+++|.+.|++++|+|.                          .+.+.||++++||.... + ....
T Consensus       256 IrvWrl~~~~pvsvLrghtgavtaiafsP~--------------------------~sss~dgt~~~wd~r~~-~-~~y~  307 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPR--------------------------ASSSDDGTCRIWDARLE-P-RIYV  307 (1113)
T ss_pred             EEEEecCCCchHHHHhccccceeeeccCcc--------------------------ccCCCCCceEecccccc-c-cccC
Confidence            999999999999999999999999999873                          25677899999996611 0 0111


Q ss_pred             cccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCe
Q 001352          727 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  806 (1093)
Q Consensus       727 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  806 (1093)
                      -.-........+.++.|..++..+++++.++....|.++...               |                 +...+
T Consensus       308 prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~-----------------~~~~l  355 (1113)
T KOG0644|consen  308 PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------W-----------------RSNLL  355 (1113)
T ss_pred             CCCCCcccccceeeeeccccccccccccCCcccccchhhHhh---------------h-----------------hccce
Confidence            111112234567788888999999999999888887654321               1                 11222


Q ss_pred             eEEEEccCC-CEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec-
Q 001352          807 PCFALSKND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-  883 (1093)
Q Consensus       807 ~~l~~s~dg-~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l-  883 (1093)
                      .-+.++.|- .+.+++- +-.+++|++.+|...+.+.+|...+..+.++|.+.+...+++.||...|||+-.|..++.. 
T Consensus       356 if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~  435 (1113)
T KOG0644|consen  356 IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF  435 (1113)
T ss_pred             EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence            222222222 3334443 5779999999999999999999999999999988888889999999999999988776554 


Q ss_pred             ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001352          884 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  920 (1093)
Q Consensus       884 ~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~  920 (1093)
                      .+| +.+..-+||+||+.++....-|.+.|.....++
T Consensus       436 ~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  436 IGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             ccc-ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            455 557778999999999998888999998775543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.72  E-value=8.2e-16  Score=147.46  Aligned_cols=260  Identities=17%  Similarity=0.230  Sum_probs=185.2

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccC-------CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  401 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  401 (1093)
                      .+|..|.++|+.++-+|-.+++|+++..+       -.+.||.+........  ...|+   |    -..+-..+-+.|.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~tlE---~----v~~Ldteavg~i~  127 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SSTLE---C----VASLDTEAVGKIN  127 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cchhh---H----hhcCCHHHhCcee
Confidence            45667889999999999988899987653       2367887754221100  00000   0    0011124556999


Q ss_pred             EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEE---eccccccEEEEEeeC--CCCcEEEEEEcCCCcEEEEECCCC
Q 001352          402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE---IDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTG  476 (1093)
Q Consensus       402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~  476 (1093)
                      |+.|.|++..||+-. |..|.+|++..+..+.....   -.+|....++-+|+|  ||.  .+++.+ |+++..||+++.
T Consensus       128 cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~  203 (370)
T KOG1007|consen  128 CVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTM  203 (370)
T ss_pred             eEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccch
Confidence            999999999999876 77799999998765321111   123566788999999  565  455554 899999999998


Q ss_pred             ceeEEe-ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCceEEEEEccCCCEEE-EEecCCC
Q 001352          477 SRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLF-SCGTSKE  553 (1093)
Q Consensus       477 ~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~-~~~~~~~  553 (1093)
                      ++...+ ..|...|..+.|+|.. ..+|++++.||.|++||.+..+ .+..+.+|...+.++.|+|.-..|+ +++.   
T Consensus       204 ~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S---  279 (370)
T KOG1007|consen  204 KKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS---  279 (370)
T ss_pred             hhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC---
Confidence            888777 4688999999998764 3689999999999999998755 4668889999999999999765554 4443   


Q ss_pred             CceeEEEEeCCCCe-----------------------------eeeeeecccccCCCeEEEEEcCCCCEEEE-EeCCCcE
Q 001352          554 GESFLVEWNESEGA-----------------------------IKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVI  603 (1093)
Q Consensus       554 ~~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i  603 (1093)
                       +..|.+|...+-.                             .+.++..|   ++.|++++|+....++++ -+.||.+
T Consensus       280 -Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh---EDSVY~~aWSsadPWiFASLSYDGRv  355 (370)
T KOG1007|consen  280 -DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH---EDSVYALAWSSADPWIFASLSYDGRV  355 (370)
T ss_pred             -CceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc---ccceEEEeeccCCCeeEEEeccCceE
Confidence             5668777543211                             12234444   489999999988887765 7899998


Q ss_pred             EEEECC
Q 001352          604 KIWDMN  609 (1093)
Q Consensus       604 ~iwd~~  609 (1093)
                      .|=.+.
T Consensus       356 iIs~V~  361 (370)
T KOG1007|consen  356 IISSVP  361 (370)
T ss_pred             EeecCC
Confidence            876543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.72  E-value=1.3e-15  Score=146.08  Aligned_cols=182  Identities=18%  Similarity=0.240  Sum_probs=129.3

Q ss_pred             eeEEEEcc--CCCEEEEEeCCeEEEEEccCceeEEEEC-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-ceee
Q 001352          806 VPCFALSK--NDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVIS  881 (1093)
Q Consensus       806 v~~l~~s~--dg~~la~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~-~~~~  881 (1093)
                      .++-+|||  ||..+++.++++++.||+.+-+....+. +|...+..+.|.|+...+||+++.||.|+|||.+.. ..+.
T Consensus       173 ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~  252 (370)
T KOG1007|consen  173 FTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ  252 (370)
T ss_pred             ecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence            34445666  8899999999999999999887766664 577889999999966778999999999999999864 5788


Q ss_pred             ecccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCe
Q 001352          882 KLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH  959 (1093)
Q Consensus       882 ~l~~h~~~V~~l~~s~d-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~  959 (1093)
                      .+.+|+..|+++.|.|. .++++++|.|..|.+|....-.-..                  .+.|-.|..-.-. ....+
T Consensus       253 el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~------------------qi~~~~dese~e~~dseer  314 (370)
T KOG1007|consen  253 ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ------------------QIEFEDDESESEDEDSEER  314 (370)
T ss_pred             ccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc------------------ccccccccccCcchhhHHh
Confidence            99999999999999985 4678899999999999876522111                  1111111100000 00011


Q ss_pred             EEEEEcCCcceeeeeecCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcC
Q 001352          960 LAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus       960 i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~-~l~t~~~dg~v~vwd~~ 1009 (1093)
                      ++  -+.+|. +. .+..|...|.+++||.-.- .+|+-+.||++.|=.++
T Consensus       315 ~k--pL~dg~-l~-tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  315 VK--PLQDGQ-LE-TYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cc--cccccc-cc-cccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            11  111221 11 2556889999999987554 46788899998886654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.72  E-value=1.7e-16  Score=150.25  Aligned_cols=290  Identities=15%  Similarity=0.117  Sum_probs=199.2

Q ss_pred             eecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEec-cccccEEEEEeeCCCCcEEEEEEcCCCcEEE
Q 001352          392 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKV  470 (1093)
Q Consensus       392 ~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  470 (1093)
                      ++.+|.+.|+++.|-.+++ |.+|...|.|++|++.+...+.   .++ .|...|+.+.-.|++.   +.+-+.|+.+.+
T Consensus         9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~l   81 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLIL   81 (323)
T ss_pred             Eeccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEEE
Confidence            3778999999999988776 8899999999999999976544   455 4777899999999865   899999999999


Q ss_pred             EECCCCceeEEeecCCCCeEEeeecccC---C----ccEEEEEecCCe-EEEEEcCCCCceEEecC----CCCceEEEEE
Q 001352          471 WDAVTGSRTYSFEGHGAPVYSLCPHAKE---N----IHFIFSISVDGK-IKAWLYDSLGARVDYDA----PGLGCTRMAY  538 (1093)
Q Consensus       471 wd~~~~~~~~~~~~h~~~v~~~~~~~~~---~----~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~----~~~~v~~~~~  538 (1093)
                      |++.-+..+.   .|.-.++++-|.+..   +    .+.++.-+.... +++-|............    ..+.+++..+
T Consensus        82 w~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~  158 (323)
T KOG0322|consen   82 WTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK  158 (323)
T ss_pred             EEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence            9988765443   233344444443211   0    011111111000 22222222222222211    2234555553


Q ss_pred             cc-CCC-EEEEEecCCCCceeEEEEeCCCCeeeeeeec-------ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001352          539 SA-NGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  609 (1093)
Q Consensus       539 s~-d~~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~  609 (1093)
                      .. ++. .++.++.   +.+.+.+||+.++..+-.+..       ...|..+|.++.+.+.-..=++|+.+..+..|+++
T Consensus       159 ~~~c~s~~lllaGy---Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~  235 (323)
T KOG0322|consen  159 DHACGSTFLLLAGY---ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLN  235 (323)
T ss_pred             cccccceEEEEEec---cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeec
Confidence            22 333 3344432   367799999999844322221       11234889999999877777888888899999876


Q ss_pred             C--CceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCC
Q 001352          610 K--VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  687 (1093)
Q Consensus       610 ~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  687 (1093)
                      .  +.+.......-..+.+..+..-||++.+|+++.|+.|++|..++.+++..++.|...+++++|+             
T Consensus       236 ~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs-------------  302 (323)
T KOG0322|consen  236 HSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS-------------  302 (323)
T ss_pred             cccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeC-------------
Confidence            4  3332221111223568999999999999999999999999999999999999999999999997             


Q ss_pred             ceEecCCCCCCCccceeecccccceecce
Q 001352          688 SVSVNEDPKEDVKPEISVEAENKSEVEKP  716 (1093)
Q Consensus       688 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~  716 (1093)
                               |+...++.++.|+.|.+|++
T Consensus       303 ---------pd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  303 ---------PDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ---------CCCchhhhccCCceEEeeec
Confidence                     66778999999999999985

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=6.8e-15  Score=146.77  Aligned_cols=242  Identities=11%  Similarity=0.167  Sum_probs=182.5

Q ss_pred             CCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCcce
Q 001352          802 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEV  879 (1093)
Q Consensus       802 ~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~i~iwd~~~~~~  879 (1093)
                      ....+..+.|..|...|..|+....++|..+..............|..+-|+.   .++|..+.+.  .+++++++.+..
T Consensus         4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~   80 (391)
T KOG2110|consen    4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTT   80 (391)
T ss_pred             CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCce
Confidence            34456677799999999999877778888775544323333344677777875   3666655543  699999998877


Q ss_pred             eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-E--e
Q 001352          880 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--H  956 (1093)
Q Consensus       880 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~--~  956 (1093)
                      +..+. ...+|.++.+.  .++|+++=.+. |.|||+++-+     .+...........++.++++++.+.+||. +  .
T Consensus        81 ICe~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mk-----lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t  151 (391)
T KOG2110|consen   81 ICEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMK-----LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT  151 (391)
T ss_pred             EEEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccce-----eehhhhccCCCccceEeeccCCCCceEEecCCCC
Confidence            77665 55679999986  45666665555 9999999843     44444433222235677777777889998 3  5


Q ss_pred             CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCc-EEEEEcCCCceEEEeccccccCCCCCCCcccee
Q 001352          957 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1035 (1093)
Q Consensus       957 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1035 (1093)
                      .|.|.|||+.+.+.+..+ ..|.+.+.+++|++||.+|||+|..|+ |||+.+.+|+.+.+|+.... +       +...
T Consensus       152 ~GdV~l~d~~nl~~v~~I-~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~Iy  222 (391)
T KOG2110|consen  152 SGDVVLFDTINLQPVNTI-NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIY  222 (391)
T ss_pred             CceEEEEEcccceeeeEE-EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEE
Confidence            689999999999888874 489999999999999999999999997 79999999999999984443 2       3345


Q ss_pred             EEEeCCCCCCEEEEEeCCCcEEEEecCCCC
Q 001352         1036 AIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1065 (1093)
Q Consensus      1036 ~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1065 (1093)
                      +++|+| |+++|++.+..++|++|.+....
T Consensus       223 SL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  223 SLSFSP-DSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence            789999 68999999999999999996543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=6.2e-16  Score=152.25  Aligned_cols=275  Identities=15%  Similarity=0.174  Sum_probs=192.1

Q ss_pred             EEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC--CCCEEEEEEcCCEEEEEEcc
Q 001352          350 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYH  427 (1093)
Q Consensus       350 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--dg~~las~~~d~~i~iwd~~  427 (1093)
                      .+|++-..|+|++||..+|+.+..                   +.+|...+..++|..  ....+.+|+.||+|++||+.
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R  102 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR  102 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence            588888899999999999988876                   667888888899887  46789999999999999999


Q ss_pred             CCCcccceEEecccc-ccEEEEEeeCCCCcEEEEEEc----CCCcEEEEECCCCce-eEEe-ecCCCCeEEeeecccCCc
Q 001352          428 GGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG----DDKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKENI  500 (1093)
Q Consensus       428 ~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~----~d~~i~vwd~~~~~~-~~~~-~~h~~~v~~~~~~~~~~~  500 (1093)
                      +......+ ...+|. .+..+++..-.++  .+++|.    .|-.|.+||++..+. +..+ ..|...|++++|+|+. .
T Consensus       103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~-p  178 (376)
T KOG1188|consen  103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD-P  178 (376)
T ss_pred             cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC-C
Confidence            87654433 455666 4666777665565  566664    366799999998776 5544 6799999999999874 4


Q ss_pred             cEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc
Q 001352          501 HFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  576 (1093)
Q Consensus       501 ~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  576 (1093)
                      .+|++||.||-|.+||+......   ...-.+...|..+.|..++ +.+.+.+.    .....+|+++.+.....+....
T Consensus       179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~  254 (376)
T KOG1188|consen  179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD  254 (376)
T ss_pred             CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence            79999999999999999765332   2233355678999999888 23444443    4458999999887655444331


Q ss_pred             cc---------CCCeEEEEEcC-CCCEEEE-EeCCCcEEEEECC---CCce---EEEEecCCCCCCCceEEEecCCCEEE
Q 001352          577 LQ---------HNSVSVVHFDT-AKDQILA-AGDDHVIKIWDMN---KVQL---LTTIDAGGGLPENPRICFNKNGTLLA  639 (1093)
Q Consensus       577 ~~---------~~~v~~v~~~~-~~~~l~~-~~~dg~i~iwd~~---~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~  639 (1093)
                      ..         ...+... .+| +....+. |+.-|...++-+.   ++..   +..+.+ ++..-|+++.|...+..+.
T Consensus       255 ~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~  332 (376)
T KOG1188|consen  255 VSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLY  332 (376)
T ss_pred             chhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceee
Confidence            00         0011111 123 2334444 3335566555443   3332   233332 2344578889998999999


Q ss_pred             EEECCCeEEEEEcC
Q 001352          640 VIANENRIKILETP  653 (1093)
Q Consensus       640 ~~~~dg~i~iw~~~  653 (1093)
                      +|+.||.+.+|...
T Consensus       333 TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  333 TGGEDGLLQAWKVE  346 (376)
T ss_pred             ccCCCceEEEEecC
Confidence            99999999999964

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.71  E-value=2.5e-14  Score=157.75  Aligned_cols=275  Identities=14%  Similarity=0.194  Sum_probs=178.5

Q ss_pred             eEEEEEccCCcEEEEecCC-CceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE-cCCEEEEEEc
Q 001352          349 TLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY  426 (1093)
Q Consensus       349 ~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~-~d~~i~iwd~  426 (1093)
                      +++++...++.|.+||+.+ |+......                 + .+.+....++++||+++|++++ .++.|.+|++
T Consensus         3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~   64 (330)
T PRK11028          3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI   64 (330)
T ss_pred             EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence            3455557789999999974 43222111                 1 1345677899999999987764 5778999999


Q ss_pred             cCCCcccceEEeccccccEEEEEeeCCCCcEEEEEE-cCCCcEEEEECCC-Cc---eeEEeecCCCCeEEeeecccCCcc
Q 001352          427 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVT-GS---RTYSFEGHGAPVYSLCPHAKENIH  501 (1093)
Q Consensus       427 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~-~~d~~i~vwd~~~-~~---~~~~~~~h~~~v~~~~~~~~~~~~  501 (1093)
                      .....+...... ...+....++|+|+++.  ++++ ..++.|.+|++.+ +.   .+..+.+ ......++++  ++++
T Consensus        65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~--p~g~  138 (330)
T PRK11028         65 ADDGALTFAAES-PLPGSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANID--PDNR  138 (330)
T ss_pred             CCCCceEEeeee-cCCCCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeC--CCCC
Confidence            732222222122 23345678999999994  4444 4588999999864 32   2333332 2335566674  4666


Q ss_pred             EEE-EEecCCeEEEEEcCCCCceEE-----e-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC--Ce--eee
Q 001352          502 FIF-SISVDGKIKAWLYDSLGARVD-----Y-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GA--IKR  570 (1093)
Q Consensus       502 ~l~-s~~~dg~i~vwd~~~~~~~~~-----~-~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~--~~~  570 (1093)
                      +++ +...++.|.+||+++......     . ...+.....++|+|+|++++++..   .++.|.+|++..  ++  .+.
T Consensus       139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~  215 (330)
T PRK11028        139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ  215 (330)
T ss_pred             EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence            665 555679999999986432211     1 112345678999999999988764   356799999873  32  233


Q ss_pred             eeecccc---cCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc----eEEEEecCCCCCCCceEEEecCCCEEEEEE
Q 001352          571 TYQGLQL---QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIA  642 (1093)
Q Consensus       571 ~~~~~~~---~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  642 (1093)
                      .+.....   .......+.++|++++++++. .++.|.+|++....    .+......   .....++++|+|++|+++.
T Consensus       216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~  292 (330)
T PRK11028        216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG  292 (330)
T ss_pred             EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence            3322110   111234688999999999975 47899999986533    22222221   2356799999999999887


Q ss_pred             C-CCeEEEEEcC
Q 001352          643 N-ENRIKILETP  653 (1093)
Q Consensus       643 ~-dg~i~iw~~~  653 (1093)
                      . +++|.+|++.
T Consensus       293 ~~~~~v~v~~~~  304 (330)
T PRK11028        293 QKSHHISVYEID  304 (330)
T ss_pred             ccCCcEEEEEEc
Confidence            6 8999999875

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=3.9e-16  Score=158.72  Aligned_cols=199  Identities=17%  Similarity=0.196  Sum_probs=164.3

Q ss_pred             eEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeeccc
Q 001352          807 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG  885 (1093)
Q Consensus       807 ~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~  885 (1093)
                      .+++|+++|..++++. ||++|||++.+...+.....|..+|.++.||| |+++|++-+.| ..+||+..+|..+.....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            7899999999999997 89999999988888888888999999999999 99999999999 899999999977766553


Q ss_pred             --ccCCeEEEEEeCCC-----CEEEEEeCCCcEEEEeCCCCceeee-eeeecCCCcccCCCCceEEEEccCCCEEEE-Ee
Q 001352          886 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH  956 (1093)
Q Consensus       886 --h~~~V~~l~~s~dg-----~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~  956 (1093)
                        -......+.|+.|+     ..++....-+.|+.|++..+..... +..+....+.    .|++++.|+||+++|. +.
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~----siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK----SISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC----cceeEEEcCCCcEEEEecc
Confidence              23346678899887     4445555567788888876543211 1122222222    5999999999999999 58


Q ss_pred             CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001352          957 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus       957 d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
                      ||.|.|+++.+.+++......|..-|+.+.|+||.+++++.+.|....|..+.-.
T Consensus       302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence            9999999999999998888899999999999999999999999999999888763

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=1.7e-14  Score=161.66  Aligned_cols=302  Identities=17%  Similarity=0.202  Sum_probs=206.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-CCCCCceEEEec--CCCEEEEEECCCeEEEEEcCCCce
Q 001352          581 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNK--NGTLLAVIANENRIKILETPESNS  657 (1093)
Q Consensus       581 ~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~~~  657 (1093)
                      ....+.|+|-...++++.+.-.|+|||.+.++.+..+..+. ....|..+.+-.  |..++.+++.||.|+||+-.....
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            45678899999999999988899999999999988876542 223466666654  556788888888888887442200


Q ss_pred             eeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccc
Q 001352          658 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK  737 (1093)
Q Consensus       658 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  737 (1093)
                                                              +...++++                                
T Consensus      1146 ----------------------------------------~~~eLVTa-------------------------------- 1153 (1387)
T KOG1517|consen 1146 ----------------------------------------KKPELVTA-------------------------------- 1153 (1387)
T ss_pred             ----------------------------------------CCceeEEe--------------------------------
Confidence                                                    00011111                                


Q ss_pred             eEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccC-CC
Q 001352          738 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DA  816 (1093)
Q Consensus       738 i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~  816 (1093)
                           |++-...+.+....|                                                 .-+.|-.. |.
T Consensus      1154 -----w~~Ls~~~~~~r~~~-------------------------------------------------~v~dWqQ~~G~ 1179 (1387)
T KOG1517|consen 1154 -----WSSLSDQLPGARGTG-------------------------------------------------LVVDWQQQSGH 1179 (1387)
T ss_pred             -----eccccccCccCCCCC-------------------------------------------------eeeehhhhCCe
Confidence                 000000000000011                                                 11233333 34


Q ss_pred             EEEEEeCCeEEEEEccCceeEEEECC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---ceeeecccccCC--e
Q 001352          817 YLFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR--V  890 (1093)
Q Consensus       817 ~la~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~---~~~~~l~~h~~~--V  890 (1093)
                      ++++|.-..|+|||.......+.+.. ....++++.-+...|..+++|..||.|++||.+..   ..+...+.|+..  |
T Consensus      1180 Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~I 1259 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPI 1259 (1387)
T ss_pred             EEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccc
Confidence            44444447899999988777776653 44577888776657899999999999999998754   356777889887  9


Q ss_pred             EEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcc
Q 001352          891 TGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT  969 (1093)
Q Consensus       891 ~~l~~s~dg~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~  969 (1093)
                      ..+.+-+.|- .|++|+.||.|++||+..........+.   .+...+...+++..+++...+|+|+.+.|+||++.. +
T Consensus      1260 v~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv---~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G-~ 1335 (1387)
T KOG1517|consen 1260 VHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV---AHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG-E 1335 (1387)
T ss_pred             eeEEeecCCCcceeeeccCCeEEEEecccCcccccceee---eccccCccceeeeeccCCCeeeecCcceEEEEecCh-h
Confidence            9999988764 4999999999999999874322211111   111112348999999999999998779999999864 3


Q ss_pred             eeeeee------cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001352          970 CLKQWF------PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1012 (1093)
Q Consensus       970 ~~~~~~------~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~ 1012 (1093)
                      .+..+.      ....+.+.+++|.|.--+||+|+.|.+|.||......
T Consensus      1336 ~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1336 QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            332211      1125678999999999999999999999999887654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.66  E-value=4.2e-14  Score=161.37  Aligned_cols=255  Identities=13%  Similarity=0.098  Sum_probs=182.2

Q ss_pred             ecCCCCCeEEEEECCCC-CEEEEEEcCCEEEEEEccCC----CcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCc
Q 001352          393 VRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT  467 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg-~~las~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~  467 (1093)
                      +..|...|..++.+++. .++++||.||+|++|+...-    ...+...++.....++.++.+.+.+.  .+|.++.||.
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence            66799999999988755 99999999999999998632    22333334444567899999999999  6888899999


Q ss_pred             EEEEECCC--Cce-----eEEeec-CCCCeEEee-ecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEE
Q 001352          468 IKVWDAVT--GSR-----TYSFEG-HGAPVYSLC-PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRM  536 (1093)
Q Consensus       468 i~vwd~~~--~~~-----~~~~~~-h~~~v~~~~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~  536 (1093)
                      |++.+++.  .+.     .+.... ..+.+.++. +........++.+..-+.|..||.+.......  .....+-|+++
T Consensus      1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred             EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence            99999876  221     111122 223444443 32222223788899999999999988776554  34456689999


Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC---CCEEEEE-e-CCCcEEEEECCCC
Q 001352          537 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILAA-G-DDHVIKIWDMNKV  611 (1093)
Q Consensus       537 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~-~-~dg~i~iwd~~~~  611 (1093)
                      +.+|-+.+++.|+.    .|.+.+||++=+.++.......  ..++..+..+|-   ....+++ + ..+.|.+|++.+|
T Consensus      1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence            99999999999986    6779999999988888776544  356777766654   3455554 4 5788999999999


Q ss_pred             ceEEEEecCCCC-----------------CCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352          612 QLLTTIDAGGGL-----------------PENPRICFNKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       612 ~~~~~~~~~~~~-----------------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      .+...+......                 ......++...+..+.+|+.|..|+.||....
T Consensus      1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence            877766443110                 01122333344668899999999999998865

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.1e-14  Score=165.37  Aligned_cols=235  Identities=13%  Similarity=0.118  Sum_probs=162.4

Q ss_pred             CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC---CEEEEEEccCCCccc
Q 001352          357 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDAR  433 (1093)
Q Consensus       357 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d---~~i~iwd~~~~~~~~  433 (1093)
                      +..|.+||....... .                   +..|...+.+.+|||||++||+++.+   ..|++||+.+++...
T Consensus       183 ~~~i~i~d~dg~~~~-~-------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~  242 (429)
T PRK01742        183 PYEVRVADYDGFNQF-I-------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV  242 (429)
T ss_pred             eEEEEEECCCCCCce-E-------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence            468999998765432 1                   55688899999999999999988654   479999998875321


Q ss_pred             ceEEeccccccEEEEEeeCCCCcEEEEE-EcCCCcEEEE--ECCCCceeEEeecCCCCeEEeeecccCCccEEEEEe-cC
Q 001352          434 QQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VD  509 (1093)
Q Consensus       434 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s-~~~d~~i~vw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d  509 (1093)
                       +..+.+|   ...++|+|||+  .|+. .+.+|.+.||  |+.+++ +..+..+...+....|++  ||..|+..+ .+
T Consensus       243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~  313 (429)
T PRK01742        243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS  313 (429)
T ss_pred             -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence             2233344   34689999999  4554 4567766555  666665 455666777777788854  666666554 67


Q ss_pred             CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC
Q 001352          510 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  589 (1093)
Q Consensus       510 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~  589 (1093)
                      |...+|+++..........+..  ....|+|||++++..+.     ..+.+||+.+++........     ....+.|+|
T Consensus       314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sP  381 (429)
T PRK01742        314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF-----LDESPSISP  381 (429)
T ss_pred             CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC-----CCCCceECC
Confidence            8889998765433222222222  45789999999988764     23777999988765333222     234578999


Q ss_pred             CCCEEEEEeCCCcEEEEEC--CCCceEEEEecCCCCCCCceEEEecC
Q 001352          590 AKDQILAAGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNKN  634 (1093)
Q Consensus       590 ~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~  634 (1093)
                      +|++++.++.++...+|++  .+|+....+..+.  ..+...+|+|-
T Consensus       382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~  426 (429)
T PRK01742        382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY  426 (429)
T ss_pred             CCCEEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence            9999999999998888875  3577777776443  34778889874

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=2.9e-13  Score=145.29  Aligned_cols=509  Identities=12%  Similarity=0.140  Sum_probs=306.5

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCc------------ccceEEeccccccEEEEEeeCCCCcEEEEEEc
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG  463 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~------------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~  463 (1093)
                      ......|++|+....|+|+|+.||.++|-.+.+...            +....++.||.+.|.-+.|+.+.+  .|-|..
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD   90 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD   90 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence            456789999999999999999999999998875432            112235789999999999999888  689999


Q ss_pred             CCCcEEEEECCCCceeEEe--ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC
Q 001352          464 DDKTIKVWDAVTGSRTYSF--EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN  541 (1093)
Q Consensus       464 ~d~~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  541 (1093)
                      .+|.|.||-+-.|.....+  ....+.|.+++|  ..||..+.....||.|.+=.++.. .+.--...+.....+.|++|
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGN-RIwgKeLkg~~l~hv~ws~D  167 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGN-RIWGKELKGQLLAHVLWSED  167 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccc-eecchhcchheccceeeccc
Confidence            9999999998888655433  234566888888  557788888888988877655432 22222222334457889999


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCCCe-------eeeeeec-ccccCCCeEEEEEc--------CCCCEEEEEeCCCcEEE
Q 001352          542 GRRLFSCGTSKEGESFLVEWNESEGA-------IKRTYQG-LQLQHNSVSVVHFD--------TAKDQILAAGDDHVIKI  605 (1093)
Q Consensus       542 ~~~l~~~~~~~~~~~~i~iwd~~~~~-------~~~~~~~-~~~~~~~v~~v~~~--------~~~~~l~~~~~dg~i~i  605 (1093)
                      .+.++.+-.    .+.+.++|.+..-       +.....+ .......+..+.|.        |+...++++-.+|.+.|
T Consensus       168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi  243 (1189)
T KOG2041|consen  168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI  243 (1189)
T ss_pred             HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence            998877654    4458888865321       1001111 01011224444443        57789999999999988


Q ss_pred             EECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC---------eEEEEEcCCCceeeecccccccceeeeecCC
Q 001352          606 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN---------RIKILETPESNSVDAAGVLSDNLRKLSVNPI  676 (1093)
Q Consensus       606 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---------~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~  676 (1093)
                      -.-.+......+...   ..+....|+++|..|++++.+.         .|.+|.. -+..+.+++.+.           
T Consensus       244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg-----------  308 (1189)
T KOG2041|consen  244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPG-----------  308 (1189)
T ss_pred             hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCC-----------
Confidence            765554433333322   2467889999999999998753         1222211 112222222222           


Q ss_pred             CceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecc
Q 001352          677 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN  756 (1093)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  756 (1093)
                                                                                 ..|+++.|-..|-.++. +-|
T Consensus       309 -----------------------------------------------------------~~It~lsWEg~gLriA~-Avd  328 (1189)
T KOG2041|consen  309 -----------------------------------------------------------SCITGLSWEGTGLRIAI-AVD  328 (1189)
T ss_pred             -----------------------------------------------------------ceeeeeEEcCCceEEEE-Eec
Confidence                                                                       34445555444433322 223


Q ss_pred             ceeEEeeecCccc----------CcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCe
Q 001352          757 GVHLMWRWPRNDL----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV  825 (1093)
Q Consensus       757 g~v~vw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~  825 (1093)
                      +.+.+=++..+-.          ...+.......+..||..+.+....       .-....++++..+.-.|+.-. ++.
T Consensus       329 sfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~  401 (1189)
T KOG2041|consen  329 SFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGV  401 (1189)
T ss_pred             ceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCC
Confidence            3333322221110          0111112223456677776663332       223456777777666665554 465


Q ss_pred             EEEEE-ccCceeEEEEC----------CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce---------------
Q 001352          826 ISLYI-VMTFKTILTIM----------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---------------  879 (1093)
Q Consensus       826 i~iwd-~~~~~~~~~~~----------~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~---------------  879 (1093)
                      +.-++ +++...+..+.          ..-..|.-.-..- ++..++.++.+ .+.+|.....+.               
T Consensus       402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~  479 (1189)
T KOG2041|consen  402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRF  479 (1189)
T ss_pred             CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccc
Confidence            55442 22222111111          0011222222222 56677777766 477887643211               


Q ss_pred             -----------------eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceE
Q 001352          880 -----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH  942 (1093)
Q Consensus       880 -----------------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  942 (1093)
                                       ..++.|..++|.+++.|  .++|..+-..|.|.-+.+.+....     +...-.    ..+.+
T Consensus       480 h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~-----n~y~~n----~~~y~  548 (1189)
T KOG2041|consen  480 HGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLT-----NSYPVN----PSIYS  548 (1189)
T ss_pred             cCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeee-----eccccC----chhee
Confidence                             13445666788888886  578899999999999999884322     222111    35889


Q ss_pred             EEEccCCCEEEE-EeCCeEEEEEcC---CcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001352          943 IQFHKDQTRFLL-VHETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1008 (1093)
Q Consensus       943 ~~~s~dg~~l~~-~~d~~i~vwd~~---~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~ 1008 (1093)
                      ++.+.+...+|+ ---|.+.+.|+.   +|..+.-+.......|+.+.|..|...|++--....+.|++-
T Consensus       549 ~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrg  618 (1189)
T KOG2041|consen  549 IKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRG  618 (1189)
T ss_pred             EeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecC
Confidence            999999998887 456777777665   455555455555778899999888776665555555666643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=3.9e-14  Score=158.83  Aligned_cols=298  Identities=14%  Similarity=0.191  Sum_probs=208.4

Q ss_pred             ccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC--CC
Q 001352          332 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG  409 (1093)
Q Consensus       332 ~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--dg  409 (1093)
                      .+.......+.|+|-... ++++...-.|+|||.+.++.+..+.-                -......|+.+.+-.  |.
T Consensus      1061 ~~n~~~pk~~~~hpf~p~-i~~ad~r~~i~vwd~e~~~~l~~F~n----------------~~~~~t~Vs~l~liNe~D~ 1123 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQ-IAAADDRERIRVWDWEKGRLLNGFDN----------------GAFPDTRVSDLELINEQDD 1123 (1387)
T ss_pred             hcCCCCCceeeecCCCce-eEEcCCcceEEEEecccCceeccccC----------------CCCCCCccceeeeecccch
Confidence            344445677889998874 67766667899999999988754221                012345788888865  56


Q ss_pred             CEEEEEEcCCEEEEEEccCC--Cc---ccceEEecccc----ccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE
Q 001352          410 SLLGVAYSKHIVQLYAYHGG--SD---ARQQLEIDAHV----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  480 (1093)
Q Consensus       410 ~~las~~~d~~i~iwd~~~~--~~---~~~~~~~~~h~----~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  480 (1093)
                      .+|.+|+.||.|+||+-.-.  +.   +.....+.++.    +.=.-++|-....  .|+++|.-..|+|||.....+.+
T Consensus      1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred             hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEe
Confidence            78999999999999974322  11   11111122221    1113457777666  56666668899999999988888


Q ss_pred             Eeec-CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCc--eEEEEEccCCCE-EEEEecCCC
Q 001352          481 SFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLG--CTRMAYSANGRR-LFSCGTSKE  553 (1093)
Q Consensus       481 ~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~--v~~~~~s~d~~~-l~~~~~~~~  553 (1093)
                      .+.. ....|+++.-.-. .|..+++|..||.|++||.+....   +.....|...  |..+.+-+.|-. |++++.   
T Consensus      1202 diP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~--- 1277 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ--- 1277 (1387)
T ss_pred             ecccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc---
Confidence            7753 4456777765433 378999999999999999986544   4455666665  999999887765 888876   


Q ss_pred             CceeEEEEeCCCCeeeeeee--cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-----CCCCCC
Q 001352          554 GESFLVEWNESEGAIKRTYQ--GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPEN  626 (1093)
Q Consensus       554 ~~~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v  626 (1093)
                       +|.|++||++.......+.  .|..-+..++++..++....+++|+. +.|.||++...+ +..+...     .....+
T Consensus      1278 -~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1278 -DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred             -CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCc
Confidence             5569999998752222221  11111235899999999999999988 999999986543 3333221     223457


Q ss_pred             ceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352          627 PRICFNKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       627 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      .+++|+|.--++|+|+.|..|.||.....
T Consensus      1355 scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             ceeeecchhHhhhhccCCceEEEeecCCc
Confidence            89999999999999999999999987654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.64  E-value=1.3e-12  Score=142.57  Aligned_cols=331  Identities=15%  Similarity=0.173  Sum_probs=202.6

Q ss_pred             cEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE
Q 001352          456 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR  535 (1093)
Q Consensus       456 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  535 (1093)
                      .+++++-..++.|.|.|..+.+.+.++......-..+.+  ++||+++++++.||.|.++|+.+.+....+.... ...+
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~   82 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG   82 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence            346677888999999999999999999865443333455  5678899999999999999999999877776544 5678


Q ss_pred             EEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc----cCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 001352          536 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNK  610 (1093)
Q Consensus       536 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~  610 (1093)
                      +++|+||++++++...   .+.+.++|.++.+.++.+.....    ....+.++..+|....++..- +.+.|.+.|...
T Consensus        83 i~~s~DG~~~~v~n~~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d  159 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYE---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD  159 (369)
T ss_dssp             EEE--TTTEEEEEEEE---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEcCCCCEEEEEecC---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence            9999999999987642   55699999999999988765431    124577888888888665554 458888889877


Q ss_pred             CceEE--EEecCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEEcCCCceeeecccccc----cceeeeecCCCceeeee
Q 001352          611 VQLLT--TIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSD----NLRKLSVNPISTVTGAG  683 (1093)
Q Consensus       611 ~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~  683 (1093)
                      .+.+.  .+...   .......|+|++++++++ ..++.|.++|..+++....+.....    +...+ .+|        
T Consensus       160 ~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php--------  227 (369)
T PF02239_consen  160 PKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHP--------  227 (369)
T ss_dssp             SSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EET--------
T ss_pred             ccccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCC--------
Confidence            65443  33322   125678999999987765 4567899999887755543321000    00000 000        


Q ss_pred             ccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEee
Q 001352          684 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR  763 (1093)
Q Consensus       684 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~  763 (1093)
                                                                        ..+.+...  ...+...++.-..       
T Consensus       228 --------------------------------------------------~~g~vw~~--~~~~~~~~~~ig~-------  248 (369)
T PF02239_consen  228 --------------------------------------------------GFGPVWAT--SGLGYFAIPLIGT-------  248 (369)
T ss_dssp             --------------------------------------------------TTEEEEEE--EBSSSSEEEEEE--------
T ss_pred             --------------------------------------------------CcceEEee--ccccceecccccC-------
Confidence                                                              00011100  1111111111111       


Q ss_pred             ecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE---e-C-CeEEEEEccCceeEE
Q 001352          764 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA---S-G-GVISLYIVMTFKTIL  838 (1093)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~---~-d-g~i~iwd~~~~~~~~  838 (1093)
                                     ..+.+|+..+.+.+......    ... .-+..+||++++.+.   + + ++|.++|.++.+.+.
T Consensus       249 ---------------~~v~v~d~~~wkvv~~I~~~----G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~  308 (369)
T PF02239_consen  249 ---------------DPVSVHDDYAWKVVKTIPTQ----GGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK  308 (369)
T ss_dssp             ----------------TTT-STTTBTSEEEEEE-S----SSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE
T ss_pred             ---------------CccccchhhcCeEEEEEECC----CCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE
Confidence                           13444565665556665542    233 667889999999998   3 3 789999999998888


Q ss_pred             EECCCC-CCeEEEEEcCCCCCEEEEEeCC-C-eEEEEEcCCcceeeecc
Q 001352          839 TIMPPS-PTATSLAFNPHDNNVIAIGMDD-S-TILIYNARSSEVISKLE  884 (1093)
Q Consensus       839 ~~~~~~-~~i~~l~~s~~d~~~lasg~~d-g-~i~iwd~~~~~~~~~l~  884 (1093)
                      ++.... ..+..+.|++ +|+.+..+..+ + .|.+||..+.+.+.+++
T Consensus       309 ~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  309 TITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             -HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             EEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            775322 3589999999 77766554443 3 79999999999988876

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.64  E-value=1.8e-13  Score=149.44  Aligned_cols=321  Identities=13%  Similarity=0.142  Sum_probs=198.2

Q ss_pred             EEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCC
Q 001352          502 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS  581 (1093)
Q Consensus       502 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~  581 (1093)
                      ++++-..+|.|.+.|..+.+....+......-..+.|+|||+++++++.    ++.|.++|+.+++.++++...    ..
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G----~~   79 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVG----GN   79 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-S----SE
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecC----CC
Confidence            3456677899999999998888888776555556789999999999875    567999999999999888763    35


Q ss_pred             eEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCC-----CCCCceEEEecCCCEEEEEEC-CCeEEEEEcCC
Q 001352          582 VSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGG-----LPENPRICFNKNGTLLAVIAN-ENRIKILETPE  654 (1093)
Q Consensus       582 v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~~  654 (1093)
                      ...+++++||++++++. .++.+.++|.++.+.+..+.....     .+.+..+..+|....+++.-. .+.|.+.|...
T Consensus        80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d  159 (369)
T PF02239_consen   80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD  159 (369)
T ss_dssp             EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred             cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence            78899999999998864 789999999999999988865422     234556777887775555544 47887777665


Q ss_pred             CceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCcccc
Q 001352          655 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK  734 (1093)
Q Consensus       655 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  734 (1093)
                      ...+.....                                                                     ..
T Consensus       160 ~~~~~~~~i---------------------------------------------------------------------~~  170 (369)
T PF02239_consen  160 PKNLKVTTI---------------------------------------------------------------------KV  170 (369)
T ss_dssp             SSCEEEEEE---------------------------------------------------------------------E-
T ss_pred             ccccceeee---------------------------------------------------------------------cc
Confidence            422211000                                                                     01


Q ss_pred             ccceEEEEeecCCceEEEeec-cceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEE----
Q 001352          735 ANKISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF----  809 (1093)
Q Consensus       735 ~~~i~~l~~s~~g~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l----  809 (1093)
                      ........|+|++++++++.. +..+-++|....+.             +.....|.         ..|..+...+    
T Consensus       171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~i~~g~---------~p~~~~~~~~php~  228 (369)
T PF02239_consen  171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VALIDTGK---------KPHPGPGANFPHPG  228 (369)
T ss_dssp             -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEE-SS---------SBEETTEEEEEETT
T ss_pred             cccccccccCcccceeeecccccceeEEEeeccceE-------------EEEeeccc---------cccccccccccCCC
Confidence            122345678888887766543 45666666544322             00111111         0122222221    


Q ss_pred             -----EEccCCCEEEE-EeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEE----eCCCeEEEEEcCCcce
Q 001352          810 -----ALSKNDAYLFS-ASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEV  879 (1093)
Q Consensus       810 -----~~s~dg~~la~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg----~~dg~i~iwd~~~~~~  879 (1093)
                           +....+...++ .+.+.+.+||..+++.++++...... .-+..+| +++++.+.    ...++|.++|..+.+.
T Consensus       229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~  306 (369)
T PF02239_consen  229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKV  306 (369)
T ss_dssp             TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred             cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcce
Confidence                 12223333322 23456678999999999999877666 7888899 89999887    4457999999999988


Q ss_pred             eeeccccc-CCeEEEEEeCCCCEEEEEeCC--CcEEEEeCCCCceee
Q 001352          880 ISKLEGHS-KRVTGLVFSDALNILVSSGGD--AQIFVWDVDGWGIQT  923 (1093)
Q Consensus       880 ~~~l~~h~-~~V~~l~~s~dg~~l~s~s~d--g~i~iwd~~~~~~~~  923 (1093)
                      +.++.... ..+..+.|++||+.+..+..+  +.|.|||..+.+...
T Consensus       307 ~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~  353 (369)
T PF02239_consen  307 VKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK  353 (369)
T ss_dssp             EE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred             eEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence            87775332 358899999999986655443  369999999976554

...

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.64  E-value=4.1e-14  Score=157.85  Aligned_cols=250  Identities=17%  Similarity=0.164  Sum_probs=181.7

Q ss_pred             CCCCeEEEEECC-CCCEEEEEEcCCEEEEEEccCCCcc--cce-EEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEE
Q 001352          396 PGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA--RQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  471 (1093)
Q Consensus       396 h~~~V~~v~~s~-dg~~las~~~d~~i~iwd~~~~~~~--~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  471 (1093)
                      -...|.|++|+| +..++|.|..+|.|.+||+..+...  ... .....|..+++.+.|..+-...-+++++.||.|+.|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            467899999999 5678888899999999999987651  111 123368999999999765442258999999999999


Q ss_pred             ECCCCcee------EEee------cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc--------eEEecCCCC
Q 001352          472 DAVTGSRT------YSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGL  531 (1093)
Q Consensus       472 d~~~~~~~------~~~~------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~~~~  531 (1093)
                      +++.-...      ....      .-...++++.|.+. +-..++.|+.+|.|.--.......        ...+..|.+
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g  399 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG  399 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence            87643221      1111      12345778888765 446799999999988733322211        225566788


Q ss_pred             ceEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeeeeeeecccccCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECC
Q 001352          532 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMN  609 (1093)
Q Consensus       532 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~~~dg~i~iwd~~  609 (1093)
                      +|.++.++|-+..++..+.    +..++||... ...++..+..+.   ..+.+++|||.... ++++..||.+.+||+.
T Consensus       400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence            9999999998876665543    6779999987 556666666655   66999999998755 4557789999999997


Q ss_pred             CCce--EEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352          610 KVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       610 ~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      ....  +......  ....+.+.|+++|+.|++|...|.+.+|++...
T Consensus       473 ~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  473 QDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            5443  3333333  345678889999999999999999999999743

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=4.8e-15  Score=150.92  Aligned_cols=197  Identities=21%  Similarity=0.196  Sum_probs=150.0

Q ss_pred             EEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeee
Q 001352          848 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL  927 (1093)
Q Consensus       848 ~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~  927 (1093)
                      .+++|++ +|..|++|+.||++|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||++.++....   .
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a---~  222 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA---R  222 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh---h
Confidence            7899999 89999999999999999988888888888899999999999999999999999 79999999973211   1


Q ss_pred             ecCCCcccCCCCceEEEEccCC---CEE-EEE--eCCeEEEEEcCCcce-----eeeeecCCCCCEEEEEEccCCCEEEE
Q 001352          928 QTPDGVMTLAPSETHIQFHKDQ---TRF-LLV--HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT  996 (1093)
Q Consensus       928 ~~~~~~~~~~~~v~~~~~s~dg---~~l-~~~--~d~~i~vwd~~~~~~-----~~~~~~~h~~~v~~~~fs~dg~~l~t  996 (1093)
                      ..+.+..   .....+.|+.|+   .+. ++.  .-+.|..|++.....     .++.. .....|++++.|+||++++.
T Consensus       223 ~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~Al  298 (398)
T KOG0771|consen  223 KTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLAL  298 (398)
T ss_pred             cCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEE
Confidence            1111211   247789999988   333 332  334566666542221     11111 12457999999999999999


Q ss_pred             EeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352          997 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus       997 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
                      |+.||.|.|+++.+.+.+.-+.       ..|...|.  .+.|+| |.+.++..+.|.+..+..++-
T Consensus       299 GT~dGsVai~~~~~lq~~~~vk-------~aH~~~VT--~ltF~P-dsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQYVK-------EAHLGFVT--GLTFSP-DSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eccCCcEEEEEeceeeeeEeeh-------hhheeeee--eEEEcC-CcCcccccccCCceeEEEEee
Confidence            9999999999998877664333       33555455  688999 589999999999999999865

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.63  E-value=4.2e-11  Score=123.25  Aligned_cols=412  Identities=11%  Similarity=0.093  Sum_probs=229.8

Q ss_pred             CceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-------EcCC
Q 001352          347 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-------YSKH  419 (1093)
Q Consensus       347 g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~-------~~d~  419 (1093)
                      |.+++.++..|  +..+++.+|+..+                    +..|-+-|+...|+|||+.+|..       ...+
T Consensus        50 GD~IiFt~~Dd--lWe~slk~g~~~r--------------------itS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~ta  107 (668)
T COG4946          50 GDRIIFTCCDD--LWEYSLKDGKPLR--------------------ITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTA  107 (668)
T ss_pred             CcEEEEEechH--HHHhhhccCCeeE--------------------EecccceeccccCCCCCcEEEEEEEEecCCCccc
Confidence            45567776643  4555667776654                    55688889999999999999872       2233


Q ss_pred             EEEEEEccCCCcccceEEeccccccEE-EEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec--------CCCCeE
Q 001352          420 IVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--------HGAPVY  490 (1093)
Q Consensus       420 ~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~--------h~~~v~  490 (1093)
                      .+.+.+.+.|+..+ + ++-|  .+-+ -+-|.|||+  ++++...-.-..-|-     ++..+..        .-++.+
T Consensus       108 Dly~v~~e~Ge~kR-i-TyfG--r~fT~VaG~~~dg~--iiV~TD~~tPF~q~~-----~lYkv~~dg~~~e~LnlGpat  176 (668)
T COG4946         108 DLYVVPSEDGEAKR-I-TYFG--RRFTRVAGWIPDGE--IIVSTDFHTPFSQWT-----ELYKVNVDGIKTEPLNLGPAT  176 (668)
T ss_pred             cEEEEeCCCCcEEE-E-EEec--cccceeeccCCCCC--EEEEeccCCCcccce-----eeeEEccCCceeeeccCCcee
Confidence            47888888887443 2 2223  2233 346899998  666655433222221     1221111        112222


Q ss_pred             EeeecccCCccEEEEEecC-----------C-eEEEEEcCCCC-ceEEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001352          491 SLCPHAKENIHFIFSISVD-----------G-KIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  557 (1093)
Q Consensus       491 ~~~~~~~~~~~~l~s~~~d-----------g-~i~vwd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~  557 (1093)
                      .+.+   .|| .++.|-.-           | .=++|--..+. .-..+..-.+.|.+-..-.+.-++++   +-++-+.
T Consensus       177 hiv~---~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFls---D~eG~Gn  249 (668)
T COG4946         177 HIVI---KDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLS---DHEGVGN  249 (668)
T ss_pred             eEEE---eCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEe---cccCccc
Confidence            2222   122 22222110           0 01233222221 11111111222322222222223333   3345666


Q ss_pred             EEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE---ecCCCC--C-CC---ce
Q 001352          558 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI---DAGGGL--P-EN---PR  628 (1093)
Q Consensus       558 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~--~-~v---~~  628 (1093)
                      ++--|+....+.+...-+     .-.+-..+.||+.++- +..|.|++||..+.++...-   +.....  . .+   .-
T Consensus       250 lYSvdldGkDlrrHTnFt-----dYY~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~psky  323 (668)
T COG4946         250 LYSVDLDGKDLRRHTNFT-----DYYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKY  323 (668)
T ss_pred             eEEeccCCchhhhcCCch-----hccccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHh
Confidence            777776644433222211     1223334667877665 44578999999876543221   111000  0 00   01


Q ss_pred             EE-Eec-CCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeec
Q 001352          629 IC-FNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  706 (1093)
Q Consensus       629 v~-~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  706 (1093)
                      +. |++ +|.+++..+. |...|.+...+-.++.                                              
T Consensus       324 ledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv----------------------------------------------  356 (668)
T COG4946         324 LEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV----------------------------------------------  356 (668)
T ss_pred             hhhhccCCCcEEEEEec-CcEEEECCCCCeeEEc----------------------------------------------
Confidence            11 333 5777777766 4555544332211111                                              


Q ss_pred             ccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccc-eeEEeeecCcccCcCcccccccCCcccC
Q 001352          707 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRLYQ  785 (1093)
Q Consensus       707 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg-~v~vw~~~~~~~~~~~~~~~~~~~~~~~  785 (1093)
                                                ++...|.-..+..+++-++.+..|| .+-+++....                  
T Consensus       357 --------------------------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~------------------  392 (668)
T COG4946         357 --------------------------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG------------------  392 (668)
T ss_pred             --------------------------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc------------------
Confidence                                      1233344455555666678888887 6777665432                  


Q ss_pred             CCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeC-CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEe
Q 001352          786 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM  864 (1093)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~  864 (1093)
                          + .....    +.-+.|.++..++||++++++.+ ..+.+.|+.+|.....-+...+-|+.++|+| +++++|-+-
T Consensus       393 ----e-~kr~e----~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYaf  462 (668)
T COG4946         393 ----E-VKRIE----KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAF  462 (668)
T ss_pred             ----e-EEEee----CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEec
Confidence                2 11111    25567899999999999999986 7899999999987766666778899999999 999999988


Q ss_pred             CCC----eEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEe
Q 001352          865 DDS----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG  906 (1093)
Q Consensus       865 ~dg----~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s  906 (1093)
                      -+|    .|+++|+.+++....-. ..+.=.+-+|.||+++|.--+
T Consensus       463 P~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         463 PEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence            776    89999999887654332 223334578999999887654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.62  E-value=9.3e-12  Score=141.11  Aligned_cols=277  Identities=15%  Similarity=0.117  Sum_probs=190.3

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCC--CCeEEEEECCCCCEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG--VSVNRVVWSPDGSLLGV  414 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~s~dg~~las  414 (1093)
                      .+.+.++-.  +||||-  ....|.+||+.++..+....             +...+..|.  ..+.     -.+.++++
T Consensus         9 ~l~~~~~~~--~~llag--~gp~i~~yd~~s~~li~~~~-------------~~~~~~~H~~e~~~~-----l~~~~~v~   66 (967)
T KOG0974|consen    9 PLNLPQLVS--DYLLAG--SGPEILVYDLSSGCLIRHLI-------------QSKILEVHRGEGKVK-----LLSGKIVT   66 (967)
T ss_pred             cccchhhcc--ceeeec--CCCceEEeeCCchhHhhhhh-------------hhcccccccccccce-----eccceEEE
Confidence            344444444  465543  33679999999988775311             111133340  1111     12344555


Q ss_pred             EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCe-E-Ee
Q 001352          415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-Y-SL  492 (1093)
Q Consensus       415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v-~-~~  492 (1093)
                      +..-+.+..=+..-.       .+..-.+.|....+.-+.+  .++.+..+..+.+||...+.....+....... . ++
T Consensus        67 ~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~  137 (967)
T KOG0974|consen   67 CAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSL  137 (967)
T ss_pred             EEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEE
Confidence            544333333222211       1112333444566666667  57777778899999998888777665322211 1 12


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee-e
Q 001352          493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-T  571 (1093)
Q Consensus       493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~  571 (1093)
                      -+-.+.+.-++++|+.-+.|.+|++...+....+.+|.+.+.++.++-||+++++++.    |..+++|++.+++... .
T Consensus       138 ~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~  213 (967)
T KOG0974|consen  138 IIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCT  213 (967)
T ss_pred             EEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCcc
Confidence            2223455578999999999999999865555578899999999999999999999987    6679999999998776 5


Q ss_pred             eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001352          572 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE  651 (1093)
Q Consensus       572 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~  651 (1093)
                      .-+|.   ..+..++|.|+  .++++++|-+.++|+.+ +..+..+..|.. ..+..++..++...+++++.|+.+++|+
T Consensus       214 ~fgHs---aRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  214 GFGHS---ARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             ccccc---ceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhh
Confidence            55666   89999999997  89999999999999765 444446665544 4589999999999999999999999999


Q ss_pred             cCCC
Q 001352          652 TPES  655 (1093)
Q Consensus       652 ~~~~  655 (1093)
                      ....
T Consensus       287 l~~r  290 (967)
T KOG0974|consen  287 LNGR  290 (967)
T ss_pred             hhcc
Confidence            8753

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.62  E-value=5.3e-14  Score=146.73  Aligned_cols=247  Identities=11%  Similarity=0.077  Sum_probs=155.2

Q ss_pred             ccCCCEEEEEe-CCeEEEEEccCceeEEEEC----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------
Q 001352          812 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------  876 (1093)
Q Consensus       812 s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~----------  876 (1093)
                      .|.+--+.++- -|.+.+.|....+..+.+.    -....++|+.|-|.+...+.++-.+|.+++||..-          
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence            45666666675 4888888876522222111    12368999999996667777788999999997531          


Q ss_pred             ----cc--------------eeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCC
Q 001352          877 ----SE--------------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP  938 (1093)
Q Consensus       877 ----~~--------------~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  938 (1093)
                          +.              .+..+.--.+.|...+|||||++||+.+.||.+||+|+.+.+     ++.......   +
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYF---G  333 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYF---G  333 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhc---c
Confidence                11              111122223568889999999999999999999999999844     333333333   3


Q ss_pred             CceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001352          939 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1017 (1093)
Q Consensus       939 ~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~ 1017 (1093)
                      ...+++|||||++|++ |.|.-|.||.....+.+.. -.+|...|..|+|.|   |.-+.-+++...=-|-........+
T Consensus       334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp---ytt~~ee~~~~~~~~~~~~~~~~~~  409 (636)
T KOG2394|consen  334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP---YTTSTEEWNNFSGMDSTFSDVAHDF  409 (636)
T ss_pred             ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc---cccccccccccccccccccchhccc
Confidence            7899999999999999 6888999999999888876 678999999999987   3332222111000000000000001


Q ss_pred             ccccccCCCCCCCccceeEEEeCC-CCCCEEEEEeCCCcEEEEecCCCCCCcccCCCcc
Q 001352         1018 LSTAYLRPTTSCLHVYPHAIAAHP-LKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1075 (1093)
Q Consensus      1018 ~~~~~~~~~~~~~~v~~~~~~~~p-~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~ 1075 (1093)
                      + ....+.....+  .+++-.+-+ .....|.+++.|.++.+||+.++...  .+||.-
T Consensus       410 ~-~r~~~~~S~~~--~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~--~~~p~~  463 (636)
T KOG2394|consen  410 E-IRANGTGSAEG--CPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV--PHPPLY  463 (636)
T ss_pred             c-cccCCCCCcCC--CcccccccccceEEEeecccccceEEEEecchhhcc--cCCchh
Confidence            0 00001110000  011110111 02357999999999999999876643  355554

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.62  E-value=1.5e-11  Score=139.54  Aligned_cols=198  Identities=15%  Similarity=0.169  Sum_probs=155.0

Q ss_pred             CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCC-----CeEEEEECCC
Q 001352          334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPD  408 (1093)
Q Consensus       334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~s~d  408 (1093)
                      -.+.|....+.-+.+ .++.+..++.+.|||...+......                    .+..     ...-+.++++
T Consensus        86 ~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i--------------------~~~er~~l~~~~~~g~s~~  144 (967)
T KOG0974|consen   86 FSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKI--------------------QSDERCTLYSSLIIGDSAE  144 (967)
T ss_pred             ccccccccchhhhcc-eEEEEEcCceEEEEecccCceehhc--------------------CCCceEEEEeEEEEeccCc
Confidence            344556677777776 4888888999999999887766431                    1111     2223456788


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE-EeecCCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGA  487 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~-~~~~h~~  487 (1093)
                      .-++++|+.-+.|.+|+....+.   ...+.||.+.|.++.|+.||.  ++++.|.|.++++|++++++.+. ..-+|+.
T Consensus       145 ~~~i~~gsv~~~iivW~~~~dn~---p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa  219 (967)
T KOG0974|consen  145 ELYIASGSVFGEIIVWKPHEDNK---PIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSA  219 (967)
T ss_pred             EEEEEeccccccEEEEeccccCC---cceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccc
Confidence            88999999999999999983321   114789999999999999999  89999999999999999998876 6678999


Q ss_pred             CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352          488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  566 (1093)
Q Consensus       488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~  566 (1093)
                      .|..+++.+.    .+++++.|-+.++|+.+..... .+..|. ..+..++..++...+++++.    |+.+++|+....
T Consensus       220 Rvw~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  220 RVWACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR  290 (967)
T ss_pred             eeEEEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence            9999999654    8999999999999976543333 555554 47889999988888888876    667999997653

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.61  E-value=3.9e-14  Score=136.29  Aligned_cols=241  Identities=14%  Similarity=0.139  Sum_probs=173.0

Q ss_pred             CCCCeeEEEEccCCC----EEEEEeCCeEEEEEccCc--eeE--EEE-----CCCCCCeEEEEEcCCCCCEEEEEeCCCe
Q 001352          802 SQEAVPCFALSKNDA----YLFSASGGVISLYIVMTF--KTI--LTI-----MPPSPTATSLAFNPHDNNVIAIGMDDST  868 (1093)
Q Consensus       802 ~~~~v~~l~~s~dg~----~la~~~dg~i~iwd~~~~--~~~--~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg~  868 (1093)
                      |..+++.+.|.|+..    -++..++..+++|.+...  +..  ..+     ..+..+++++.|..-+.++|.+.+-|-+
T Consensus        95 ~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT  174 (364)
T KOG0290|consen   95 HPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT  174 (364)
T ss_pred             CCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe
Confidence            888999999999873    233345678999998732  211  111     2355689999999878899999999999


Q ss_pred             EEEEEcCCcc---eeeecccccCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEE
Q 001352          869 ILIYNARSSE---VISKLEGHSKRVTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  944 (1093)
Q Consensus       869 i~iwd~~~~~---~~~~l~~h~~~V~~l~~s~dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  944 (1093)
                      ..|||+.++.   ...++-+|..+|..++|+.++ +.+||+|.||.||++|+..-+..+  .+.......   .+...++
T Consensus       175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST--IIYE~p~~~---~pLlRLs  249 (364)
T KOG0290|consen  175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST--IIYEDPSPS---TPLLRLS  249 (364)
T ss_pred             EEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce--EEecCCCCC---Ccceeec
Confidence            9999999863   457788999999999999865 679999999999999998754222  333322211   3588899


Q ss_pred             EccCC-CEEEE-E-eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceEEEeccc
Q 001352          945 FHKDQ-TRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILST 1020 (1093)
Q Consensus       945 ~s~dg-~~l~~-~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~d-g~~l~t~~~dg~v~vwd~~~~~~~~~~~~~ 1020 (1093)
                      |++.. +++|+ . ....|.|.|+......-.-+.+|.+.|..++|-|. +..|.|+|.|..+.+||+.+--......+.
T Consensus       250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi  329 (364)
T KOG0290|consen  250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI  329 (364)
T ss_pred             cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence            98865 56666 4 44579999998665444446789999999999995 467999999999999999865331112211


Q ss_pred             cccCCCCCCCccceeEEEeCCCCCCEEEEEeC
Q 001352         1021 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1052 (1093)
Q Consensus      1021 ~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~ 1052 (1093)
                      ....   .+..|.  .+.|+|..+.-++.+..
T Consensus       330 lay~---a~~EVN--qi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  330 LAYT---AGGEVN--QIQWSSSQPDWIAICFG  356 (364)
T ss_pred             hhhh---ccceee--eeeecccCCCEEEEEec
Confidence            1111   134455  45666655666766553

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=8.1e-15  Score=151.00  Aligned_cols=296  Identities=14%  Similarity=0.141  Sum_probs=222.3

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      |.+|.+.|..|.|+..|..|++|+.|..|.+||+.++......  ..||...|....|-|.....-+++++.||.+++=.
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            7789999999999999999999999999999999998754432  34899999988898865433699999999999876


Q ss_pred             CC-CCce--eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCC---ceEEEEEccCCC
Q 001352          473 AV-TGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGL---GCTRMAYSANGR  543 (1093)
Q Consensus       473 ~~-~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~---~v~~~~~s~d~~  543 (1093)
                      +. +|.+  ...+..|.++|..++.-|.. -..|.+++.|+.+.-+|++.......+..   +..   ....++..|...
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt  294 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT  294 (559)
T ss_pred             eccccceecceecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence            54 4433  34556799999999876543 35799999999999999987665433322   222   457788888766


Q ss_pred             -EEEEEecCCCCceeEEEEeCCCCee------eeeeecccc---cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--C
Q 001352          544 -RLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQL---QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V  611 (1093)
Q Consensus       544 -~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~--~  611 (1093)
                       .+++++.    +.++++||.+.-..      +..+..+..   ..-.|++++|+.++.-+++...|-.|+++...-  |
T Consensus       295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G  370 (559)
T KOG1334|consen  295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG  370 (559)
T ss_pred             cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence             5666654    66789998764322      223322221   123589999998888888888888999995432  2


Q ss_pred             ----------ceEEE-EecCCCCCCCceEEE-ecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCce
Q 001352          612 ----------QLLTT-IDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  679 (1093)
Q Consensus       612 ----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  679 (1093)
                                ..+.. +.+|.....|..+-| .|...++++|++=|.|.||+-.+++.++.+.+-..-|+|+.-+     
T Consensus       371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpH-----  445 (559)
T KOG1334|consen  371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPH-----  445 (559)
T ss_pred             CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCC-----
Confidence                      12222 455555555777765 5788999999999999999999999999999888888888776     


Q ss_pred             eeeeccCCceEecCCCCCCCccceeecccccceeccee
Q 001352          680 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  717 (1093)
Q Consensus       680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  717 (1093)
                                       |--..|++.+-|..|+||...
T Consensus       446 -----------------P~~PvLAsSGid~DVKIWTP~  466 (559)
T KOG1334|consen  446 -----------------PHLPVLASSGIDHDVKIWTPL  466 (559)
T ss_pred             -----------------CCCchhhccCCccceeeecCC
Confidence                             445668899999999999853

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.61  E-value=1.4e-13  Score=134.63  Aligned_cols=230  Identities=14%  Similarity=0.175  Sum_probs=175.5

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEEC-C
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-V  474 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~-~  474 (1093)
                      -..+|+|.||++|+..+|++.....|.||............++..|...|+.++|+|..+  .|++++.|..-+||.. .
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence            347899999999999999999999999999998887777778999999999999999998  7999999999999998 3


Q ss_pred             CC--ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE----EecCCCCceEEEEEccCCCEEEEE
Q 001352          475 TG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSC  548 (1093)
Q Consensus       475 ~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~d~~~l~~~  548 (1093)
                      .+  ++...+..++...+++.|+|.+  +.+++|+....|.||-++....-.    .-......|.++.|+|++-+|++|
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            33  3445566789999999997655  589999999999999776654332    223345678999999999999998


Q ss_pred             ecCCCCceeEEEEeC-----CC-------------CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001352          549 GTSKEGESFLVEWNE-----SE-------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  610 (1093)
Q Consensus       549 ~~~~~~~~~i~iwd~-----~~-------------~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~  610 (1093)
                      +.    |+..+++..     +.             |+++..+..   ..+.+..+.|+|.|+.|+-.+.|.++.+-|...
T Consensus       165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~---~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS---SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc---CCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence            86    444666532     11             222333322   247899999999999999999999999999877


Q ss_pred             Cc-eEEEEecCCCCCCCceEEEecCCCEE
Q 001352          611 VQ-LLTTIDAGGGLPENPRICFNKNGTLL  638 (1093)
Q Consensus       611 ~~-~~~~~~~~~~~~~v~~v~~s~~~~~l  638 (1093)
                      .. .+.......  .+..++.|-.+...+
T Consensus       238 p~~~v~~~~~~~--lP~ls~~~ise~~vv  264 (361)
T KOG1523|consen  238 PSERVQSVATAQ--LPLLSVSWISENSVV  264 (361)
T ss_pred             Cchhccchhhcc--CCceeeEeecCCcee
Confidence            65 233322221  234566665544433

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.60  E-value=8.4e-14  Score=155.37  Aligned_cols=252  Identities=17%  Similarity=0.202  Sum_probs=184.5

Q ss_pred             CCCceeeeecCCCceEEEEEccCCcEEEEecCCCcee--EEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC--
Q 001352          335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS--  410 (1093)
Q Consensus       335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~--  410 (1093)
                      ...|.|+.|+|....++|.|..+|+|.+||+..+...  ...               ......|..+|+.+.|-.+-.  
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l---------------s~~~~sh~~~v~~vvW~~~~~~~  306 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL---------------SALEVSHSEPVTAVVWLQNEHNT  306 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc---------------ccccccCCcCeEEEEEeccCCCC
Confidence            3499999999998889999999999999999887652  111               112556999999999987544  


Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEec---------cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE---CCCCc-
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AVTGS-  477 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd---~~~~~-  477 (1093)
                      -+++++.||.|+.|++..-........+.         .-...+++++|.+.... .++.|+.+|.|.-=+   ...+. 
T Consensus       307 ~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~~~~  385 (555)
T KOG1587|consen  307 EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTPAPE  385 (555)
T ss_pred             ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCccccc
Confidence            49999999999999887543211111111         12236899999988766 688899999887733   22222 


Q ss_pred             ----eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          478 ----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       478 ----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                          .+..+..|.++|+++.++|-.. ..+++++ |-++++|.-. ...+...+..+...+++++|||-.-.++++.   
T Consensus       386 ~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~---  460 (555)
T KOG1587|consen  386 VSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV---  460 (555)
T ss_pred             ccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE---
Confidence                2335567899999999877654 2444444 9999999887 5666667777777799999999876666554   


Q ss_pred             CCceeEEEEeCCCCee--eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001352          553 EGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  610 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~  610 (1093)
                      +++|.+.+||+.....  +.+.....   .....+.|+++|+.+++|...|++.+|++..
T Consensus       461 d~~G~l~iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  461 DGDGNLDIWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cCCCceehhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            3478899999875433  33322222   5677888999999999999999999999864

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.60  E-value=1.1e-13  Score=157.87  Aligned_cols=364  Identities=12%  Similarity=0.062  Sum_probs=222.2

Q ss_pred             CceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCc-cccccccCccc
Q 001352          655 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS-ECQSLLLPSKV  733 (1093)
Q Consensus       655 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~-~~~~~~~~~~~  733 (1093)
                      |..+..+..|...+..++.+                     ++++.++++|+.||+|++|+...-... ....-...-..
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s---------------------~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~ 1096 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVS---------------------SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP 1096 (1431)
T ss_pred             ceEeehhhhccccccceeec---------------------CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec
Confidence            34556666677777666666                     577899999999999999996543322 11111111111


Q ss_pred             cccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc
Q 001352          734 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  813 (1093)
Q Consensus       734 ~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  813 (1093)
                      ..+.+..+...+++..+++++.||.+++.++.....    ...           ...+........  ...-|..-+|..
T Consensus      1097 ~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~----~~~-----------~~~~~ri~n~~~--~g~vv~m~a~~~ 1159 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV----SKR-----------VATQVRIPNLKK--DGVVVSMHAFTA 1159 (1431)
T ss_pred             cCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc----ccc-----------eeeeeecccccC--CCceEEeecccc
Confidence            467889999999999999999999999998765210    000           011111111111  222233333433


Q ss_pred             C-CC-EEEEEeC-CeEEEEEccCceeEEEEC--CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecc-ccc
Q 001352          814 N-DA-YLFSASG-GVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHS  887 (1093)
Q Consensus       814 d-g~-~la~~~d-g~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~-~h~  887 (1093)
                      . +. .++.+.+ +.|..||+.......+++  ...+.|++++.+| .+.++++|+..|.+.+||++-+.++.... ++.
T Consensus      1160 ~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~ 1238 (1431)
T KOG1240|consen 1160 IVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR 1238 (1431)
T ss_pred             cccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCccc
Confidence            2 33 5666664 889999998776655544  3457899999999 89999999999999999999888776654 355


Q ss_pred             CCeEEEEEeCCC---CEEEEEe--CCCcEEEEeCCCCceeeeeeeecCCC---cc--------cCCCCceEEEEccCCCE
Q 001352          888 KRVTGLVFSDAL---NILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDG---VM--------TLAPSETHIQFHKDQTR  951 (1093)
Q Consensus       888 ~~V~~l~~s~dg---~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~---~~--------~~~~~v~~~~~s~dg~~  951 (1093)
                      .+|..+...|-.   ...++++  ..+.|.+|++.+|.............   +.        .........++...+.+
T Consensus      1239 ~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~ 1318 (1431)
T KOG1240|consen 1239 APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGF 1318 (1431)
T ss_pred             CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCce
Confidence            778888777643   3555544  47789999999986544222210000   00        00011223334444455


Q ss_pred             EEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcE-EEE-----EcCCCceEEEeccccccC
Q 001352          952 FLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIH-----EASNLEVQCRILSTAYLR 1024 (1093)
Q Consensus       952 l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v-~vw-----d~~~~~~~~~~~~~~~~~ 1024 (1093)
                      +.+ ++|..|+.||....+...-...+.+.......++.+ ..++.++.--.. ...     +...++...........+
T Consensus      1319 ~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~p 1397 (1431)
T KOG1240|consen 1319 LLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDP 1397 (1431)
T ss_pred             eeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCC
Confidence            555 689999999998765542222232223333333332 223322211000 011     111122234455566677


Q ss_pred             CCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEe
Q 001352         1025 PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1060 (1093)
Q Consensus      1025 ~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1060 (1093)
                      ...|.+.|..++....+  ..+|++++.||.|.+|.
T Consensus      1398 s~~H~d~Itdma~~~~~--q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1398 STYHHDPITDMATLKSE--QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             cccccchhhhhhhhccC--ccEEEEecCCCeeeecC
Confidence            77789999988888776  47999999999999994

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=4.3e-14  Score=160.48  Aligned_cols=225  Identities=18%  Similarity=0.191  Sum_probs=148.5

Q ss_pred             HHHhhccCCCCceeeeecCCCceEEEEEccC---CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEE
Q 001352          327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  403 (1093)
Q Consensus       327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v  403 (1093)
                      ..+.+..|...+...+|||||+++ |..+.+   ..|.+||+.+++......                 +.+|   ..++
T Consensus       195 ~~~~lt~~~~~v~~p~wSPDG~~l-a~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~---~~~~  253 (429)
T PRK01742        195 NQFIVNRSSQPLMSPAWSPDGSKL-AYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH---NGAP  253 (429)
T ss_pred             CceEeccCCCccccceEcCCCCEE-EEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc---cCce
Confidence            345677788889999999999974 554432   469999999886432111                 2233   3468


Q ss_pred             EECCCCCEEEEEE-cCCEEEEE--EccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-cee
Q 001352          404 VWSPDGSLLGVAY-SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRT  479 (1093)
Q Consensus       404 ~~s~dg~~las~~-~d~~i~iw--d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~  479 (1093)
                      +|||||++|++++ .+|.+.||  |+.+++. +   .+..+...+...+|+|||+. +++++..++...||++... ...
T Consensus       254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~  328 (429)
T PRK01742        254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGA  328 (429)
T ss_pred             eECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCe
Confidence            9999999998875 57765555  5555542 2   45567778889999999995 3444556788888876532 222


Q ss_pred             EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352          480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  559 (1093)
Q Consensus       480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~  559 (1093)
                      ..+ .+..  ....|  ++||+.|+..+.++ +.+||+.++........  .....+.|+|||+++++++.++. ...+.
T Consensus       329 ~~l-~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~-~~~l~  399 (429)
T PRK01742        329 SLV-GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGL-GKVLQ  399 (429)
T ss_pred             EEe-cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCC-ceEEE
Confidence            333 3433  34455  55778888887765 45599887765433222  23356789999999999876322 22233


Q ss_pred             EEeCCCCeeeeeeecccccCCCeEEEEEcCC
Q 001352          560 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTA  590 (1093)
Q Consensus       560 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~  590 (1093)
                      +++ .+|..++.+..+.   +.+...+|+|-
T Consensus       400 ~~~-~~G~~~~~l~~~~---g~~~~p~wsp~  426 (429)
T PRK01742        400 LVS-ADGRFKARLPGSD---GQVKFPAWSPY  426 (429)
T ss_pred             EEE-CCCCceEEccCCC---CCCCCcccCCC
Confidence            444 3577777777666   67788889874

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=9.8e-13  Score=130.72  Aligned_cols=288  Identities=16%  Similarity=0.167  Sum_probs=190.0

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC-CCEEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVA  415 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d-g~~las~  415 (1093)
                      .+..++|++--- -+|++..|-.|+|||-.......-                   .......|+|++|-|. ++-|++|
T Consensus       100 dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~L-------------------ks~sQrnvtclawRPlsaselavg  159 (445)
T KOG2139|consen  100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTKL-------------------KSVSQRNVTCLAWRPLSASELAVG  159 (445)
T ss_pred             ceeeEeechhhh-hhhhhccCcEEEEeccCCCCCcee-------------------cchhhcceeEEEeccCCcceeeee
Confidence            677888988543 377888999999999776222110                   1224568999999995 5678888


Q ss_pred             EcCCEEEEEEccCCCc-----------ccceEEeccccccEEEEEeeCCCCcEEEEEEcC-CCcEEEEECCCCceeEEee
Q 001352          416 YSKHIVQLYAYHGGSD-----------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFE  483 (1093)
Q Consensus       416 ~~d~~i~iwd~~~~~~-----------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~~  483 (1093)
                      +..| |.||....--.           ..+...-.+| .+|+++.|.+||.  .+++++. |..|.|||..+|.++.-..
T Consensus       160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~  235 (445)
T KOG2139|consen  160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP  235 (445)
T ss_pred             ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence            8877 99998753211           1112233455 6899999999999  6888775 5679999999998876554


Q ss_pred             cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001352          484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  563 (1093)
Q Consensus       484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~  563 (1093)
                      ...+.+.-+.|+|  |+.+|+++.-|+..++|...............+.|...+|+|+|++|+.....   ...++-...
T Consensus       236 ~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f  310 (445)
T KOG2139|consen  236 KGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTF  310 (445)
T ss_pred             cCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEee
Confidence            5567788888955  66799999999999999554433333333344589999999999988766532   222222111


Q ss_pred             --CCCee-----------e------eeeecccccCCCeEEEEEcCCCCEEEEEeCCC--------cEEEEECCCCceEEE
Q 001352          564 --SEGAI-----------K------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------VIKIWDMNKVQLLTT  616 (1093)
Q Consensus       564 --~~~~~-----------~------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~  616 (1093)
                        +.+..           +      ....+...-.+.+.+++|.|.|.++++.-..+        .|.+||....-.+..
T Consensus       311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel  390 (445)
T KOG2139|consen  311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL  390 (445)
T ss_pred             cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence              11100           0      11112111236788999999999999865433        366787765444433


Q ss_pred             EecC-CCCCCCceEEEec---CCCEEEEEECCCeEEEEEcC
Q 001352          617 IDAG-GGLPENPRICFNK---NGTLLAVIANENRIKILETP  653 (1093)
Q Consensus       617 ~~~~-~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~~  653 (1093)
                      .... .....-..++|+|   ++.+|.++-..|.+.-|++.
T Consensus       391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            3111 1112245677776   67888888888888877654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=2.6e-13  Score=142.73  Aligned_cols=284  Identities=14%  Similarity=0.193  Sum_probs=208.7

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  412 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l  412 (1093)
                      +|...-+.+..||||+|++|+|..-..|++||+..-.....+.+                   ....|.-.-.|.|=..+
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD~SK~  109 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDDYSKS  109 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccchhhh
Confidence            46778899999999999999999999999999988765544221                   24566666777777777


Q ss_pred             EEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEe
Q 001352          413 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  492 (1093)
Q Consensus       413 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  492 (1093)
                      +.-..|.+|.+..... ...+.  .+   ...-.+++++.-...  |+.++....|+-.+++.|+.+..+....+.++++
T Consensus       110 v~L~~DR~IefHak~G-~hy~~--RI---P~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v  181 (703)
T KOG2321|consen  110 VFLQNDRTIEFHAKYG-RHYRT--RI---PKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV  181 (703)
T ss_pred             eEeecCceeeehhhcC-eeeee--ec---CcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceee
Confidence            7777888877654332 11110  11   112234555544443  3444445568999999999999998888999999


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-----------CceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001352          493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-----------LGCTRMAYSANGRRLFSCGTSKEGESFLVEW  561 (1093)
Q Consensus       493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----------~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw  561 (1093)
                      .+++..  .+|++|+.+|.|.+||.+.......+....           ..|+++.|+.+|-.+++|+.    .|.+.+|
T Consensus       182 ~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iy  255 (703)
T KOG2321|consen  182 SINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIY  255 (703)
T ss_pred             eecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEE
Confidence            886543  589999999999999998877655443321           14899999999999999986    6679999


Q ss_pred             eCCCCeeeeeeecccccCCCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEE
Q 001352          562 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV  640 (1093)
Q Consensus       562 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  640 (1093)
                      |+++.+++..-....  .-+|..+.|.+.+.. -+.......++|||-.+|+....+...   ..++.+|+-|++.++++
T Consensus       256 DLRa~~pl~~kdh~~--e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sGm~f~  330 (703)
T KOG2321|consen  256 DLRASKPLLVKDHGY--ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSGMFFT  330 (703)
T ss_pred             EcccCCceeecccCC--ccceeeecccccCCCceEEecchHHhhhcccccCCceeecccc---CCcCceeeecCCceEEE
Confidence            999988765433222  367889999776332 233344567999999999999888654   44899999999999999


Q ss_pred             EECCCeEEEEEcCC
Q 001352          641 IANENRIKILETPE  654 (1093)
Q Consensus       641 ~~~dg~i~iw~~~~  654 (1093)
                      +-.++.+..|=+..
T Consensus       331 Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  331 ANESSKMHTYYIPS  344 (703)
T ss_pred             ecCCCcceeEEccc
Confidence            99988887776654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=5.1e-12  Score=124.01  Aligned_cols=241  Identities=13%  Similarity=0.174  Sum_probs=169.3

Q ss_pred             CeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC-----CCcEEEEEC
Q 001352          399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDA  473 (1093)
Q Consensus       399 ~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-----d~~i~vwd~  473 (1093)
                      ...+++|+.|..-+++|..+| .+||+.+--+...   .-..+.+.+.-+...--.+.+.|+-|+.     -..+.|||=
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence            445599999999999998888 8999987522111   1111222222222222233323443332     246999997


Q ss_pred             CCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCCC--ceEEEEEccCCCEEEEEec
Q 001352          474 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGL--GCTRMAYSANGRRLFSCGT  550 (1093)
Q Consensus       474 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~--~v~~~~~s~d~~~l~~~~~  550 (1093)
                      ...+++.++. ...+|.++++...    .|++ -..+.|.||.+. +.+....+.....  ..-+++-+.+...|+.-+.
T Consensus        83 ~k~~~i~el~-f~~~I~~V~l~r~----riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~  156 (346)
T KOG2111|consen   83 LKERCIIELS-FNSEIKAVKLRRD----RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF  156 (346)
T ss_pred             ccCcEEEEEE-eccceeeEEEcCC----eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence            7788888886 7789999998542    3443 356789999887 4455555444332  2333333333344444332


Q ss_pred             CCCCceeEEEEeCCCCee--eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceEEEEecCCCCCCCc
Q 001352          551 SKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENP  627 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~  627 (1093)
                         ..|.|++-|+..-+.  ...+..|.   ..|.+++.+.+|..++++|..|+ |||||..+|+.+..+........+.
T Consensus       157 ---k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy  230 (346)
T KOG2111|consen  157 ---KTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY  230 (346)
T ss_pred             ---ccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence               357799999876555  36667777   99999999999999999999998 7899999999999998776667899


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352          628 RICFNKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       628 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      +++|||+..+||++++.|++.|+.+...
T Consensus       231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            9999999999999999999999998864

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=2.3e-14  Score=149.29  Aligned_cols=245  Identities=13%  Similarity=0.185  Sum_probs=170.4

Q ss_pred             HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      .-+.|.||++-|+|++|+.||. +|++|+.|-.+.|||.-..+.++.                  +-+||...|.++.|-
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFv  102 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFV  102 (758)
T ss_pred             hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeee
Confidence            4567899999999999999998 799999999999999987777654                  256899999999999


Q ss_pred             C--CCCEEEEEEcCCEEEEEEccCCCc-------ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352          407 P--DGSLLGVAYSKHIVQLYAYHGGSD-------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  477 (1093)
Q Consensus       407 ~--dg~~las~~~d~~i~iwd~~~~~~-------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  477 (1093)
                      |  +.+.+++|..|..|+++|+...+.       ..+...+..|..+|..++-.|++.. .+.+++.||+|+-+|+....
T Consensus       103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCc
Confidence            9  578899999999999999985211       2223345679999999999999955 79999999999999997532


Q ss_pred             -ee------EE---eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE----E-ecCCCCceEEEE-EccC
Q 001352          478 -RT------YS---FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----D-YDAPGLGCTRMA-YSAN  541 (1093)
Q Consensus       478 -~~------~~---~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~-~~~~~~~v~~~~-~s~d  541 (1093)
                       +.      ..   +...--...++.++|.. ..+|+.|+.|-..++||.+......    . ...+.....|+. |+|.
T Consensus       182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~  260 (758)
T KOG1310|consen  182 VCNPDEDCPSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG  260 (758)
T ss_pred             cCCccccccHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence             11      11   11111234567777664 3699999999999999964321111    0 011111222222 2222


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001352          542 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  617 (1093)
Q Consensus       542 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  617 (1093)
                      +-    ..              ..|.....       -..++.++|+|+|.-+++.-....|+++|+..++....+
T Consensus       261 hl----kn--------------~~gn~~~~-------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  261 HL----KN--------------SQGNLDRY-------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             cc----cC--------------cccccccc-------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            21    00              00111000       023677899999988888666678999999987765544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.58  E-value=5.2e-09  Score=127.14  Aligned_cols=539  Identities=10%  Similarity=0.103  Sum_probs=300.5

Q ss_pred             CCCCCeEEEEECCCCCEEEEEEcCCEEEEE----EccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEE
Q 001352          395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  470 (1093)
Q Consensus       395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iw----d~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  470 (1093)
                      ...+.|.++.|-+|..-|+.+..+|.|.+.    +..+.. +.   ....-...|.+++||||+.  +|+....++++.+
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~  146 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL  146 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence            355789999999999999999999999999    444432 11   2334567899999999999  5666665777766


Q ss_pred             EECC---------------C--------CceeEEeecCC------------------CCe----EEeeecccCCccEEEE
Q 001352          471 WDAV---------------T--------GSRTYSFEGHG------------------APV----YSLCPHAKENIHFIFS  505 (1093)
Q Consensus       471 wd~~---------------~--------~~~~~~~~~h~------------------~~v----~~~~~~~~~~~~~l~s  505 (1093)
                      -+-.               .        |+.-..|.|..                  +.+    ..+.+++.+||.++++
T Consensus       147 mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAV  226 (928)
T PF04762_consen  147 MTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAV  226 (928)
T ss_pred             EeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEE
Confidence            5310               0        11111121100                  001    1233444789999998


Q ss_pred             Eec---C---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc-cc
Q 001352          506 ISV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-LQ  578 (1093)
Q Consensus       506 ~~~---d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~  578 (1093)
                      .+.   .   ..+|||+-+ +..........+--.+++|.|.|+++++.... .....|..|. ++|-....|.-.. ..
T Consensus       227 ss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~-~~~~~VvFfE-rNGLrhgeF~l~~~~~  303 (928)
T PF04762_consen  227 SSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRL-PDRHDVVFFE-RNGLRHGEFTLRFDPE  303 (928)
T ss_pred             EEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEc-CCCcEEEEEe-cCCcEeeeEecCCCCC
Confidence            875   3   469999755 33222333333344678999999999988753 3356677776 4555444444321 12


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEecCCCCCCCceEEEec-CCCEEEEEECCCeEEEEEcCCC
Q 001352          579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       579 ~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      ...|..+.|++++..|+..-.|. |.+|-..+...  .+.+..... ..+..+.|+| +...|.+.+.+|.+..++..-.
T Consensus       304 ~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~  381 (928)
T PF04762_consen  304 EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD  381 (928)
T ss_pred             CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence            36799999999999999877655 99999887653  334443322 2345699999 4556778887788877665411


Q ss_pred             ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceee---ccCccccccccCcc
Q 001352          656 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF---ARPSECQSLLLPSK  732 (1093)
Q Consensus       656 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~---~~~~~~~~~~~~~~  732 (1093)
                      .......                                 .|+..-.+..-...++.+-.+..   +.|.....+.    
T Consensus       382 v~~s~~~---------------------------------~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~----  424 (928)
T PF04762_consen  382 VSRSPGS---------------------------------SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE----  424 (928)
T ss_pred             EEecCCC---------------------------------CccCceEEEEEeCCeEEEecccccCCCchHhceEEc----
Confidence            0000000                                 01000000000112233322211   1122222222    


Q ss_pred             ccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc
Q 001352          733 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  812 (1093)
Q Consensus       733 ~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  812 (1093)
                       -...|..++|++++..+++...||.+.+|.++...............+   ...  . ......  ......+..++|.
T Consensus       425 -~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~---~~~--~-~~~~~~--~~~~~~~~~~~~~  495 (928)
T PF04762_consen  425 -LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSI---SLD--S-MDISDS--ELPLGSLRQLAWL  495 (928)
T ss_pred             -CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhc---ccc--c-cccccc--ccccccEEEEEEe
Confidence             345899999999999899999999999999766432210000000000   000  0 000000  0134567788888


Q ss_pred             cCCCEEEEEeC----CeEEEEEccCce---eEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce-eeecc
Q 001352          813 KNDAYLFSASG----GVISLYIVMTFK---TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLE  884 (1093)
Q Consensus       813 ~dg~~la~~~d----g~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~-~~~l~  884 (1093)
                      .+..+++....    ..+.++++...+   ...........+..+...+ +...++.-..+|.+...+...... +..|.
T Consensus       496 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp  574 (928)
T PF04762_consen  496 NDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFP  574 (928)
T ss_pred             CCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCC
Confidence            88877776653    458888874332   3333333445565666665 444466677899988766654322 23343


Q ss_pred             cccCCeEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEE-EEeCCeEE
Q 001352          885 GHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-LVHETHLA  961 (1093)
Q Consensus       885 ~h~~~V~~l~~s~dg--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~-~~~d~~i~  961 (1093)
                      .-...+..+.+....  ..++.-+..|.+.+   ++ .     .+.         ..++++++  .+.+|+ +.....++
T Consensus       575 ~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la---------~~~tSF~v--~~~~Ll~TT~~h~l~  634 (928)
T PF04762_consen  575 QPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA---------SNCTSFAV--TDSFLLFTTTQHTLK  634 (928)
T ss_pred             CCCcEEEEEEECCccceeEEEEECCCCEEEE---CC-E-----EEe---------cCCceEEE--EcCEEEEEecCceEE
Confidence            322223223332222  14444444554442   21 1     111         13566666  344444 46777888


Q ss_pred             EEEcCC-cceeeeeecC----CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceE
Q 001352          962 IYEAEE-LTCLKQWFPI----SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1014 (1093)
Q Consensus       962 vwd~~~-~~~~~~~~~~----h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~ 1014 (1093)
                      ..++.. ...+......    +...+..+   .-|..||++-....=.|..++-|.+.
T Consensus       635 fv~L~~~~~~l~~~~~~~~~~~de~~R~V---ERGsriVt~vp~~~~vVLQmPRGNLE  689 (928)
T PF04762_consen  635 FVHLNSSVEDLEIPPDSPENSYDERCRRV---ERGSRIVTAVPSDTSVVLQMPRGNLE  689 (928)
T ss_pred             EEECcCchhhcccccCccccccccccccC---ccCCEEEEEeCCCceEEEEcCCCchh
Confidence            888871 1111111111    11123322   46888888876666677888888775

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=1.2e-12  Score=130.16  Aligned_cols=260  Identities=12%  Similarity=0.112  Sum_probs=163.9

Q ss_pred             ccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccC
Q 001352          735 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN  814 (1093)
Q Consensus       735 ~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  814 (1093)
                      ...|++++|-|.+..-++.+-.+.|.+|..+....       ....++   ..+..+....  .+.+| .+|+++.+.+|
T Consensus       140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln-------~~r~~~---~~s~~~~qvl--~~pgh-~pVtsmqwn~d  206 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLN-------ANRNIR---MMSTHHLQVL--QDPGH-NPVTSMQWNED  206 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecceeEEEEcCcccc-------cccccc---cccccchhhe--eCCCC-ceeeEEEEcCC
Confidence            34678888888777667777777888998654321       000011   1111112222  22235 89999999999


Q ss_pred             CCEEEEEe--CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEE
Q 001352          815 DAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG  892 (1093)
Q Consensus       815 g~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~  892 (1093)
                      |..+++++  +..|.|||..++..+.-.....+.++-+.||| |+.+|.+++-|+..++|+.....-..+..--++.|+.
T Consensus       207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt  285 (445)
T KOG2139|consen  207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT  285 (445)
T ss_pred             CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence            99999998  57899999999887665545667889999999 8999999999999999965543222222224458999


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEeCCCCcee----------eeeee------ecCCCcccCCCCceEEEEccCCCEEEEEe
Q 001352          893 LVFSDALNILVSSGGDAQIFVWDVDGWGIQ----------TCRSL------QTPDGVMTLAPSETHIQFHKDQTRFLLVH  956 (1093)
Q Consensus       893 l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~----------~~~~~------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~  956 (1093)
                      .+|+|+|++|+.+.. |.=++|.+.-.+..          ....+      ....+.....+.+.+++|.|.|.+||+..
T Consensus       286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f  364 (445)
T KOG2139|consen  286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF  364 (445)
T ss_pred             eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence            999999998765543 22345554321100          00011      11111111125789999999999999953


Q ss_pred             CC---------eEEEEEcCCcceeeeeecCC--CCCEEEEEEcc---CCCEEEEEeCCCcEEEEEcC
Q 001352          957 ET---------HLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus       957 d~---------~i~vwd~~~~~~~~~~~~~h--~~~v~~~~fs~---dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
                      .+         .|.+||....-.+...+.+-  ......+.|+|   +|.+|..+=..|.+.-|++.
T Consensus       365 Kg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  365 KGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             cCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            22         36677766544433322221  22345567766   66777777667777766654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=4.5e-15  Score=162.49  Aligned_cols=339  Identities=18%  Similarity=0.190  Sum_probs=218.5

Q ss_pred             HHHHHHHHhHHhhhhcCCCCCCCCCCCCcceecccCCCCCCCcCCCCCCCCCCCCCCCCCCcccccC----CcccCcccc
Q 001352          171 RLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSS----SMLTDSAVS  246 (1093)
Q Consensus       171 rL~~ll~qa~~~q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~  246 (1093)
                      -|..|+-|.++.|+.+|+.|.++.+++|||..|.|++               |-+..+++-++....    .++.+.++.
T Consensus      1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPE---------------pk~~~~ap~N~t~Rl~~rel~~~y~gV~ 1078 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPE---------------PKRLLEAPLNMTGRLGTRELQSFYSGVH 1078 (1516)
T ss_pred             cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCC---------------hHHHhhcchhhhhcccchhhcCcccccc
Confidence            4999999999999999999999999999999999997               333332221111000    000000000


Q ss_pred             cccccCCCCCcccccccCCCCCCCcccCCCcccccccCCCcceecCcCCCCcCCCCCCcccccccccccCCCccCCchHH
Q 001352          247 FVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKT  326 (1093)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~fsP~~s~~~~~~~~~~~~~~~~~p~~  326 (1093)
                      +                                        -++..     -.+||           .          .+
T Consensus      1079 g----------------------------------------~~~dr-----~~IFS-----------R----------Fr 1092 (1516)
T KOG1832|consen 1079 G----------------------------------------NRRDR-----QFIFS-----------R----------FR 1092 (1516)
T ss_pred             c----------------------------------------Ccccc-----hhhHh-----------h----------cc
Confidence            0                                        00000     11221           0          12


Q ss_pred             HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      ..++++.|+..-+|++||-+.+. |++|+..|.|+++++.+|.....                   ...|+.+|+.+.=|
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs 1152 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPS 1152 (1516)
T ss_pred             cchhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCcccccc-------------------cccccccccccccc
Confidence            23567789999999999999984 99999999999999999988765                   56799999999999


Q ss_pred             CCCCEEEEEEcC--CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe-e
Q 001352          407 PDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-E  483 (1093)
Q Consensus       407 ~dg~~las~~~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~  483 (1093)
                      .||..+.+.+.-  ....+|++.+-  ....+++.    .-.++.|+....+ .+ .|..-..+.+||++|+..+.++ .
T Consensus      1153 ~dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~-r~-~gt~~d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1153 VDGSTQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF-RA-LGTEADDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred             CCcceeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH-HH-hcccccceEEEecccCcHHHHhcC
Confidence            999887766433  35789998762  22222333    2457889887553 33 3333456899999999888763 2


Q ss_pred             c---CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352          484 G---HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  560 (1093)
Q Consensus       484 ~---h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i  560 (1093)
                      +   ....-+...|+|..  .+++   .||  .+||.+..+.+..+.... ....-.|+|.|..++..+         .|
T Consensus      1225 ~~~~~~y~~n~a~FsP~D--~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS---------EI 1287 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSPCD--TLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS---------EI 1287 (1516)
T ss_pred             cchhhhhhccccccCCCc--ceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec---------hh
Confidence            2   22222455565543  3443   344  469998887666554433 122345999999998864         58


Q ss_pred             EeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe--CC---------------CcEEEEECCCCceEEEEecCCCC
Q 001352          561 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DD---------------HVIKIWDMNKVQLLTTIDAGGGL  623 (1093)
Q Consensus       561 wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~--~d---------------g~i~iwd~~~~~~~~~~~~~~~~  623 (1093)
                      ||+++.+.++......     -..+.|+..|..++..-  .|               ...+-+|...-..+.+++...  
T Consensus      1288 wD~RTF~lLh~VP~Ld-----qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R-- 1360 (1516)
T KOG1832|consen 1288 WDMRTFKLLHSVPSLD-----QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDR-- 1360 (1516)
T ss_pred             hhhHHHHHHhcCcccc-----ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeeccc--
Confidence            9999998887766544     46778888887665432  00               123445555555566665442  


Q ss_pred             CCCceEEEecCCCEEEEEEC
Q 001352          624 PENPRICFNKNGTLLAVIAN  643 (1093)
Q Consensus       624 ~~v~~v~~s~~~~~l~~~~~  643 (1093)
                       .+..+|-+|...++++...
T Consensus      1361 -~~~Dlct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1361 -CLLDLCTEPTDSFLGVIEM 1379 (1516)
T ss_pred             -chhhhhcCCccceEEEEec
Confidence             2556666776666665543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.57  E-value=1.5e-14  Score=148.01  Aligned_cols=273  Identities=18%  Similarity=0.185  Sum_probs=213.4

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  416 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~  416 (1093)
                      ....+.|+.+|++ ++.|+.-|.|-.+|+.++++..+.++                    ...|..+.|-.+.+++|++ 
T Consensus       131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v--------------------~Etv~Dv~~LHneq~~AVA-  188 (545)
T KOG1272|consen  131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINV--------------------METVRDVTFLHNEQFFAVA-  188 (545)
T ss_pred             CCeeeeecCCccE-EEecCCccceeeeecccceeeeeeeh--------------------hhhhhhhhhhcchHHHHhh-
Confidence            6788999999997 66677889999999999998876442                    3678899999999999998 


Q ss_pred             cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecc
Q 001352          417 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  496 (1093)
Q Consensus       417 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~  496 (1093)
                      ....++|||-..-+ +.   .++.| .+|..+.|.|---  +|++++..|.++--|+.+|+.+..+....+.+..++-+|
T Consensus       189 QK~y~yvYD~~GtE-lH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP  261 (545)
T KOG1272|consen  189 QKKYVYVYDNNGTE-LH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP  261 (545)
T ss_pred             hhceEEEecCCCcE-Ee---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence            45569999976532 32   34444 4689999999765  899999999999999999999999988888888888766


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc
Q 001352          497 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  576 (1093)
Q Consensus       497 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  576 (1093)
                      .+  ..+-+|...|+|.+|.....+....+..|.++|.++++.++|+++++.+.    |..+.|||++.-..+.++.. .
T Consensus       262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t-p  334 (545)
T KOG1272|consen  262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT-P  334 (545)
T ss_pred             cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec-C
Confidence            54  57889999999999999999999999999999999999999999999987    66799999998876666655 2


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCc--eEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001352          577 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  650 (1093)
Q Consensus       577 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  650 (1093)
                         .+...+++|..|  +++.+....|.||. .-.+.  .-...-.|.....|..+.|.|-...|-+|...|--.+.
T Consensus       335 ---~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil  406 (545)
T KOG1272|consen  335 ---HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL  406 (545)
T ss_pred             ---CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence               457778888655  55666666799994 22211  11111112222468899999988888887776654444

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.56  E-value=1.1e-12  Score=128.42  Aligned_cols=243  Identities=11%  Similarity=0.058  Sum_probs=169.9

Q ss_pred             CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe---eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 001352          529 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI  605 (1093)
Q Consensus       529 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~i  605 (1093)
                      ...+|++.+|++|+..++++..+    ..|.||......   ..+++..|.   ..|+.+.|+|..+.|++++.|..-++
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~----~evhiy~~~~~~~w~~~htls~Hd---~~vtgvdWap~snrIvtcs~drnayV   81 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNN----HEVHIYSMLGADLWEPAHTLSEHD---KIVTGVDWAPKSNRIVTCSHDRNAYV   81 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCC----ceEEEEEecCCCCceeceehhhhC---cceeEEeecCCCCceeEccCCCCccc
Confidence            44689999999999999998763    347777766544   556666666   89999999999999999999999999


Q ss_pred             EEC-CCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeec
Q 001352          606 WDM-NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI  684 (1093)
Q Consensus       606 wd~-~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  684 (1093)
                      |.. ..++...++..-.......++.|+|.++.+|+|+....|.||-.+........+...                   
T Consensus        82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik-------------------  142 (361)
T KOG1523|consen   82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK-------------------  142 (361)
T ss_pred             cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhC-------------------
Confidence            998 556555444433334568999999999999999999999998776543221111000                   


Q ss_pred             cCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeee
Q 001352          685 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  764 (1093)
Q Consensus       685 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~  764 (1093)
                                                                     ....+.|.++.|.|++-.+++++.|+..+++..
T Consensus       143 -----------------------------------------------kPirStv~sldWhpnnVLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  143 -----------------------------------------------KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             -----------------------------------------------CccccceeeeeccCCcceecccccCcceeEEEE
Confidence                                                           114567888899999998889999998888875


Q ss_pred             cCcccCcCcccccccCCcccCCCC--CCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCce-eEEEE
Q 001352          765 PRNDLTLSTEATTKVPPRLYQPRH--GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-TILTI  840 (1093)
Q Consensus       765 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~-~~~~~  840 (1093)
                      --...      .......-|..+.  |..+....    ...+.+..+.|+|+|..|+..+ |+.+.+-|..... .+...
T Consensus       176 yIK~V------dekpap~pWgsk~PFG~lm~E~~----~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~  245 (361)
T KOG1523|consen  176 YIKGV------DEKPAPTPWGSKMPFGQLMSEAS----SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSV  245 (361)
T ss_pred             eeecc------ccCCCCCCCccCCcHHHHHHhhc----cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccch
Confidence            32211      1111233444332  22222221    2578899999999999999887 7999998877654 33333


Q ss_pred             CCCCCCeEEEEEcC
Q 001352          841 MPPSPTATSLAFNP  854 (1093)
Q Consensus       841 ~~~~~~i~~l~~s~  854 (1093)
                      ....-+..++.|-.
T Consensus       246 ~~~~lP~ls~~~is  259 (361)
T KOG1523|consen  246 ATAQLPLLSVSWIS  259 (361)
T ss_pred             hhccCCceeeEeec
Confidence            33335566666654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.7e-12  Score=146.93  Aligned_cols=237  Identities=11%  Similarity=0.115  Sum_probs=156.6

Q ss_pred             cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc---CCEEEEEEccCCCcccce
Q 001352          359 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQ  435 (1093)
Q Consensus       359 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~---d~~i~iwd~~~~~~~~~~  435 (1093)
                      .|.+||...+....                    +..+...+.+.+|||||+.||..+.   +..|.+|++.+|+.. . 
T Consensus       180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~-  237 (429)
T PRK03629        180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q-  237 (429)
T ss_pred             eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E-
Confidence            68888887665432                    3346778999999999999997643   457999999887532 2 


Q ss_pred             EEeccccccEEEEEeeCCCCcEEEEEEcCCC--cEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecC-CeE
Q 001352          436 LEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKI  512 (1093)
Q Consensus       436 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i  512 (1093)
                        +....+.+..++|+|||+. ++++.+.++  .|.+||+.+++..+ +..+...+....|+  +||+.|+..+.+ |..
T Consensus       238 --l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wS--PDG~~I~f~s~~~g~~  311 (429)
T PRK03629        238 --VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWF--PDSQNLAYTSDQAGRP  311 (429)
T ss_pred             --ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEEC--CCCCEEEEEeCCCCCc
Confidence              2223333557899999995 233334444  58999998887654 33344556667774  567777766654 455


Q ss_pred             EEE--EcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC
Q 001352          513 KAW--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA  590 (1093)
Q Consensus       513 ~vw--d~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~  590 (1093)
                      .+|  |+..+.. ..+...........|+|||++++..+... +...|++||+.+++... +...    .......|+||
T Consensus       312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~-Lt~~----~~~~~p~~SpD  384 (429)
T PRK03629        312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQV-LTDT----FLDETPSIAPN  384 (429)
T ss_pred             eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEE-eCCC----CCCCCceECCC
Confidence            555  5554433 33333344556789999999998876432 35679999998886543 3221    12345789999


Q ss_pred             CCEEEEEeCCCc---EEEEECCCCceEEEEecCCCCCCCceEEEec
Q 001352          591 KDQILAAGDDHV---IKIWDMNKVQLLTTIDAGGGLPENPRICFNK  633 (1093)
Q Consensus       591 ~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  633 (1093)
                      |+.++.++.++.   +.++++ +|.....+..+.  ..+...+|+|
T Consensus       385 G~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp  427 (429)
T PRK03629        385 GTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP  427 (429)
T ss_pred             CCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence            999999887764   677777 455555555432  3467788876

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.56  E-value=2.3e-14  Score=146.76  Aligned_cols=270  Identities=16%  Similarity=0.170  Sum_probs=213.3

Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC
Q 001352          397 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  476 (1093)
Q Consensus       397 ~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  476 (1093)
                      ......+.++.+|++|+.|+..|.|..+|+.++....   ++. -...|.++.|..+.+  +++ ......+.||| ..|
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~A-VAQK~y~yvYD-~~G  200 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFA-VAQKKYVYVYD-NNG  200 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHH-hhhhceEEEec-CCC
Confidence            4567789999999999999999999999999987554   232 345689999998877  444 45577899999 889


Q ss_pred             ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001352          477 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  556 (1093)
Q Consensus       477 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~  556 (1093)
                      ..++.++.| ..|..+.|.|..  -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-.|..    .|
T Consensus       201 tElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nG  273 (545)
T KOG1272|consen  201 TELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NG  273 (545)
T ss_pred             cEEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cc
Confidence            999999855 457778886643  57888999999999999999999888888889999999998888877765    77


Q ss_pred             eEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC
Q 001352          557 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT  636 (1093)
Q Consensus       557 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  636 (1093)
                      +|.+|...+.+++..+..|.   ++|.++++.++|.++++++.|..++|||++....+.++...   -....+++|..| 
T Consensus       274 tVSlWSP~skePLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkg-  346 (545)
T KOG1272|consen  274 TVSLWSPNSKEPLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKG-  346 (545)
T ss_pred             eEEecCCCCcchHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCcccccccccc-
Confidence            89999999999999999988   99999999999999999999999999999988877666542   235778888766 


Q ss_pred             EEEEEECCCeEEEEEcCCC-----ceeeecccccccceeeeecCCCceeeeeccCCce
Q 001352          637 LLAVIANENRIKILETPES-----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV  689 (1093)
Q Consensus       637 ~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  689 (1093)
                      +||.+ ....+.||.-...     ....-...-...|..+.|+|....+++|-..|-.
T Consensus       347 lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~t  403 (545)
T KOG1272|consen  347 LLALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGIT  403 (545)
T ss_pred             ceeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCce
Confidence            34443 3457899963321     1111111223378899999999998887766633

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=1.7e-12  Score=127.21  Aligned_cols=239  Identities=12%  Similarity=0.160  Sum_probs=167.0

Q ss_pred             CCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCC--CeEEEEEcCCCCCEEE-EEeCC------CeEEEEEc
Q 001352          804 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP--TATSLAFNPHDNNVIA-IGMDD------STILIYNA  874 (1093)
Q Consensus       804 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~d~~~la-sg~~d------g~i~iwd~  874 (1093)
                      ....+++|..|...++++.+...+||+.+-.+.......+..  .+..+-|-   .++|| +|+.+      ..|.|||=
T Consensus         6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence            345569999999999999998999999876444332222222  33333443   23444 34433      48999996


Q ss_pred             CCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccC--CCEE
Q 001352          875 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD--QTRF  952 (1093)
Q Consensus       875 ~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l  952 (1093)
                      ...+++..+. ...+|.++.+++|  .+++.- .+.|.||.....-.. ...+.+.....    +  -++..|.  -.+|
T Consensus        83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~-l~~~et~~NPk----G--lC~~~~~~~k~~L  151 (346)
T KOG2111|consen   83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL-LHVIETRSNPK----G--LCSLCPTSNKSLL  151 (346)
T ss_pred             ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh-eeeeecccCCC----c--eEeecCCCCceEE
Confidence            6677777776 6788999999876  455543 566999999853211 11222221111    1  2334443  3344


Q ss_pred             EE-E-eCCeEEEEEcCCcce-eeeeecCCCCCEEEEEEccCCCEEEEEeCCCc-EEEEEcCCCceEEEeccccccCCCCC
Q 001352          953 LL-V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTS 1028 (1093)
Q Consensus       953 ~~-~-~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~ 1028 (1093)
                      |. | .-|.|+|-|+...+. ......+|...|.+++.+-+|.++||+|..|+ |||||..+|..+..++....      
T Consensus       152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d------  225 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD------  225 (346)
T ss_pred             EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc------
Confidence            44 4 458999999987665 33457789999999999999999999999998 89999999999999873321      


Q ss_pred             CCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCC
Q 001352         1029 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1065 (1093)
Q Consensus      1029 ~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1065 (1093)
                      ...|  .|++||| +..+||++++-|+|++|.+.+..
T Consensus       226 ~A~i--y~iaFSp-~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  226 RADI--YCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             hheE--EEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence            1224  4889999 58999999999999999997654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=2.3e-12  Score=147.13  Aligned_cols=237  Identities=13%  Similarity=0.060  Sum_probs=161.1

Q ss_pred             CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc---CCEEEEEEccCCCcccc
Q 001352          358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ  434 (1093)
Q Consensus       358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~---d~~i~iwd~~~~~~~~~  434 (1093)
                      ..|.+||..++....                    +..|...+.+.+|||||+.|+..+.   +..|.+||+.+++..  
T Consensus       182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--  239 (435)
T PRK05137        182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--  239 (435)
T ss_pred             eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence            378888886554332                    5568889999999999999998864   468999999987532  


Q ss_pred             eEEeccccccEEEEEeeCCCCcEEEEEEcCCCc--EEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEec-CC-
Q 001352          435 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG-  510 (1093)
Q Consensus       435 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg-  510 (1093)
                        .+..+.+.+...+|+|||+. ++++.+.++.  |.+||+.+++. ..+..+........|+  +||+.|+..+. +| 
T Consensus       240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~  313 (435)
T PRK05137        240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGS  313 (435)
T ss_pred             --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCC
Confidence              34456677889999999995 3456666655  77779888765 4455566556666774  56777776653 33 


Q ss_pred             -eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC
Q 001352          511 -KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  589 (1093)
Q Consensus       511 -~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~  589 (1093)
                       .|.++|+....... +......+....|+|||+.++...... +...|.+||+.++.. +.+.. .   ..+....|+|
T Consensus       314 ~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~sp  386 (435)
T PRK05137        314 PQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAP  386 (435)
T ss_pred             CeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCce-EeccC-C---CCCCCCeECC
Confidence             57777876554433 333344566788999999999876432 356799999866543 33322 1   2456789999


Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCceEEEEecCCCCCCCceEEEec
Q 001352          590 AKDQILAAGDD------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  633 (1093)
Q Consensus       590 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  633 (1093)
                      ||+.|+..+.+      ..++++|+.++.. ..+...   ..+...+|+|
T Consensus       387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~---~~~~~p~Wsp  432 (435)
T PRK05137        387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP---GDASDPAWSP  432 (435)
T ss_pred             CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCC---CCccCcccCC
Confidence            99998775532      3588888876554 344322   1356667776

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=3e-12  Score=145.91  Aligned_cols=238  Identities=16%  Similarity=0.120  Sum_probs=157.5

Q ss_pred             CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc---CCEEEEEEccCCCcccc
Q 001352          358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ  434 (1093)
Q Consensus       358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~---d~~i~iwd~~~~~~~~~  434 (1093)
                      ..|.+||...+....                    +..|...+.+.+|||||+.|+.++.   +..|.+||+.+++..  
T Consensus       184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--  241 (433)
T PRK04922        184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--  241 (433)
T ss_pred             EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence            468899986554322                    4457788999999999999998864   346999999887632  


Q ss_pred             eEEeccccccEEEEEeeCCCCcEEEEEEcCCC--cEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEec-CCe
Q 001352          435 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK  511 (1093)
Q Consensus       435 ~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~  511 (1093)
                        .+..+.+...+++|+|||+. ++++.+.++  .|.+||+.+++.. .+..+.......+|+  +||+.|+..+. +|.
T Consensus       242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~  315 (433)
T PRK04922        242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWA--PDGKSIYFTSDRGGR  315 (433)
T ss_pred             --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEEC--CCCCEEEEEECCCCC
Confidence              23344445568899999995 334555555  5999999888753 455555555666774  56777776654 455


Q ss_pred             --EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC
Q 001352          512 --IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  589 (1093)
Q Consensus       512 --i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~  589 (1093)
                        |.++++.+++... +..........+|+|||++++..... ++...|.+||+.+++......+     .......|+|
T Consensus       316 ~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~~Lt~~-----~~~~~p~~sp  388 (433)
T PRK04922        316 PQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVRTLTPG-----SLDESPSFAP  388 (433)
T ss_pred             ceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeEECCCC-----CCCCCceECC
Confidence              5556665544332 22233344568999999999887642 2355799999988876533222     1234568999


Q ss_pred             CCCEEEEEeC---CCcEEEEECCCCceEEEEecCCCCCCCceEEEec
Q 001352          590 AKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  633 (1093)
Q Consensus       590 ~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  633 (1093)
                      ||++++..+.   .+.|+++++.. .....+..+.  ..+...+|+|
T Consensus       389 dG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp  432 (433)
T PRK04922        389 NGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP  432 (433)
T ss_pred             CCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence            9999887664   34688888854 4444444322  2356677776

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.51  E-value=1.4e-09  Score=112.22  Aligned_cols=522  Identities=14%  Similarity=0.126  Sum_probs=274.4

Q ss_pred             HhhccCCCCceeeeecCCCceEEEE----Ec--cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEE
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLV----GT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  402 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llas----g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  402 (1093)
                      +.+..|-+-|+...|+|||+.++.+    |+  ..+.+.+.+.+.|+..+..-                 + |  ..-+.
T Consensus        72 ~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTy-----------------f-G--r~fT~  131 (668)
T COG4946          72 LRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITY-----------------F-G--RRFTR  131 (668)
T ss_pred             eEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEE-----------------e-c--cccce
Confidence            4556677789999999999974442    22  23558888888888765311                 1 2  33333


Q ss_pred             -EEECCCCCEEEEEEcCCE----EEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-----------C
Q 001352          403 -VVWSPDGSLLGVAYSKHI----VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----------K  466 (1093)
Q Consensus       403 -v~~s~dg~~las~~~d~~----i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----------~  466 (1093)
                       .-|+|||+.|++...-.-    -.+|.++....-..  .  -.-++.+.+.+- ||.   ++.|-.-           |
T Consensus       132 VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e--~--LnlGpathiv~~-dg~---ivigRntydLP~WK~YkGG  203 (668)
T COG4946         132 VAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE--P--LNLGPATHIVIK-DGI---IVIGRNTYDLPHWKGYKGG  203 (668)
T ss_pred             eeccCCCCCEEEEeccCCCcccceeeeEEccCCceee--e--ccCCceeeEEEe-CCE---EEEccCcccCcccccccCC
Confidence             459999999988744321    23444433211000  1  123445555543 332   3333211           0


Q ss_pred             -cEEEEECC-CCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001352          467 -TIKVWDAV-TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  544 (1093)
Q Consensus       467 -~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~  544 (1093)
                       .=++|--. .|+....+-.-.+.|.+-.+.   .++.-+....+|.=.+|..+-...-..-...-....+=..+.||+.
T Consensus       204 trGklWis~d~g~tFeK~vdl~~~vS~PmIV---~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkr  280 (668)
T COG4946         204 TRGKLWISSDGGKTFEKFVDLDGNVSSPMIV---GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKR  280 (668)
T ss_pred             ccceEEEEecCCcceeeeeecCCCcCCceEE---cceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcE
Confidence             12455332 232322222222222221110   1122223344444444433221111110011112233345679999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeeeeeeeccccc---C-----CCeEEEE-EcC-CCCEEEEEeCCCcEEEEECCCCceE
Q 001352          545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ---H-----NSVSVVH-FDT-AKDQILAAGDDHVIKIWDMNKVQLL  614 (1093)
Q Consensus       545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~---~-----~~v~~v~-~~~-~~~~l~~~~~dg~i~iwd~~~~~~~  614 (1093)
                      ++...     .+.|++||..+..+.+.--+....   .     .+..-+. |++ +|.+++..|. |...|.+...+-.+
T Consensus       281 IvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i  354 (668)
T COG4946         281 IVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSI  354 (668)
T ss_pred             EEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeE
Confidence            88754     334999999876654332221100   0     0111111 222 4666666664 66677666555444


Q ss_pred             EEEecCCCCCCCceEEEecCCCEEEEEECCC-eEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecC
Q 001352          615 TTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  693 (1093)
Q Consensus       615 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1093)
                      +.-.    ...|.-..+.-+++-++.|..|| .+-|++..++..-...                                
T Consensus       355 qv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e--------------------------------  398 (668)
T COG4946         355 QVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE--------------------------------  398 (668)
T ss_pred             EcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee--------------------------------
Confidence            3321    23466677777777888999988 8889988766322111                                


Q ss_pred             CCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCc
Q 001352          694 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST  773 (1093)
Q Consensus       694 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~  773 (1093)
                                                             ..-+.|.++..+++|+.++++.....+.+.|++....    
T Consensus       399 ---------------------------------------~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv----  435 (668)
T COG4946         399 ---------------------------------------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV----  435 (668)
T ss_pred             ---------------------------------------CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe----
Confidence                                                   1335688899999999888887777777766654321    


Q ss_pred             ccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-C----CeEEEEEccCceeEEEECCCCCCeE
Q 001352          774 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G----GVISLYIVMTFKTILTIMPPSPTAT  848 (1093)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-d----g~i~iwd~~~~~~~~~~~~~~~~i~  848 (1093)
                                        .+.-    .....-|+.++|+|+++++|.+- +    ..|+++|+.+++....-. ....-.
T Consensus       436 ------------------~~id----kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~Df  492 (668)
T COG4946         436 ------------------RLID----KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDF  492 (668)
T ss_pred             ------------------eEec----ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cccccc
Confidence                              1111    12567789999999999999986 3    459999999887765443 444556


Q ss_pred             EEEEcCCCCCEEEEEeCCCeEEEEEcCCcceee--ecccccCCeEEE----EEeCCCCEEEE-EeCCCcEEEEeCCCCce
Q 001352          849 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS--KLEGHSKRVTGL----VFSDALNILVS-SGGDAQIFVWDVDGWGI  921 (1093)
Q Consensus       849 ~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~--~l~~h~~~V~~l----~~s~dg~~l~s-~s~dg~i~iwd~~~~~~  921 (1093)
                      +-+|.| |+++|.--+...    .|..+.+.+-  .+..|+.+-..+    ..||-.+..-. -+.++.+-+=++...  
T Consensus       493 sPaFD~-d~ryLYfLs~Rs----LdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r--  565 (668)
T COG4946         493 SPAFDP-DGRYLYFLSARS----LDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDR--  565 (668)
T ss_pred             CcccCC-CCcEEEEEeccc----cCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhccc--
Confidence            778999 899887655321    1111111111  111122221111    01222222111 123333322222220  


Q ss_pred             eeeeeeecCCCcccCCCCceEEEEccCCCEEEE-------------E--eCCeEEEEEcCCcceeeeeecCCCCCEEEEE
Q 001352          922 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-------------V--HETHLAIYEAEELTCLKQWFPISSVPISQAT  986 (1093)
Q Consensus       922 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-------------~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~  986 (1093)
                        ..++...++.      -.+++=-.+|+.+.-             +  .-|.+.+||+++.+.-..     ...++++.
T Consensus       566 --~eP~pVee~d------Y~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~-----k~nvss~r  632 (668)
T COG4946         566 --VEPFPVEEGD------YRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY-----KDNVSSFR  632 (668)
T ss_pred             --ccccccCccc------eeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHH-----hcccceEE
Confidence              0111111111      222333334433321             1  236788999887654321     34689999


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcCC
Q 001352          987 FSCDCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus       987 fs~dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
                      .|+||+.++. -.||.+++++++.
T Consensus       633 lS~D~s~ilv-k~d~kl~~f~vek  655 (668)
T COG4946         633 LSSDGSKILV-KLDGKLRLFDVEK  655 (668)
T ss_pred             EcCCCCEEEE-EeCCeEEEEeccc
Confidence            9999999988 6799999999976

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.50  E-value=3.4e-10  Score=124.57  Aligned_cols=208  Identities=13%  Similarity=0.183  Sum_probs=135.4

Q ss_pred             eeEEEEccCCCEEEEEe--CCeEEEEEccC-ceeEEE---EC----------CCCCCeEEEEEcCCCCCEEEEEeC-CCe
Q 001352          806 VPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---IM----------PPSPTATSLAFNPHDNNVIAIGMD-DST  868 (1093)
Q Consensus       806 v~~l~~s~dg~~la~~~--dg~i~iwd~~~-~~~~~~---~~----------~~~~~i~~l~~s~~d~~~lasg~~-dg~  868 (1093)
                      ...++++|++++|+++.  +|.+.++++.. |.....   +.          .......++.|+| +++++++... ...
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~  167 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADR  167 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTE
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCE
Confidence            44678888888888886  58888888875 433222   11          1234678999999 8887777653 348


Q ss_pred             EEEEEcCCcc--ee--eecc-cccCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCC--CCceeeeeeeecCCCcccCCCCc
Q 001352          869 ILIYNARSSE--VI--SKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSE  940 (1093)
Q Consensus       869 i~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~dg~~l~s~s-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v  940 (1093)
                      |.+|++....  +.  ..+. ......+.++|+||++++.... .+++|.++++.  .+.......+.............
T Consensus       168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  247 (345)
T PF10282_consen  168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP  247 (345)
T ss_dssp             EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred             EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence            9999997654  31  2222 2345578899999999886654 57889999998  55443433343332211111257


Q ss_pred             eEEEEccCCCEEEEE--eCCeEEEEEcC--Ccce--eeeeecCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEc--CCC
Q 001352          941 THIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SNL 1011 (1093)
Q Consensus       941 ~~~~~s~dg~~l~~~--~d~~i~vwd~~--~~~~--~~~~~~~h~~~v~~~~fs~dg~~l~t~~-~dg~v~vwd~--~~~ 1011 (1093)
                      ..++++|||++|.++  ..+.|.+|++.  +|..  +..+. ........++|+|||++|+++. .++.|.+|++  .+|
T Consensus       248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG  326 (345)
T PF10282_consen  248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG  326 (345)
T ss_dssp             EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence            889999999999996  45689999993  3433  22222 2244588999999999999887 4568999876  466


Q ss_pred             ceEE
Q 001352         1012 EVQC 1015 (1093)
Q Consensus      1012 ~~~~ 1015 (1093)
                      .+..
T Consensus       327 ~l~~  330 (345)
T PF10282_consen  327 KLTP  330 (345)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            6543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.8e-12  Score=146.64  Aligned_cols=225  Identities=14%  Similarity=0.101  Sum_probs=148.5

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEc--cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      +.+..+.+.+...+|||||++++.+..  .+..|.+||+.+|+...                    +....+.+..++||
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~S  251 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFS  251 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEEC
Confidence            445556678999999999997554432  24579999999886543                    11223345568999


Q ss_pred             CCCCEEEEE-EcCC--EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC-CCc--EEEEECCCCceeE
Q 001352          407 PDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKT--IKVWDAVTGSRTY  480 (1093)
Q Consensus       407 ~dg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~--i~vwd~~~~~~~~  480 (1093)
                      |||++|+.. +.++  .|.+||+.+++..    .+..+...+...+|+|||+.  |+..+. ++.  |.++|+.+++. .
T Consensus       252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~-~  324 (429)
T PRK03629        252 PDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAP-Q  324 (429)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCe-E
Confidence            999999876 3344  5999999887532    34445556789999999994  544443 444  44557766654 3


Q ss_pred             EeecCCCCeEEeeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001352          481 SFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  557 (1093)
Q Consensus       481 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~  557 (1093)
                      .+..+........|  ++||++|+..+.+   ..|.+||+.++.... +.. ........|+|||+.++..+.++. ...
T Consensus       325 ~lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~-~~~  399 (429)
T PRK03629        325 RITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGM-GSV  399 (429)
T ss_pred             EeecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCC-ceE
Confidence            44334444455666  4577777776543   358888988765433 222 223346789999999999886443 456


Q ss_pred             EEEEeCCCCeeeeeeecccccCCCeEEEEEcC
Q 001352          558 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  589 (1093)
Q Consensus       558 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~  589 (1093)
                      ++++++ +|...+.+.++.   +.+...+|+|
T Consensus       400 l~~~~~-~G~~~~~l~~~~---~~~~~p~Wsp  427 (429)
T PRK03629        400 LNLVST-DGRFKARLPATD---GQVKFPAWSP  427 (429)
T ss_pred             EEEEEC-CCCCeEECccCC---CCcCCcccCC
Confidence            888887 455556666655   6677788887

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=1.8e-10  Score=124.36  Aligned_cols=558  Identities=9%  Similarity=0.074  Sum_probs=318.6

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  416 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~  416 (1093)
                      ...|++|+....| +|+|+.||.++|-.+.+...-....    .+.......-...+.||++.|.-+.|+.+.+.|-+..
T Consensus        16 kL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD   90 (1189)
T KOG2041|consen   16 KLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD   90 (1189)
T ss_pred             eEEEEEEcccCCe-EEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence            7889999999885 9999999999999987644321100    0011112222335899999999999999999999999


Q ss_pred             cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee-EEeecCCCCeEEeeec
Q 001352          417 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH  495 (1093)
Q Consensus       417 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~  495 (1093)
                      .+|.|.||-+-.|.-.... .-.....-|.+++|..||.  .++..-.||.|.|=.++..+.- +.+++.  ....+.| 
T Consensus        91 t~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~w-  164 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLW-  164 (1189)
T ss_pred             CCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccceee-
Confidence            9999999999888654432 1234566799999999999  6777888888877665433221 122221  1123445 


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCC-------ceE----EecCCCCceEEEEE--------ccCCCEEEEEecCCCCce
Q 001352          496 AKENIHFIFSISVDGKIKAWLYDSLG-------ARV----DYDAPGLGCTRMAY--------SANGRRLFSCGTSKEGES  556 (1093)
Q Consensus       496 ~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~----~~~~~~~~v~~~~~--------s~d~~~l~~~~~~~~~~~  556 (1093)
                       ++|.+.++.+-..|.++++|.+..-       +..    .+...+..+..+.|        -||...++++..    +|
T Consensus       165 -s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----nG  239 (1189)
T KOG2041|consen  165 -SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----NG  239 (1189)
T ss_pred             -cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----Cc
Confidence             4466677778888999999875321       101    11111223444444        247778888875    44


Q ss_pred             eEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceEEEEecCCCCCCC
Q 001352          557 FLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGGLPEN  626 (1093)
Q Consensus       557 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v  626 (1093)
                      .+.+..-.+ ..++-.-.+     ..+....|+++|..+++++.+         +.|.+|.. -|..+.++...+.  .|
T Consensus       240 r~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~I  311 (1189)
T KOG2041|consen  240 RMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CI  311 (1189)
T ss_pred             eehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--ee
Confidence            455543332 233322222     357888999999999998743         24555543 4677777776544  58


Q ss_pred             ceEEEecCCCEEEEEECCCeEEEEEcCCC--------ceeeecccccccceeeeecCCC---ceeeeeccCCceEecCCC
Q 001352          627 PRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPIS---TVTGAGIANGSVSVNEDP  695 (1093)
Q Consensus       627 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~--------~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~  695 (1093)
                      ++++|-..|-.++.+- |+.|.+=+++..        ..+........+..++.|....   ..+-.....-.+++    
T Consensus       312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~----  386 (1189)
T KOG2041|consen  312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAF----  386 (1189)
T ss_pred             eeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehhe----
Confidence            8999988777776654 466665554432        2233333444444444443111   00000111111111    


Q ss_pred             CCCCccceeecccccceecc-eeecc----CccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccC
Q 001352          696 KEDVKPEISVEAENKSEVEK-PLFAR----PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT  770 (1093)
Q Consensus       696 s~d~~~l~s~~~d~~i~~w~-~~~~~----~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~  770 (1093)
                      ..+--.++.-..++.+.-+. ++...    ...|..+..+....-..|.-.-..-++..++.++.+ .+.+|.+...+..
T Consensus       387 ~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~  465 (1189)
T KOG2041|consen  387 YREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFN  465 (1189)
T ss_pred             ecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchh
Confidence            12222233333333333221 00000    001122222221122233333334456655555555 6788887654431


Q ss_pred             cCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEE
Q 001352          771 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL  850 (1093)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l  850 (1093)
                      ..-.              +   ...      +...-..+.-.|.|     +-|+++   +..    ..++.+...+|.++
T Consensus       466 s~l~--------------~---~k~------rkegr~h~Ddtp~g-----a~d~~l---~ys----~kt~~G~~DpICAl  510 (1189)
T KOG2041|consen  466 SVLA--------------G---VKI------RKEGRFHGDDTPEG-----AQDRTL---EYS----TKTLLGSKDPICAL  510 (1189)
T ss_pred             hhhh--------------h---hhh------cccccccCCCCccc-----hhhcee---ecc----ceeeccCCCcceee
Confidence            1000              0   000      00000011111222     012221   111    34566778899999


Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-ceeeeeeeec
Q 001352          851 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW-GIQTCRSLQT  929 (1093)
Q Consensus       851 ~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~  929 (1093)
                      +.+.   ++|.++-..|.|.-|++.+........ -+..|..++..-+...+|....-|.+.+.|+.-. .......+..
T Consensus       511 ~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~  586 (1189)
T KOG2041|consen  511 CISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYT  586 (1189)
T ss_pred             eecc---eEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeeh
Confidence            9963   689999999999999999877666554 4566889999888889999888899999888721 1111111222


Q ss_pred             CCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCc
Q 001352          930 PDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL  968 (1093)
Q Consensus       930 ~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~  968 (1093)
                      .+.     ..|..+.|..|+..+++ -....++|++-.+.
T Consensus       587 ~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrgndp  621 (1189)
T KOG2041|consen  587 SER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRGNDP  621 (1189)
T ss_pred             hhh-----hhhhhhhhccCCchHHhhhhhceEEEecCcCc
Confidence            211     25889999999887776 44456788775543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=4.3e-12  Score=143.90  Aligned_cols=223  Identities=14%  Similarity=0.100  Sum_probs=145.9

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcC---CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  469 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  469 (1093)
                      +..+...+.+.+|||||+.|+..+.+   ..|.+||+.+++...    +....+.+.+.+|+|||+. ++++.+.++...
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~  265 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ  265 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence            44577889999999999999988643   469999999886432    3334455678999999995 344667788766


Q ss_pred             EEE--CCCCceeEEeecCCCCeEEeeecccCCccEEEEEec-CCeEEEEEcC--CCCceEEecCCCCceEEEEEccCCCE
Q 001352          470 VWD--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVDYDAPGLGCTRMAYSANGRR  544 (1093)
Q Consensus       470 vwd--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~s~d~~~  544 (1093)
                      ||.  +.++. ...+..+........|+  +||+.|+..+. +|...+|.++  .+.. ..+...........|+|||++
T Consensus       266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~  341 (427)
T PRK02889        266 IYTVNADGSG-LRRLTQSSGIDTEPFFS--PDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKL  341 (427)
T ss_pred             EEEEECCCCC-cEECCCCCCCCcCeEEc--CCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCE
Confidence            664  44444 55565565555666774  56777766554 5667777654  3332 222222333446789999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceEEEEecCC
Q 001352          545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGG  621 (1093)
Q Consensus       545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~  621 (1093)
                      ++..+..+ +...|.+||+.+++......+     .......|+||++.|+.++.++   .+++.+. ++.....+..+.
T Consensus       342 Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~  414 (427)
T PRK02889        342 LAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG  414 (427)
T ss_pred             EEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence            99776432 245799999998876543322     1235678999999998876544   3555566 455555554332


Q ss_pred             CCCCCceEEEec
Q 001352          622 GLPENPRICFNK  633 (1093)
Q Consensus       622 ~~~~v~~v~~s~  633 (1093)
                        ..+...+|+|
T Consensus       415 --g~~~~p~wsp  424 (427)
T PRK02889        415 --GDVREPSWGP  424 (427)
T ss_pred             --CCCCCCccCC
Confidence              2356677776

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.49  E-value=2.5e-12  Score=134.42  Aligned_cols=252  Identities=10%  Similarity=0.130  Sum_probs=166.6

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE-----CCCCCE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-----SPDGSL  411 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-----s~dg~~  411 (1093)
                      .+....++-.|++|+.--  ...+.+|+...+..+..             ++.+..+.+  ....|-+|     .|.+--
T Consensus       125 ~~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~-------------pi~k~~y~g--t~P~cHdfn~~~a~~~g~d  187 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSK-------------PIDKREYKG--TSPTCHDFNSFTATPKGLD  187 (636)
T ss_pred             ceeeccccCCCCEEEEec--CCeEEEEEccCcchhcc-------------chhhhcccC--CCCceecccccccCCCCcc
Confidence            445556666777755543  35688998886544431             112222222  23344444     356778


Q ss_pred             EEEEEcCCEEEEEEccCCCcccceEEec--cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCe
Q 001352          412 LGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  489 (1093)
Q Consensus       412 las~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v  489 (1093)
                      |..|-..|.|.+.|....+ +..+....  -....|+|+.|-|.+.. .++.+-.+|.+.++|..          +....
T Consensus       188 llIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~~  255 (636)
T KOG2394|consen  188 LLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCGA  255 (636)
T ss_pred             eEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------ccccC
Confidence            8889888999999877632 22111111  23468999999998776 56667779999999851          11112


Q ss_pred             EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeee
Q 001352          490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  569 (1093)
Q Consensus       490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~  569 (1093)
                      +..++....++..+.....-+.      .+...+..+....+.|...+|+|||++||+.+.    |++++|+|..+.+++
T Consensus       256 t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLl  325 (636)
T KOG2394|consen  256 TAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELL  325 (636)
T ss_pred             CCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHH
Confidence            2222222223223322211100      111233333444558899999999999999987    889999999999988


Q ss_pred             eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352          570 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       570 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  632 (1093)
                      ..++..-   +...|++|+|||++|++|++|.-|.||.+..++.+..-.  ++...|..|+|.
T Consensus       326 g~mkSYF---GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHkSWVs~VaFD  383 (636)
T KOG2394|consen  326 GVMKSYF---GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHKSWVSVVAFD  383 (636)
T ss_pred             HHHHhhc---cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc--ccccceeeEeec
Confidence            8877766   789999999999999999999999999999988887655  446678888887

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=2.4e-12  Score=146.63  Aligned_cols=227  Identities=15%  Similarity=0.148  Sum_probs=148.4

Q ss_pred             HHHhhccCCCCceeeeecCCCceEEEEEcc--CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352          327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  404 (1093)
Q Consensus       327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  404 (1093)
                      ..+.+..|...+.+.+|||||++++.+...  ...|.+||+.+|+...                    +..+.+...+++
T Consensus       195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~  254 (433)
T PRK04922        195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPS  254 (433)
T ss_pred             CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCce
Confidence            344566677789999999999974444322  3469999999887543                    223344556789


Q ss_pred             ECCCCCEEEEE-EcCC--EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEc-CCCc--EEEEECCCCce
Q 001352          405 WSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKVWDAVTGSR  478 (1093)
Q Consensus       405 ~s~dg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d~~--i~vwd~~~~~~  478 (1093)
                      |||||+.|+.. +.++  .|.+||+.+++..    .+..+.......+|+|||++  ++..+ .++.  |.++|+.+++.
T Consensus       255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~  328 (433)
T PRK04922        255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSA  328 (433)
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCe
Confidence            99999988754 4444  6999999887632    34456556678899999994  44443 4454  66677777764


Q ss_pred             eEEeecCCCCeEEeeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001352          479 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  555 (1093)
Q Consensus       479 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~  555 (1093)
                      .. +..+.......+|+  +||++|+..+.++   .|.+||+.++... .+. +........|+|||++++..+.. .+.
T Consensus       329 ~~-lt~~g~~~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~-~g~  402 (433)
T PRK04922        329 ER-LTFQGNYNARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE-GGR  402 (433)
T ss_pred             EE-eecCCCCccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec-CCc
Confidence            33 32233334456664  5677777665443   5899998776654 332 22234567999999999887654 346


Q ss_pred             eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC
Q 001352          556 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  589 (1093)
Q Consensus       556 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~  589 (1093)
                      ..|++++...+ ..+.+..+.   +.+...+|+|
T Consensus       403 ~~L~~~~~~g~-~~~~l~~~~---g~~~~p~wsp  432 (433)
T PRK04922        403 GVLAAVSTDGR-VRQRLVSAD---GEVREPAWSP  432 (433)
T ss_pred             eEEEEEECCCC-ceEEcccCC---CCCCCCccCC
Confidence            67999998544 444444333   4556666765

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.48  E-value=9.4e-11  Score=122.41  Aligned_cols=365  Identities=12%  Similarity=0.158  Sum_probs=226.2

Q ss_pred             EEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCE
Q 001352          514 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ  593 (1093)
Q Consensus       514 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~  593 (1093)
                      +|...+......+....-++..+++||.|.+|++...     ..|.+|....+..+..+..     ..|..+.|+|++++
T Consensus        16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~-----~~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~kY   85 (561)
T COG5354          16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHA-----AGVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEKY   85 (561)
T ss_pred             eecCccccccccccccCcchhheeecCcchheehhhc-----cceEEccccchhheeeeec-----CCceecccCcccce
Confidence            3544444444445546668889999999999998764     2399999888776655554     45999999999999


Q ss_pred             EEEEeCCC---------------cEEEEECCCCceEEEEecCCCCCCCc-eEEEecCCCEEEEEECCCeEEEEEcCCCce
Q 001352          594 ILAAGDDH---------------VIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPESNS  657 (1093)
Q Consensus       594 l~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~  657 (1093)
                      |.+-+..+               .+.+||..+|..+..+.......... -+.|+-+.+++|-. ....+.|+++...-.
T Consensus        86 L~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~  164 (561)
T COG5354          86 LVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIE  164 (561)
T ss_pred             eeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccc
Confidence            99865433               49999999999999887654432233 68899888877765 345789998632211


Q ss_pred             eeeccc-ccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCcccccc
Q 001352          658 VDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN  736 (1093)
Q Consensus       658 ~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  736 (1093)
                      ...+.. ....+....++|.+..                             ..+..                       
T Consensus       165 ~~p~~~lr~~gi~dFsisP~~n~-----------------------------~~la~-----------------------  192 (561)
T COG5354         165 EHPFKNLRPVGILDFSISPEGNH-----------------------------DELAY-----------------------  192 (561)
T ss_pred             cCchhhccccceeeEEecCCCCC-----------------------------ceEEE-----------------------
Confidence            111110 1122333333321100                             00011                       


Q ss_pred             ceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCC
Q 001352          737 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  816 (1093)
Q Consensus       737 ~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  816 (1093)
                            |.|..     .+..+.+++|.++.++.                      +.+..+    ....-..+.|.+.|.
T Consensus       193 ------~tPEk-----~~kpa~~~i~sIp~~s~----------------------l~tk~l----fk~~~~qLkW~~~g~  235 (561)
T COG5354         193 ------WTPEK-----LNKPAMVRILSIPKNSV----------------------LVTKNL----FKVSGVQLKWQVLGK  235 (561)
T ss_pred             ------Ecccc-----CCCCcEEEEEEccCCCe----------------------eeeeee----EeecccEEEEecCCc
Confidence                  11110     12345666666654322                      111111    011112345555565


Q ss_pred             EEEEEe------------CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEE--EeCCCeEEEEEcCCcceeee
Q 001352          817 YLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI--GMDDSTILIYNARSSEVISK  882 (1093)
Q Consensus       817 ~la~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las--g~~dg~i~iwd~~~~~~~~~  882 (1093)
                      ++++--            ...+.|+++... .+.......++|...+|.| .++.+++  |..+-.+.++|++.. +...
T Consensus       236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~  312 (561)
T COG5354         236 YLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRFY  312 (561)
T ss_pred             eEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecc-cCCceeEEecccccceeecccccc-eEEe
Confidence            554321            245888888733 3333335678999999999 5554444  357789999999854 4433


Q ss_pred             cccccCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE----
Q 001352          883 LEGHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----  955 (1093)
Q Consensus       883 l~~h~~~V~~l~~s~dg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~----  955 (1093)
                      +.  ..+=..+.|||.+++++.++-|   |.+.+||..+.-    .++....+.     ..+.+.|||||.++.+.    
T Consensus       313 ~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~-----n~s~~~wspd~qF~~~~~ts~  381 (561)
T COG5354         313 FP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGL-----NTSYCDWSPDGQFYDTDTTSE  381 (561)
T ss_pred             cC--CcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecC-----CceEeeccCCceEEEecCCCc
Confidence            33  3334568899999999998876   569999998743    222222221     35678899999999873    


Q ss_pred             ---eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCC
Q 001352          956 ---HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1001 (1093)
Q Consensus       956 ---~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg 1001 (1093)
                         .|..+.|||+......         ..+.+.|.|.|++..|.+.+.
T Consensus       382 k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         382 KLRVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             ccccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence               3678999998643322         456678889898888777665

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=2.5e-12  Score=145.88  Aligned_cols=228  Identities=19%  Similarity=0.196  Sum_probs=146.3

Q ss_pred             HHhhccCCCCceeeeecCCCceEEEEEccC--CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352          328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  405 (1093)
Q Consensus       328 ~~~l~~h~~~V~~~~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  405 (1093)
                      .+.+..+.+.+.+.+|||||++++.+...+  ..|.+||+.+|+...                    +....+.+.+.+|
T Consensus       188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~  247 (427)
T PRK02889        188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAW  247 (427)
T ss_pred             ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEE
Confidence            344556777899999999999744443222  459999999987543                    2223355678999


Q ss_pred             CCCCCEEEE-EEcCCEEEEEEc--cCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE--CCCCceeE
Q 001352          406 SPDGSLLGV-AYSKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD--AVTGSRTY  480 (1093)
Q Consensus       406 s~dg~~las-~~~d~~i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd--~~~~~~~~  480 (1093)
                      ||||+.|+. .+.++...||.+  .++. .+   .+..+...+....|+|||+. ++++...++...||.  +.+++.. 
T Consensus       248 SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~~~-  321 (427)
T PRK02889        248 SPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGAAQ-  321 (427)
T ss_pred             CCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCceE-
Confidence            999999875 566776666654  4443 22   34456666678899999995 233444456666665  4455432 


Q ss_pred             EeecCCCCeEEeeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001352          481 SFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  557 (1093)
Q Consensus       481 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~  557 (1093)
                      .+..+........|  ++||++|+..+.++   .|.+||+.++.......  ........|+|||+.|+..+..+ +...
T Consensus       322 ~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~-g~~~  396 (427)
T PRK02889        322 RVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQG-GRSV  396 (427)
T ss_pred             EEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecC-CCEE
Confidence            22222222334556  45778888776554   59999998776543322  22346789999999999887643 3566


Q ss_pred             EEEEeCCCCeeeeeeecccccCCCeEEEEEcCC
Q 001352          558 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA  590 (1093)
Q Consensus       558 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~  590 (1093)
                      +++.+. +|...+.+..+.   +.+...+|+|-
T Consensus       397 l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp~  425 (427)
T PRK02889        397 LAAVSS-DGRIKQRLSVQG---GDVREPSWGPF  425 (427)
T ss_pred             EEEEEC-CCCceEEeecCC---CCCCCCccCCC
Confidence            777777 455555555443   55666777763

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.47  E-value=4.7e-08  Score=119.01  Aligned_cols=519  Identities=12%  Similarity=0.162  Sum_probs=291.8

Q ss_pred             CCeEEEEECCCCCEEEEEEcCC----EEEEEEccCCCcccceEEec-----cccccEEEEEeeCCCCcEEEEEEcCCCcE
Q 001352          398 VSVNRVVWSPDGSLLGVAYSKH----IVQLYAYHGGSDARQQLEID-----AHVGNVNDLAFSAPCKQISVITCGDDKTI  468 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~las~~~d~----~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  468 (1093)
                      ..+...+|.++...+.++....    .|.+.....+........+.     ...+.|.++.|.++..  .++.+..+|.|
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi   99 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI   99 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence            4677778877665544443322    23444333322222222332     2346899999999998  56777778888


Q ss_pred             EEE----ECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC------------C-C----------C
Q 001352          469 KVW----DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------S-L----------G  521 (1093)
Q Consensus       469 ~vw----d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~------------~-~----------~  521 (1093)
                      .+.    |..+.. +.....-...|.+++|+|  |++.|+..+.+|++.+-.-+            . +          +
T Consensus       100 ~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk  176 (928)
T PF04762_consen  100 ILVREDPDPDEDE-IEIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK  176 (928)
T ss_pred             EEEEccCCCCCce-eEEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence            888    433332 222223567899999955  66799999989888765321            0 0          0


Q ss_pred             ceEEecC------------------------CCCceEEEEEccCCCEEEEEecCCC-C-ceeEEEEeCCCCeeeeeeecc
Q 001352          522 ARVDYDA------------------------PGLGCTRMAYSANGRRLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGL  575 (1093)
Q Consensus       522 ~~~~~~~------------------------~~~~v~~~~~s~d~~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~  575 (1093)
                      ....+.+                        ....-..++|-.||.++|+.+.+.. + ...+++|+-+ |.+..+....
T Consensus       177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v  255 (928)
T PF04762_consen  177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV  255 (928)
T ss_pred             ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence            0000000                        1223467899999999998876332 2 5889999955 7665555433


Q ss_pred             cccCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEEEEecC--CCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001352          576 QLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKIL  650 (1093)
Q Consensus       576 ~~~~~~v~~v~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  650 (1093)
                      .   +--.+++|-|.|+.|++...   ...|.+|..+ |-.-..+...  .....|..+.|++|+..||+...|. |.+|
T Consensus       256 ~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLW  330 (928)
T PF04762_consen  256 D---GLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLW  330 (928)
T ss_pred             C---CccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEE
Confidence            3   44567899999999888653   4567777754 4444444432  2334689999999999999988665 9999


Q ss_pred             EcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccC
Q 001352          651 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP  730 (1093)
Q Consensus       651 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~  730 (1093)
                      ...+-....+..-        .+.                                                        
T Consensus       331 t~~NYHWYLKqei--------~~~--------------------------------------------------------  346 (928)
T PF04762_consen  331 TRSNYHWYLKQEI--------RFS--------------------------------------------------------  346 (928)
T ss_pred             EeeCCEEEEEEEE--------Ecc--------------------------------------------------------
Confidence            8876543321110        000                                                        


Q ss_pred             ccccccceEEEEeecCC-ceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEE
Q 001352          731 SKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF  809 (1093)
Q Consensus       731 ~~~~~~~i~~l~~s~~g-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l  809 (1093)
                         ....+..+.|+|.. ..|...+.+|.+..+++.-                  ++..+.                   
T Consensus       347 ---~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~------------------~v~~s~-------------------  386 (928)
T PF04762_consen  347 ---SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW------------------DVSRSP-------------------  386 (928)
T ss_pred             ---CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE------------------EEEecC-------------------
Confidence               01112225555533 3355555556666655431                  111110                   


Q ss_pred             EEcc-CCCEEEEEeCCeEEEEEccCceeE-----EEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce----
Q 001352          810 ALSK-NDAYLFSASGGVISLYIVMTFKTI-----LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----  879 (1093)
Q Consensus       810 ~~s~-dg~~la~~~dg~i~iwd~~~~~~~-----~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~----  879 (1093)
                      ..+| |...+++..+.++.+-.+...-..     ..+. ....|.+++|++ ++..+|+-..||.|.+|.......    
T Consensus       387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~  464 (928)
T PF04762_consen  387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVK  464 (928)
T ss_pred             CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCccccc
Confidence            0112 222344444455666665543221     2222 346899999999 677789999999999998644221    


Q ss_pred             ----eeecc----------cccCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCceeeeeeeecCCCcccCCCCceE
Q 001352          880 ----ISKLE----------GHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH  942 (1093)
Q Consensus       880 ----~~~l~----------~h~~~V~~l~~s~dg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  942 (1093)
                          ...+.          .-...+..++|..+...++....+   ..+.++++...+...  .........   ..+..
T Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~---~~~~~  539 (928)
T PF04762_consen  465 PPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSA--SVESSTEVD---GVVLI  539 (928)
T ss_pred             CcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCce--eEEEEeccC---ceEEE
Confidence                11111          123457888998887777666554   578888885432111  111111111   13445


Q ss_pred             EEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCC---EEEEEeCCCcEEEEEcCCCceEEEec
Q 001352          943 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR---MVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       943 ~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~---~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                      +...++...++. ..+|.+..++..........++. ..+-..++...+..   .++.-+..|.+++    ++..++   
T Consensus       540 ~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~-~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la---  611 (928)
T PF04762_consen  540 ISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ-PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA---  611 (928)
T ss_pred             EeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC-CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe---
Confidence            555555553444 67888887666544332211211 22233333333333   3443333444443    334432   


Q ss_pred             cccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352         1019 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus      1019 ~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
                                 ..+.  +++.+   +.+|+.......+++..+.
T Consensus       612 -----------~~~t--SF~v~---~~~Ll~TT~~h~l~fv~L~  639 (928)
T PF04762_consen  612 -----------SNCT--SFAVT---DSFLLFTTTQHTLKFVHLN  639 (928)
T ss_pred             -----------cCCc--eEEEE---cCEEEEEecCceEEEEECc
Confidence                       1233  34444   3678888888899999997

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=5.9e-11  Score=125.62  Aligned_cols=286  Identities=11%  Similarity=0.114  Sum_probs=186.8

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-  415 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~-  415 (1093)
                      .....++|++|+ ++|.+ .+..|.|++..++..+.+.                     ....+.++.|||-|.+|.+= 
T Consensus        36 ~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt~---------------------~~~~~~~L~fSP~g~yL~T~e   92 (566)
T KOG2315|consen   36 PCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLCV---------------------ELKKTYDLLFSPKGNYLLTWE   92 (566)
T ss_pred             cceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEEe---------------------ccceeeeeeeccccccccccc
Confidence            467889999998 46664 5688999999988644321                     12278899999999999762 


Q ss_pred             ----EcC-----CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC
Q 001352          416 ----YSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  486 (1093)
Q Consensus       416 ----~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~  486 (1093)
                          ..+     ..+.+|+++++.... ....+ .... ++..|+.|..   ++.--..+.+.+|++..-+.+. -+-|.
T Consensus        93 ~~~i~~~~~~~~pn~~v~~vet~~~~s-~~q~k-~Q~~-W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl~~  165 (566)
T KOG2315|consen   93 PWAIYGPKNASNPNVLVYNVETGVQRS-QIQKK-MQNG-WVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKLSV  165 (566)
T ss_pred             ccccccCCCCCCCceeeeeeccceehh-heehh-hhcC-cccccccchh---hhhhhhcceEEEEecCCcccee-eeeec
Confidence                122     347899999953322 11212 2222 6899999986   4444445679999987743322 12367


Q ss_pred             CCeEEeeecccCCccEEEE-----EecCCeEEEEEcCCCCceEEecC---CCCceEEEEEccCCCEEEEE-ecCC-----
Q 001352          487 APVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSC-GTSK-----  552 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~~~-~~~~-----  552 (1093)
                      ..|..+.++|.+.-..+++     .+.-+.|++|.......-.....   ....-..+.|++-|.-|++. +.+-     
T Consensus       166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~  245 (566)
T KOG2315|consen  166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA  245 (566)
T ss_pred             cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc
Confidence            7888888887755555554     35566799997762222111110   11123457788877654432 2211     


Q ss_pred             --CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352          553 --EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  628 (1093)
Q Consensus       553 --~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  628 (1093)
                        -|+..+++.+++.......+..    .++|.++.|+|++..+++  |-+--.+.|+|++ +..+..+..    ++-++
T Consensus       246 SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN~  316 (566)
T KOG2315|consen  246 SYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRNT  316 (566)
T ss_pred             cccccceEEEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCccc
Confidence              2456788888873333333322    489999999999977665  6688899999985 455555542    23578


Q ss_pred             EEEecCCCEEEEEECC---CeEEEEEcCCCceeeec
Q 001352          629 ICFNKNGTLLAVIANE---NRIKILETPESNSVDAA  661 (1093)
Q Consensus       629 v~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~  661 (1093)
                      +-|+|.|++++.++-+   |.|.+||+.+.+.+..+
T Consensus       317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~  352 (566)
T KOG2315|consen  317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF  352 (566)
T ss_pred             eEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence            9999999999988764   88999999876555443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.47  E-value=6.7e-12  Score=126.59  Aligned_cols=272  Identities=13%  Similarity=0.122  Sum_probs=193.0

Q ss_pred             CCCceeeeecCCCceEEEEEc-cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352          335 SSSPMSMDFHPVQHTLLLVGT-NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  413 (1093)
Q Consensus       335 ~~~V~~~~~spdg~~llasg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la  413 (1093)
                      ...|+.++|--|++.=+..+. .+-.+.............    .||+..         ......+|..++..  ...|+
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~--dg~Li  119 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA--DGTLI  119 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc--CCEEE
Confidence            447888888877754344443 555666666655544432    233222         23345566666654  34677


Q ss_pred             EEEcCCEEEEEEccCCCccc-ceEEeccccccEEEEEeeCCCCcEEEEEEcCC--CcEEEEECCCCceeEEeecC-----
Q 001352          414 VAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGH-----  485 (1093)
Q Consensus       414 s~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d--~~i~vwd~~~~~~~~~~~~h-----  485 (1093)
                      +|-.+|.+.+|..+.+..-. ....+..+ ..+..+.-++.... ++++||..  ..+.|||++..+.+.+-+.-     
T Consensus       120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L  197 (412)
T KOG3881|consen  120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL  197 (412)
T ss_pred             EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence            78889999999998554211 11123323 45667777776665 67779988  88999999998666543321     


Q ss_pred             ----CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352          486 ----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  560 (1093)
Q Consensus       486 ----~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i  560 (1093)
                          .-.++++.|.+..+...+++++.-+.+++||.+.++. +..+.....+++++...|+|++++++..    .+.+..
T Consensus       198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~  273 (412)
T KOG3881|consen  198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK  273 (412)
T ss_pred             cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence                1234566676554468999999999999999997654 4477778889999999999999999865    566999


Q ss_pred             EeCCCCeeeee-eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec
Q 001352          561 WNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  633 (1093)
Q Consensus       561 wd~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  633 (1093)
                      +|++++..... +.+..   +.+.++..+|..++++++|-|..|||+|+.+.+++...-....   .+++.+.+
T Consensus       274 FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~---lt~il~~~  341 (412)
T KOG3881|consen  274 FDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR---LTFILLRD  341 (412)
T ss_pred             ecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc---ccEEEecC
Confidence            99999998877 77777   8999999999999999999999999999999777765544322   45555544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.47  E-value=3.4e-11  Score=125.64  Aligned_cols=280  Identities=14%  Similarity=0.114  Sum_probs=188.8

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  416 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~  416 (1093)
                      ++..+.|||.|++ |++.. -..|.+|+-..+..+..+                     -...|..+.|||.++||.+=+
T Consensus        34 p~~~~~~SP~G~~-l~~~~-~~~V~~~~g~~~~~l~~~---------------------~~~~V~~~~fSP~~kYL~tw~   90 (561)
T COG5354          34 PVAYVSESPLGTY-LFSEH-AAGVECWGGPSKAKLVRF---------------------RHPDVKYLDFSPNEKYLVTWS   90 (561)
T ss_pred             chhheeecCcchh-eehhh-ccceEEccccchhheeee---------------------ecCCceecccCcccceeeeec
Confidence            7889999999996 66543 356999998877655331                     235799999999999999865


Q ss_pred             cCC---------------EEEEEEccCCCcccceEEecccccc--EE-EEEeeCCCCcEEEEEEcCCCcEEEEECCCCce
Q 001352          417 SKH---------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  478 (1093)
Q Consensus       417 ~d~---------------~i~iwd~~~~~~~~~~~~~~~h~~~--v~-~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~  478 (1093)
                      ..+               .+.+||..+|..+.   .+.+-..+  .+ -+.|+-+.+  +++=. ....++|+++ ++..
T Consensus        91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t~n~  163 (561)
T COG5354          91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-TDNI  163 (561)
T ss_pred             cCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-CCcc
Confidence            433               49999999987655   44444444  44 678999887  33332 2346999997 4432


Q ss_pred             e-EEeec-CCCCeEEeeecccCCccEEEE-----EecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec-
Q 001352          479 T-YSFEG-HGAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT-  550 (1093)
Q Consensus       479 ~-~~~~~-h~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-  550 (1093)
                      . ..+.. ....|....++|..++..|+.     .+.++++++|.+.....+.........-..+.|.+.|+++++-.. 
T Consensus       164 ~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t  243 (561)
T COG5354         164 EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT  243 (561)
T ss_pred             ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEE
Confidence            2 12211 124567777877766666554     467788999998866555544433333346788899988765321 


Q ss_pred             ------CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCceEEEEecCCC
Q 001352          551 ------SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGG  622 (1093)
Q Consensus       551 ------~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~  622 (1093)
                            +.-++..++++++..... .......   ++|...+|.|.++.+++  |-.+-.+.++|++.. ....+...  
T Consensus       244 ~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~--  316 (561)
T COG5354         244 HTKSNKSYFGESNLYLLRITERSI-PVEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ--  316 (561)
T ss_pred             eeecccceeccceEEEEeeccccc-ceecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc--
Confidence                  111345688888874333 2222333   89999999999888766  458889999999876 44444322  


Q ss_pred             CCCCceEEEecCCCEEEEEECC---CeEEEEEcCCC
Q 001352          623 LPENPRICFNKNGTLLAVIANE---NRIKILETPES  655 (1093)
Q Consensus       623 ~~~v~~v~~s~~~~~l~~~~~d---g~i~iw~~~~~  655 (1093)
                        .-+.+.|+|.++++++++-|   |.+.+|+....
T Consensus       317 --~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         317 --KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             --ccccccccCcccEEEEecCCccccceEEeccCCc
Confidence              23678999999999997765   66777776643

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=4.9e-10  Score=113.24  Aligned_cols=280  Identities=11%  Similarity=0.105  Sum_probs=185.5

Q ss_pred             cccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecc---ceeEEeeecCcccCcCcccccccCCccc
Q 001352          708 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLY  784 (1093)
Q Consensus       708 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~  784 (1093)
                      +.-|.+|+++..........   .....+..+-++++++++.|.++..+   |.+.-|.++.                  
T Consensus        15 s~gI~v~~ld~~~g~l~~~~---~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~------------------   73 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQ---LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP------------------   73 (346)
T ss_pred             CCceEEEEEeCcccccchhh---hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC------------------
Confidence            46688888774333221111   12255678889999999999888765   6666666543                  


Q ss_pred             CCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEccC-ceeEEE--ECCCCCC----------eEE
Q 001352          785 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATS  849 (1093)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~  849 (1093)
                        .+|..........  ...+...++++++|++|+++.  .|.|.++-+.. |.....  ...|.+.          +..
T Consensus        74 --~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~  149 (346)
T COG2706          74 --DDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS  149 (346)
T ss_pred             --CCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence              3333222222221  233337899999999999997  48999999865 433221  1123333          788


Q ss_pred             EEEcCCCCCEEEEEeCC-CeEEEEEcCCcceeeecc---cccCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCC--Ccee
Q 001352          850 LAFNPHDNNVIAIGMDD-STILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQ  922 (1093)
Q Consensus       850 l~~s~~d~~~lasg~~d-g~i~iwd~~~~~~~~~l~---~h~~~V~~l~~s~dg~~l~s~s~-dg~i~iwd~~~--~~~~  922 (1093)
                      ..+.| ++++|++.+-. -.|.+|++..|++...-.   .-...-+.|+|+|++++.....+ +++|.+|..+.  ++..
T Consensus       150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~  228 (346)
T COG2706         150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE  228 (346)
T ss_pred             eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence            89999 89888876532 379999999876532211   23445688999999999877665 89999999987  4544


Q ss_pred             eeeeeecCCCcccCCCCceEEEEccCCCEEEEEeC--CeEEEEEcCC--cce-eeeeecCCCCCEEEEEEccCCCEEEEE
Q 001352          923 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--THLAIYEAEE--LTC-LKQWFPISSVPISQATFSCDCRMVFTS  997 (1093)
Q Consensus       923 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d--~~i~vwd~~~--~~~-~~~~~~~h~~~v~~~~fs~dg~~l~t~  997 (1093)
                      ..+.+..++....-..+..++.++|||++|.++..  ..|.++.+..  ++. .......+........|+++|++|+++
T Consensus       229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa  308 (346)
T COG2706         229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA  308 (346)
T ss_pred             EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence            44444444444333356888999999999999754  3688887653  322 112233345557889999999999999


Q ss_pred             eCCC-cEEEEEcC--CCce
Q 001352          998 FVDG-TLSIHEAS--NLEV 1013 (1093)
Q Consensus       998 ~~dg-~v~vwd~~--~~~~ 1013 (1093)
                      ..++ .|.+|..+  +|++
T Consensus       309 ~q~sd~i~vf~~d~~TG~L  327 (346)
T COG2706         309 NQKSDNITVFERDKETGRL  327 (346)
T ss_pred             ccCCCcEEEEEEcCCCceE
Confidence            8764 57777654  4444

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.45  E-value=4.5e-10  Score=119.19  Aligned_cols=204  Identities=11%  Similarity=0.099  Sum_probs=131.9

Q ss_pred             EEEEccCCCEEEEEe---CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ccee-e-
Q 001352          808 CFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI-S-  881 (1093)
Q Consensus       808 ~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~-~~~~-~-  881 (1093)
                      .++++|||+++.+..   ++.|.+.|+.+++.+.++.... ...-...++ +. .+ +.+.||......+.+ |+.. . 
T Consensus       109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DT-FF-MHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-Cc-cE-EEeecCceEEEEecCCCceEEee
Confidence            568899999888775   5789999999999998887533 222223322 22 22 233455444433322 2211 1 


Q ss_pred             --ecccccCCe-EEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcc----cCCCCceEEEEccCCCEEE
Q 001352          882 --KLEGHSKRV-TGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQTRFL  953 (1093)
Q Consensus       882 --~l~~h~~~V-~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~dg~~l~  953 (1093)
                        .+.+-..++ ..-.|++ ||+++..... |.|.+-|+.+.+......+.......    -..+...-++++|+++.+.
T Consensus       185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence              111100000 0014566 8888777666 99999998765544433333321110    0113455699999999988


Q ss_pred             EEe---C--------CeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEEcCCCceEEEec
Q 001352          954 LVH---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       954 ~~~---d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~-~l~t~~-~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                      +..   .        +.|.++|+.+++.+..+..+  ..+..++|||||+ +|++.. .++.|.+.|+.+++.+.++.
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            732   1        57999999999999987765  4899999999999 777665 57889999999999998884

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=3.3e-11  Score=126.62  Aligned_cols=320  Identities=10%  Similarity=0.108  Sum_probs=205.1

Q ss_pred             CCCCCCcccccccccccCCCccCCchHHHHHhhccCCCCceeeeecCCCceEEEEEcc-----------CCcEEEEecCC
Q 001352          299 PDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN-----------VGDTGLWDVNS  367 (1093)
Q Consensus       299 ~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~-----------dg~i~iwd~~~  367 (1093)
                      -.|||.++++..........|-.. ....++.+ .|. .|.-+.|||+.+| |+|=+.           ...++|||+.+
T Consensus       216 v~wSP~GTYL~t~Hk~GI~lWGG~-~f~r~~RF-~Hp-~Vq~idfSP~EkY-LVT~s~~p~~~~~~d~e~~~l~IWDI~t  291 (698)
T KOG2314|consen  216 VRWSPKGTYLVTFHKQGIALWGGE-SFDRIQRF-YHP-GVQFIDFSPNEKY-LVTYSPEPIIVEEDDNEGQQLIIWDIAT  291 (698)
T ss_pred             EEecCCceEEEEEeccceeeecCc-cHHHHHhc-cCC-CceeeecCCccce-EEEecCCccccCcccCCCceEEEEEccc
Confidence            468888887765543321111111 11223333 366 8999999999998 554332           14699999999


Q ss_pred             CceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEE
Q 001352          368 GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND  447 (1093)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~  447 (1093)
                      |...+.+..                +.+....-.-+.||.|++|+|--..+ +|.||+..+-..+.. ..+  .-..|..
T Consensus       292 G~lkrsF~~----------------~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-Ksl--ki~gIr~  351 (698)
T KOG2314|consen  292 GLLKRSFPV----------------IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDK-KSL--KISGIRD  351 (698)
T ss_pred             cchhcceec----------------cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecc-ccc--CCccccC
Confidence            998875442                11222223347899999999988775 499999876432221 111  2346888


Q ss_pred             EEeeCCCCcEEEEEEcC-----CCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEe----------cCCeE
Q 001352          448 LAFSAPCKQISVITCGD-----DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------VDGKI  512 (1093)
Q Consensus       448 ~~~s~d~~~l~l~s~~~-----d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~dg~i  512 (1093)
                      ..|+|.+.  +|+--..     -..+.+-.+.+++.+++-.-|.  |..+.++...+|.+|+.--          .-..+
T Consensus       352 FswsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~  427 (698)
T KOG2314|consen  352 FSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNL  427 (698)
T ss_pred             cccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeE
Confidence            99999988  5554332     2357777788888777655443  5555666677787877532          12235


Q ss_pred             EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-C---eeeeeeecccccCCCeEEEEEc
Q 001352          513 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-G---AIKRTYQGLQLQHNSVSVVHFD  588 (1093)
Q Consensus       513 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~---~~~~~~~~~~~~~~~v~~v~~~  588 (1093)
                      .|+.++..........-...|...+|-|.|..+++.+.. +....+..|.+++ .   .++..+..     ...+.+.|+
T Consensus       428 eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk-----~~~N~vfws  501 (698)
T KOG2314|consen  428 EIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK-----KFANTVFWS  501 (698)
T ss_pred             EEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc-----cccceEEEc
Confidence            667666665555444455678899999999988876643 2366788888773 2   22333332     457889999


Q ss_pred             CCCCEEEEE---eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC------CCeEEEEEcCC
Q 001352          589 TAKDQILAA---GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKILETPE  654 (1093)
Q Consensus       589 ~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw~~~~  654 (1093)
                      |.|++++.+   |..|.+..+|..-.....+- ...+ ...+.+.|.|.|+++++++.      |.-.++|+...
T Consensus       502 PkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  502 PKGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             CCCcEEEEEEecccccceEEEecchhhhhhcc-Cccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            999998874   56899999998742322221 1122 23578999999999999876      34456666553

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=9.6e-11  Score=124.06  Aligned_cols=336  Identities=14%  Similarity=0.138  Sum_probs=211.8

Q ss_pred             CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEE-----eC-----
Q 001352          530 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-----GD-----  599 (1093)
Q Consensus       530 ~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-----~~-----  599 (1093)
                      ..++...++|++|++++.+.     +..+.|++..++..+.+...     ..+..+.|+|.+.++.+-     ..     
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~-----~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~  103 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL-----KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS  103 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc-----ceeeeeeecccccccccccccccccCCCCC
Confidence            34577899999999999886     44589999888864333332     358899999999988652     12     


Q ss_pred             CCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCce
Q 001352          600 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  679 (1093)
Q Consensus       600 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  679 (1093)
                      .-.+.+|+.+++.....+......  -++..|++|..+.+- -..+.+.+|+..+.+. ...+-+...++.+.++|.+..
T Consensus       104 ~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~-~~~kl~~~~i~~f~lSpgp~~  179 (566)
T KOG2315|consen  104 NPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKT-IQHKLSVSGITMLSLSPGPEP  179 (566)
T ss_pred             CCceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCccc-eeeeeeccceeeEEecCCCCC
Confidence            234779999996666555543332  257888888765433 3357899999987422 233445667777888765322


Q ss_pred             eeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecccee
Q 001352          680 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH  759 (1093)
Q Consensus       680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v  759 (1093)
                      .       .+++.        ..-..+.-..+++|...........  ........+ =..+.|.+-|.-|++....   
T Consensus       180 ~-------~vAvy--------vPe~kGaPa~vri~~~~~~~~~~~~--a~ksFFkad-kvqm~WN~~gt~LLvLast---  238 (566)
T KOG2315|consen  180 P-------FVAVY--------VPEKKGAPASVRIYKYPEEGQHQPV--ANKSFFKAD-KVQMKWNKLGTALLVLAST---  238 (566)
T ss_pred             c-------eEEEE--------ccCCCCCCcEEEEeccccccccchh--hhccccccc-eeEEEeccCCceEEEEEEE---
Confidence            1       11110        0112344567888886522221111  100001112 2345677766655443321   


Q ss_pred             EEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe---CCeEEEEEccCcee
Q 001352          760 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKT  836 (1093)
Q Consensus       760 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~  836 (1093)
                         |++....+    .-...++.+.++....+..  .+   ...++|.++.|+|+|+-+++..   -..+.|+|+. +..
T Consensus       239 ---dVDktn~S----YYGEq~Lyll~t~g~s~~V--~L---~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~  305 (566)
T KOG2315|consen  239 ---DVDKTNAS----YYGEQTLYLLATQGESVSV--PL---LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKP  305 (566)
T ss_pred             ---eecCCCcc----ccccceEEEEEecCceEEE--ec---CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCE
Confidence               01110000    0011223333444222222  22   2578999999999998888776   3789999986 555


Q ss_pred             EEEECCCCCCeEEEEEcCCCCCEEEEEeCC---CeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeC------
Q 001352          837 ILTIMPPSPTATSLAFNPHDNNVIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG------  907 (1093)
Q Consensus       837 ~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~------  907 (1093)
                      +..+  ..++-.++-|+| .|++|+.++-+   |.+.|||+.+.+++..+..-..  +-+.|+|||.+++|+..      
T Consensus       306 v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrv  380 (566)
T KOG2315|consen  306 VFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRV  380 (566)
T ss_pred             eEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEe
Confidence            5555  466778899999 88888887765   7999999999999888875443  45799999999998865      


Q ss_pred             CCcEEEEeCCC
Q 001352          908 DAQIFVWDVDG  918 (1093)
Q Consensus       908 dg~i~iwd~~~  918 (1093)
                      |+.++||+..+
T Consensus       381 dNg~KiwhytG  391 (566)
T KOG2315|consen  381 DNGIKIWHYTG  391 (566)
T ss_pred             cCCeEEEEecC
Confidence            67799999987

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=9.4e-11  Score=123.26  Aligned_cols=328  Identities=13%  Similarity=0.168  Sum_probs=201.7

Q ss_pred             ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe-----------CC
Q 001352          532 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DD  600 (1093)
Q Consensus       532 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-----------~d  600 (1093)
                      .-+-+.|||.|.+|++-...|     |.+|--.+-..++.|..     ..|.-+.|||+.+||++-+           +.
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~  281 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG  281 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCC
Confidence            346789999999999987533     89998777777766654     3588999999999999854           22


Q ss_pred             CcEEEEECCCCceEEEEecCCCC-CCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCce
Q 001352          601 HVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  679 (1093)
Q Consensus       601 g~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  679 (1093)
                      ..++|||+.+|.....+...... ..-.-+.||.|++++|.... .+|.||+...-.++.....                
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl----------------  344 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL----------------  344 (698)
T ss_pred             ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc----------------
Confidence            57999999999999888763222 22345789999999998776 5788887664322211110                


Q ss_pred             eeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecccee
Q 001352          680 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH  759 (1093)
Q Consensus       680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v  759 (1093)
                                                                            .-..|....|+|.+..|+.-+..   
T Consensus       345 ------------------------------------------------------ki~gIr~FswsP~~~llAYwtpe---  367 (698)
T KOG2314|consen  345 ------------------------------------------------------KISGIRDFSWSPTSNLLAYWTPE---  367 (698)
T ss_pred             ------------------------------------------------------CCccccCcccCCCcceEEEEccc---
Confidence                                                                  11234445555554433222111   


Q ss_pred             EEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEE
Q 001352          760 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT  839 (1093)
Q Consensus       760 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~  839 (1093)
                                                  +..           ..                    .++.+..+.+++.+++
T Consensus       368 ----------------------------~~~-----------~p--------------------arvtL~evPs~~~iRt  388 (698)
T KOG2314|consen  368 ----------------------------TNN-----------IP--------------------ARVTLMEVPSKREIRT  388 (698)
T ss_pred             ----------------------------ccC-----------Cc--------------------ceEEEEecCccceeee
Confidence                                        000           00                    1233444444444444


Q ss_pred             ECCCCCCeEEEEEcCCCCCEEEEEe----------CCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeC--
Q 001352          840 IMPPSPTATSLAFNPHDNNVIAIGM----------DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG--  907 (1093)
Q Consensus       840 ~~~~~~~i~~l~~s~~d~~~lasg~----------~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~--  907 (1093)
                      -.-+.-.-..+-|-. +|.+|+.--          .=..+.|+.+.........-.-...|...+|-|.|+.+++.+.  
T Consensus       389 ~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~  467 (698)
T KOG2314|consen  389 KNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNT  467 (698)
T ss_pred             ccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccc
Confidence            333332223344554 555555421          1124556666543322111224567889999999998877654  


Q ss_pred             -CCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE----eCCeEEEEEcCCcceeeeeecCCCCCE
Q 001352          908 -DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPISSVPI  982 (1093)
Q Consensus       908 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~----~d~~i~vwd~~~~~~~~~~~~~h~~~v  982 (1093)
                       ..++.+|.+.+.. .....+..++..     ....+.|||.|++++++    ..|.+..+|+.-..+...-...| ...
T Consensus       468 ~k~tvsfY~~e~~~-~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~a  540 (698)
T KOG2314|consen  468 VKNTVSFYAVETNI-KKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAA  540 (698)
T ss_pred             cccceeEEEeecCC-Cchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-ccc
Confidence             3568999888522 222344444332     36789999999999873    56889999987544433322333 345


Q ss_pred             EEEEEccCCCEEEEEeCCC------cEEEEEcCC
Q 001352          983 SQATFSCDCRMVFTSFVDG------TLSIHEASN 1010 (1093)
Q Consensus       983 ~~~~fs~dg~~l~t~~~dg------~v~vwd~~~ 1010 (1093)
                      +.+.|.|.|+|++|+++-.      --++|+...
T Consensus       541 t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  541 TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             ccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            6789999999999998643      345565543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=1.1e-11  Score=141.67  Aligned_cols=228  Identities=14%  Similarity=0.103  Sum_probs=150.2

Q ss_pred             HHHHhhccCCCCceeeeecCCCceEEEEEc--cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEE
Q 001352          326 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  403 (1093)
Q Consensus       326 ~~~~~l~~h~~~V~~~~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v  403 (1093)
                      ...+.+..|...+.+.+|||||++|+.+..  .+..|.+||+.+|+...                    +..+.+.+.+.
T Consensus       192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~~~  251 (435)
T PRK05137        192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTFAP  251 (435)
T ss_pred             CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCcccCc
Confidence            334556678889999999999997544432  24689999999887543                    33456678889


Q ss_pred             EECCCCCEEEEE-EcCC--EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEc-CCC--cEEEEECCCCc
Q 001352          404 VWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVTGS  477 (1093)
Q Consensus       404 ~~s~dg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d~--~i~vwd~~~~~  477 (1093)
                      +|||||+.|+.. +.++  .|.+||+.+++..    .+..+.......+|+|||+.  ++..+ .++  .|.+||+.+++
T Consensus       252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~~  325 (435)
T PRK05137        252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGSN  325 (435)
T ss_pred             EECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCCC
Confidence            999999988754 4444  4778888887532    35556666778999999995  44443 333  68888977665


Q ss_pred             eeEEeecCCCCeEEeeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001352          478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  554 (1093)
Q Consensus       478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~  554 (1093)
                      . +.+..+...+....|+  +||+.|+..+.+   ..|.+||+...... .+. ....+....|+|||+.|+..+.....
T Consensus       326 ~-~~lt~~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~~~~~~  400 (435)
T PRK05137        326 P-RRISFGGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFRQTPGS  400 (435)
T ss_pred             e-EEeecCCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEEccCCC
Confidence            4 3443344455566674  566777776543   35778887554432 222 22356778999999999877653322


Q ss_pred             c--eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC
Q 001352          555 E--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  589 (1093)
Q Consensus       555 ~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~  589 (1093)
                      .  ..++++|+..+.. +.+.. .   +.+...+|+|
T Consensus       401 ~~~~~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp  432 (435)
T PRK05137        401 GGAPKLYTVDLTGRNE-REVPT-P---GDASDPAWSP  432 (435)
T ss_pred             CCcceEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence            1  4688889876654 33332 2   3355566665

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=5e-11  Score=125.83  Aligned_cols=284  Identities=16%  Similarity=0.185  Sum_probs=190.0

Q ss_pred             cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC-CCeEEeeecccCCccEEEEEecCCeEEEEEcC
Q 001352          440 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYD  518 (1093)
Q Consensus       440 ~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~  518 (1093)
                      +|...-+.+..+|||++ +++||...-.|++||+..-...  |..|. ..+..+.+. +.|-..++.-..|.+|.+...-
T Consensus        49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak~  124 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKY  124 (703)
T ss_pred             CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEe-ccchhhheEeecCceeeehhhc
Confidence            46777889999999997 7888999999999998765543  33332 223222221 2233344445556665543211


Q ss_pred             CCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe
Q 001352          519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG  598 (1093)
Q Consensus       519 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  598 (1093)
                        +.-..... ......++++.-..-|++++.+    ..|+-+++..|..+..+....   +.+++|..++....|++|+
T Consensus       125 --G~hy~~RI-P~~GRDm~y~~~scDly~~gsg----~evYRlNLEqGrfL~P~~~~~---~~lN~v~in~~hgLla~Gt  194 (703)
T KOG2321|consen  125 --GRHYRTRI-PKFGRDMKYHKPSCDLYLVGSG----SEVYRLNLEQGRFLNPFETDS---GELNVVSINEEHGLLACGT  194 (703)
T ss_pred             --Ceeeeeec-CcCCccccccCCCccEEEeecC----cceEEEEcccccccccccccc---ccceeeeecCccceEEecc
Confidence              11111111 1122445554433333333332    239999999999999888776   8899999999999999999


Q ss_pred             CCCcEEEEECCCCceEEEEecCCC---------CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeec-ccccccc
Q 001352          599 DDHVIKIWDMNKVQLLTTIDAGGG---------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNL  668 (1093)
Q Consensus       599 ~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i  668 (1093)
                      .+|.|..||.++...+..+....+         .+.|+++.|+.+|-.+++|+.+|.+.|||+...+++... .+..-+|
T Consensus       195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi  274 (703)
T KOG2321|consen  195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI  274 (703)
T ss_pred             cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence            999999999998887776654322         345899999999999999999999999999988665433 3444456


Q ss_pred             eeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCc
Q 001352          669 RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ  748 (1093)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~  748 (1093)
                      ..+.|.+.                    -+++.+++. ....+++||-..+.+.....       ....+..+++-|++-
T Consensus       275 ~~l~~~~~--------------------~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-------pt~~lND~C~~p~sG  326 (703)
T KOG2321|consen  275 KKLDWQDT--------------------DQQNKVVSM-DKRILKIWDECTGKPMASIE-------PTSDLNDFCFVPGSG  326 (703)
T ss_pred             eeeccccc--------------------CCCceEEec-chHHhhhcccccCCceeecc-------ccCCcCceeeecCCc
Confidence            65655431                    123334433 34789999987666543322       345688899999999


Q ss_pred             eEEEeeccceeEEeeec
Q 001352          749 AIFALASNGVHLMWRWP  765 (1093)
Q Consensus       749 ~l~~~~~dg~v~vw~~~  765 (1093)
                      .++++-.++.+..|=++
T Consensus       327 m~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  327 MFFTANESSKMHTYYIP  343 (703)
T ss_pred             eEEEecCCCcceeEEcc
Confidence            88888888766665544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.40  E-value=1.6e-09  Score=109.70  Aligned_cols=253  Identities=13%  Similarity=0.183  Sum_probs=175.2

Q ss_pred             CCCCeeEEEEccCCCEEEEEe----CCeEEEEEccC--ceeE--EEECCCCCCeEEEEEcCCCCCEEEEEeC-CCeEEEE
Q 001352          802 SQEAVPCFALSKNDAYLFSAS----GGVISLYIVMT--FKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMD-DSTILIY  872 (1093)
Q Consensus       802 ~~~~v~~l~~s~dg~~la~~~----dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg~i~iw  872 (1093)
                      ....++-++++|+++.|.++.    .|.|..|.+..  |+..  ........+-+.+++++ ++++|+++.. -|.|.++
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence            566778899999999888875    36788887764  4432  22222334448899999 8999988875 4799999


Q ss_pred             EcCC-cceee--ecccccCC----------eEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceeeeeeeecCCCcccCC
Q 001352          873 NARS-SEVIS--KLEGHSKR----------VTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  937 (1093)
Q Consensus       873 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~dg~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  937 (1093)
                      -++. |.+..  ....|.+.          +.+..|.|++++|++.+  .|+ |.+|+++.+............|     
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G-----  190 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG-----  190 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence            9965 43321  22235555          88899999999999874  465 9999999877655444444332     


Q ss_pred             CCceEEEEccCCCEEEEE--eCCeEEEEEcCCc-ceeeeeec------C--CCCCEEEEEEccCCCEEEEEeC-CCcEEE
Q 001352          938 PSETHIQFHKDQTRFLLV--HETHLAIYEAEEL-TCLKQWFP------I--SSVPISQATFSCDCRMVFTSFV-DGTLSI 1005 (1093)
Q Consensus       938 ~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~-~~~~~~~~------~--h~~~v~~~~fs~dg~~l~t~~~-dg~v~v 1005 (1093)
                      .....++|+|++++..+.  -+++|.+|..... ..+..+..      .  -......+..++||++|.++.. ...|.+
T Consensus       191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~  270 (346)
T COG2706         191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV  270 (346)
T ss_pred             CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            457899999999998774  5689999998763 22222111      1  1557778999999999997643 236888


Q ss_pred             EEcCCCce-EEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCC-cEEEEecCCCCCCcc
Q 001352         1006 HEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTWA 1069 (1093)
Q Consensus      1006 wd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-~v~~w~~~~~~~~~~ 1069 (1093)
                      |.+....- +....   +.+    .....|..+.++| ++++|+++.+++ .|.+|.+....+++.
T Consensus       271 f~V~~~~g~L~~~~---~~~----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~  328 (346)
T COG2706         271 FSVDPDGGKLELVG---ITP----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLT  328 (346)
T ss_pred             EEEcCCCCEEEEEE---Eec----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence            87765422 22222   111    2245677899999 578888887765 799999987766553

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.40  E-value=7.6e-10  Score=117.50  Aligned_cols=269  Identities=14%  Similarity=0.144  Sum_probs=170.1

Q ss_pred             CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc----------CCEEEEEEcc
Q 001352          358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----------KHIVQLYAYH  427 (1093)
Q Consensus       358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~----------d~~i~iwd~~  427 (1093)
                      ++|.+.|..+++.+.....                  | ..+ ..+ +||||+.|+++..          +..|.+||..
T Consensus        27 ~~v~ViD~~~~~v~g~i~~------------------G-~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~   85 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDG------------------G-FLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ   85 (352)
T ss_pred             ceEEEEECCCCEEEEEEEc------------------c-CCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence            8999999999988865321                  1 111 124 9999999988855          6789999999


Q ss_pred             CCCcccceEEecc--c---cccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccE
Q 001352          428 GGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF  502 (1093)
Q Consensus       428 ~~~~~~~~~~~~~--h---~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  502 (1093)
                      +.+.+..+. +..  +   ...-..++++|||+.+++.--+.+..|-+.|+.+++.+.++..... ..-..   ..+.. 
T Consensus        86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~---t~e~~-  159 (352)
T TIGR02658        86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFP---TANDT-  159 (352)
T ss_pred             cCcEEeEEc-cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEE---ecCCc-
Confidence            988765432 111  1   2233478999999953333334588999999999999998864221 11111   11111 


Q ss_pred             EEEEecCCeEEEEEcCCCCceE-----EecCCCCce-EEEEEcc-CCCEEEEEecCCCCceeEEEEeCCCC-----eeee
Q 001352          503 IFSISVDGKIKAWLYDSLGARV-----DYDAPGLGC-TRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEG-----AIKR  570 (1093)
Q Consensus       503 l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~v-~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~-----~~~~  570 (1093)
                      ...-+.||......++......     .+......+ ..-.|++ +|+++.+..     ++.|++.|+...     ....
T Consensus       160 ~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~  234 (352)
T TIGR02658       160 FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIE  234 (352)
T ss_pred             cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceee
Confidence            2233445554444333322211     111100000 0014455 888887765     367999995433     2232


Q ss_pred             eeeccc----ccCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC
Q 001352          571 TYQGLQ----LQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT  636 (1093)
Q Consensus       571 ~~~~~~----~~~~~v~~v~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  636 (1093)
                      .+....    ...+.+.-++++++++++++..          ..+.|.++|..+++.+..+....   .+..++++||++
T Consensus       235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgk  311 (352)
T TIGR02658       235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAK  311 (352)
T ss_pred             eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCC
Confidence            222111    0123344599999999988843          22579999999999999988653   478999999999


Q ss_pred             -EEEEEE-CCCeEEEEEcCCCceeeec
Q 001352          637 -LLAVIA-NENRIKILETPESNSVDAA  661 (1093)
Q Consensus       637 -~l~~~~-~dg~i~iw~~~~~~~~~~~  661 (1093)
                       +|++.. .++.|.++|..+.+.+..+
T Consensus       312 p~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       312 PLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             eEEEEeCCCCCcEEEEECcCCeEEeee
Confidence             777666 5788999999999888776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.39  E-value=5e-11  Score=118.12  Aligned_cols=340  Identities=13%  Similarity=0.168  Sum_probs=203.9

Q ss_pred             eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352          567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  645 (1093)
Q Consensus       567 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  645 (1093)
                      ..++.++|+.   +.++....-|..+.+++.+.|.+++||- .+.++.-..+.... ...+.++.+.++.+.|++|-.+|
T Consensus        15 ~ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P~~~~~~~y~~e~~~L~vg~~ng   90 (404)
T KOG1409|consen   15 ELLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-PSPCSAMEYVSESRRLYVGQDNG   90 (404)
T ss_pred             hhhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-CCCceEeeeeccceEEEEEEecc
Confidence            3456677776   7777777788888999999999999995 44455444443322 34688999999999999999999


Q ss_pred             eEEEEEcCCC----ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccC
Q 001352          646 RIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP  721 (1093)
Q Consensus       646 ~i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~  721 (1093)
                      ++.-+.+...    ...+....|...+..+-|+-                      ...++++.+.|..+. |.      
T Consensus        91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~----------------------~~e~V~s~~~dk~~~-~h------  141 (404)
T KOG1409|consen   91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL----------------------THEWVLSTGKDKQFA-WH------  141 (404)
T ss_pred             eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC----------------------CceeEEEeccccceE-EE------
Confidence            9988876532    33344445555555555542                      223333333322210 10      


Q ss_pred             ccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCC
Q 001352          722 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN  801 (1093)
Q Consensus       722 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  801 (1093)
                                          ++ ..|.         .+--|.                             +.       
T Consensus       142 --------------------c~-e~~~---------~lg~Y~-----------------------------~~-------  155 (404)
T KOG1409|consen  142 --------------------CT-ESGN---------RLGGYN-----------------------------FE-------  155 (404)
T ss_pred             --------------------ee-ccCC---------cccceE-----------------------------ee-------
Confidence                                00 0000         000000                             00       


Q ss_pred             CCCCeeEEEEccCCCEEEEEe-CCeEEEEE--ccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352          802 SQEAVPCFALSKNDAYLFSAS-GGVISLYI--VMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  878 (1093)
Q Consensus       802 ~~~~v~~l~~s~dg~~la~~~-dg~i~iwd--~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~  878 (1093)
                        ...+++.+.-.  +...|. .|.|.+-.  ......+.++.+|.+.+++++|.| ..++|.+|..|..+.+||+...+
T Consensus       156 --~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~  230 (404)
T KOG1409|consen  156 --TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRK  230 (404)
T ss_pred             --ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCc
Confidence              00000000000  122222 23333332  234567788999999999999999 88999999999999999998654


Q ss_pred             e-eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecC-------------------------CC
Q 001352          879 V-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP-------------------------DG  932 (1093)
Q Consensus       879 ~-~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-------------------------~~  932 (1093)
                      - ...+.+|.+.|..+...+--+.|.+++.||.|.+|+.+........-+..-                         ..
T Consensus       231 g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h  310 (404)
T KOG1409|consen  231 GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQH  310 (404)
T ss_pred             ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhh
Confidence            3 367789999999999988889999999999999999986443321110000                         00


Q ss_pred             cc-cCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcce----eeeeecCC--CCCEEEEEEccCCCEEEEEeCCCcEEE
Q 001352          933 VM-TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC----LKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSI 1005 (1093)
Q Consensus       933 ~~-~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~----~~~~~~~h--~~~v~~~~fs~dg~~l~t~~~dg~v~v 1005 (1093)
                      |- ..+..+-..+-|.-..+...+.+-.+++-|.-....    ...+...|  ...|+.+.+-.+-.+|+|+|.|+.|.|
T Consensus       311 ~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~i  390 (404)
T KOG1409|consen  311 HCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKI  390 (404)
T ss_pred             hhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEE
Confidence            00 000011111112222222224444455554321110    01112223  457899999999899999999999999


Q ss_pred             EEcCC
Q 001352         1006 HEASN 1010 (1093)
Q Consensus      1006 wd~~~ 1010 (1093)
                      ||+.+
T Consensus       391 wd~~~  395 (404)
T KOG1409|consen  391 WDVRS  395 (404)
T ss_pred             Eechh
Confidence            99975

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.38  E-value=5.5e-11  Score=117.68  Aligned_cols=155  Identities=12%  Similarity=0.185  Sum_probs=108.7

Q ss_pred             EEEEEcCCCCCEEEEEeC----------CCeEEEEEcCC-cceeeeccc-ccCCeEEEEEeCCCCEEEEE--eCCCcEEE
Q 001352          848 TSLAFNPHDNNVIAIGMD----------DSTILIYNARS-SEVISKLEG-HSKRVTGLVFSDALNILVSS--GGDAQIFV  913 (1093)
Q Consensus       848 ~~l~~s~~d~~~lasg~~----------dg~i~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~--s~dg~i~i  913 (1093)
                      ..+.|+| .|.+|++-..          -|...+|.++. +..+..+.- ..++|.+++|+|+|+.+|..  ..++.|.+
T Consensus         9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            4678888 6766665333          13455555532 233344432 44579999999999987654  35779999


Q ss_pred             EeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEe----CCeEEEEEcCCcceeeeeecCCCCCEEEEEEcc
Q 001352          914 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEELTCLKQWFPISSVPISQATFSC  989 (1093)
Q Consensus       914 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~  989 (1093)
                      ||++..      .+.....     ..+..+.|||+|++|+++.    .|.+.+||+.+.+.+....  | ..++.++|||
T Consensus        88 yd~~~~------~i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~-~~~t~~~WsP  153 (194)
T PF08662_consen   88 YDVKGK------KIFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H-SDATDVEWSP  153 (194)
T ss_pred             EcCccc------EeEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c-CcEEEEEEcC
Confidence            999732      2222221     2467899999999999842    4679999999888876632  3 3578999999


Q ss_pred             CCCEEEEEeC------CCcEEEEEcCCCceEEEec
Q 001352          990 DCRMVFTSFV------DGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       990 dg~~l~t~~~------dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                      ||++|+|++.      |..++||+.. |+++.+..
T Consensus       154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            9999999875      6889999985 66665543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=5e-10  Score=126.17  Aligned_cols=243  Identities=12%  Similarity=0.077  Sum_probs=150.5

Q ss_pred             CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE---EEEcC--CEEEEEEccCCCcc
Q 001352          358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDA  432 (1093)
Q Consensus       358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la---s~~~d--~~i~iwd~~~~~~~  432 (1093)
                      ..|.+.|...+....                    +......+.+-+|||||+.++   +...+  ..|.+.++.+|+..
T Consensus       165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~  224 (428)
T PRK01029        165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK  224 (428)
T ss_pred             ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence            367777877665432                    444556677889999998633   33333  35888898887633


Q ss_pred             cceEEeccccccEEEEEeeCCCCcEEEEEEcC----CCcEEEEECCCC---ceeEEeecCCCCeEEeeecccCCccEEEE
Q 001352          433 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFS  505 (1093)
Q Consensus       433 ~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~----d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  505 (1093)
                      +    +....+.....+|||||+++ +++...    +..+.+|++.++   +.......+.......+|  ++||+.|+.
T Consensus       225 ~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf  297 (428)
T PRK01029        225 K----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVF  297 (428)
T ss_pred             E----eecCCCCccceEECCCCCEE-EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEE
Confidence            2    23344455678999999953 333332    323455777653   333333222233445566  557777766


Q ss_pred             Ee-cCCeEEEEEc--CC-CCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCC
Q 001352          506 IS-VDGKIKAWLY--DS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS  581 (1093)
Q Consensus       506 ~~-~dg~i~vwd~--~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~  581 (1093)
                      .+ .+|...+|.+  .. ......+......+....|+|||+.|+..+.. .+...|.+||+.+++......+ .   ..
T Consensus       298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~  372 (428)
T PRK01029        298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---EN  372 (428)
T ss_pred             EECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CC
Confidence            55 4676566644  32 22233344444566788999999999987643 2356799999998876544332 2   34


Q ss_pred             eEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEEEEecCCCCCCCceEEEecCC
Q 001352          582 VSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  635 (1093)
Q Consensus       582 v~~v~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  635 (1093)
                      +....|+|||+.|+..+.   ...|+++|+.+++........   ..+...+|+|-.
T Consensus       373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~---g~~~~p~Ws~~~  426 (428)
T PRK01029        373 KESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGS---GEKRFPSWGAFP  426 (428)
T ss_pred             ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC---CcccCceecCCC
Confidence            667899999998876442   356889999887765544322   235667888743

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.35  E-value=2.8e-10  Score=112.73  Aligned_cols=358  Identities=13%  Similarity=0.196  Sum_probs=213.1

Q ss_pred             ccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc-----eeEEeecCC------------CCeEEeeecccCCccEE
Q 001352          441 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHG------------APVYSLCPHAKENIHFI  503 (1093)
Q Consensus       441 h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~~~~~l  503 (1093)
                      ....|.++.|..+|.  +|+||..+|.|.++.-....     ....++.|.            ..|..+.|....+...+
T Consensus        24 eadiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   24 EADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             hhcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            345789999999999  89999999999999643222     223344443            35777888888888889


Q ss_pred             EEEecCCeEEEEEcCCCCceEE-----ecCCCCceEEEEE---ccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecc
Q 001352          504 FSISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  575 (1093)
Q Consensus       504 ~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~v~~~~~---s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  575 (1093)
                      +..+.|.+|++|.+........     .......++++..   .|....+.                   ..+.+.+.. 
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aN-  161 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYAN-  161 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccc-
Confidence            9999999999998876544331     1111122222221   11111110                   112233322 


Q ss_pred             cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eEEEEecCC-----CCCCCceEEEec-CCCEEEEEECCCeEE
Q 001352          576 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ-LLTTIDAGG-----GLPENPRICFNK-NGTLLAVIANENRIK  648 (1093)
Q Consensus       576 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~-----~~~~v~~v~~s~-~~~~l~~~~~dg~i~  648 (1093)
                       .|...|.++.++.|...++++. |=.|.+|+++--. .........     -+.-|++..|+| ..+.++..+..|+|+
T Consensus       162 -aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  162 -AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             -cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence             1237799999999988877764 6679999987432 222222211     112377888999 456778888899999


Q ss_pred             EEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccc
Q 001352          649 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL  728 (1093)
Q Consensus       649 iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~  728 (1093)
                      +-|++.........                                                 +++.             
T Consensus       240 LcDmR~~aLCd~hs-------------------------------------------------KlfE-------------  257 (433)
T KOG1354|consen  240 LCDMRQSALCDAHS-------------------------------------------------KLFE-------------  257 (433)
T ss_pred             Eeechhhhhhcchh-------------------------------------------------hhhc-------------
Confidence            99988542111000                                                 0000             


Q ss_pred             cCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeE
Q 001352          729 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC  808 (1093)
Q Consensus       729 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  808 (1093)
                      .|.            .|..+.+                                          .    .  +--..|..
T Consensus       258 epe------------dp~~rsf------------------------------------------f----s--eiIsSISD  277 (433)
T KOG1354|consen  258 EPE------------DPSSRSF------------------------------------------F----S--EIISSISD  277 (433)
T ss_pred             ccc------------CCcchhh------------------------------------------H----H--HHhhhhhc
Confidence            000            0000000                                          0    0  12345677


Q ss_pred             EEEccCCCEEEEEeCCeEEEEEc-cCceeEEEECCCCC------------C---eEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001352          809 FALSKNDAYLFSASGGVISLYIV-MTFKTILTIMPPSP------------T---ATSLAFNPHDNNVIAIGMDDSTILIY  872 (1093)
Q Consensus       809 l~~s~dg~~la~~~dg~i~iwd~-~~~~~~~~~~~~~~------------~---i~~l~~s~~d~~~lasg~~dg~i~iw  872 (1093)
                      +.|+++|+|+++-+--+|++||+ ...+++.+++.|..            .   -..++|+. ++.+++||+....+++|
T Consensus       278 vKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf  356 (433)
T KOG1354|consen  278 VKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVF  356 (433)
T ss_pred             eEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEe
Confidence            88888888888877788899988 34555555554431            2   24678998 88899999999999999


Q ss_pred             EcCCccee-eecccccCC--eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCC
Q 001352          873 NARSSEVI-SKLEGHSKR--VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  949 (1093)
Q Consensus       873 d~~~~~~~-~~l~~h~~~--V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg  949 (1093)
                      ++..|... .++......  ...+   ..-+.+.+++......+|--.            .+-.    ..+...+|+|..
T Consensus       357 ~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~------------ldf~----kkilh~aWhp~e  417 (433)
T KOG1354|consen  357 NLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA------------LDFR----KKILHTAWHPKE  417 (433)
T ss_pred             cCCCCcceeecccccccCCccccc---ccceeeecCCCccccccccch------------hhhh----hHHHhhccCCcc
Confidence            98766432 333332222  1111   112334444444332222110            0101    146778999999


Q ss_pred             CEEEEEeCCeEEEEE
Q 001352          950 TRFLLVHETHLAIYE  964 (1093)
Q Consensus       950 ~~l~~~~d~~i~vwd  964 (1093)
                      +.+|++.-+.+++|.
T Consensus       418 n~ia~aatnnlyif~  432 (433)
T KOG1354|consen  418 NSIAVAATNNLYIFQ  432 (433)
T ss_pred             ceeeeeecCceEEec
Confidence            999998777777763

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.34  E-value=7.9e-09  Score=113.79  Aligned_cols=270  Identities=14%  Similarity=0.214  Sum_probs=172.5

Q ss_pred             CcEEEEec--CCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc----CCEEEEEEccCC-C
Q 001352          358 GDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGG-S  430 (1093)
Q Consensus       358 g~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~----d~~i~iwd~~~~-~  430 (1093)
                      +.|.+|++  ++++......+                  .-......++++|++++|.++..    ++.|..|++... .
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~------------------~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g   74 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTV------------------AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG   74 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEE------------------EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT
T ss_pred             CcEEEEEEcCCCCCceEeeee------------------cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc
Confidence            67888888  55554332111                  13356677999999999999876    568999998875 3


Q ss_pred             cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC-CceeEE---ee----------cCCCCeEEeeecc
Q 001352          431 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYS---FE----------GHGAPVYSLCPHA  496 (1093)
Q Consensus       431 ~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~~---~~----------~h~~~v~~~~~~~  496 (1093)
                      .+...............++++|+++. ++++-..+|+|.++++.. |.....   +.          .......++.+  
T Consensus        75 ~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--  151 (345)
T PF10282_consen   75 TLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--  151 (345)
T ss_dssp             EEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE--
T ss_pred             eeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE--
Confidence            34333333334445678999999994 344445689999999987 443322   21          11234566777  


Q ss_pred             cCCccEEEEEe-cCCeEEEEEcCCCCc-e---EEe-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCee
Q 001352          497 KENIHFIFSIS-VDGKIKAWLYDSLGA-R---VDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI  568 (1093)
Q Consensus       497 ~~~~~~l~s~~-~dg~i~vwd~~~~~~-~---~~~-~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~--~~~~  568 (1093)
                      +++++++++.. ....|.+|+++.... +   ..+ ...+...+.++|+|+++++++...   ..+.|.++++.  ++..
T Consensus       152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~  228 (345)
T PF10282_consen  152 SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSL  228 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEE
T ss_pred             CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCce
Confidence            45666666654 446799999987662 1   122 234557889999999999988764   35567787776  4432


Q ss_pred             --eeeeecc---cccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC--CCce--EEEEecCCCCCCCceEEEecCCCEE
Q 001352          569 --KRTYQGL---QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN--KVQL--LTTIDAGGGLPENPRICFNKNGTLL  638 (1093)
Q Consensus       569 --~~~~~~~---~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~--~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l  638 (1093)
                        +......   .........+.++|+|++|+++. ..++|.+|++.  ++++  +..+...+.  ....++++|+|++|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l  306 (345)
T PF10282_consen  229 TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYL  306 (345)
T ss_dssp             EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEE
T ss_pred             eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEE
Confidence              2222221   10112578899999999988854 67789999983  3443  333433222  35789999999999


Q ss_pred             EEEEC-CCeEEEEEcC
Q 001352          639 AVIAN-ENRIKILETP  653 (1093)
Q Consensus       639 ~~~~~-dg~i~iw~~~  653 (1093)
                      +++.. ++.|.+|++.
T Consensus       307 ~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  307 YVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEETTTTEEEEEEEE
T ss_pred             EEEecCCCeEEEEEEe
Confidence            98874 6789999774

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=1.6e-10  Score=130.10  Aligned_cols=233  Identities=11%  Similarity=0.041  Sum_probs=144.0

Q ss_pred             hhccCCCCceeeeecCCCce--EEEEEccC--CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352          330 TLIEGSSSPMSMDFHPVQHT--LLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  405 (1093)
Q Consensus       330 ~l~~h~~~V~~~~~spdg~~--llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  405 (1093)
                      .|..+...+..-+|||||+.  ++++...+  ..|.+.++.+|+...                    +....+.....+|
T Consensus       179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~w  238 (428)
T PRK01029        179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTF  238 (428)
T ss_pred             EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEE
Confidence            34444556778899999975  33344444  358888988887554                    2223445567899


Q ss_pred             CCCCCEEEEEEc-----CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEE--ECCC-Cc
Q 001352          406 SPDGSLLGVAYS-----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DAVT-GS  477 (1093)
Q Consensus       406 s~dg~~las~~~-----d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw--d~~~-~~  477 (1093)
                      ||||++||..+.     +-.+.+|++.++..-.......++.......+|+|||+. ++++...+|...+|  ++.. +.
T Consensus       239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g~  317 (428)
T PRK01029        239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEGQ  317 (428)
T ss_pred             CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECccccc
Confidence            999999998753     223445777653211111112223344567899999995 23334456655555  4432 33


Q ss_pred             eeEEeecCCCCeEEeeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001352          478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  554 (1093)
Q Consensus       478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~  554 (1093)
                      ....+..+...+....|+  +||+.|+..+.+   ..|.+||+.+++...... ....+....|+|||+.|+..... .+
T Consensus       318 ~~~~lt~~~~~~~~p~wS--PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~-~g  393 (428)
T PRK01029        318 SPRLLTKKYRNSSCPAWS--PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGN-SN  393 (428)
T ss_pred             ceEEeccCCCCccceeEC--CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECC-CC
Confidence            344555455556666774  567777766543   368999998776544332 23456778999999998876543 34


Q ss_pred             ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCC
Q 001352          555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK  591 (1093)
Q Consensus       555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~  591 (1093)
                      ...|+++|+.+++......+ .   +.+...+|+|..
T Consensus       394 ~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~~  426 (428)
T PRK01029        394 ESELYLISLITKKTRKIVIG-S---GEKRFPSWGAFP  426 (428)
T ss_pred             CceEEEEECCCCCEEEeecC-C---CcccCceecCCC
Confidence            56799999988876554432 2   445667787753

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.33  E-value=1.3e-10  Score=117.46  Aligned_cols=117  Identities=13%  Similarity=0.173  Sum_probs=103.9

Q ss_pred             CCCeeEEEEccC--CCEEEEEe-CCeEEEEEccCc-eeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352          803 QEAVPCFALSKN--DAYLFSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  878 (1093)
Q Consensus       803 ~~~v~~l~~s~d--g~~la~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~  878 (1093)
                      .-+++++.|-+.  ...+|++. -+.+++||...+ +++..+.-...+++++...| +++++++|..-|.+..+|+.+++
T Consensus       202 PvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~k  280 (412)
T KOG3881|consen  202 PVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGK  280 (412)
T ss_pred             eeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCce
Confidence            345667888887  78888888 599999999876 45677777788999999999 99999999999999999999999


Q ss_pred             eeee-cccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001352          879 VISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  920 (1093)
Q Consensus       879 ~~~~-l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~  920 (1093)
                      .... +.+-.+.|+++..+|.+++||++|-|+.|||+|+++.+
T Consensus       281 l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  281 LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence            8876 88999999999999999999999999999999999854

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=99.33  E-value=7e-12  Score=119.63  Aligned_cols=168  Identities=22%  Similarity=0.268  Sum_probs=126.8

Q ss_pred             hhHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh---------HHHHHHHhcCcCHHHHHHHhccCC--CcCCccccchh
Q 001352            4 LNKDLVFLILQFLNEEGFTESAHMLERESRFYFD---------MKFFEDMILDGKWEDVEQYLSSFT--KVDDNRYSTKI   72 (1093)
Q Consensus         4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~G~w~~~~~~l~~~~--~~~~~~~~~~~   72 (1093)
                      -++|+-|||+.||-..||.++|..+.+|+|+...         ...+|.+|..|+.++|++.+.++.  .++.+.   .+
T Consensus        25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~---~l  101 (228)
T KOG2659|consen   25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR---EL  101 (228)
T ss_pred             chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch---hH
Confidence            4688999999999999999999999999999761         578899999999999999999872  234332   38


Q ss_pred             hhHHHhhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCccccccc-ccccCCChHHHHHHHHHHHhh
Q 001352           73 YFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELL-SKYYGDALSARKNMMLELKQI  151 (1093)
Q Consensus        73 ~~~i~~~~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~R~~l~~~l~~~  151 (1093)
                      .|.+++|+++||+..+...+|++++|++|.|....++..++.|...|.+-.++..... ..| --....|.++...+...
T Consensus       102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~-l~~~s~R~kvA~~vN~a  180 (228)
T KOG2659|consen  102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAE-LLSQSLRQKVASEVNSA  180 (228)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHH-HHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999888888888887776444322110 000 00134577777777766


Q ss_pred             cccCcccccccCCCCCcchHHHHHHHHhHHhh
Q 001352          152 IEANPILQGKLKFPSIKRQRLRRLINQSLNWQ  183 (1093)
Q Consensus       152 ~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q  183 (1093)
                      |-...-.        --..+|..||+.-+..|
T Consensus       181 iL~~~~~--------~~~~~l~~llk~~~~~~  204 (228)
T KOG2659|consen  181 ILASQEH--------ESEPKLPFLLKLISWAQ  204 (228)
T ss_pred             HHHHhcc--------cccchHHHHHHHHHHHH
Confidence            5542220        12557888885554444

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=6.8e-10  Score=127.27  Aligned_cols=237  Identities=14%  Similarity=0.101  Sum_probs=150.5

Q ss_pred             cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC---CEEEEEEccCCCcccce
Q 001352          359 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQ  435 (1093)
Q Consensus       359 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d---~~i~iwd~~~~~~~~~~  435 (1093)
                      .|.++|.+.+....                    +..+...+...+|||||++|+..+.+   ..|.+||+.+++...  
T Consensus       180 ~l~~~d~~g~~~~~--------------------l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--  237 (430)
T PRK00178        180 TLQRSDYDGARAVT--------------------LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--  237 (430)
T ss_pred             EEEEECCCCCCceE--------------------EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--
Confidence            47788887654322                    34577789999999999999887644   369999999876322  


Q ss_pred             EEeccccccEEEEEeeCCCCcEEEEEEcCCC--cEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEec-CC--
Q 001352          436 LEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--  510 (1093)
Q Consensus       436 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--  510 (1093)
                        +....+.+...+|+|||+. ++++.+.++  .|.+||+.+++.. .+..+........|+  +||..++..+. +|  
T Consensus       238 --l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~  311 (430)
T PRK00178        238 --ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKP  311 (430)
T ss_pred             --ccCCCCCcCCeEECCCCCE-EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEEC--CCCCEEEEEECCCCCc
Confidence              2233344567899999995 333555555  5888899887654 454455555556664  46666655543 34  


Q ss_pred             eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC
Q 001352          511 KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA  590 (1093)
Q Consensus       511 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~  590 (1093)
                      .|.++++.+++.... ...........|+|||+.++...... +...|.++|+.+++....... .    ......|+|+
T Consensus       312 ~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg~~~~lt~~-~----~~~~p~~spd  384 (430)
T PRK00178        312 QIYKVNVNGGRAERV-TFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRGSVRILTDT-S----LDESPSVAPN  384 (430)
T ss_pred             eEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCCCEEEccCC-C----CCCCceECCC
Confidence            466677766554322 22223334578999999998876432 345699999998865433222 1    1224589999


Q ss_pred             CCEEEEEeCC---CcEEEEECCCCceEEEEecCCCCCCCceEEEec
Q 001352          591 KDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  633 (1093)
Q Consensus       591 ~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  633 (1093)
                      |+.++..+.+   ..+++++... .....+....  ..+...+|+|
T Consensus       385 g~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~--g~~~~p~ws~  427 (430)
T PRK00178        385 GTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ--GEVREPSWSP  427 (430)
T ss_pred             CCEEEEEEecCCceEEEEEECCC-CceEECcCCC--CCcCCCccCC
Confidence            9999876643   3467777754 3333443322  2355666766

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=6.8e-10  Score=126.27  Aligned_cols=223  Identities=15%  Similarity=0.105  Sum_probs=140.8

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcC---CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCc--
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--  467 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--  467 (1093)
                      +..+...+.+.+|||||++|+..+.+   ..|.+||+.+++...    +....+.....+|+|||+. ++++.+.++.  
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~  287 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE  287 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence            34467789999999999999987543   268899998875321    2222333457899999996 3345566664  


Q ss_pred             EEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEec-CCe--EEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001352          468 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  544 (1093)
Q Consensus       468 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~  544 (1093)
                      |.+||+.+++. ..+..+.......+|++  |++.|+..+. ++.  |.++|+.+++... +..........+|+|||++
T Consensus       288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~  363 (448)
T PRK04792        288 IYVVDIATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRS  363 (448)
T ss_pred             EEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCE
Confidence            77889887764 34444555556667754  6666665543 444  5556666554332 2222223345789999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceEEEEecCC
Q 001352          545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DH--VIKIWDMNKVQLLTTIDAGG  621 (1093)
Q Consensus       545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~  621 (1093)
                      ++..+.. .+...|.++|+.+++....... .    ......|+|+|+.++..+. +|  .+++++. +|.....+....
T Consensus       364 l~~~~~~-~g~~~I~~~dl~~g~~~~lt~~-~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~  436 (448)
T PRK04792        364 MIMVNRT-NGKFNIARQDLETGAMQVLTST-R----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ  436 (448)
T ss_pred             EEEEEec-CCceEEEEEECCCCCeEEccCC-C----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence            9887653 2345688889888865432222 1    1123479999998887553 33  3677786 455555555432


Q ss_pred             CCCCCceEEEec
Q 001352          622 GLPENPRICFNK  633 (1093)
Q Consensus       622 ~~~~v~~v~~s~  633 (1093)
                        ..+...+|+|
T Consensus       437 --g~~~~p~Wsp  446 (448)
T PRK04792        437 --GEVKSPAWSP  446 (448)
T ss_pred             --CCcCCCccCC
Confidence              2356677776

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=1.9e-10  Score=131.92  Aligned_cols=226  Identities=13%  Similarity=0.093  Sum_probs=142.9

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccC--CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      +.+..+.+.+...+|||||++|+.+...+  ..|.+||+.+|+...                    +....+.+.+.+||
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~~S  251 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPAWS  251 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeEEC
Confidence            44556677899999999999755554333  368999999886543                    22233445678999


Q ss_pred             CCCCEEEEE-EcCC--EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC--cEEEEECCCCceeEE
Q 001352          407 PDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYS  481 (1093)
Q Consensus       407 ~dg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~  481 (1093)
                      |||++|+.. +.++  .|.+||+.+++..    .+..+........|+|||+. ++++...++  .|.++|+.+++... 
T Consensus       252 pDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~~~-  325 (430)
T PRK00178        252 PDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRAER-  325 (430)
T ss_pred             CCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-
Confidence            999998854 3444  6888899887532    34455566777899999995 233443343  57778888877543 


Q ss_pred             eecCCCCeEEeeecccCCccEEEEEecC-C--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352          482 FEGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  558 (1093)
Q Consensus       482 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i  558 (1093)
                      +...........|  ++|++.++..+.+ +  .|.+||+.++........  .......|+|||+.++..+.. .+...|
T Consensus       326 lt~~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~-~g~~~l  400 (430)
T PRK00178        326 VTFVGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ-QGRGVL  400 (430)
T ss_pred             eecCCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec-CCceEE
Confidence            2211122233455  4566777766543 3  477888887654332222  222356899999999887653 235678


Q ss_pred             EEEeCCCCeeeeeeecccccCCCeEEEEEcC
Q 001352          559 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  589 (1093)
Q Consensus       559 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~  589 (1093)
                      ++++...+ ..+.+....   +.+...+|+|
T Consensus       401 ~~~~~~g~-~~~~l~~~~---g~~~~p~ws~  427 (430)
T PRK00178        401 MLVSINGR-VRLPLPTAQ---GEVREPSWSP  427 (430)
T ss_pred             EEEECCCC-ceEECcCCC---CCcCCCccCC
Confidence            88887543 333443332   4455666765

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.31  E-value=6.2e-10  Score=127.73  Aligned_cols=210  Identities=15%  Similarity=0.075  Sum_probs=138.5

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcC---CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC--c
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T  467 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~  467 (1093)
                      +..+...+.+.+|||||++||.++.+   ..|++||+.+++..    .+..+.+.+.+++|+|||+. ++++.+.++  .
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~  259 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD  259 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence            44566789999999999999988644   47999999987532    23345566778999999985 334555444  5


Q ss_pred             EEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEec-CC--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCE
Q 001352          468 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  544 (1093)
Q Consensus       468 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~  544 (1093)
                      |.+||+.++... .+..+........|+  +|++.|+..+. ++  .|.++++.+.+. ..+...........|+|+|++
T Consensus       260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~  335 (417)
T TIGR02800       260 IYVMDLDGKQLT-RLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL  335 (417)
T ss_pred             EEEEECCCCCEE-ECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence            889998887643 344454444455664  46777766554 33  577777766543 333334456677899999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceEEEEe
Q 001352          545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTID  618 (1093)
Q Consensus       545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~  618 (1093)
                      ++.+.... +...|.+||+.++.... +...    .......|+|++++|+..+.++   .+++.+. ++.....+.
T Consensus       336 i~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~----~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~  405 (417)
T TIGR02800       336 IAFVHREG-GGFNIAVMDLDGGGERV-LTDT----GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP  405 (417)
T ss_pred             EEEEEccC-CceEEEEEeCCCCCeEE-ccCC----CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence            99887533 34579999998865432 2221    1234558999999998876554   3555554 344444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.30  E-value=2.4e-10  Score=113.08  Aligned_cols=162  Identities=19%  Similarity=0.336  Sum_probs=113.9

Q ss_pred             EEEEECCCCCEEEEEEc----------CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEE
Q 001352          401 NRVVWSPDGSLLGVAYS----------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  470 (1093)
Q Consensus       401 ~~v~~s~dg~~las~~~----------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  470 (1093)
                      ..+.|+|+|++|++-..          -+...+|.++..........+. ..++|.+++|+|+|+.+.+++|..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            45889999999886543          1246666664332222221222 345799999999999755666777889999


Q ss_pred             EECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001352          471 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  547 (1093)
Q Consensus       471 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~  547 (1093)
                      ||++ ++.+..+.  ...++.+.|+|  +|+++++++.+   |.|.+||.++.+.+....  ...+..++|+|||+++++
T Consensus        88 yd~~-~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   88 YDVK-GKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT  160 (194)
T ss_pred             EcCc-ccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence            9986 77777664  56778888854  67899988754   679999999666655543  335789999999999999


Q ss_pred             EecC--CCCceeEEEEeCCCCeeeee
Q 001352          548 CGTS--KEGESFLVEWNESEGAIKRT  571 (1093)
Q Consensus       548 ~~~~--~~~~~~i~iwd~~~~~~~~~  571 (1093)
                      +...  ...++.+.||+.. |+.+..
T Consensus       161 a~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             EEeccceeccccEEEEEec-CeEeEe
Confidence            8753  1235668999974 555444

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=2.8e-10  Score=129.43  Aligned_cols=226  Identities=15%  Similarity=0.110  Sum_probs=140.0

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCC--cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      +.+..+...+.+.+|||||++++.+...++  .|.+||+.+++....                    ....+.....+||
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~wS  270 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRFS  270 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeEC
Confidence            344556668899999999997555544333  588899988875431                    1122334568999


Q ss_pred             CCCCEEEEE-EcCC--EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC--cEEEEECCCCceeEE
Q 001352          407 PDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYS  481 (1093)
Q Consensus       407 ~dg~~las~-~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~  481 (1093)
                      |||+.|+.. +.++  .|.+||+.+++..    .+..+.......+|+|||+. ++++...++  .|.++|+.+++... 
T Consensus       271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~-  344 (448)
T PRK04792        271 PDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR-  344 (448)
T ss_pred             CCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-
Confidence            999988764 4555  4788888876532    34445556778899999995 333444344  46667887776543 


Q ss_pred             eecCCCCeEEeeecccCCccEEEEEec-CCe--EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352          482 FEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  558 (1093)
Q Consensus       482 ~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i  558 (1093)
                      +..........+|  ++||++|+..+. ++.  |.++|+.++.... +... .......|+|||+.++..... .+...+
T Consensus       345 Lt~~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~-~g~~~l  419 (448)
T PRK04792        345 LTFEGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTY-QGKQVL  419 (448)
T ss_pred             EecCCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEec-CCceEE
Confidence            2212222233456  456667766554 443  4556766655432 2211 122345899999999887653 345668


Q ss_pred             EEEeCCCCeeeeeeecccccCCCeEEEEEcC
Q 001352          559 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  589 (1093)
Q Consensus       559 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~  589 (1093)
                      ++++. +|...+.+....   +.+...+|+|
T Consensus       420 ~~~~~-~G~~~~~l~~~~---g~~~~p~Wsp  446 (448)
T PRK04792        420 AAVSI-DGRFKARLPAGQ---GEVKSPAWSP  446 (448)
T ss_pred             EEEEC-CCCceEECcCCC---CCcCCCccCC
Confidence            88887 455555555443   4566677776

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.28  E-value=5.4e-11  Score=117.92  Aligned_cols=358  Identities=14%  Similarity=0.140  Sum_probs=228.8

Q ss_pred             ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE--EecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001352          477 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEG  554 (1093)
Q Consensus       477 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~  554 (1093)
                      ..++.++||...++....-+..+  -+++.+.|.++++|--+...+..  .......+++++.+.++.+.|+++-.    
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~----   88 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD----   88 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----
Confidence            34567788998888887766554  59999999999999655444332  23334567899999999999998875    


Q ss_pred             ceeEEEEeC----CCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352          555 ESFLVEWNE----SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  630 (1093)
Q Consensus       555 ~~~i~iwd~----~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  630 (1093)
                      .+.+.-+.+    +.....+.+..|.   ..+..+-|+-...++++.+.|..+.---.+.+..+........   ...+.
T Consensus        89 ngtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~  162 (404)
T KOG1409|consen   89 NGTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQ  162 (404)
T ss_pred             cceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCc
Confidence            444665543    3445566677776   8899999998889999999998776544555555433322211   11222


Q ss_pred             EecCCCEEEEEECCCeEEEEEcC--CCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352          631 FNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  708 (1093)
Q Consensus       631 ~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  708 (1093)
                      +.-.  +..+|...|.+.+..+.  .-..+..+.+|...+.++.+.                      +....+.++..|
T Consensus       163 ~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd----------------------~~~~~LfSg~~d  218 (404)
T KOG1409|consen  163 FDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD----------------------PGQRLLFSGASD  218 (404)
T ss_pred             eeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc----------------------CCCcEEEecccc
Confidence            2221  56667677777776554  446788899999999999997                      567778999999


Q ss_pred             ccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccc-----cCCcc
Q 001352          709 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK-----VPPRL  783 (1093)
Q Consensus       709 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-----~~~~~  783 (1093)
                      ..+.+||+..........     .+|...|..+...+--+.+++++.||.+.+|++........+.....     ..+..
T Consensus       219 ~~vi~wdigg~~g~~~el-----~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpff  293 (404)
T KOG1409|consen  219 HSVIMWDIGGRKGTAYEL-----QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFF  293 (404)
T ss_pred             CceEEEeccCCcceeeee-----ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHH
Confidence            999999987544333322     35888888888888889999999999999999987654333222211     22333


Q ss_pred             cCCCCCCceeeccCCCC--CC-CCCeeEEEEccCCCEEEEEeCCeEEEEEcc-------CceeEEEECCCCCCeEEEEEc
Q 001352          784 YQPRHGPQFMVNDTTDS--NS-QEAVPCFALSKNDAYLFSASGGVISLYIVM-------TFKTILTIMPPSPTATSLAFN  853 (1093)
Q Consensus       784 ~~~~~~~~~~~~~~~~~--~~-~~~v~~l~~s~dg~~la~~~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~s  853 (1093)
                      |+...--......+...  .+ ...+...+-+....+...+..-.+++-|.-       +...+..+......|+++.+.
T Consensus       294 wn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlq  373 (404)
T KOG1409|consen  294 WNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQ  373 (404)
T ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhh
Confidence            33221100000000000  00 112222222222222222323334444421       112233443344679999998


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCC
Q 001352          854 PHDNNVIAIGMDDSTILIYNARS  876 (1093)
Q Consensus       854 ~~d~~~lasg~~dg~i~iwd~~~  876 (1093)
                      . .-.+|+|++.|..|+|||+..
T Consensus       374 e-tlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  374 E-TLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             h-hccceeecCCceEEEEEechh
Confidence            8 677999999999999999864

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.28  E-value=1.4e-09  Score=124.74  Aligned_cols=205  Identities=14%  Similarity=0.120  Sum_probs=138.8

Q ss_pred             CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCC---CeEEEEEcCCcceeeecccccCCeEEEEEeCCCC
Q 001352          824 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN  900 (1093)
Q Consensus       824 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~  900 (1093)
                      ..|.++|... ...+.+..+...+...+|+| |+++|+.+..+   ..|++||+.+++... +..+.+.+.+++|+|||+
T Consensus       170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       170 YELQVADYDG-ANPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             ceEEEEcCCC-CCCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence            3578888753 44455555667788999999 88888887654   489999999876533 334556677899999999


Q ss_pred             EEEE-EeCCC--cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeC----CeEEEEEcCCcceeee
Q 001352          901 ILVS-SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE----THLAIYEAEELTCLKQ  973 (1093)
Q Consensus       901 ~l~s-~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d----~~i~vwd~~~~~~~~~  973 (1093)
                      .|+. .+.++  .|.+|++.++....   +.   .+..   .....+|+|||+.|+...+    ..|+++|+.+++....
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~---l~---~~~~---~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l  317 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTR---LT---NGPG---IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL  317 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEE---CC---CCCC---CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            8764 44444  58889998765222   11   1111   2446789999999887432    2688889887765432


Q ss_pred             eecCCCCCEEEEEEccCCCEEEEEeCCC---cEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEE
Q 001352          974 WFPISSVPISQATFSCDCRMVFTSFVDG---TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1050 (1093)
Q Consensus       974 ~~~~h~~~v~~~~fs~dg~~l~t~~~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~ 1050 (1093)
                        ..+...+..+.|+|||++|+.++.++   .|.+||+.++.... +.      ..   .  .....+|+| |++.|+.+
T Consensus       318 --~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~------~~---~--~~~~p~~sp-dg~~l~~~  382 (417)
T TIGR02800       318 --TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LT------DT---G--LDESPSFAP-NGRMILYA  382 (417)
T ss_pred             --ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-cc------CC---C--CCCCceECC-CCCEEEEE
Confidence              22345677889999999999888776   78999998865431 11      11   0  012346898 57777777


Q ss_pred             eCCCc
Q 001352         1051 LTNGE 1055 (1093)
Q Consensus      1051 ~~dg~ 1055 (1093)
                      +.++.
T Consensus       383 ~~~~~  387 (417)
T TIGR02800       383 TTRGG  387 (417)
T ss_pred             EeCCC
Confidence            77653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.27  E-value=3.1e-10  Score=112.45  Aligned_cols=267  Identities=13%  Similarity=0.203  Sum_probs=174.5

Q ss_pred             CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC--E
Q 001352          334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS--L  411 (1093)
Q Consensus       334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~--~  411 (1093)
                      ..+-|.+|.|..+|.+ ||+|..+|.|.++.-+.... ..+.+.-. ...-...|....--.-...|..+.|.+++.  .
T Consensus        24 eadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~-~ey~~~t~-fqshepEFDYLkSleieEKinkIrw~~~~n~a~  100 (433)
T KOG1354|consen   24 EADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYK-GEYNFQTE-FQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE  100 (433)
T ss_pred             hhcceeeEEeecccce-EeecCCCCeEEEeecccccc-cceeeeee-eeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence            4568999999999995 99999999999997543221 01111100 000000111100111246799999998764  4


Q ss_pred             EEEEEcCCEEEEEEccCCCccc------------------c--------------eEE-eccccccEEEEEeeCCCCcEE
Q 001352          412 LGVAYSKHIVQLYAYHGGSDAR------------------Q--------------QLE-IDAHVGNVNDLAFSAPCKQIS  458 (1093)
Q Consensus       412 las~~~d~~i~iwd~~~~~~~~------------------~--------------~~~-~~~h~~~v~~~~~s~d~~~l~  458 (1093)
                      ++..+.|.+|++|.+.......                  .              ... -.+|+.-|++++++.|+.  .
T Consensus       101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E--t  178 (433)
T KOG1354|consen  101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE--T  178 (433)
T ss_pred             EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--e
Confidence            5566789999999986432111                  0              011 136788899999999998  5


Q ss_pred             EEEEcCCCcEEEEECCCCceeE---EeecC-----CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE----Ee
Q 001352          459 VITCGDDKTIKVWDAVTGSRTY---SFEGH-----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DY  526 (1093)
Q Consensus       459 l~s~~~d~~i~vwd~~~~~~~~---~~~~h-----~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~~  526 (1093)
                      ++++. |=.|.+|+++--..-.   .++.+     +..|++..|+|... ..++-.+..|+|++.|++.....-    .+
T Consensus       179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence            66655 7789999987443222   22222     34577888888754 578888889999999998432111    11


Q ss_pred             cCC------------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeC-CCCeeeeeeeccccc---------CCC---
Q 001352          527 DAP------------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAIKRTYQGLQLQ---------HNS---  581 (1093)
Q Consensus       527 ~~~------------~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~-~~~~~~~~~~~~~~~---------~~~---  581 (1093)
                      ..+            -..|..+.|+++|+++++-.     -..|.+||+ ...+++.+++.|..-         .+.   
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~Ifd  331 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFD  331 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhh
Confidence            111            12578899999999999853     356999999 456677777666411         122   


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001352          582 VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  612 (1093)
Q Consensus       582 v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~  612 (1093)
                      -..++|+.++.++++|+....+++++...|.
T Consensus       332 KFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  332 KFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             eeEEEEcCCcceEecccccceEEEecCCCCc
Confidence            2357899999999999999999999965543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.24  E-value=1.2e-09  Score=117.13  Aligned_cols=194  Identities=13%  Similarity=0.188  Sum_probs=155.1

Q ss_pred             CCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEe------eC------------CCCcEEEEEEcCCCc
Q 001352          406 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SA------------PCKQISVITCGDDKT  467 (1093)
Q Consensus       406 s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~------s~------------d~~~l~l~s~~~d~~  467 (1093)
                      .|.+.|+|....||.++|||+..++....+.....-++.-++..|      +|            .+....++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            356789999999999999999998754433222223344444444      22            122237888899999


Q ss_pred             EEEEECCCCceeEEee--cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001352          468 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL  545 (1093)
Q Consensus       468 i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  545 (1093)
                      |.+|++..|+....+.  .|.+.|+++.++  .+-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~--~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDA--QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL  159 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecc--cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence            9999999999988885  599999998774  344689999999999999999999999999888899999999999999


Q ss_pred             EEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC-----CCEEEE-EeCCCcEEEEECCC
Q 001352          546 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILA-AGDDHVIKIWDMNK  610 (1093)
Q Consensus       546 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~l~~-~~~dg~i~iwd~~~  610 (1093)
                      ++++.      .|.+||+++++.+..|.||.   ++|.++.|..+     |.++++ ...+..+.+|-...
T Consensus       160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            98853      59999999999999999999   99999999877     677776 44566677886654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.24  E-value=1.1e-09  Score=117.44  Aligned_cols=189  Identities=14%  Similarity=0.221  Sum_probs=148.6

Q ss_pred             cCCCEEEEEe-CCeEEEEEccCceeEEEECCCC---CCeEEEEE------cC-------------CCCCEEEEEeCCCeE
Q 001352          813 KNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAF------NP-------------HDNNVIAIGMDDSTI  869 (1093)
Q Consensus       813 ~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~------s~-------------~d~~~lasg~~dg~i  869 (1093)
                      |-+.++|... ||.+++|+...++....+.+..   +..++..|      +|             .|..+++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4456777775 7999999999998888776422   22333332      22             155688889999999


Q ss_pred             EEEEcCCcceeeecc--cccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEcc
Q 001352          870 LIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK  947 (1093)
Q Consensus       870 ~iwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  947 (1093)
                      .+|++..|+....+.  .|.+.|.++.++.+-..|-|++.|+.+..|+.....     .+........   .+.+++.+|
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~  154 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP  154 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence            999999999988886  499999999999999999999999999999998843     3334333332   588999999


Q ss_pred             CCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccC-----CCEEE-EEeCCCcEEEEEcCCC
Q 001352          948 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-----CRMVF-TSFVDGTLSIHEASNL 1011 (1093)
Q Consensus       948 dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~d-----g~~l~-t~~~dg~v~vwd~~~~ 1011 (1093)
                      ||+.|+++ .++|++||+++++.+.. +.||.++|..+.|-.+     |.+++ ++..+..+.+|-+...
T Consensus       155 D~~~l~~a-s~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  155 DGKILLTA-SRQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             CCCEEEec-cceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            99988874 36899999999999987 7799999999999887     66655 4445566888877663

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.15  E-value=4.2e-08  Score=110.54  Aligned_cols=186  Identities=12%  Similarity=0.046  Sum_probs=111.3

Q ss_pred             EEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001352          458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  537 (1093)
Q Consensus       458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  537 (1093)
                      .++.++.++.|..+|..+|+.+..............    -++..++.++.+|.+..+|..+++................
T Consensus        67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~  142 (377)
T TIGR03300        67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL  142 (377)
T ss_pred             EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence            577888899999999999999877654432222222    2345788889999999999999888776654432111111


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccC--CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 001352          538 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT  615 (1093)
Q Consensus       538 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  615 (1093)
                      .  .+..++.+..    ++.++.||.++|+.+-.+.......  ....+....  +..++.+..+|.+..+|..+|+.+.
T Consensus       143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W  214 (377)
T TIGR03300       143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW  214 (377)
T ss_pred             E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence            2  2344555443    6679999999998876655432000  000111111  2467788889999999999998776


Q ss_pred             EEecCCCCC--CC---ceEEEec--CCCEEEEEECCCeEEEEEcCCC
Q 001352          616 TIDAGGGLP--EN---PRICFNK--NGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       616 ~~~~~~~~~--~v---~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      .........  .+   ..+.-+|  .+..+++++.+|.+..||..++
T Consensus       215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG  261 (377)
T TIGR03300       215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG  261 (377)
T ss_pred             eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence            543221100  00   0000011  2345666666666666666544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.07  E-value=1.7e-07  Score=105.62  Aligned_cols=273  Identities=14%  Similarity=0.084  Sum_probs=169.0

Q ss_pred             EEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCC
Q 001352          351 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS  430 (1093)
Q Consensus       351 lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~  430 (1093)
                      +.+++.+|.|.-+|..+|+.+-...+.                 +  ......+  .++..+++++.++.+..+|..+|+
T Consensus        68 v~v~~~~g~v~a~d~~tG~~~W~~~~~-----------------~--~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~  126 (377)
T TIGR03300        68 VYAADADGTVVALDAETGKRLWRVDLD-----------------E--RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGK  126 (377)
T ss_pred             EEEECCCCeEEEEEccCCcEeeeecCC-----------------C--CcccceE--EcCCEEEEEcCCCEEEEEECCCCc
Confidence            677788899999999999877543221                 1  1011122  257788888899999999999987


Q ss_pred             cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEee-ecccCCccEEEEEecC
Q 001352          431 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC-PHAKENIHFIFSISVD  509 (1093)
Q Consensus       431 ~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~l~s~~~d  509 (1093)
                      .+...   . ..+.+.+.-... +.  .++.++.++.+..||.++|+.+.++......+.... ..|.-.+..++.+..+
T Consensus       127 ~~W~~---~-~~~~~~~~p~v~-~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~  199 (377)
T TIGR03300       127 ELWRA---K-LSSEVLSPPLVA-NG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAG  199 (377)
T ss_pred             Eeeee---c-cCceeecCCEEE-CC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCC
Confidence            65422   1 112222211112 33  466677799999999999998877654332211000 0000011367788889


Q ss_pred             CeEEEEEcCCCCceEEecCCCC----c---eEEEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCC
Q 001352          510 GKIKAWLYDSLGARVDYDAPGL----G---CTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN  580 (1093)
Q Consensus       510 g~i~vwd~~~~~~~~~~~~~~~----~---v~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~  580 (1093)
                      |.+..+|..+++..........    .   ...+.-+|  .+..+++++.    ++.++.+|..+|+.+-.....     
T Consensus       200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~----~g~l~a~d~~tG~~~W~~~~~-----  270 (377)
T TIGR03300       200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY----QGRVAALDLRSGRVLWKRDAS-----  270 (377)
T ss_pred             CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc----CCEEEEEECCCCcEEEeeccC-----
Confidence            9999999988876654332110    0   00010111  2445665554    556999999999876554421     


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeee
Q 001352          581 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA  660 (1093)
Q Consensus       581 ~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~  660 (1093)
                      ......  ..+..+++++.+|.++.+|..+|+.+........ ....+...  .+..+++++.+|.+.+++..+++.+..
T Consensus       271 ~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~-~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~  345 (377)
T TIGR03300       271 SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKY-RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVAR  345 (377)
T ss_pred             CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccC-CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            111122  2467888889999999999999988766532111 11222222  367899999999999999999988776


Q ss_pred             ccccc
Q 001352          661 AGVLS  665 (1093)
Q Consensus       661 ~~~~~  665 (1093)
                      ...+.
T Consensus       346 ~~~~~  350 (377)
T TIGR03300       346 LKTDG  350 (377)
T ss_pred             EEcCC
Confidence            66444

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=99.07  E-value=9.8e-05  Score=84.89  Aligned_cols=622  Identities=11%  Similarity=0.058  Sum_probs=304.1

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC----
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----  408 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d----  408 (1093)
                      |..+-..|+.+-++|  +|.+||.-|.=.+-.+.+-.....          ....+..  + ..-++|..++.-.+    
T Consensus       304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gs----------y~~ilet--~-~NLgPI~Dm~Vvd~d~q~  368 (1096)
T KOG1897|consen  304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGS----------YVVILET--F-VNLGPIVDMCVVDLDRQG  368 (1096)
T ss_pred             CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCc----------hhhhhhh--c-ccccceeeEEEEeccccC
Confidence            455566778888888  588888866655555544322210          0001111  0 12247777765432    


Q ss_pred             CCEEEEEE---cCCEEEEEEccCCCcccceEEeccccccEEEEE--eeCCCCcEEEEEEcCCCcEEEEECCCCceeEEee
Q 001352          409 GSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  483 (1093)
Q Consensus       409 g~~las~~---~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  483 (1093)
                      +..+++|+   .||++++..-.-+-.......+.| -..++.+.  +.+.-.. +++.+-.+ .-++..+...-......
T Consensus       369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee~~~~  445 (1096)
T KOG1897|consen  369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEETEDP  445 (1096)
T ss_pred             CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEEeccc
Confidence            34566664   578899987554422222223445 34566666  4433222 23322222 23344432221111122


Q ss_pred             cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001352          484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  563 (1093)
Q Consensus       484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~  563 (1093)
                      +.......+..+.- +++.|+-.. ...||+++-.  .....+..+. .++....+.+...++.++.    ...+...++
T Consensus       446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~----~~~l~y~~i  516 (1096)
T KOG1897|consen  446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGG----GLALFYLEI  516 (1096)
T ss_pred             cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecC----ccEEEEEEe
Confidence            22222223222211 112222211 2235555322  2222233233 3333444445555555543    333555566


Q ss_pred             CCCeeeeeeecccccCCCeEEEEEcCCC------CEEEEEeCCCcEEEE-ECCCCceEEEEecCC--CCCCCceEEEecC
Q 001352          564 SEGAIKRTYQGLQLQHNSVSVVHFDTAK------DQILAAGDDHVIKIW-DMNKVQLLTTIDAGG--GLPENPRICFNKN  634 (1093)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~------~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~--~~~~v~~v~~s~~  634 (1093)
                      ..+.+....+.  .....|.|+.++|-+      ++++.|..+..+.+. -..+...+.......  -...|.-..+-.|
T Consensus       517 ~~~~l~e~~~~--~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d  594 (1096)
T KOG1897|consen  517 EDGGLREVSHK--EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD  594 (1096)
T ss_pred             eccceeeeeeh--eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence            55553222222  224789999999752      256677766555443 333333333322221  1112334455567


Q ss_pred             CCEEEEEECCCeEEEEEcC--CCceeeec--ccccccceee---------eecCCCceeeeeccCCceEecCCC------
Q 001352          635 GTLLAVIANENRIKILETP--ESNSVDAA--GVLSDNLRKL---------SVNPISTVTGAGIANGSVSVNEDP------  695 (1093)
Q Consensus       635 ~~~l~~~~~dg~i~iw~~~--~~~~~~~~--~~~~~~i~~~---------~~~~~~~~~~~~~~~~~~~~~~~~------  695 (1093)
                      ..+|.++..||.+.-+-+.  ++..-...  .-...++.--         .|........+-...+...|.+-.      
T Consensus       595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~  674 (1096)
T KOG1897|consen  595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNH  674 (1096)
T ss_pred             ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhh
Confidence            8899999999998876554  33221111  1111111111         111112222222233333331111      


Q ss_pred             -----CCC-CccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCccc
Q 001352          696 -----KED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL  769 (1093)
Q Consensus       696 -----s~d-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~  769 (1093)
                           ++. +.-++++ ..+.+++..++.-.....+.+  |   -......+++.+....+.+.+.......=       
T Consensus       675 ~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtv--p---l~~~prrI~~q~~sl~~~v~s~r~e~~~~-------  741 (1096)
T KOG1897|consen  675 MCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTV--P---LGESPRRICYQESSLTFGVLSNRIESSAE-------  741 (1096)
T ss_pred             hcccccccCCceEEEe-cCCceEEEEecchhhcceeee--c---CCCChhheEecccceEEEEEecccccchh-------
Confidence                 111 1223333 235555555443222222221  1   12344556666644444443332211100       


Q ss_pred             CcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccC-CCEEEEEe-----------CCeEEEEEccCceeE
Q 001352          770 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----------GGVISLYIVMTFKTI  837 (1093)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~la~~~-----------dg~i~iwd~~~~~~~  837 (1093)
                       ..+.......++++|..+-+.+...++...+....+.+..|..| +.++++|.           .|.|.++.+..+..+
T Consensus       742 -~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L  820 (1096)
T KOG1897|consen  742 -YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL  820 (1096)
T ss_pred             -hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce
Confidence             00111112345666766655444444432222334444558877 77888774           267999988875444


Q ss_pred             EEECCC--CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q 001352          838 LTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  915 (1093)
Q Consensus       838 ~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd  915 (1093)
                      +....+  .+.+.++..-  +|++||  +-...|++|+..+.+.++.-..|..++..+...-.|..++.|.--+.+.+-.
T Consensus       821 ~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~  896 (1096)
T KOG1897|consen  821 ELVAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQ  896 (1096)
T ss_pred             eeeeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEE
Confidence            444322  2344444332  677776  3456899999999877777778999999999999999999999888887766


Q ss_pred             CCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcc----------eeeeeecC-------C
Q 001352          916 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT----------CLKQWFPI-------S  978 (1093)
Q Consensus       916 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~----------~~~~~~~~-------h  978 (1093)
                      ....+...   ........  +.+++++.+-.+..++.+-.+|.+.+-...+..          ....+..|       |
T Consensus       897 y~~~eg~f---~evArD~~--p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~h  971 (1096)
T KOG1897|consen  897 YKGDEGNF---EEVARDYN--PNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRH  971 (1096)
T ss_pred             EeccCCce---EEeehhhC--ccceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeee
Confidence            65544211   11111111  147889999999988888777776665443210          11111111       3


Q ss_pred             CCCEEEE--EEccCCCEEEEEeCCCcEEEE
Q 001352          979 SVPISQA--TFSCDCRMVFTSFVDGTLSIH 1006 (1093)
Q Consensus       979 ~~~v~~~--~fs~dg~~l~t~~~dg~v~vw 1006 (1093)
                      ..-|..+  .-+|-+..+..|+.+|.|-+-
T Consensus       972 g~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen  972 GSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred             cceEeeccccccCCCCcEEEEEccceEEEE
Confidence            3333331  223444457778889888764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.04  E-value=1.4e-07  Score=117.39  Aligned_cols=260  Identities=11%  Similarity=0.072  Sum_probs=161.9

Q ss_pred             EEEEeecC-CceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCE
Q 001352          739 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY  817 (1093)
Q Consensus       739 ~~l~~s~~-g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~  817 (1093)
                      ..++++++ +..+++-..++.|.+++.........+....      .....|. ...      +.-.....+++++++..
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~------~G~~dG~-~~~------a~f~~P~GIavd~~gn~  637 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE------EGLRDGS-FED------ATFNRPQGLAYNAKKNL  637 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC------cCCCCCc-hhc------cccCCCcEEEEeCCCCE
Confidence            35778764 5566666667888888765332100000000      0000010 000      12234578999999887


Q ss_pred             EEEEe--CCeEEEEEccCceeEEEECCC-----------------CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352          818 LFSAS--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  878 (1093)
Q Consensus       818 la~~~--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~  878 (1093)
                      |.++.  ++.|+++|..++.. .++.+.                 -.....++|+|+++.++++.+.++.|++||..++.
T Consensus       638 LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        638 LYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             EEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence            77665  47799999877643 333210                 11346799999566677777788999999998765


Q ss_pred             eeeecc---------cc------cCCeEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCceeeeee--------eecCC---
Q 001352          879 VISKLE---------GH------SKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRS--------LQTPD---  931 (1093)
Q Consensus       879 ~~~~l~---------~h------~~~V~~l~~s~dg~~-l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~~---  931 (1093)
                      .. .+.         ++      -.....++++|++++ +++-+.++.|++||+.++......-        .....   
T Consensus       717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d  795 (1057)
T PLN02919        717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD  795 (1057)
T ss_pred             EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence            42 111         11      123567999999984 5555667899999998765321000        00000   


Q ss_pred             C--cccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecC------------CCCCEEEEEEccCCCEEEE
Q 001352          932 G--VMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFT  996 (1093)
Q Consensus       932 ~--~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~------------h~~~v~~~~fs~dg~~l~t  996 (1093)
                      +  ..........++++++|+++++ ..+++|++||..++......-.+            +-.....+++++||+++++
T Consensus       796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa  875 (1057)
T PLN02919        796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA  875 (1057)
T ss_pred             CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence            0  0000113568999999997777 57889999999887655322111            1235778999999999999


Q ss_pred             EeCCCcEEEEEcCCCce
Q 001352          997 SFVDGTLSIHEASNLEV 1013 (1093)
Q Consensus       997 ~~~dg~v~vwd~~~~~~ 1013 (1093)
                      -+.+++|++||+.++..
T Consensus       876 Dt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        876 DTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ECCCCEEEEEECCCCcc
Confidence            88999999999999875

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.00  E-value=1.5e-08  Score=111.96  Aligned_cols=506  Identities=12%  Similarity=0.112  Sum_probs=259.0

Q ss_pred             ceeeeecCCCceEEEEEcc----CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352          338 PMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  413 (1093)
Q Consensus       338 V~~~~~spdg~~llasg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la  413 (1093)
                      -+-..|+|... ++|+++.    .|+|.||- ++|++-....+                    .-.+++++|+|..-.||
T Consensus        18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--------------------P~hatSLCWHpe~~vLa   75 (1416)
T KOG3617|consen   18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTY--------------------PVHATSLCWHPEEFVLA   75 (1416)
T ss_pred             ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccccc--------------------ceehhhhccChHHHHHh
Confidence            34457899888 6787764    57888885 56665442111                    12356799999999999


Q ss_pred             EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE--eecC--CCCe
Q 001352          414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--FEGH--GAPV  489 (1093)
Q Consensus       414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~--~~~h--~~~v  489 (1093)
                      +|..-|.+.+|...+.+.-.   ....|..+|.-+.||++|.  .++|+..-|.+.+|....-..++.  +-.|  ...+
T Consensus        76 ~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~l  150 (1416)
T KOG3617|consen   76 QGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQL  150 (1416)
T ss_pred             hccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhcee
Confidence            99999999999988754322   3457999999999999999  899999999999998663222221  1122  2334


Q ss_pred             EEeeecccCCcc------EEEEEecCCeEE-EEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001352          490 YSLCPHAKENIH------FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  562 (1093)
Q Consensus       490 ~~~~~~~~~~~~------~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd  562 (1093)
                      +-++|.-+.++.      ..+..+.+..+- .++++.........        -.-.|+|..++.++.    +|.|+-.|
T Consensus       151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--------ksgv~~g~~F~~~~~----~GtVyyvd  218 (1416)
T KOG3617|consen  151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--------KSGVPKGTEFLFAGK----SGTVYYVD  218 (1416)
T ss_pred             eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--------ccCCCCCcEEEEEcC----CceEEEEc
Confidence            444544333321      223333333332 33333211111110        112367777777765    55676666


Q ss_pred             CCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CC----------------------------Cce
Q 001352          563 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NK----------------------------VQL  613 (1093)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~-~~----------------------------~~~  613 (1093)
                      - .|+.....+...     ...+-|.+...-+++.-.+-++.++-. .+                            |-+
T Consensus       219 q-~g~~~~V~k~dS-----~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvL  292 (1416)
T KOG3617|consen  219 Q-NGRQRTVHKLDS-----EVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVL  292 (1416)
T ss_pred             C-CCcEEEEEEccc-----hHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccc
Confidence            3 344333332211     111122222222222211111111110 00                            000


Q ss_pred             E--EEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCce----------eeecccccccceeeeecCCCceee
Q 001352          614 L--TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS----------VDAAGVLSDNLRKLSVNPISTVTG  681 (1093)
Q Consensus       614 ~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~~~i~~~~~~~~~~~~~  681 (1093)
                      .  ..+.. .....+.+++++..+..++.|...|.+.+|.-.....          +...+.....|..+.|.|..+..+
T Consensus       293 r~~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~a  371 (1416)
T KOG3617|consen  293 RKSEKYGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAA  371 (1416)
T ss_pred             cCCcchhh-hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhh
Confidence            0  00100 1123588999999999999999999999997543311          112223334455555655444333


Q ss_pred             eeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEE
Q 001352          682 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM  761 (1093)
Q Consensus       682 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~v  761 (1093)
                      +.+....+.+...     ..+                             ..|.....++.-+.++-.|..+.       
T Consensus       372 vn~~~~v~ll~E~-----~l~-----------------------------~~h~~~~~A~q~ss~S~~L~hc~-------  410 (1416)
T KOG3617|consen  372 VNTEEDVVLLGEN-----SLT-----------------------------VKHRGKMAAIQTSSNSFTLLHCT-------  410 (1416)
T ss_pred             hhhhhheeeeccC-----chH-----------------------------HHHhhhhHHhhhcCCceEEEeec-------
Confidence            3222221111000     000                             00111111111111111111110       


Q ss_pred             eeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEE--E
Q 001352          762 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL--T  839 (1093)
Q Consensus       762 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~--~  839 (1093)
                                                +|. ...  +   ...-++..++.+.  ..+++....+|..|++.+.....  .
T Consensus       411 --------------------------sGv-~~~--l---~~~~~~~gi~l~e--~~lvvwNgr~v~~y~lq~SG~la~~~  456 (1416)
T KOG3617|consen  411 --------------------------SGV-SQD--L---KLSIPSAGICLGE--KQLVVWNGRTVVTYDLQTSGSLATIQ  456 (1416)
T ss_pred             --------------------------cch-hhh--h---hhccchhhheecc--ceEEEEcCceEEEEEecccchhHHHh
Confidence                                      110 000  0   0122333445433  34666666788889886332111  1


Q ss_pred             ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec--ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 001352          840 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD  917 (1093)
Q Consensus       840 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l--~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~  917 (1093)
                      ........+++++.  +.++...++.+  |.++.+. |...+.+  ..-.+.|..+.++  |.+++.....+.++-+|+.
T Consensus       457 ~~tF~cet~~la~~--nqN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi~--g~~l~v~t~~~~~k~~dvs  529 (1416)
T KOG3617|consen  457 CTTFSCETTSLAIV--NQNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDIM--GELLIVQTVSTVAKRLDVS  529 (1416)
T ss_pred             hhhhccccchHhHh--hcceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhhc--cceeEEeehHHHHHHhhhh
Confidence            11122333445554  33455555544  5555554 4333322  3344556556654  7889988888888888888


Q ss_pred             CCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE---EeC----CeEEEEEcCCccee
Q 001352          918 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL---VHE----THLAIYEAEELTCL  971 (1093)
Q Consensus       918 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~---~~d----~~i~vwd~~~~~~~  971 (1093)
                      ..+...........+-....+.+..+..+..|..+.+   ..+    .++.+||.+++...
T Consensus       530 r~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~  590 (1416)
T KOG3617|consen  530 RAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQ  590 (1416)
T ss_pred             hhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHH
Confidence            7664443333333333333356778888877766554   222    47999999877643

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.00  E-value=1.8e-07  Score=92.21  Aligned_cols=205  Identities=19%  Similarity=0.155  Sum_probs=139.7

Q ss_pred             EEEccCCCEEEEEeCCeEEEEEccCc--eeEEE---ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec
Q 001352          809 FALSKNDAYLFSASGGVISLYIVMTF--KTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  883 (1093)
Q Consensus       809 l~~s~dg~~la~~~dg~i~iwd~~~~--~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l  883 (1093)
                      ++.+.||++||+..|..|.|-..+..  ..+.+   .+.....=+.++||| |+.+||.+...|+|++||+.... +..+
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVI   80 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEc
Confidence            57789999999999999988876542  12222   233445668999999 99999999999999999998543 3333


Q ss_pred             cc-------ccCCeEEEEEeCCC------CEEEEEeCCCcEEEEeCCCCcee---eeeeeecCCCcccCCCCceEEEEcc
Q 001352          884 EG-------HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDVDGWGIQ---TCRSLQTPDGVMTLAPSETHIQFHK  947 (1093)
Q Consensus       884 ~~-------h~~~V~~l~~s~dg------~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~  947 (1093)
                      ..       -...|..+.|.+-.      ..|+....+|.++=|-+..+...   ............   ..|.++.+.|
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~p  157 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYHP  157 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEcC
Confidence            22       23467777776432      24666677888887776432211   111222222222   4799999999


Q ss_pred             CCCEEEEEe-----C-------CeEEEEEcCCcceee--------------------eee--------cCCCCCEEEEEE
Q 001352          948 DQTRFLLVH-----E-------THLAIYEAEELTCLK--------------------QWF--------PISSVPISQATF  987 (1093)
Q Consensus       948 dg~~l~~~~-----d-------~~i~vwd~~~~~~~~--------------------~~~--------~~h~~~v~~~~f  987 (1093)
                      ..++|++++     +       -.+.-|.+-++..--                    .+.        ......|..|..
T Consensus       158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl  237 (282)
T PF15492_consen  158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL  237 (282)
T ss_pred             CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence            999988841     1       136677653321100                    000        112668999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352          988 SCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       988 s~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                      ||||+.||+...+|.|.+|++++.++...+.
T Consensus       238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             CCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            9999999999999999999999999887776

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.00  E-value=2.8e-09  Score=111.76  Aligned_cols=244  Identities=14%  Similarity=0.198  Sum_probs=169.7

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCC-Cccc---ceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  468 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~-~~~~---~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  468 (1093)
                      +.||...|.+++--.+..-+++++.|.+|++|.+... ..+.   ...++..|+.+|.++.|..+.+  ++++  .||.|
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~S--cD~gi  806 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIAS--CDGGI  806 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeee--ccCcc
Confidence            7799999999988778888999999999999998742 2222   4457889999999999999987  5554  47889


Q ss_pred             EEEECCCCceeEEeec--CCCCeEEeeecccCCccEEEEE-ecCCeEEEEEcCCCCceEEe-----cCCCCceEEEEEcc
Q 001352          469 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYSA  540 (1093)
Q Consensus       469 ~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~s~  540 (1093)
                      .+||.--|+.+..+..  ..+.+..+...++-+...++++ +...+|+++|.+..+-...+     .++...+.++++.+
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD  886 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence            9999988887764321  1122222222233344555555 78899999999887655443     33455689999999


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEE-EECCCCceEEEEec
Q 001352          541 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI-WDMNKVQLLTTIDA  619 (1093)
Q Consensus       541 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~  619 (1093)
                      .|+.++++-.    .++|.+.|.++|+.+..+....   .....++ .|..+.++....|.++.+ |..-.|....+...
T Consensus       887 ~GN~lAa~LS----nGci~~LDaR~G~vINswrpme---cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp  958 (1034)
T KOG4190|consen  887 KGNKLAAALS----NGCIAILDARNGKVINSWRPME---CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP  958 (1034)
T ss_pred             CcchhhHHhc----CCcEEEEecCCCceeccCCccc---chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence            9999998865    6789999999999887766544   3333332 355567777888899998 98877766554432


Q ss_pred             CCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352          620 GGGLPENPRICFNKNGTLLAVIANENRIKILET  652 (1093)
Q Consensus       620 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  652 (1093)
                      ...    ..--...-|.-++++...+.+.+|.-
T Consensus       959 ppe----pahflqsvgpSLV~a~~Gn~lgVYad  987 (1034)
T KOG4190|consen  959 PPE----PAHFLQSVGPSLVTAQNGNILGVYAD  987 (1034)
T ss_pred             CCc----chhhhhccCceeEEeccCcEEEEEec
Confidence            211    11111123556667666667777653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.99  E-value=2.4e-07  Score=115.31  Aligned_cols=254  Identities=11%  Similarity=0.073  Sum_probs=158.8

Q ss_pred             eEEEEccCCC-EEEEEe-CCeEEEEEccCceeEEEECC-C-------------CCCeEEEEEcCCCCCEEEEEe-CCCeE
Q 001352          807 PCFALSKNDA-YLFSAS-GGVISLYIVMTFKTILTIMP-P-------------SPTATSLAFNPHDNNVIAIGM-DDSTI  869 (1093)
Q Consensus       807 ~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~~~~~~~-~-------------~~~i~~l~~s~~d~~~lasg~-~dg~i  869 (1093)
                      ..+++++++. ++++-. ++.|+++|.. +..+..+.. .             -.....+++++ ++..|+++. ..+.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence            4678887654 444433 5889999976 444444332 1             12357899998 666555544 45789


Q ss_pred             EEEEcCCcceeeecccc-----------------cCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeeee---ee
Q 001352          870 LIYNARSSEVISKLEGH-----------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ  928 (1093)
Q Consensus       870 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~  928 (1093)
                      +++|+.++.. .++.+-                 -.....++|+| ++.++++.+.++.|++||..++......-   ..
T Consensus       649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            9999887543 333210                 12346799999 56677777888999999998765322100   00


Q ss_pred             cCCCcc---cCCCCceEEEEccCCCEEEE--EeCCeEEEEEcCCcceeeeee-----------cC---------CCCCEE
Q 001352          929 TPDGVM---TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWF-----------PI---------SSVPIS  983 (1093)
Q Consensus       929 ~~~~~~---~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~~~~~~-----------~~---------h~~~v~  983 (1093)
                      ...+..   ........++++|+|+.|.+  ..+++|++||+.++.......           .+         .-....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence            000100   00124677999999986665  466899999998765321100           00         011345


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccc-cCCCC--CCCccceeEEEeCCCCCCEEEEEeCCCcEEEEe
Q 001352          984 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-LRPTT--SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1060 (1093)
Q Consensus       984 ~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~-~~~~~--~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1060 (1093)
                      .++|++||.++++-+.+++|++||..++........... ...+.  ...--.|..++++| +|+.+++-+.+++|++|+
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence            889999999999888999999999998876543321100 00000  00112356788888 578888888999999999


Q ss_pred             cCCC
Q 001352         1061 PNEP 1064 (1093)
Q Consensus      1061 ~~~~ 1064 (1093)
                      +...
T Consensus       887 ~~~~  890 (1057)
T PLN02919        887 LNKG  890 (1057)
T ss_pred             CCCC
Confidence            9654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.98  E-value=4e-08  Score=95.96  Aligned_cols=254  Identities=15%  Similarity=0.100  Sum_probs=156.8

Q ss_pred             Cceeeeec---CCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352          337 SPMSMDFH---PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  413 (1093)
Q Consensus       337 ~V~~~~~s---pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la  413 (1093)
                      .+..+.|.   .+|...++-+-.+|.|.++...-......+           ++++...+  ....-.++.|++.+..++
T Consensus        71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L-----------~~ls~~ki--~~~~~lslD~~~~~~~i~  137 (339)
T KOG0280|consen   71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL-----------RGLSSKKI--SVVEALSLDISTSGTKIF  137 (339)
T ss_pred             ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee-----------cccchhhh--hheeeeEEEeeccCceEE
Confidence            55555554   244435666666788888876443322210           00000000  011244778999999999


Q ss_pred             EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC-CCceeEE-eecCCCCeEE
Q 001352          414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYS-FEGHGAPVYS  491 (1093)
Q Consensus       414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~~~~~-~~~h~~~v~~  491 (1093)
                      ++..+|.+.+-+..... +.....+++|..+.+-+.|+..... ++.+||.|+.+..||++ .++.+.. .+.|...|.+
T Consensus       138 vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~S  215 (339)
T KOG0280|consen  138 VSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVS  215 (339)
T ss_pred             EEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecceEE
Confidence            99999988854443332 3333367899999999999887665 79999999999999998 4455543 5678899999


Q ss_pred             eeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCC--EEEEEecCCCCceeEEEEeCCCC--e
Q 001352          492 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR--RLFSCGTSKEGESFLVEWNESEG--A  567 (1093)
Q Consensus       492 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~~~~~~~i~iwd~~~~--~  567 (1093)
                      +.-++. .+.++++|+.|-.|++||.++......-....+.|..+..+|.-.  .+++|-.++     ..+-+.+.+  +
T Consensus       216 I~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~~~e  289 (339)
T KOG0280|consen  216 IYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDKVLE  289 (339)
T ss_pred             EecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEecccccc
Confidence            876643 668999999999999999997666555455567899999988533  344433211     334443322  2


Q ss_pred             eeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEE-EEECCCC
Q 001352          568 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNKV  611 (1093)
Q Consensus       568 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~-iwd~~~~  611 (1093)
                      ....+..+..|..-...-.|......+++++ .|+.++ +|-.-++
T Consensus       290 ~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  290 FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             hheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            1122222222224444444533334566654 555544 6654443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.98  E-value=2.5e-09  Score=112.19  Aligned_cols=293  Identities=10%  Similarity=0.109  Sum_probs=184.1

Q ss_pred             HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCC-ceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      ++.+.||+..|..++--.+... +++++.|++|++|.+... ..+.        .+.|...     +..|+.+|..+.|-
T Consensus       728 L~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~--------tsaCQfT-----Y~aHkk~i~~igfL  793 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIG--------TSACQFT-----YQAHKKPIHDIGFL  793 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCccc--------cceeeeE-----hhhccCcccceeee
Confidence            3456799999999876655554 789999999999998652 2221        1223222     66799999999999


Q ss_pred             CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC-CCcEEEEEEcCCCcEEEEECCCCceeEEeec-
Q 001352          407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSFEG-  484 (1093)
Q Consensus       407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-  484 (1093)
                      .|-++++++  ||.|++||.--|+.+.+...-..| +.+..+...++ .+.++++.++...+|+++|.+.++....++. 
T Consensus       794 ~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc  870 (1034)
T KOG4190|consen  794 ADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVC  870 (1034)
T ss_pred             eccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEec
Confidence            999999887  677999999887766543222222 23333333343 3443555558899999999999887766643 


Q ss_pred             ----CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352          485 ----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  560 (1093)
Q Consensus       485 ----h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i  560 (1093)
                          ....+++++..+  .|++++++-..|.|.+.|.+++..+..+.........++- |..+.++....    +..+-+
T Consensus       871 na~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sal----dHslaV  943 (1034)
T KOG4190|consen  871 NAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSAL----DHSLAV  943 (1034)
T ss_pred             cCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcc----cceeEe
Confidence                345578888754  5578999999999999999988776655544433333332 44444544332    444666


Q ss_pred             -EeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceEEEEecCCCCCCCceEEEecCC
Q 001352          561 -WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPENPRICFNKNG  635 (1093)
Q Consensus       561 -wd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s~~~  635 (1093)
                       |....|......+...   .+..  ....-|..++++.....+.+|--..    ...+..+....-.+..++++.-|-.
T Consensus       944 nWhaldgimh~q~kppp---epah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN 1018 (1034)
T KOG4190|consen  944 NWHALDGIMHLQDKPPP---EPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLN 1018 (1034)
T ss_pred             eehhcCCeeeeccCCCC---cchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecccc
Confidence             8766665544433322   1111  0112255677766666677774221    1122233332222335677777766


Q ss_pred             CEEEEEECCCeEEE
Q 001352          636 TLLAVIANENRIKI  649 (1093)
Q Consensus       636 ~~l~~~~~dg~i~i  649 (1093)
                      .-+..|...|.|.+
T Consensus      1019 ~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1019 CAFLAGNEHGAIAL 1032 (1034)
T ss_pred             chhhccCCCCceee
Confidence            66677777777765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=7.5e-08  Score=107.73  Aligned_cols=197  Identities=14%  Similarity=0.004  Sum_probs=125.9

Q ss_pred             CceeeeecCCCceEEEEEcc---CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  413 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la  413 (1093)
                      .+....|||||+++++..+.   +..|.++|+.+|+...                    +....+.+....|||||+.|+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~la  248 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKLL  248 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEEE
Confidence            67789999999864554333   3569999999887654                    222445667788999999887


Q ss_pred             EEEc---CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC--cEEEEECCCCceeEEeecCCCC
Q 001352          414 VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAP  488 (1093)
Q Consensus       414 s~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~h~~~  488 (1093)
                      ....   +..|.++|+.+++. +   .+..+........|+|||+.+++.+ ...+  .|.+.|+.+|+..+.... ...
T Consensus       249 ~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy~~dl~~g~~~rlt~~-g~~  322 (419)
T PRK04043        249 LTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIFMKKLNSGSVEQVVFH-GKN  322 (419)
T ss_pred             EEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCceEEEEECCCCCeEeCccC-CCc
Confidence            6532   34688889887752 2   2333443344568999999744433 3333  588889888876443221 111


Q ss_pred             eEEeeecccCCccEEEEEecC---------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352          489 VYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  559 (1093)
Q Consensus       489 v~~~~~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~  559 (1093)
                        ...|  ++||+.|+..+..         ..|.+.|+.++.... +... .......|+|||+.++..... .+...+.
T Consensus       323 --~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~-~~~~~L~  395 (419)
T PRK04043        323 --NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYL-GNQSALG  395 (419)
T ss_pred             --CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEcc-CCcEEEE
Confidence              2255  5577777666543         257777877765433 3222 233358899999999887654 3355678


Q ss_pred             EEeCCCC
Q 001352          560 EWNESEG  566 (1093)
Q Consensus       560 iwd~~~~  566 (1093)
                      +.++...
T Consensus       396 ~~~l~g~  402 (419)
T PRK04043        396 IIRLNYN  402 (419)
T ss_pred             EEecCCC
Confidence            8887554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.96  E-value=4.9e-09  Score=125.06  Aligned_cols=202  Identities=16%  Similarity=0.256  Sum_probs=162.0

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +..|-..|.++.=+|...+.++|+.||.|++|.+..+..+....+. |. ..|+.+.|+.+|+  .+..+..||.+.+|.
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence            3346678899999999999999999999999999998877655443 33 8899999999999  688888899999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEE---ecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEE
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI---SVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC  548 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~---~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~  548 (1093)
                      +. .+.....+.|......+.|..    ..++++   +.++.+.+||.-.... -.....|.+.++++++.|..+.+++|
T Consensus      2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred             cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence            65 666777788988888887754    345555   3568899998654332 23347888999999999999999999


Q ss_pred             ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 001352          549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  620 (1093)
Q Consensus       549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  620 (1093)
                      +.    +|.|++||++..++++.++.            +. ...++++|+..|.++||++.....+..++..
T Consensus      2355 gr----~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2355 GR----KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred             CC----cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence            87    55699999998888776654            33 4578999999999999999988887777643

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.90  E-value=1e-08  Score=122.42  Aligned_cols=224  Identities=13%  Similarity=0.176  Sum_probs=164.3

Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec-CCCCe
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPV  489 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-h~~~v  489 (1093)
                      .......++...-|..+.+..     .+..+-..|.++.=+|...  +.+||+.||.|++|....++.+..++. ....|
T Consensus      2182 ~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~v 2254 (2439)
T KOG1064|consen 2182 RFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRV 2254 (2439)
T ss_pred             cCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcchh
Confidence            333333444445455443321     2334566788888888877  799999999999999999998887753 33677


Q ss_pred             EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee-
Q 001352          490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-  568 (1093)
Q Consensus       490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~-  568 (1093)
                      +.+.|+  ..|..+..+..||.+.+|... .+.......|......+.|-.  ..+++++.+.+ ++.+.+||..-... 
T Consensus      2255 tr~~f~--~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~~~ 2328 (2439)
T KOG1064|consen 2255 TRSRFN--HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPPMN 2328 (2439)
T ss_pred             hhhhhc--ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCccc
Confidence            777774  456688899999999999876 455556677777777777765  66777776655 67799999643211 


Q ss_pred             eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352          569 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  648 (1093)
Q Consensus       569 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  648 (1093)
                      -..-..|.   +.++++++.|..+.+++||.+|.|++||++..++.+.++.           +. ...++++++..|.++
T Consensus      2329 s~v~~~H~---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2329 SLVHTCHD---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred             ceeeeecC---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceE
Confidence            11114454   8899999999999999999999999999998888766643           23 456899999999999


Q ss_pred             EEEcCCCceeeecc
Q 001352          649 ILETPESNSVDAAG  662 (1093)
Q Consensus       649 iw~~~~~~~~~~~~  662 (1093)
                      ||++.....+..+.
T Consensus      2394 Iw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2394 IWRLSEFGLLHTFP 2407 (2439)
T ss_pred             EEEccccchhhcCc
Confidence            99999776665554

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.87  E-value=2.8e-07  Score=90.20  Aligned_cols=268  Identities=13%  Similarity=0.122  Sum_probs=165.2

Q ss_pred             CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC---CCC-EEEEEEcCCEEEEEEccCCCccc
Q 001352          358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP---DGS-LLGVAYSKHIVQLYAYHGGSDAR  433 (1093)
Q Consensus       358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~---dg~-~las~~~d~~i~iwd~~~~~~~~  433 (1093)
                      |.+.++++...+.+.--.+                .......+..+.|+.   +|. .|+-+-..|.|.++.....+...
T Consensus        46 Gkl~Lys~~d~~~~~l~~~----------------q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~  109 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSPLDTL----------------QCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV  109 (339)
T ss_pred             cceEEEeecccccCcccee----------------eeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeee
Confidence            6677888776655431111                112334566677763   555 56667788899999876543222


Q ss_pred             ceEEeccccc---cEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee--EEeecCCCCeEEeeecccCCccEEEEEec
Q 001352          434 QQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISV  508 (1093)
Q Consensus       434 ~~~~~~~h~~---~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~  508 (1093)
                      .+..+..-.-   ...++.|++-+.  -++++..+|.+.+-+...+...  ++++.|..+.+...|+... .+++.+|+.
T Consensus       110 ~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~-pnlvytGgD  186 (339)
T KOG0280|consen  110 HLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE-PNLVYTGGD  186 (339)
T ss_pred             eecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC-CceEEecCC
Confidence            1111211111   245778899888  5888888999986665555443  4789999999999887543 379999999


Q ss_pred             CCeEEEEEcCCCC-ceEE-ecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCC-CeeeeeeecccccCCCeEE
Q 001352          509 DGKIKAWLYDSLG-ARVD-YDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSV  584 (1093)
Q Consensus       509 dg~i~vwd~~~~~-~~~~-~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~  584 (1093)
                      |+.+..||++..+ .+.. ...|...|.++.-+| ++.++++|+.    +..|++||.++ ++++..-..    .+.|..
T Consensus       187 D~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kPl~~~~v----~GGVWR  258 (339)
T KOG0280|consen  187 DGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKPLFKAKV----GGGVWR  258 (339)
T ss_pred             CceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCccccCcc----ccceEE
Confidence            9999999999443 2332 345667888888776 5778899886    66799999984 454433222    367999


Q ss_pred             EEEcCCCC-EEEEEeCCCcEEEEECCCCceE--EEEecCCCCCCCceEEEecC----CCEEEEEE-CCCeEE-EEEcCCC
Q 001352          585 VHFDTAKD-QILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKN----GTLLAVIA-NENRIK-ILETPES  655 (1093)
Q Consensus       585 v~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~----~~~l~~~~-~dg~i~-iw~~~~~  655 (1093)
                      +..+|.-. .++.+..-+..+|-+.+.+...  ..+..+.   .-.++++..|    ...+++++ .|..++ +|-..++
T Consensus       259 i~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~---~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  259 IKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDK---IHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             EEecchhhhHHHHHHHhcCceEEEecccccchheeeeccc---cccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            99998643 2333444444677776654332  1222111   1234444332    34566654 355544 6654433

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=1.4e-06  Score=97.68  Aligned_cols=213  Identities=9%  Similarity=0.017  Sum_probs=132.2

Q ss_pred             eEEEEEccCceeEEEECCCCCCeEEEEEcCCCCC-EEEEEeCC---CeEEEEEcCCcceeeecccccCCeEEEEEeCCCC
Q 001352          825 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN  900 (1093)
Q Consensus       825 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~d---g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~  900 (1093)
                      .|.+-|.. |...+.+.... ......|+| |++ .++..+.+   ..|+++|+.+++...... ..+......|||||+
T Consensus       170 ~l~~~d~d-g~~~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~  245 (419)
T PRK04043        170 NIVLADYT-LTYQKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS  245 (419)
T ss_pred             eEEEECCC-CCceeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence            45555554 33344444333 778899999 776 36654443   479999998886544332 445566788999998


Q ss_pred             EEEEE-eCC--CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCC----eEEEEEcCCcceeee
Q 001352          901 ILVSS-GGD--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ  973 (1093)
Q Consensus       901 ~l~s~-s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~----~i~vwd~~~~~~~~~  973 (1093)
                      .|+.. +.+  ..|.++|+.+++...   +....+      ......|+|||+.|+..++.    .|+++|+.+++..+.
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~~---LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl  316 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLTQ---ITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV  316 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEEE---cccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence            77644 333  468888887765222   222221      12345799999998875432    699999988877554


Q ss_pred             eecCCCCCEEEEEEccCCCEEEEEeCC---------CcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCC
Q 001352          974 WFPISSVPISQATFSCDCRMVFTSFVD---------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1044 (1093)
Q Consensus       974 ~~~~h~~~v~~~~fs~dg~~l~t~~~d---------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1044 (1093)
                      ...+.    ....|||||++|+..+..         ..|.+.|+.++... .+...     .   .   ....+|+| ||
T Consensus       317 t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~---~---~~~p~~SP-DG  379 (419)
T PRK04043        317 VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G---V---NQFPRFSS-DG  379 (419)
T ss_pred             ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C---C---cCCeEECC-CC
Confidence            33322    124899999998877654         26788898888653 33211     1   0   11367999 57


Q ss_pred             CEEEEEeCC-CcEEEEecCCCCCC
Q 001352         1045 TQFAVGLTN-GEVYVIEPNEPGDT 1067 (1093)
Q Consensus      1045 ~~l~~~~~d-g~v~~w~~~~~~~~ 1067 (1093)
                      ..++....+ +.-.++-++..+..
T Consensus       380 ~~I~f~~~~~~~~~L~~~~l~g~~  403 (419)
T PRK04043        380 GSIMFIKYLGNQSALGIIRLNYNK  403 (419)
T ss_pred             CEEEEEEccCCcEEEEEEecCCCe
Confidence            777666654 45456666555543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.84  E-value=2e-06  Score=88.06  Aligned_cols=185  Identities=16%  Similarity=0.191  Sum_probs=128.9

Q ss_pred             EEEEccCCCEEEEEe------CCeEEEEEcc-CceeEEEECCCCCCeEEEEEcCCCCCEEEEEe----------------
Q 001352          808 CFALSKNDAYLFSAS------GGVISLYIVM-TFKTILTIMPPSPTATSLAFNPHDNNVIAIGM----------------  864 (1093)
Q Consensus       808 ~l~~s~dg~~la~~~------dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~----------------  864 (1093)
                      .-+||+||++|.+..      .|.|-|||.. +.+.+..+..+.-.-..+.+.| |++.|+++-                
T Consensus        55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl  133 (305)
T PF07433_consen   55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL  133 (305)
T ss_pred             CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence            468999999999884      3679999999 7788889988887778899999 887777652                


Q ss_pred             --CCCeEEEEEcCCcceeee--c--ccccCCeEEEEEeCCCCEEEEEeCCCc-------EEEEeCCCCceeeeeeeecCC
Q 001352          865 --DDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALNILVSSGGDAQ-------IFVWDVDGWGIQTCRSLQTPD  931 (1093)
Q Consensus       865 --~dg~i~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~dg~~l~s~s~dg~-------i~iwd~~~~~~~~~~~~~~~~  931 (1093)
                        .+-++..-|..+|+++.+  +  .-|...|..+++.++|..++-.-..|.       |-+++-...    ...+..+.
T Consensus       134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~----~~~~~~p~  209 (305)
T PF07433_consen  134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA----LRLLPAPE  209 (305)
T ss_pred             hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc----ceeccCCh
Confidence              123566677888888766  5  338888999999999877765543332       444443331    11122211


Q ss_pred             Cc-ccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCc
Q 001352          932 GV-MTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT 1002 (1093)
Q Consensus       932 ~~-~~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~ 1002 (1093)
                      .. ......+-+++++++|.+++++  ..+.+.+||..++..+....   -..+..++-.+++ +++|.+ .|.
T Consensus       210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG-~G~  278 (305)
T PF07433_consen  210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSG-QGQ  278 (305)
T ss_pred             HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCC-Ccc
Confidence            11 1222478899999999999885  45789999999999887643   2356666666666 666554 344

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.81  E-value=3.6e-08  Score=107.57  Aligned_cols=210  Identities=17%  Similarity=0.283  Sum_probs=144.7

Q ss_pred             eeecCCCCCeEEEEECCC-CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352          391 ALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  469 (1093)
Q Consensus       391 ~~~~~h~~~V~~v~~s~d-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  469 (1093)
                      .++.||+..|+.+.|.|. -..||+++.|..+..||+.+..  +.+.....-......++|+....  .+...+..+.|.
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--~p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~  183 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--RPFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIF  183 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCCC--cceeeeecccccCceeeecccCc--chhhhccCCceE
Confidence            458899999999999995 5688999999999999999865  33333444445677899987666  355566677899


Q ss_pred             EEECCCC-ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCceEEEEEccCCCEEEE
Q 001352          470 VWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFS  547 (1093)
Q Consensus       470 vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~  547 (1093)
                      +||...| .++..+++|...|+.+.|..... ..+.+.+.||+|+.||.+......... ....++..-.+.|-|.-...
T Consensus       184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~  262 (1081)
T KOG0309|consen  184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI  262 (1081)
T ss_pred             EEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence            9999876 56788999999999998754322 368899999999999988655433222 23335555566665543332


Q ss_pred             EecCCCCceeEEE---------EeCCC-CeeeeeeecccccCCCeEEEEEcCC----------CCEEEEEeCCCcEEEEE
Q 001352          548 CGTSKEGESFLVE---------WNESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIWD  607 (1093)
Q Consensus       548 ~~~~~~~~~~i~i---------wd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~----------~~~l~~~~~dg~i~iwd  607 (1093)
                      --..  |...+.+         |+..+ .+.+..|.||.   +.|....|-..          .-+|++-+.|.++++|-
T Consensus       263 mp~~--G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp  337 (1081)
T KOG0309|consen  263 MPMV--GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP  337 (1081)
T ss_pred             cccc--CCeeeeeccccchhhhhccccCCcceeeecCcc---hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence            2111  1223333         34333 35788899988   55554444322          23689999999999998


Q ss_pred             CCC
Q 001352          608 MNK  610 (1093)
Q Consensus       608 ~~~  610 (1093)
                      +.+
T Consensus       338 I~~  340 (1081)
T KOG0309|consen  338 IDS  340 (1081)
T ss_pred             ccH
Confidence            764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.81  E-value=7.3e-06  Score=92.61  Aligned_cols=219  Identities=10%  Similarity=0.059  Sum_probs=126.2

Q ss_pred             CCEEEEEeCCeEEEEEccCceeEEEECCCCCC-----eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccC-
Q 001352          815 DAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-  888 (1093)
Q Consensus       815 g~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~-  888 (1093)
                      +..++...++.+..+|.++|+.+.........     ..+....  ++ .++.++.+|.+..+|..+|+.+........ 
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~  237 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPT  237 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence            33333334577777787777777666532111     0111222  23 466678899999999999987665431100 


Q ss_pred             ------CeEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeE
Q 001352          889 ------RVTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHL  960 (1093)
Q Consensus       889 ------~V~~l~~s~--dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i  960 (1093)
                            ....+.-+|  .+..+..++.+|.+.-+|..+++..-..    ..+.      ...+.. .++...+...++.+
T Consensus       238 ~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~----~~~~------~~~~~~-~~~~vy~~~~~g~l  306 (394)
T PRK11138        238 GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR----EYGS------VNDFAV-DGGRIYLVDQNDRV  306 (394)
T ss_pred             CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee----cCCC------ccCcEE-ECCEEEEEcCCCeE
Confidence                  011111122  2456767778999999999987643211    1111      111221 23444444778999


Q ss_pred             EEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeC
Q 001352          961 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1040 (1093)
Q Consensus       961 ~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1040 (1093)
                      ..+|..+|+.+-...........+...  .+.+|+.++.||.+...|..+|+.+.+.....        ..+.+--+ ..
T Consensus       307 ~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~--------~~~~s~P~-~~  375 (394)
T PRK11138        307 YALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS--------SGFLSEPV-VA  375 (394)
T ss_pred             EEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CcceeCCE-EE
Confidence            999999998654322111111222222  24567778999999999999999988775211        11111001 11


Q ss_pred             CCCCCEEEEEeCCCcEEEEec
Q 001352         1041 PLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus      1041 p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
                         +..|.+++.||.|+.++.
T Consensus       376 ---~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        376 ---DDKLLIQARDGTVYAITR  393 (394)
T ss_pred             ---CCEEEEEeCCceEEEEeC
Confidence               357999999999999876

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.80  E-value=5.7e-07  Score=86.74  Aligned_cols=148  Identities=11%  Similarity=-0.041  Sum_probs=108.3

Q ss_pred             eEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352          400 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  479 (1093)
Q Consensus       400 V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  479 (1093)
                      +.++++|+|++++++.+....|..|.+...............++.=.+.+|+....  .+|++..||++.|||++.-...
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence            88999999999999999999999999876543322223444555667889998887  7999999999999999865443


Q ss_pred             EE-----eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--------ceEEEEEccCCCEEE
Q 001352          480 YS-----FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--------GCTRMAYSANGRRLF  546 (1093)
Q Consensus       480 ~~-----~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--------~v~~~~~s~d~~~l~  546 (1093)
                      ..     -..|.+.++.+.|++.+--.+|+..-.-+.+++.|+++......+.....        .+....|+.++..+.
T Consensus       239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~  318 (344)
T KOG4532|consen  239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND  318 (344)
T ss_pred             hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence            22     24589999999998765556777777778999999998776554333221        255566666665555


Q ss_pred             EEe
Q 001352          547 SCG  549 (1093)
Q Consensus       547 ~~~  549 (1093)
                      +..
T Consensus       319 v~~  321 (344)
T KOG4532|consen  319 VKN  321 (344)
T ss_pred             ccc
Confidence            443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.79  E-value=8e-06  Score=83.69  Aligned_cols=204  Identities=15%  Similarity=0.106  Sum_probs=139.6

Q ss_pred             EEEEcc-CCCEEEEEe-C-CeEEEEEccCceeEEEECCCCCCe--EEEEEcCCCCCEEEEEeC-----CCeEEEEEcC-C
Q 001352          808 CFALSK-NDAYLFSAS-G-GVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMD-----DSTILIYNAR-S  876 (1093)
Q Consensus       808 ~l~~s~-dg~~la~~~-d-g~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~~-----dg~i~iwd~~-~  876 (1093)
                      .++.+| +...++.+- - ....+||..+++....+....+.-  -.-+||+ ||++|++.-.     .|.|-|||.. +
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcCC
Confidence            678888 556666665 3 458899999999998887655433  3578999 8999988543     4799999999 6


Q ss_pred             cceeeecccccCCeEEEEEeCCCCEEEEEe------------------CCCcEEEEeCCCCceeeeeeeecCCCcccCCC
Q 001352          877 SEVISKLEGHSKRVTGLVFSDALNILVSSG------------------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP  938 (1093)
Q Consensus       877 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  938 (1093)
                      .+.+..+..|.-.--.+.+.|||+.|+.+-                  .+-.+..-|..+++......+.. ..+.   .
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~---l  163 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQ---L  163 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-cccc---c
Confidence            677888887776677789999998887752                  12235555666666444222211 1122   2


Q ss_pred             CceEEEEccCCCEEEEE-eCC-------eEEEEEcCCcceeeeeec------CCCCCEEEEEEccCCCEEE-EEeCCCcE
Q 001352          939 SETHIQFHKDQTRFLLV-HET-------HLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVF-TSFVDGTL 1003 (1093)
Q Consensus       939 ~v~~~~~s~dg~~l~~~-~d~-------~i~vwd~~~~~~~~~~~~------~h~~~v~~~~fs~dg~~l~-t~~~dg~v 1003 (1093)
                      ++..+++.++|..++.. ..+       -|.+++...  .+..+..      .-...+-+|+++++|.+++ |+-.-+.+
T Consensus       164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~  241 (305)
T PF07433_consen  164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV  241 (305)
T ss_pred             ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence            69999999999987763 111       244444332  2221111      1157899999999998775 55566889


Q ss_pred             EEEEcCCCceEEEec
Q 001352         1004 SIHEASNLEVQCRIL 1018 (1093)
Q Consensus      1004 ~vwd~~~~~~~~~~~ 1018 (1093)
                      .+||..+++++....
T Consensus       242 ~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  242 AVWDAATGRLLGSVP  256 (305)
T ss_pred             EEEECCCCCEeeccc
Confidence            999999999986655

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.79  E-value=8.7e-07  Score=98.43  Aligned_cols=339  Identities=14%  Similarity=0.108  Sum_probs=187.1

Q ss_pred             eEEEEECCCCCEEEEEE----cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352          400 VNRVVWSPDGSLLGVAY----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  475 (1093)
Q Consensus       400 V~~v~~s~dg~~las~~----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  475 (1093)
                      -+-..|+|...++|+++    ..|.|.||- ++|+..+.. +..-   .+++++|+|..-  +|+.|=.-|.+.+|...+
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~   90 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNT   90 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecCC
Confidence            34467999999998885    357788884 445533321 2222   356799999866  788888899999999877


Q ss_pred             CceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--C--CC--ceEEEEEccCCCEEE---
Q 001352          476 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--P--GL--GCTRMAYSANGRRLF---  546 (1093)
Q Consensus       476 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~--~~--~v~~~~~s~d~~~l~---  546 (1093)
                      .+.......|..+|..+.|+  ++|..++++..-|.|.+|..+-.+.......  |  +.  ...+...++++.-++   
T Consensus        91 ~e~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la  168 (1416)
T KOG3617|consen   91 TETHTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA  168 (1416)
T ss_pred             ceeeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence            77666667899999999995  5678999999999999998875444332221  1  11  223444566643221   


Q ss_pred             EEecCCCCceeEE-EEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCC
Q 001352          547 SCGTSKEGESFLV-EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE  625 (1093)
Q Consensus       547 ~~~~~~~~~~~i~-iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  625 (1093)
                      -+...+|.. -+- .++.+.....+..          . -.-.|+|..++.++.+|+|+-.|- +|++.........   
T Consensus       169 KaaVtgDe~-alD~~fnwk~~~a~rs~----------~-ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~---  232 (1416)
T KOG3617|consen  169 KAAVTGDES-ALDEPFNWKESLAERSD----------E-KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE---  232 (1416)
T ss_pred             hhhccCchh-hhcccccCccchhhccc----------c-ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch---
Confidence            111111111 111 1111110000000          0 012467888999999999988774 5566555554322   


Q ss_pred             CceEEEecCCCEEEEEECCCeEEEEEcC-CCceeeecccccccceeeeecCCCceeeeeccCCceEecCCC-CCCCccce
Q 001352          626 NPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-KEDVKPEI  703 (1093)
Q Consensus       626 v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~~l~  703 (1093)
                       ..+-|.+...-+++...+-++.++-.. ++..        ..+..+..                  .+.. ...|. ++
T Consensus       233 -vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~--------ee~~~vk~------------------sgk~GgrqGg-iA  284 (1416)
T KOG3617|consen  233 -VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTS--------EERCAVKV------------------SGKLGGRQGG-IA  284 (1416)
T ss_pred             -HHHHHhcccceEEEEeeeceeeEEEecCCCch--------HHhhhhhh------------------ccccCCccCc-cc
Confidence             234555544445555444444444332 1111        00000000                  0000 00111 33


Q ss_pred             eecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcc
Q 001352          704 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL  783 (1093)
Q Consensus       704 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~  783 (1093)
                      .+...|.++-        .....     ......+.+++++..+..+.++...|.+.+|.-....+      ....++.+
T Consensus       285 ~sEssGvLr~--------~eKyg-----~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f------~g~p~~d~  345 (1416)
T KOG3617|consen  285 CSESSGVLRK--------SEKYG-----LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGF------QGDPTIDV  345 (1416)
T ss_pred             cccccccccC--------Ccchh-----hhcCCceEEEEEeccceEEEecccCCcEEEeeecCccc------cCCCCcce
Confidence            3322231110        00011     12456799999999999999999999999996433222      11223445


Q ss_pred             cCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEE
Q 001352          784 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS  820 (1093)
Q Consensus       784 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~  820 (1093)
                      |.+.+..          ...+.|+.+.|.|-...+++
T Consensus       346 w~l~~~~----------e~~g~I~~i~Wg~~k~~~av  372 (1416)
T KOG3617|consen  346 WTLNGKR----------ESLGKISLIRWGPIKSTAAV  372 (1416)
T ss_pred             EEecCch----------hhccceEEEEeccccchhhh
Confidence            5544332          24556777777775544444

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.79  E-value=7.1e-08  Score=98.79  Aligned_cols=165  Identities=20%  Similarity=0.157  Sum_probs=115.0

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-  415 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~-  415 (1093)
                      .++.+..+|+++ ++|++..+....++++......    .+.++..            .-...-+++.|-.+......+ 
T Consensus        64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~~------------~v~~~~~ai~~~~~~~sv~v~d  126 (390)
T KOG3914|consen   64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDVS------------CVPKRPTAISFIREDTSVLVAD  126 (390)
T ss_pred             cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeEe------------ecccCcceeeeeeccceEEEEe
Confidence            556677888887 6888888887777776554320    1111110            011223344444455555444 


Q ss_pred             --EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe-ecCCCCeEEe
Q 001352          416 --YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL  492 (1093)
Q Consensus       416 --~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~  492 (1093)
                        +....+.+|....+.+.    .+-||-..+++++|+||++  +++|+..|..|+|-....-..+..+ -||...|..+
T Consensus       127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i  200 (390)
T KOG3914|consen  127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI  200 (390)
T ss_pred             ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence              44455666666654332    3558999999999999998  8999999999999887766666655 5799999999


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001352          493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD  527 (1093)
Q Consensus       493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  527 (1093)
                      +..   ++..|+++|.|+++++||+.+++....+.
T Consensus       201 sl~---~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  201 SLT---DNYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eec---cCceeeecCCCCcEEEEecccCCcccccc
Confidence            874   33579999999999999999988775544

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.77  E-value=7.4e-06  Score=81.04  Aligned_cols=248  Identities=11%  Similarity=0.115  Sum_probs=135.6

Q ss_pred             eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC
Q 001352          339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  418 (1093)
Q Consensus       339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d  418 (1093)
                      |.++.++||+ +||.- .|..|.|=.....-.......              .+.+...-.-..++||||+.+||.+...
T Consensus         1 W~~~~~~~Gk-~lAi~-qd~~iEiRsa~Ddf~si~~kc--------------qVpkD~~PQWRkl~WSpD~tlLa~a~S~   64 (282)
T PF15492_consen    1 WHLALSSDGK-LLAIL-QDQCIEIRSAKDDFSSIIGKC--------------QVPKDPNPQWRKLAWSPDCTLLAYAEST   64 (282)
T ss_pred             CceeecCCCc-EEEEE-eccEEEEEeccCCchheeEEE--------------ecCCCCCchheEEEECCCCcEEEEEcCC
Confidence            4578889998 56653 556677666544321111111              1123344456789999999999999999


Q ss_pred             CEEEEEEccCCCcccc--eEEec-cccccEEEEEeeCCC-----CcEEEEEEcCCCcEEEEECCC-----CceeEEeec-
Q 001352          419 HIVQLYAYHGGSDARQ--QLEID-AHVGNVNDLAFSAPC-----KQISVITCGDDKTIKVWDAVT-----GSRTYSFEG-  484 (1093)
Q Consensus       419 ~~i~iwd~~~~~~~~~--~~~~~-~h~~~v~~~~~s~d~-----~~l~l~s~~~d~~i~vwd~~~-----~~~~~~~~~-  484 (1093)
                      |+|+++|+........  ..... .-...|..+.|.+-.     .. .|+.-..+|.++=|-+..     .+..+++.. 
T Consensus        65 G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~  143 (282)
T PF15492_consen   65 GTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS  143 (282)
T ss_pred             CeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEec
Confidence            9999999987443210  00011 123467777775432     11 345556677777665432     234444432 


Q ss_pred             --CCCCeEEeeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEE---ccCCCEEEEEecCCC--Cce
Q 001352          485 --HGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAY---SANGRRLFSCGTSKE--GES  556 (1093)
Q Consensus       485 --h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~---s~d~~~l~~~~~~~~--~~~  556 (1093)
                        +...|.++.+++..  ++|+.|+. ...-..+           ......+++-..   +|..+.+.. ..+.-  ...
T Consensus       144 ~~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~~-~~~~~~~~~~  209 (282)
T PF15492_consen  144 SHYPHGINSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVTS-SEDDITASSK  209 (282)
T ss_pred             ccCCCceeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEccc-cCcccccccc
Confidence              46789999997654  45555543 2210000           001111111111   111111111 10000  000


Q ss_pred             eEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 001352          557 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  620 (1093)
Q Consensus       557 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  620 (1093)
                      +..+|.+-+.+.   +.........|..|..+|||..|++...+|.|.+|++.+-++......+
T Consensus       210 ~~~~~~~~~~~~---fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  210 RRGLLRIPSFKF---FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             ccceeeccceee---eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            112333222211   1111122468999999999999999999999999999988777666544

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.76  E-value=1.2e-07  Score=92.88  Aligned_cols=258  Identities=13%  Similarity=0.199  Sum_probs=163.3

Q ss_pred             CCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCce-----eEEEECCCCC------------CeEEEEEcCCC-CCEEEE
Q 001352          802 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-----TILTIMPPSP------------TATSLAFNPHD-NNVIAI  862 (1093)
Q Consensus       802 ~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~-----~~~~~~~~~~------------~i~~l~~s~~d-~~~las  862 (1093)
                      ....|+++.|...|.||++|. +|+|.+|.-+...     ....++.|..            .|..+.|..+. ...+..
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            567899999999999999998 5889998765432     2223455542            35666665422 335556


Q ss_pred             EeCCCeEEEEEcCCcce-------------------------------------e-----eec-ccccCCeEEEEEeCCC
Q 001352          863 GMDDSTILIYNARSSEV-------------------------------------I-----SKL-EGHSKRVTGLVFSDAL  899 (1093)
Q Consensus       863 g~~dg~i~iwd~~~~~~-------------------------------------~-----~~l-~~h~~~V~~l~~s~dg  899 (1093)
                      .+.|.+|++|.+.....                                     +     +.. ..|.-.|.++.|..|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            77899999998743200                                     0     001 3577778899999998


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeeeeec-CCCcccCCCCceEEEEccCCCEEEE--EeCCeEEEEEcCCccee-----
Q 001352          900 NILVSSGGDAQIFVWDVDGWGIQTCRSLQT-PDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCL-----  971 (1093)
Q Consensus       900 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~~-----  971 (1093)
                      ..++++ .|-.|.+|+++-....- ..+.. +.........|++..|+|....+..  ++.|.|++-|+......     
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sF-nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k  262 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSF-NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK  262 (460)
T ss_pred             heeeec-cceeeeeccccccCCce-EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence            888875 46669999987532111 11111 1111111135788999998766655  67899999998733211     


Q ss_pred             --ee--------eecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-eEEEeccccc----cCCCCCCCccce-e
Q 001352          972 --KQ--------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE-VQCRILSTAY----LRPTTSCLHVYP-H 1035 (1093)
Q Consensus       972 --~~--------~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~-~~~~~~~~~~----~~~~~~~~~v~~-~ 1035 (1093)
                        ..        ++.+-...|..+.||++|+++++-+. -+|.+||+...+ ++.++..+..    +...+..+.|+. .
T Consensus       263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF  341 (460)
T COG5170         263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF  341 (460)
T ss_pred             hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence              00        11112567889999999999997765 589999997753 3444422211    111123444554 6


Q ss_pred             EEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352         1036 AIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus      1036 ~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
                      .+.|+.+ ...+++|+..+...++-...
T Consensus       342 eisfSgd-~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         342 EISFSGD-DKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             EEEecCC-cccccccccccceeeecccc
Confidence            6788874 56778887777766666433

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.71  E-value=1.6e-07  Score=96.33  Aligned_cols=159  Identities=9%  Similarity=0.079  Sum_probs=113.2

Q ss_pred             EEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce----eeecccccCCeEEEEEeCCCCEE---EEEeCCCcEEEEeCCCCc
Q 001352          848 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNIL---VSSGGDAQIFVWDVDGWG  920 (1093)
Q Consensus       848 ~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~----~~~l~~h~~~V~~l~~s~dg~~l---~s~s~dg~i~iwd~~~~~  920 (1093)
                      ..+..++ ++++||++..+....++++.....    +..... ...-+++.|..+....   ..++....+.+|....+.
T Consensus        66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            3445666 888999888888877777764332    222221 1222334444333333   344556667777766422


Q ss_pred             eeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeC
Q 001352          921 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV  999 (1093)
Q Consensus       921 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~  999 (1093)
                            ....-||..   .++.+++|||+++|+++ .|+.|+|-....--.+..+..||..-|..++.-++ ..|+++|.
T Consensus       144 ------~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG  213 (390)
T KOG3914|consen  144 ------CEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG  213 (390)
T ss_pred             ------cchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC
Confidence                  223345554   69999999999999996 78899999998888888888999999999997654 56999999


Q ss_pred             CCcEEEEEcCCCceEEEec
Q 001352         1000 DGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus      1000 dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                      |++|++||+.+|+.+..+.
T Consensus       214 D~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  214 DKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCcEEEEecccCCcccccc
Confidence            9999999999999987665

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.71  E-value=1.3e-08  Score=112.89  Aligned_cols=215  Identities=16%  Similarity=0.252  Sum_probs=158.3

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC--CCcEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV  470 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~v  470 (1093)
                      +..|...-+|++||-+.+.|++|+..|.|+++++.+|....   ...+|..+|+.+.=+.||..  +++.+.  .--..+
T Consensus      1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~--~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST--QLTSSSSSSPLSAL 1171 (1516)
T ss_pred             hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce--eeeeccccCchHHH
Confidence            67789999999999999999999999999999999997655   67799999999999999994  444332  225789


Q ss_pred             EECC-CCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC----CCceEEEEEccCCCEE
Q 001352          471 WDAV-TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRL  545 (1093)
Q Consensus       471 wd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~v~~~~~s~d~~~l  545 (1093)
                      |++. ++...++|.+.    .++.|+.+  ...-+.|.......+||+++.....++-..    ...-....|+|+..++
T Consensus      1172 W~~~s~~~~~Hsf~ed----~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDED----KAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred             hccccccCcccccccc----ceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence            9976 45666666532    34455433  233445555567889999998876653221    1133678899999888


Q ss_pred             EEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCC
Q 001352          546 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE  625 (1093)
Q Consensus       546 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  625 (1093)
                      +--+         .+||.+..+.++.|....   .. ..-.|+|.|..++.-++     |||+++.+++...+.-.    
T Consensus      1246 lndG---------vLWDvR~~~aIh~FD~ft---~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld---- 1303 (1516)
T KOG1832|consen 1246 LNDG---------VLWDVRIPEAIHRFDQFT---DY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD---- 1303 (1516)
T ss_pred             eeCc---------eeeeeccHHHHhhhhhhe---ec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc----
Confidence            7532         589999988888876654   22 23369999999999764     99999999887776432    


Q ss_pred             CceEEEecCCCEEEE
Q 001352          626 NPRICFNKNGTLLAV  640 (1093)
Q Consensus       626 v~~v~~s~~~~~l~~  640 (1093)
                      -..+.|+..|..++.
T Consensus      1304 qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred             ceEEEeccCccchhh
Confidence            356888888876654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.70  E-value=1.8e-05  Score=89.37  Aligned_cols=153  Identities=19%  Similarity=0.115  Sum_probs=93.1

Q ss_pred             EEEEEcCCCcEEEEECCCCceeEEeecCCC--CeE-----EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001352          458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVY-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG  530 (1093)
Q Consensus       458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  530 (1093)
                      .++.++.++.+.-+|.++|+.+.+......  ...     .+.-.+.-++..++.++.+|.+..+|.++++.........
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~  150 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG  150 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence            467777788999999999998876543220  000     0000011123467788899999999999999888776544


Q ss_pred             CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccC--CCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001352          531 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDM  608 (1093)
Q Consensus       531 ~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~~~dg~i~iwd~  608 (1093)
                      ....+..+ .++ .++++..    ++.++.+|..+|+.+-.+.......  ....+...  .+..++.++.+|.+..+|.
T Consensus       151 ~~~ssP~v-~~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~  222 (394)
T PRK11138        151 EALSRPVV-SDG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM  222 (394)
T ss_pred             ceecCCEE-ECC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence            22111122 134 4444432    5679999999999876665421000  00011111  1345777888999999999


Q ss_pred             CCCceEEEEe
Q 001352          609 NKVQLLTTID  618 (1093)
Q Consensus       609 ~~~~~~~~~~  618 (1093)
                      .+|+.+....
T Consensus       223 ~~G~~~W~~~  232 (394)
T PRK11138        223 EQGQLIWQQR  232 (394)
T ss_pred             cCChhhheec
Confidence            9988766543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.70  E-value=5.1e-06  Score=87.00  Aligned_cols=223  Identities=13%  Similarity=0.123  Sum_probs=138.8

Q ss_pred             CCeEEEEEccCceeEEEECCC--CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCC
Q 001352          823 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN  900 (1093)
Q Consensus       823 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~  900 (1093)
                      +|+|..||..+|+.+......  .....+..+.  ++..+++++.++.++.||..+|+.+.+... .+.+.... ..++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence            578999999999998887542  1222222332  345677778999999999999998877664 22222211 22455


Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeeeecCCC
Q 001352          901 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS  979 (1093)
Q Consensus       901 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~  979 (1093)
                      .++.++.++.|..+|..+++..-.......+...    .........++..++++ .++.|..+|+.+|+.+........
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence            6677778889999999998754431111111100    12223333347777775 589999999999998777544221


Q ss_pred             C---------CEEEEEEccCCCEEEEEeCCCc-EEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEE
Q 001352          980 V---------PISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1049 (1093)
Q Consensus       980 ~---------~v~~~~fs~dg~~l~t~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~ 1049 (1093)
                      .         .+..-....++ .++.++.++. +.+ |+.+++.+.+..     ...     ...   ...+ ++..|++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~~---~~~~-~~~~l~~  217 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IYS---LPSV-DGGTLYV  217 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------ECE---CEEC-CCTEEEE
T ss_pred             CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----ccC---Ccee-eCCEEEE
Confidence            1         11222233355 6777777886 555 999998663221     111     111   1223 3677888


Q ss_pred             EeCCCcEEEEecCCCCCCcc
Q 001352         1050 GLTNGEVYVIEPNEPGDTWA 1069 (1093)
Q Consensus      1050 ~~~dg~v~~w~~~~~~~~~~ 1069 (1093)
                      ++.++.|+.||+...+..|.
T Consensus       218 ~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  218 TSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EETTTEEEEEETTTTEEEEE
T ss_pred             EeCCCEEEEEECCCCCEEeE
Confidence            88999999999998887775

...

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.69  E-value=1.4e-05  Score=82.75  Aligned_cols=205  Identities=16%  Similarity=0.201  Sum_probs=133.2

Q ss_pred             EEEEccCCCEEEEEe---CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC-Ccceeee-
Q 001352          808 CFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVISK-  882 (1093)
Q Consensus       808 ~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~-~~~~~~~-  882 (1093)
                      .+++|.||+++.+..   ...|.|.|+..++.+..+..+. ..  +.+ |...+-+.+-|.||++.-..+. .|+...+ 
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C~--~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-CW--LIY-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-EE--EEE-EEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-EE--EEE-ecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence            457888998888876   3679999999999988876332 11  122 2234567788999999998887 4554322 


Q ss_pred             ---cccccCCe-EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcc---c-CCCCceEEEEccCCCEEEE
Q 001352          883 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM---T-LAPSETHIQFHKDQTRFLL  954 (1093)
Q Consensus       883 ---l~~h~~~V-~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~-~~~~v~~~~~s~dg~~l~~  954 (1093)
                         |..-..++ ..-+++..+..++-.+..|.|+--|+..................   . -.+.-.-+++++....|.+
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence               22222222 34455666666776889999999999887655544444332110   0 0134567899887766665


Q ss_pred             ----EeCC-------eEEEEEcCCcceeeeeecCCCCCEEEEEEccCCC-EEEEE-eCCCcEEEEEcCCCceEEEec
Q 001352          955 ----VHET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTS-FVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       955 ----~~d~-------~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~-~l~t~-~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                          +.++       .|.++|+.+++.+..+...|  ++.++..|.|.+ +|++. ..++.+.+||..+|+.++++.
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence                2222       48889999999999876543  577999999887 55444 457899999999999998887

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.69  E-value=1.9e-07  Score=102.13  Aligned_cols=294  Identities=13%  Similarity=0.153  Sum_probs=187.3

Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCC-cccceEEecccc--ccEEEEEeeCCCCcE-EEEEEcCCCcEEEEE
Q 001352          397 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHV--GNVNDLAFSAPCKQI-SVITCGDDKTIKVWD  472 (1093)
Q Consensus       397 ~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~--~~v~~~~~s~d~~~l-~l~s~~~d~~i~vwd  472 (1093)
                      .+++.++..+|.|+-+|.++.-| +.+-|+...- ..+   -+ .|.  -.|-.+.|++...+. .+|+.+. ..-.+|+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr---~l-~h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwn   97 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPR---WL-HHITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWN   97 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCce---ee-eccCcchhcceecccCCCCceeEEecCc-chhhhhh
Confidence            46788999999999999999888 6666776432 222   11 232  246778898875432 4555554 4456898


Q ss_pred             CCCC---ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccC-CCEEEE
Q 001352          473 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSAN-GRRLFS  547 (1093)
Q Consensus       473 ~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~d-~~~l~~  547 (1093)
                      +...   ..-..+.+|...|+.+-|++.. ...+++++.|-.++.||+++..... ....-......+.|+-. +..+++
T Consensus        98 lA~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas  176 (1081)
T KOG0309|consen   98 LAKSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS  176 (1081)
T ss_pred             hhcCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence            7643   3345677899999999998763 3589999999999999999866544 33444445667888764 444444


Q ss_pred             EecCCCCceeEEEEeCCCC-eeeeeeecccccCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCC
Q 001352          548 CGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE  625 (1093)
Q Consensus       548 ~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  625 (1093)
                      . .    ...|.+||.+.| .++..+++|.   ..+..+.|..- ...+.+.+.||+|+.||.............. ..+
T Consensus       177 s-h----g~~i~vwd~r~gs~pl~s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~p  247 (1081)
T KOG0309|consen  177 S-H----GNDIFVWDLRKGSTPLCSLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFP  247 (1081)
T ss_pred             c-c----CCceEEEeccCCCcceEEecccc---eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-cCc
Confidence            3 3    234999999865 4566777766   77888887653 3467889999999999987543322211111 123


Q ss_pred             CceEEEecCCC--EEEEEECCCeEEE---------EEcCC-CceeeecccccccceeeeecCCCceeeeeccCCceEecC
Q 001352          626 NPRICFNKNGT--LLAVIANENRIKI---------LETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  693 (1093)
Q Consensus       626 v~~v~~s~~~~--~l~~~~~dg~i~i---------w~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1093)
                      +..-.+-|-|.  .+.-.-.+..+.+         |+..+ .+++..+.||.+.|....|-......            +
T Consensus       248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~------------~  315 (1081)
T KOG0309|consen  248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECD------------G  315 (1081)
T ss_pred             ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccccc------------C
Confidence            44445555332  2221111223333         33332 36778888998888766665332211            1


Q ss_pred             CCCCCCccceeecccccceecceee
Q 001352          694 DPKEDVKPEISVEAENKSEVEKPLF  718 (1093)
Q Consensus       694 ~~s~d~~~l~s~~~d~~i~~w~~~~  718 (1093)
                      +.....-.|++-+.|.++|+|.+..
T Consensus       316 d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  316 DYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             CCCccceeEEEeecCCceEeeeccH
Confidence            1112233588999999999998753

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.67  E-value=3.7e-05  Score=80.67  Aligned_cols=221  Identities=14%  Similarity=0.135  Sum_probs=139.1

Q ss_pred             EEEeec-CCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc-cCCCE
Q 001352          740 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAY  817 (1093)
Q Consensus       740 ~l~~s~-~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~  817 (1093)
                      +++|.+ ++.++++-...+.|..|+....                      . .....+      .....+++. +++.+
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----------------------~-~~~~~~------~~~~G~~~~~~~g~l   54 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----------------------E-VEVIDL------PGPNGMAFDRPDGRL   54 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTT----------------------E-EEEEES------SSEEEEEEECTTSEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCC----------------------e-EEEEec------CCCceEEEEccCCEE
Confidence            567777 5665555555677777664332                      2 111111      126677887 66555


Q ss_pred             EEEEeCCeEEEEEccCceeEEEECC-----CCCCeEEEEEcCCCCCEEEEEeCC--------CeEEEEEcCCcceeeecc
Q 001352          818 LFSASGGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGMDD--------STILIYNARSSEVISKLE  884 (1093)
Q Consensus       818 la~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~lasg~~d--------g~i~iwd~~~~~~~~~l~  884 (1093)
                      + ++..+.+.++|..+++.......     .......+++.| +|++.++....        |.|..++.. ++......
T Consensus        55 ~-v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~  131 (246)
T PF08450_consen   55 Y-VADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD  131 (246)
T ss_dssp             E-EEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred             E-EEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence            4 45556666679988865443332     335678999999 88877776544        557777777 55433333


Q ss_pred             cccCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCCc--eeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeE
Q 001352          885 GHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL  960 (1093)
Q Consensus       885 ~h~~~V~~l~~s~dg~~l~-s~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i  960 (1093)
                       .-.....++|+||++.|. +-+..+.|..++++...  ......+.......   +..-.+++..+|++.++. ..+.|
T Consensus       132 -~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~G~l~va~~~~~~I  207 (246)
T PF08450_consen  132 -GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSDGNLWVADWGGGRI  207 (246)
T ss_dssp             -EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTTS-EEEEEETTTEE
T ss_pred             -CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCCCCEEEEEcCCCEE
Confidence             345578999999998775 55677888888886432  22223332222221   136689999999988874 67899


Q ss_pred             EEEEcCCcceeeeeecCCCCCEEEEEEc-cCCCEEEEEe
Q 001352          961 AIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSF  998 (1093)
Q Consensus       961 ~vwd~~~~~~~~~~~~~h~~~v~~~~fs-~dg~~l~t~~  998 (1093)
                      .+++.. |+.+..+..+ ...+++++|. +|.+.|+..+
T Consensus       208 ~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  208 VVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred             EEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence            999988 8888776655 4589999994 6666655443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.65  E-value=5e-05  Score=79.64  Aligned_cols=221  Identities=17%  Similarity=0.140  Sum_probs=143.8

Q ss_pred             eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC-CCCCEEEEEEc
Q 001352          339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-PDGSLLGVAYS  417 (1093)
Q Consensus       339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~dg~~las~~~  417 (1093)
                      .++.|.+....|+++....+.|..|+..+++....                    . . .....+++. +++ .|+.+..
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~-~-~~~~G~~~~~~~g-~l~v~~~   59 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------D-L-PGPNGMAFDRPDG-RLYVADS   59 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------E-S-SSEEEEEEECTTS-EEEEEET
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------e-c-CCCceEEEEccCC-EEEEEEc
Confidence            36789984434788887889999999998865431                    1 1 126667777 665 4455555


Q ss_pred             CCEEEEEEccCCCcccceEEec--c-ccccEEEEEeeCCCCcEEEEEEcCC--------CcEEEEECCCCceeEEeecCC
Q 001352          418 KHIVQLYAYHGGSDARQQLEID--A-HVGNVNDLAFSAPCKQISVITCGDD--------KTIKVWDAVTGSRTYSFEGHG  486 (1093)
Q Consensus       418 d~~i~iwd~~~~~~~~~~~~~~--~-h~~~v~~~~~s~d~~~l~l~s~~~d--------~~i~vwd~~~~~~~~~~~~h~  486 (1093)
                      .+ +.++|..+++. ..+....  . .....+.+++.++|+  +.++....        |.|..++.. ++...... .-
T Consensus        60 ~~-~~~~d~~~g~~-~~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~  133 (246)
T PF08450_consen   60 GG-IAVVDPDTGKV-TVLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL  133 (246)
T ss_dssp             TC-EEEEETTTTEE-EEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred             Cc-eEEEecCCCcE-EEEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence            55 56669988753 3333332  2 446789999999999  56665433        457777766 55443333 34


Q ss_pred             CCeEEeeecccCCccEE-EEEecCCeEEEEEcCCCCc----eEEe-cCCC--CceEEEEEccCCCEEEEEecCCCCceeE
Q 001352          487 APVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGA----RVDY-DAPG--LGCTRMAYSANGRRLFSCGTSKEGESFL  558 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~----~~~~-~~~~--~~v~~~~~s~d~~~l~~~~~~~~~~~~i  558 (1093)
                      ...+.++|++  +++.| ++-+..+.|..++++....    ...+ ....  +....+++..+|+..++...    .+.|
T Consensus       134 ~~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I  207 (246)
T PF08450_consen  134 GFPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRI  207 (246)
T ss_dssp             SSEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEE
T ss_pred             ccccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEE
Confidence            5578888865  55555 5677888999999875443    1112 2222  34788999999988777553    5569


Q ss_pred             EEEeCCCCeeeeeeecccccCCCeEEEEE-cCCCCEEEEEe
Q 001352          559 VEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAG  598 (1093)
Q Consensus       559 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~-~~~~~~l~~~~  598 (1093)
                      .+++.. |+.+..+....   ..+++++| .++.+.|++.+
T Consensus       208 ~~~~p~-G~~~~~i~~p~---~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  208 VVFDPD-GKLLREIELPV---PRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEETT-SCEEEEEE-SS---SSEEEEEEESTTSSEEEEEE
T ss_pred             EEECCC-ccEEEEEcCCC---CCEEEEEEECCCCCEEEEEe
Confidence            999987 88888887664   57899999 46767776654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.64  E-value=0.0025  Score=73.80  Aligned_cols=619  Identities=12%  Similarity=0.113  Sum_probs=311.0

Q ss_pred             eeecCCCceEEEEEccCCcEEEEecC-CCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCC
Q 001352          341 MDFHPVQHTLLLVGTNVGDTGLWDVN-SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH  419 (1093)
Q Consensus       341 ~~~spdg~~llasg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~  419 (1093)
                      -..+++|.+ ...|..+|.+...-+. +++......+++            . +-|...-..|+.+-++| .|.+||.-|
T Consensus       263 ~~v~~~~~~-yLl~d~~G~Lf~l~l~~~~e~~s~~~lkv------------e-~lge~siassi~~L~ng-~lFvGS~~g  327 (1096)
T KOG1897|consen  263 GRVDLQGSR-YLLGDEDGMLFKLLLSHTGETVSGLDLKV------------E-YLGETSIASSINYLDNG-VLFVGSRFG  327 (1096)
T ss_pred             ccccCCccE-EEEecCCCcEEEEEeecccccccceEEEE------------E-ecCCcchhhhhhcccCc-eEEEeccCC
Confidence            456778875 5667888887766665 555443211111            0 23444555666666665 667777666


Q ss_pred             EEEEEEccCCCcc----cceEEeccccccEEEEEeeCCC---CcEEEEEEc---CCCcEEEEECCCCc-e--eEEeecCC
Q 001352          420 IVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPC---KQISVITCG---DDKTIKVWDAVTGS-R--TYSFEGHG  486 (1093)
Q Consensus       420 ~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~---~~l~l~s~~---~d~~i~vwd~~~~~-~--~~~~~~h~  486 (1093)
                      .=++-.+.+....    ....++ ..-+||.+++.-...   +. -++|++   .||++++....-|- .  .-.+.| -
T Consensus       328 dSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~-qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-i  404 (1096)
T KOG1897|consen  328 DSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQG-QIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-I  404 (1096)
T ss_pred             ceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCc-eEEEEeCCCCCCcEEEEecccccceeeEeecCC-c
Confidence            5455555443221    101111 234578887765432   22 355543   68899998643331 1  122333 3


Q ss_pred             CCeEEee--ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeC
Q 001352          487 APVYSLC--PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNE  563 (1093)
Q Consensus       487 ~~v~~~~--~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~  563 (1093)
                      ..++++.  +.+..|. +|+.+-.+-+ ++..+...-......+-......+..|. .|+.|+-..     ...|++++-
T Consensus       405 kg~w~lk~~v~~~~d~-ylvlsf~~eT-rvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-----s~~iRl~ss  477 (1096)
T KOG1897|consen  405 KGMWSLKSMVDENYDN-YLVLSFISET-RVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-----SNSIRLVSS  477 (1096)
T ss_pred             cceeEeeccccccCCc-EEEEEeccce-EEEEEccceEEeccccccccCceEEEEccCCceEEEEe-----cccEEEEcc
Confidence            4456665  5555554 5554443333 3333332211111111111222222222 333333322     223777764


Q ss_pred             CCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC--C----CE
Q 001352          564 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--G----TL  637 (1093)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~  637 (1093)
                      .  .....+...    +.++....+.+...++.++.++.+...++..+.+ .....+.-...|.|+.++|-  +    ++
T Consensus       478 ~--~~~~~W~~p----~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l-~e~~~~~~e~evaCLDisp~~d~~~~s~~  550 (1096)
T KOG1897|consen  478 A--GLRSEWRPP----GKITIGVVSANASQVVVAGGGLALFYLEIEDGGL-REVSHKEFEYEVACLDISPLGDAPNKSRL  550 (1096)
T ss_pred             h--hhhhcccCC----CceEEEEEeecceEEEEecCccEEEEEEeeccce-eeeeeheecceeEEEecccCCCCCCcceE
Confidence            4  122233222    2334444444556788888778887777776663 22222222345888988873  2    37


Q ss_pred             EEEEECCCeEEEEEcCCC-ceeeeccc----ccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccce
Q 001352          638 LAVIANENRIKILETPES-NSVDAAGV----LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  712 (1093)
Q Consensus       638 l~~~~~dg~i~iw~~~~~-~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  712 (1093)
                      +++|..+..+.+.-.... ..+.....    .+..|.-..+                      -.|..+|.++..||.+.
T Consensus       551 ~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~----------------------e~d~~yLlvalgdG~l~  608 (1096)
T KOG1897|consen  551 LAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTF----------------------EGDIHYLLVALGDGALL  608 (1096)
T ss_pred             EEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEe----------------------eccceEEEEEcCCceEE
Confidence            888877766655443322 22211111    1111111111                      23578889999999887


Q ss_pred             ecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCce
Q 001352          713 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF  792 (1093)
Q Consensus       713 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (1093)
                      -|-++.........-..  .-...++.--.|+..++.-+.+.+|.-..+|.....              -++        
T Consensus       609 ~fv~d~~tg~lsd~Kk~--~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k--------------Lv~--------  664 (1096)
T KOG1897|consen  609 YFVLDINTGQLSDRKKV--TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK--------------LVY--------  664 (1096)
T ss_pred             EEEEEcccceEcccccc--ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc--------------EEE--------
Confidence            77655332221111000  012334444456655555555555544444432111              001        


Q ss_pred             eeccCCCCCCCCCeeEE-EEccC--CCEEEEEeCCeEEEEEccCcee--EEEECCCCCCeEEEEEcCCCCCEEEEEeCC-
Q 001352          793 MVNDTTDSNSQEAVPCF-ALSKN--DAYLFSASGGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD-  866 (1093)
Q Consensus       793 ~~~~~~~~~~~~~v~~l-~~s~d--g~~la~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~d-  866 (1093)
                      ....++      .+..+ .|+.+  ...++++..+.+++.-+..-..  ++++. -......+++.+ ....+++.+.. 
T Consensus       665 spls~k------ev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~  736 (1096)
T KOG1897|consen  665 SPLSLK------EVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRI  736 (1096)
T ss_pred             eccchH------HhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEeccc
Confidence            110011      11111 12222  3456777777777776654322  23322 223445566665 34444443321 


Q ss_pred             -------------CeEEEEEcCCcceeeecc--cc--cCCeEEEEEeCC-CCEEEEEeC----------CCcEEEEeCCC
Q 001352          867 -------------STILIYNARSSEVISKLE--GH--SKRVTGLVFSDA-LNILVSSGG----------DAQIFVWDVDG  918 (1093)
Q Consensus       867 -------------g~i~iwd~~~~~~~~~l~--~h--~~~V~~l~~s~d-g~~l~s~s~----------dg~i~iwd~~~  918 (1093)
                                   ..++++|-.|-+.+...+  ..  .-.|.++.|..| +.+++.|..          .|.|.|+.+..
T Consensus       737 e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e  816 (1096)
T KOG1897|consen  737 ESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE  816 (1096)
T ss_pred             ccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence                         156777776665543322  11  123555668877 677777642          46677777766


Q ss_pred             -CceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEE
Q 001352          919 -WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS  997 (1093)
Q Consensus       919 -~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~  997 (1093)
                       ++...   +....  ..  +.+.++. --+|+ ++++-...|++|++.+.+.++. ...|..++..+...-.|..+++|
T Consensus       817 ~~~L~~---v~e~~--v~--Gav~aL~-~fngk-llA~In~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~Vg  886 (1096)
T KOG1897|consen  817 LNSLEL---VAETV--VK--GAVYALV-EFNGK-LLAGINQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVG  886 (1096)
T ss_pred             CCceee---eeeee--ec--cceeehh-hhCCe-EEEecCcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEe
Confidence             22111   11110  00  1122221 12344 5556667899999998866665 55678899999999999999999


Q ss_pred             eCCCcEEEEEcCCCc--eEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001352          998 FVDGTLSIHEASNLE--VQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1066 (1093)
Q Consensus       998 ~~dg~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~ 1066 (1093)
                      ..-+++.+-.....+  ..-.-  ..+.|.       |..++.+-  |...++.+..+|.+++-.....+.
T Consensus       887 Dlm~Sitll~y~~~eg~f~evA--rD~~p~-------Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~~  946 (1096)
T KOG1897|consen  887 DLMRSITLLQYKGDEGNFEEVA--RDYNPN-------WMTAVEIL--DDDTYLGAENSGNLFTVRKDSDAT  946 (1096)
T ss_pred             eccceEEEEEEeccCCceEEee--hhhCcc-------ceeeEEEe--cCceEEeecccccEEEEEecCCCC
Confidence            888887775554443  43221  122222       22233333  356788888999999888764443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.61  E-value=7.5e-07  Score=85.62  Aligned_cols=209  Identities=14%  Similarity=0.202  Sum_probs=129.8

Q ss_pred             ceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc
Q 001352          338 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  417 (1093)
Q Consensus       338 V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~  417 (1093)
                      |+.+.|+-+-  .|+++..++.+......++.+..     .|+-.....+++.  +..|.++-.+-+.+--+..+++++.
T Consensus        39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~~~--~a~~sep~p~~~~s~~~t~V~~~~~  109 (319)
T KOG4714|consen   39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPFKV--LAKNSEIDPNDACTMTDNRVCIGYA  109 (319)
T ss_pred             EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCceee--eeccCCCCCcccccccCCceEecCC
Confidence            6666677664  58888888888888776665543     2332233333333  2345555555555666889999999


Q ss_pred             CCEEEEEEccCCCcccceEEec-cccccEEEEEeeCCCCcEEEEEEc-----CCCcEEEEECCCCceeEEeecCCCCeEE
Q 001352          418 KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS  491 (1093)
Q Consensus       418 d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~-----~d~~i~vwd~~~~~~~~~~~~h~~~v~~  491 (1093)
                      ||.+.+++.+.-  ++....+. .|.+ -.+.+....+.  .+.+++     .-+..+.|+++..+.+..-......|.+
T Consensus       110 dg~~~v~s~~~~--~~~~~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~  184 (319)
T KOG4714|consen  110 DGSLAVFSTDKD--LALMSRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA  184 (319)
T ss_pred             CceEEEEechHH--Hhhhhhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence            999999998762  22111111 1222 12233333444  333332     1223455555433322211112234888


Q ss_pred             eeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCC
Q 001352          492 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE  565 (1093)
Q Consensus       492 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~  565 (1093)
                      ++-+|... +.+++|+.||.+-+||++...... .+..|..++..+.|+| ++..|++++.    +|.+..||..+
T Consensus       185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~  255 (319)
T KOG4714|consen  185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST  255 (319)
T ss_pred             hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence            88877654 688999999999999999875443 4567888999999999 5678888876    55699999654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=1.3e-06  Score=90.55  Aligned_cols=299  Identities=13%  Similarity=0.136  Sum_probs=191.4

Q ss_pred             cccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc
Q 001352          734 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  813 (1093)
Q Consensus       734 ~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  813 (1093)
                      |...|+.+..+ ..+++++++-||.++.|.-..                    ..|..+..   ..+.|...+.+++.+-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~--------------------isGvEfVK---hFraHL~~I~sl~~S~   63 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR--------------------ISGVEFVK---HFRAHLGVILSLAVSY   63 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCC--------------------ccceeehh---hhHHHHHHHHhhhccc
Confidence            66666665544 566799999999999985211                    01111111   1123777888999999


Q ss_pred             CCCEEEEEe--CCeEEEEEccCceeEEEECCCC-CCeEEEEEcCCCC-CEEEE-EeCCCeEEEEEcCCcc-eeeec-ccc
Q 001352          814 NDAYLFSAS--GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDN-NVIAI-GMDDSTILIYNARSSE-VISKL-EGH  886 (1093)
Q Consensus       814 dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~-~~las-g~~dg~i~iwd~~~~~-~~~~l-~~h  886 (1093)
                      ||.++++.+  |..++++|+++-..+..++... ....+...++.|. ..||+ .-.+|.+.++|-.... ...-+ .-|
T Consensus        64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH  143 (558)
T KOG0882|consen   64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH  143 (558)
T ss_pred             cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence            999999976  5789999998776654433221 1222333444121 13333 3457899999976543 23333 349


Q ss_pred             cCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-eeeeeeee------cCCCcccCCCCceEEEEccCCCEEEE-EeCC
Q 001352          887 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG-IQTCRSLQ------TPDGVMTLAPSETHIQFHKDQTRFLL-VHET  958 (1093)
Q Consensus       887 ~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~------~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~  958 (1093)
                      ..+|.++.+++-+..++|....|.|.-|.....- .......-      .+-+.........++.|+|+|..+++ +.|.
T Consensus       144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr  223 (558)
T KOG0882|consen  144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR  223 (558)
T ss_pred             cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc
Confidence            9999999999999999999999999999987410 00000000      00011111135789999999999999 7888


Q ss_pred             eEEEEEcCCcceeeeeecC-------------------------------C-CCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001352          959 HLAIYEAEELTCLKQWFPI-------------------------------S-SVPISQATFSCDCRMVFTSFVDGTLSIH 1006 (1093)
Q Consensus       959 ~i~vwd~~~~~~~~~~~~~-------------------------------h-~~~v~~~~fs~dg~~l~t~~~dg~v~vw 1006 (1093)
                      .|++++..+|+.++.+-..                               | ...-+.++|...|.+|+-++-=| |+|.
T Consensus       224 kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvi  302 (558)
T KOG0882|consen  224 KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVI  302 (558)
T ss_pred             EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEE
Confidence            9999999988766542110                               2 33456678888999999887765 8999


Q ss_pred             EcCCCceEEEecccccc---------CCCC-CC------CccceeEEEeCCCCCCEEEEEeCCCcEEEE
Q 001352         1007 EASNLEVQCRILSTAYL---------RPTT-SC------LHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1059 (1093)
Q Consensus      1007 d~~~~~~~~~~~~~~~~---------~~~~-~~------~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w 1059 (1093)
                      ++.++...+.+......         .... +.      ....++ +-+.+ |+..++++-.-..+++|
T Consensus       303 n~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~-~~~~~-dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  303 NLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL-LEFQK-DPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             EeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc-cccCC-CCeEEEeeeecceEEEE
Confidence            99999887655411110         0000 00      001111 22455 57888899888999998

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.60  E-value=8e-07  Score=87.33  Aligned_cols=118  Identities=21%  Similarity=0.299  Sum_probs=86.1

Q ss_pred             CCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCce---eEEEECCCCC-----CeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001352          801 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---TILTIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIY  872 (1093)
Q Consensus       801 ~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~---~~~~~~~~~~-----~i~~l~~s~~d~~~lasg~~dg~i~iw  872 (1093)
                      .|...+.++.|..|.+.++++.+=.|-+|+++--.   .+..+++|..     -|++..|+|.....+...+..|.|++-
T Consensus       170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~  249 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN  249 (460)
T ss_pred             cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence            47888999999999999999999999999886322   2334555553     578899999777788888899999999


Q ss_pred             EcCCcce----------------eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 001352          873 NARSSEV----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW  919 (1093)
Q Consensus       873 d~~~~~~----------------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~  919 (1093)
                      |++...+                +.-+.+-...|..+.|+++|+++++-+. -+|+|||+...
T Consensus       250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~  311 (460)
T COG5170         250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA  311 (460)
T ss_pred             hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence            9974321                0111222345777888888888887544 45888888763

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.59  E-value=7.1e-05  Score=87.98  Aligned_cols=243  Identities=14%  Similarity=0.165  Sum_probs=144.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceee
Q 001352          580 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD  659 (1093)
Q Consensus       580 ~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  659 (1093)
                      ..|.++.|..+.+.++.+...|.|.+-|.++......-...   ..|.+++|+||+..++..+..+++.+-+.. -.++.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~  144 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTKD-FEPIA  144 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchh
Confidence            57999999999999999999999999988876654433333   348999999999999999998887764432 11110


Q ss_pred             ecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceE
Q 001352          660 AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS  739 (1093)
Q Consensus       660 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~  739 (1093)
                      ...-+.      .-.+.+....+|++...-.|.|.                                          ...
T Consensus       145 E~~L~~------d~~~~sk~v~VGwGrkeTqfrgs------------------------------------------~gr  176 (1265)
T KOG1920|consen  145 EKPLDA------DDERKSKFVNVGWGRKETQFRGS------------------------------------------EGR  176 (1265)
T ss_pred             cccccc------ccccccccceecccccceeeecc------------------------------------------hhh
Confidence            000000      00001111111111111111000                                          000


Q ss_pred             EEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEE
Q 001352          740 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF  819 (1093)
Q Consensus       740 ~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la  819 (1093)
                      ..+.-+                                         ......    +.+....+.-+.+.|--||+++|
T Consensus       177 ~~~~~~-----------------------------------------~~~ek~----~~~~~~~~~~~~IsWRgDg~~fA  211 (1265)
T KOG1920|consen  177 QAARQK-----------------------------------------IEKEKA----LEQIEQDDHKTSISWRGDGEYFA  211 (1265)
T ss_pred             hccccc-----------------------------------------cccccc----ccchhhccCCceEEEccCCcEEE
Confidence            000000                                         000000    00000122334688999999999


Q ss_pred             EEe-----C-CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEe---CCCeEEEEEcCC---cceeeeccccc
Q 001352          820 SAS-----G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DDSTILIYNARS---SEVISKLEGHS  887 (1093)
Q Consensus       820 ~~~-----d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---~dg~i~iwd~~~---~~~~~~l~~h~  887 (1093)
                      +..     + ..|+|||-+ |..-..-....+.-.+++|-| .|.++|+-.   .|+.|.+|.-..   |+....++...
T Consensus       212 Vs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de  289 (1265)
T KOG1920|consen  212 VSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE  289 (1265)
T ss_pred             EEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence            853     4 679999987 554444333445567899999 888888743   455799998543   23333344445


Q ss_pred             CCeEEEEEeCCCCEEEE---EeCCCcEEEEeCCCCce
Q 001352          888 KRVTGLVFSDALNILVS---SGGDAQIFVWDVDGWGI  921 (1093)
Q Consensus       888 ~~V~~l~~s~dg~~l~s---~s~dg~i~iwd~~~~~~  921 (1093)
                      .+|..++|+.++..||+   ......|++|-+.+..-
T Consensus       290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW  326 (1265)
T KOG1920|consen  290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW  326 (1265)
T ss_pred             cchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence            55999999999999998   55555699999988553

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.58  E-value=0.00059  Score=66.30  Aligned_cols=137  Identities=12%  Similarity=-0.043  Sum_probs=90.2

Q ss_pred             cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCC
Q 001352          501 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN  580 (1093)
Q Consensus       501 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~  580 (1093)
                      .+++.|+..+.+..-|..++......... .++.+-+.- -|++++.+..    .+.+++.+.++|.....+....   .
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~---~   94 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILE---T   94 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehh---h
Confidence            57778888888888888777766544332 233332222 4667777776    4459999999998887776544   2


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352          581 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  648 (1093)
Q Consensus       581 ~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  648 (1093)
                      --......+++..+.+|+.|++.+..|..+..++......+..  ..+-+..|-...|..+...|.+.
T Consensus        95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~vl  160 (354)
T KOG4649|consen   95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAVL  160 (354)
T ss_pred             hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceEE
Confidence            2223456778999999999999999999999998887665543  23344555223344444444443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.57  E-value=3.8e-05  Score=79.72  Aligned_cols=285  Identities=12%  Similarity=0.138  Sum_probs=154.6

Q ss_pred             eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceEEEEecCCC---
Q 001352          556 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG---  622 (1093)
Q Consensus       556 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~---  622 (1093)
                      ++++++|..+++.+..+..     +-...+..+|+++.+++++          ..-.|.+||..+-.....+.....   
T Consensus        17 ~rv~viD~d~~k~lGmi~~-----g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~   91 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT-----GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA   91 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE-----ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred             ceEEEEECCCCcEEEEeec-----ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence            4599999999998877765     3355577899999988754          334689999999988887665432   


Q ss_pred             --CCCCceEEEecCCCEEEEEEC--CCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCC
Q 001352          623 --LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED  698 (1093)
Q Consensus       623 --~~~v~~v~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  698 (1093)
                        .......+++.||+++++...  ..+|.|.|+...+.+..+..+.    |..+-|.+                     
T Consensus        92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~---------------------  146 (342)
T PF06433_consen   92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSG---------------------  146 (342)
T ss_dssp             -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEE---------------------
T ss_pred             eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecC---------------------
Confidence              123456788889988877543  4678888888776665443211    11111100                     


Q ss_pred             CccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccc
Q 001352          699 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK  778 (1093)
Q Consensus       699 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~  778 (1093)
                      ...+.+-+.||.+....++............-......-+..-+++..+..++..+-+|.++--++........      
T Consensus       147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~------  220 (342)
T PF06433_consen  147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG------  220 (342)
T ss_dssp             TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE------
T ss_pred             CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc------
Confidence            01133334444444433331111110000000001111222334455555566677777777776655432111      


Q ss_pred             cCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE-e---CC-------eEEEEEccCceeEEEECCCCCCe
Q 001352          779 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S---GG-------VISLYIVMTFKTILTIMPPSPTA  847 (1093)
Q Consensus       779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~---dg-------~i~iwd~~~~~~~~~~~~~~~~i  847 (1093)
                         .-|...+...... ..    ..+.-.-+++++....|.+. .   ++       .|.++|+.+++.+.++.. ..++
T Consensus       221 ---~~~~~~t~~e~~~-~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~  291 (342)
T PF06433_consen  221 ---KPWSLLTDAEKAD-GW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPI  291 (342)
T ss_dssp             ---EEEESS-HHHHHT-TE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEE
T ss_pred             ---CcccccCcccccc-Cc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCcc
Confidence               1111111000000 00    01122346666655444433 1   11       388889999999999873 3467


Q ss_pred             EEEEEcCCCCCEEEEEe-CCCeEEEEEcCCcceeeeccc
Q 001352          848 TSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG  885 (1093)
Q Consensus       848 ~~l~~s~~d~~~lasg~-~dg~i~iwd~~~~~~~~~l~~  885 (1093)
                      .+++++.++..+|++.+ .++.+.+||..+|+.++++++
T Consensus       292 ~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  292 DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            89999996555776554 578999999999999988874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.56  E-value=1e-05  Score=78.29  Aligned_cols=201  Identities=14%  Similarity=0.113  Sum_probs=134.3

Q ss_pred             CCCEEEEEe-CCeEEEEEccCceeEE-EECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccC--C
Q 001352          814 NDAYLFSAS-GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK--R  889 (1093)
Q Consensus       814 dg~~la~~~-dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~--~  889 (1093)
                      ..-+||.|+ .|...+|...+.+... ....+...|+-+.=-.+...-+..++.|.++++.++..+.....+  |..  .
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--h~~~~~  160 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--HNQNLT  160 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee--eccccc
Confidence            345677775 5999999998655433 333344433322111112234556788888888887754432222  333  3


Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCc
Q 001352          890 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL  968 (1093)
Q Consensus       890 V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~  968 (1093)
                      +.++++|+|++++++.+....|..|.++............+..     ..-.+..||.....+|+ ..||++.|||+...
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-----D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-----DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-----CCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence            7889999999999999999999999998754333221111111     23467899999999998 58999999999865


Q ss_pred             cee----eeeecCCCCCEEEEEEccCCC--EEEEEeCCCcEEEEEcCCCceEEEecccc
Q 001352          969 TCL----KQWFPISSVPISQATFSCDCR--MVFTSFVDGTLSIHEASNLEVQCRILSTA 1021 (1093)
Q Consensus       969 ~~~----~~~~~~h~~~v~~~~fs~dg~--~l~t~~~dg~v~vwd~~~~~~~~~~~~~~ 1021 (1093)
                      ...    ....+.|.+.+..+.||+-|.  +|+..-.-+.+.|-|++++.-...+....
T Consensus       236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~  294 (344)
T KOG4532|consen  236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD  294 (344)
T ss_pred             ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence            432    223556899999999998664  45545456789999999998877766443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.55  E-value=2e-05  Score=88.42  Aligned_cols=183  Identities=12%  Similarity=0.071  Sum_probs=118.3

Q ss_pred             EEccCCCEEEEEe--CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC----eEEEEEcCCcceeeec
Q 001352          810 ALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKL  883 (1093)
Q Consensus       810 ~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~i~iwd~~~~~~~~~l  883 (1093)
                      -++|||+.+...+  .+.+.+.|.++.+...++.... ....++++| +++++++.+.+.    ++..-+..+...+..+
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence            3567888775554  4778899999888777765333 456789999 888888776322    2222222211111111


Q ss_pred             ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC----CceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE--eC
Q 001352          884 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HE  957 (1093)
Q Consensus       884 ~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d  957 (1093)
                      .-.  .+  -++.++|++...  .++.|.+.|..+    +.. ....+....       ....+++||||++++++  .+
T Consensus       277 ni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~-v~~yIPVGK-------sPHGV~vSPDGkylyVanklS  342 (635)
T PRK02888        277 NIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSA-LTRYVPVPK-------NPHGVNTSPDGKYFIANGKLS  342 (635)
T ss_pred             chH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcc-eEEEEECCC-------CccceEECCCCCEEEEeCCCC
Confidence            100  00  133457877665  367799999887    221 112233332       36689999999999984  57


Q ss_pred             CeEEEEEcCCcce------------eeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001352          958 THLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus       958 ~~i~vwd~~~~~~------------~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
                      .++.|+|+++.+.            ......  .......+|.++|....|-.-|..|..|++..
T Consensus       343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            8999999987653            333222  33445678999999888999999999999987

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=1.4e-05  Score=82.03  Aligned_cols=251  Identities=13%  Similarity=0.154  Sum_probs=149.0

Q ss_pred             eecCCCCCeEEEEECCCCC-EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEE
Q 001352          392 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  470 (1093)
Q Consensus       392 ~~~~h~~~V~~v~~s~dg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  470 (1093)
                      ++.+|...|..++|||... ++..++.+.+|+|.|+++...+.   .+..| ..+++++|.-|... ++..|-..|.|.|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV  262 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence            5788999999999999877 78889999999999999976554   44556 78999999999876 8999999999999


Q ss_pred             EECCCCce-eEEeec--CCCCeEEeeeccc----CCccEEEEEecCCeEEEEEcCCCC--ceEEecC-CCCceEEEEEcc
Q 001352          471 WDAVTGSR-TYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLG--ARVDYDA-PGLGCTRMAYSA  540 (1093)
Q Consensus       471 wd~~~~~~-~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~-~~~~v~~~~~s~  540 (1093)
                      ||++..+- +..+.+  ...+|..++..+.    +.+.+++..+.+  +..|++....  ....... ..+.+.++.+.+
T Consensus       263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~  340 (463)
T KOG1645|consen  263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG  340 (463)
T ss_pred             EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence            99986543 223322  2334444432211    122344444433  3445443222  2222222 244666777777


Q ss_pred             CCCEEEEEecCCCCceeEE----EEeCCCCeeeeeee----cccc-cCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCC
Q 001352          541 NGRRLFSCGTSKEGESFLV----EWNESEGAIKRTYQ----GLQL-QHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK  610 (1093)
Q Consensus       541 d~~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~----~~~~-~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~~  610 (1093)
                      -.+.++...........++    --|-.+|..+-.-+    |... ....-..+.-.++.++++. +...+.+.+||..+
T Consensus       341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s  420 (463)
T KOG1645|consen  341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS  420 (463)
T ss_pred             ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence            6666666554321111111    11222332221111    1110 0001112223455566665 66778999999999


Q ss_pred             CceEEEEecCCCCCCCceEEEec-C-CCEEEEEECCCeEEEEEcC
Q 001352          611 VQLLTTIDAGGGLPENPRICFNK-N-GTLLAVIANENRIKILETP  653 (1093)
Q Consensus       611 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~~~~~dg~i~iw~~~  653 (1093)
                      ++.++++....   ++..++... + +.+|++-+ |..++||..+
T Consensus       421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence            99999998763   356665543 3 34555554 4578887654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.54  E-value=1.4e-05  Score=83.70  Aligned_cols=195  Identities=14%  Similarity=0.112  Sum_probs=120.9

Q ss_pred             CCCEEEEE-eCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec-cccc---C
Q 001352          814 NDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHS---K  888 (1093)
Q Consensus       814 dg~~la~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l-~~h~---~  888 (1093)
                      ++..+.++ .++.+..||..+|+.+.++............   .+..+++++.++.++.+|..+|+.+.+. ....   .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence            44455555 5799999999999999887753321122222   2345666778889999999999998874 3221   1


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCccc--CCCCceEEEEccCCCEEEEEeCCe-EEEEEc
Q 001352          889 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT--LAPSETHIQFHKDQTRFLLVHETH-LAIYEA  965 (1093)
Q Consensus       889 ~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~dg~~l~~~~d~~-i~vwd~  965 (1093)
                      .........++..++.+..++.|..+|..+|+..-............  ....+..-....++..+++..++. +.+ |+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~  190 (238)
T PF13360_consen  112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DL  190 (238)
T ss_dssp             TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ET
T ss_pred             cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-EC
Confidence            12223333347888888889999999999987644333322221110  000122333334554444456665 555 99


Q ss_pred             CCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEE
Q 001352          966 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1016 (1093)
Q Consensus       966 ~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~ 1016 (1093)
                      .+++.+-. ..  ...+.. ....++..|+.++.++.|..||+.+|+.+..
T Consensus       191 ~tg~~~w~-~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  191 ATGEKLWS-KP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TTTEEEEE-EC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CCCCEEEE-ec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            99986532 21  222322 2457788888888999999999999988753

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=2.4e-06  Score=88.63  Aligned_cols=257  Identities=15%  Similarity=0.097  Sum_probs=176.0

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC-CCcEEEEECC
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAV  474 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~  474 (1093)
                      |.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|.+.|.+++.+.|+.  ++.|.+. |..++++|++
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence            77777777654 467999999999999998664233333334668999999999999998  7888777 9999999988


Q ss_pred             CCceeEEeec--CCCCeEEeeecccCCc--cEEEEEecCCeEEEEEcCCCCce--EEecCCCCceEEEEEccCCCEEEEE
Q 001352          475 TGSRTYSFEG--HGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSANGRRLFSC  548 (1093)
Q Consensus       475 ~~~~~~~~~~--h~~~v~~~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~d~~~l~~~  548 (1093)
                      +-..+.-++-  -.+.+..+  ...++.  ..-++.-.+|.+.++|-....+.  ..-..|..+|..+.+.+-+..+++.
T Consensus        85 n~DminmiKL~~lPg~a~wv--~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi  162 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPGFAEWV--TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI  162 (558)
T ss_pred             ccchhhhcccccCCCceEEe--cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence            7655432221  12222211  111111  23344456788999987655432  2345577899999999999988886


Q ss_pred             ecCCCCceeEEEEeCCC------Ceeeeee------ecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001352          549 GTSKEGESFLVEWNESE------GAIKRTY------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT  616 (1093)
Q Consensus       549 ~~~~~~~~~i~iwd~~~------~~~~~~~------~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  616 (1093)
                      ..    .|.|.-|....      .+..-.+      .+.........++.|+|++..+.+-+.|..|++++..+|+.++.
T Consensus       163 D~----~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  163 DI----SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             cc----cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence            43    67899998763      1111111      11111235678999999999999999999999999999887654


Q ss_pred             EecCC-------------------------------CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecc
Q 001352          617 IDAGG-------------------------------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  662 (1093)
Q Consensus       617 ~~~~~-------------------------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  662 (1093)
                      +....                               ....-..++|...|++|+.++--| |++.++.++...+.+.
T Consensus       239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             hhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence            43210                               011234578888899998887754 8899999887766554

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.52  E-value=3.6e-07  Score=91.36  Aligned_cols=168  Identities=16%  Similarity=0.117  Sum_probs=126.1

Q ss_pred             eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC
Q 001352          339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  418 (1093)
Q Consensus       339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d  418 (1093)
                      +.++||-+-.-.-++.+.+-.|-+-|++||....                    + ...+.|.++.|...+.++..|+.+
T Consensus       215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRn  273 (425)
T KOG2695|consen  215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRN  273 (425)
T ss_pred             hhhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccC
Confidence            3346664332223444556789999999986542                    1 256789999999999999999999


Q ss_pred             CEEEEEEccCCCc--ccceEEeccccccEEEEEeeC-CCCcEEEEEEcCCCcEEEEECCCCce---eEEeecCCCCeEEe
Q 001352          419 HIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSL  492 (1093)
Q Consensus       419 ~~i~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~h~~~v~~~  492 (1093)
                      |.|...|+..+..  ......+ -|...|+++.... +++  +|++.+.+|+|++||.+.-++   ++++.||...-.-+
T Consensus       274 geI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l  350 (425)
T KOG2695|consen  274 GEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL  350 (425)
T ss_pred             CcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence            9999999986521  1111122 5999999998877 555  788999999999999987666   88899997766666


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001352          493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG  530 (1093)
Q Consensus       493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  530 (1093)
                      -++..+....+++++.|...|+|.++.+....+.+.+.
T Consensus       351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             ccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            56666677789999999999999999888777665443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.51  E-value=5.7e-05  Score=83.67  Aligned_cols=267  Identities=14%  Similarity=0.190  Sum_probs=148.5

Q ss_pred             cCCCceEEEEE--------ccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352          344 HPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  415 (1093)
Q Consensus       344 spdg~~llasg--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~  415 (1093)
                      |||++++|+.-        +..+.+.|||+++++...                    +......+....|||||+++|..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v   60 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV   60 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence            79999766632        123678899999876553                    22225678899999999999998


Q ss_pred             EcCCEEEEEEccCCCcccceEEecc-------c---------cccEEEEEeeCCCCcEEEEEEcCCCc------------
Q 001352          416 YSKHIVQLYAYHGGSDARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKT------------  467 (1093)
Q Consensus       416 ~~d~~i~iwd~~~~~~~~~~~~~~~-------h---------~~~v~~~~~s~d~~~l~l~s~~~d~~------------  467 (1093)
                      . ++.|.+++..++...+.  +..|       -         -+.-..+-|||||+++.++... +..            
T Consensus        61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d-~~~v~~~~~~~~~~~  136 (353)
T PF00930_consen   61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD-EREVPEYPLPDYSPP  136 (353)
T ss_dssp             E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE--TTS-EEEEEEESSS
T ss_pred             e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC-CcCCceEEeeccCCc
Confidence            5 56799999877643221  2222       0         1123568899999953332222 122            


Q ss_pred             -----------------------EEEEECCCCceeE-Ee----ecCCCCeEEeeecccCCccEEEEE--ecCC---eEEE
Q 001352          468 -----------------------IKVWDAVTGSRTY-SF----EGHGAPVYSLCPHAKENIHFIFSI--SVDG---KIKA  514 (1093)
Q Consensus       468 -----------------------i~vwd~~~~~~~~-~~----~~h~~~v~~~~~~~~~~~~~l~s~--~~dg---~i~v  514 (1093)
                                             +.|+|+.+++... ..    ..-..-+..+.|.+  ++..|+..  ..+.   .+.+
T Consensus       137 ~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~--d~~~l~~~~~nR~q~~~~l~~  214 (353)
T PF00930_consen  137 DSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP--DGKRLWVQWLNRDQNRLDLVL  214 (353)
T ss_dssp             TESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE--TTEEEEEEEEETTSTEEEEEE
T ss_pred             cccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC--CCcEEEEEEcccCCCEEEEEE
Confidence                                   2334444443321 11    11223344555543  33322222  2222   2556


Q ss_pred             EEcCCCCceEEecCC-CCc---eEEEEEc-cCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCe-EEEEEc
Q 001352          515 WLYDSLGARVDYDAP-GLG---CTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-SVVHFD  588 (1093)
Q Consensus       515 wd~~~~~~~~~~~~~-~~~---v~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v-~~v~~~  588 (1093)
                      +|..++......... ...   .....+. +++..++..+. .++-..|++++..++.......| .   -.| ..+.++
T Consensus       215 ~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G-~---~~V~~i~~~d  289 (353)
T PF00930_consen  215 CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSG-D---WEVTSILGWD  289 (353)
T ss_dssp             EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-S-S---S-EEEEEEEE
T ss_pred             EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccC-c---eeecccceEc
Confidence            677665554433222 222   2345554 78887777765 66788899999988875533333 2   456 346788


Q ss_pred             CCCCEEEE-EeC----CCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC
Q 001352          589 TAKDQILA-AGD----DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  643 (1093)
Q Consensus       589 ~~~~~l~~-~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  643 (1093)
                      ++++.++. +..    ...|+.-++..+.....+......  ...+.|||+|++++....
T Consensus       290 ~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  290 EDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             CTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred             CCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence            88777654 443    235666666634445555544331  148999999999887654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=1.7e-06  Score=87.90  Aligned_cols=173  Identities=17%  Similarity=0.252  Sum_probs=121.3

Q ss_pred             hHHHHHHHHHhhhhcChHHHHHHHHHhcCCC--------hhHHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHH
Q 001352            5 NKDLVFLILQFLNEEGFTESAHMLERESRFY--------FDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEI   76 (1093)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i   76 (1093)
                      +.-+-|+|+.||..+||.++|..|-++|.+.        .++..++++|++|+...|+.....-...-. +....+-|.+
T Consensus       115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~l  193 (389)
T KOG0396|consen  115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQL  193 (389)
T ss_pred             HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHH
Confidence            3446799999999999999999999999974        237888999999999999988765311101 1222377999


Q ss_pred             HhhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHH--HHHhhccc
Q 001352           77 RKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMML--ELKQIIEA  154 (1093)
Q Consensus        77 ~~~~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~R~~l~~--~l~~~~~~  154 (1093)
                      +.|.|+||+..+++.+|+.+.+++|.|....+...++....++.++....-..   +.+-....|=..+.  .++.+.+-
T Consensus       194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sk---y~~l~~~~rw~~l~~lF~s~a~~l  270 (389)
T KOG0396|consen  194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSK---YLNLLTADRWSVLADLFLSEALKL  270 (389)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCccc---ccCcccHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999999999999888888899999998865433221   11122233333332  23333222


Q ss_pred             CcccccccCCCCCcchHHHHHHHHhHHhhh-hcCCCC
Q 001352          155 NPILQGKLKFPSIKRQRLRRLINQSLNWQH-VHCANP  190 (1093)
Q Consensus       155 ~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~-~~c~~~  190 (1093)
                             ..+|+  ..+|.++|+--+..|. -.|...
T Consensus       271 -------~~i~~--~~~L~~~l~~GLsalKTp~c~~~  298 (389)
T KOG0396|consen  271 -------FGIPI--NPALTIYLQAGLSALKTPRCLND  298 (389)
T ss_pred             -------hCCCC--CcHHHHHHHhhhhhccccccccc
Confidence                   12221  2358888887777773 345443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.47  E-value=3.5e-05  Score=86.58  Aligned_cols=105  Identities=12%  Similarity=0.095  Sum_probs=76.0

Q ss_pred             EEccCCCEEEEEeCCeEEEEEccC----c-eeEEEECCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCCcce----
Q 001352          810 ALSKNDAYLFSASGGVISLYIVMT----F-KTILTIMPPSPTATSLAFNPHDNNVIAIG-MDDSTILIYNARSSEV----  879 (1093)
Q Consensus       810 ~~s~dg~~la~~~dg~i~iwd~~~----~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg-~~dg~i~iwd~~~~~~----  879 (1093)
                      ++.++|++... .++.|.+.|..+    + +.+..+. -......++++| ||++++++ ..+.+|.|.|+.+.+.    
T Consensus       283 a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~  359 (635)
T PRK02888        283 EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDG  359 (635)
T ss_pred             HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence            34567887665 467899999988    3 4444444 555677899999 77776655 4588999999987542    


Q ss_pred             --------eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352          880 --------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       880 --------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~  918 (1093)
                              +.+.+-- ......+|.++|+...|..-|..|..|++..
T Consensus       360 ~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        360 KIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                    3333322 2234578999999888999999999999986

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.46  E-value=5.3e-05  Score=88.98  Aligned_cols=271  Identities=11%  Similarity=0.201  Sum_probs=155.6

Q ss_pred             ccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccC
Q 001352          735 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN  814 (1093)
Q Consensus       735 ~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  814 (1093)
                      ...|.++.|-.++..++.+...|.+.+-+......                       ....    .-...|.+++||||
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------------------eivg----~vd~GI~aaswS~D  120 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-----------------------EIVG----NVDNGISAASWSPD  120 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccce-----------------------eeee----eccCceEEEeecCC
Confidence            36899999999999999999999988864332111                       0000    14678999999999


Q ss_pred             CCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc-----ee------eec
Q 001352          815 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-----VI------SKL  883 (1093)
Q Consensus       815 g~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~-----~~------~~l  883 (1093)
                      +++++..+.+..-+....+..++..-.-+.      .-.+ .++.+-+|. ...=.-+.-..|+     .+      ...
T Consensus       121 ee~l~liT~~~tll~mT~~f~~i~E~~L~~------d~~~-~sk~v~VGw-GrkeTqfrgs~gr~~~~~~~~~ek~~~~~  192 (1265)
T KOG1920|consen  121 EELLALITGRQTLLFMTKDFEPIAEKPLDA------DDER-KSKFVNVGW-GRKETQFRGSEGRQAARQKIEKEKALEQI  192 (1265)
T ss_pred             CcEEEEEeCCcEEEEEeccccchhcccccc------cccc-ccccceecc-cccceeeecchhhhcccccccccccccch
Confidence            999999986444444444444443221111      1111 222222221 1111111111111     11      111


Q ss_pred             ccccCCeEEEEEeCCCCEEEEEe----CC-CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE----
Q 001352          884 EGHSKRVTGLVFSDALNILVSSG----GD-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----  954 (1093)
Q Consensus       884 ~~h~~~V~~l~~s~dg~~l~s~s----~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~----  954 (1093)
                      .-|+ .=+.+.|--||+++|+..    .+ +.|+|||-+. ....   ...+..     +--.+++|-|.|.++++    
T Consensus       193 ~~~~-~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns---~se~~~-----~l~~~LsWkPsgs~iA~iq~~  262 (1265)
T KOG1920|consen  193 EQDD-HKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-ALNS---TSEPVE-----GLQHSLSWKPSGSLIAAIQCK  262 (1265)
T ss_pred             hhcc-CCceEEEccCCcEEEEEEEeccCCceeEEEecccc-hhhc---ccCccc-----ccccceeecCCCCeEeeeeec
Confidence            1122 235689999999999842    23 7899999883 3211   111110     13458999999999998    


Q ss_pred             EeCCeEEEEEcCCcceeeee---ecCCCCCEEEEEEccCCCEEEE---EeCCCcEEEEEcCCCceEEEeccccccCCCCC
Q 001352          955 VHETHLAIYEAEELTCLKQW---FPISSVPISQATFSCDCRMVFT---SFVDGTLSIHEASNLEVQCRILSTAYLRPTTS 1028 (1093)
Q Consensus       955 ~~d~~i~vwd~~~~~~~~~~---~~~h~~~v~~~~fs~dg~~l~t---~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~ 1028 (1093)
                      ++++.|.++.-... .-..+   .+....+|..++|+.++..|++   ......|++|-+.+....-+..  -..+..  
T Consensus       263 ~sd~~IvffErNGL-~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~--l~~~~~--  337 (1265)
T KOG1920|consen  263 TSDSDIVFFERNGL-RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE--LQFSQK--  337 (1265)
T ss_pred             CCCCcEEEEecCCc-cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE--Eecccc--
Confidence            25677999986432 21111   1122345999999999999997   4444559999998875432221  011111  


Q ss_pred             CCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352         1029 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus      1029 ~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
                         ..   +.|+|.....|.+-..+|...+.++
T Consensus       338 ---~~---~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  338 ---AL---LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             ---cc---ccccCCCceeEEEEecCCcEEEEEE
Confidence               01   4566655566666666666666554

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.45  E-value=0.00023  Score=78.89  Aligned_cols=304  Identities=12%  Similarity=0.095  Sum_probs=156.2

Q ss_pred             ccCCCEEEEEecCC-----CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001352          539 SANGRRLFSCGTSK-----EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL  613 (1093)
Q Consensus       539 s~d~~~l~~~~~~~-----~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~  613 (1093)
                      |||+++++......     +..+.+.++|+.+++....... .   ..+....|+|+|+.++... ++.|++++..++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence            57888877743211     1245689999999877665554 2   5788899999999988876 57899999887744


Q ss_pred             EEEEecCCC----------------CCCCceEEEecCCCEEEEEECC-CeEEEEEcC---CCceeeecccccccceeeee
Q 001352          614 LTTIDAGGG----------------LPENPRICFNKNGTLLAVIANE-NRIKILETP---ESNSVDAAGVLSDNLRKLSV  673 (1093)
Q Consensus       614 ~~~~~~~~~----------------~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~~---~~~~~~~~~~~~~~i~~~~~  673 (1093)
                      .+ +...+.                ...-..+.|||||++|+....| ..+..+.+.   ....      ....+..+.+
T Consensus        76 ~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~Y  148 (353)
T PF00930_consen   76 TQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRY  148 (353)
T ss_dssp             EE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE-
T ss_pred             EE-eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCccccccc
Confidence            33 222220                1223578899999999887553 333333322   1110      0001111111


Q ss_pred             cCCCceeeeeccCCceEecCCCCCCCccceeeccccc--ceecceeeccCccccccccC--ccccccceEEEEeecCCce
Q 001352          674 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK--SEVEKPLFARPSECQSLLLP--SKVKANKISRLTYNNGGQA  749 (1093)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~--i~~w~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~g~~  749 (1093)
                      .                            ..|...-.  +.++++..+...   .+..+  .......+..+.|+++++.
T Consensus       149 P----------------------------k~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~  197 (353)
T PF00930_consen  149 P----------------------------KAGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKR  197 (353)
T ss_dssp             -----------------------------BTTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEE
T ss_pred             C----------------------------CCCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcE
Confidence            1                            01111112  233343322221   11111  1224567889999999984


Q ss_pred             EEEeecc---ceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc-cCCCEEEEEe--C
Q 001352          750 IFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--G  823 (1093)
Q Consensus       750 l~~~~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~la~~~--d  823 (1093)
                      ++..-.+   ....+..                    .|+.++.+.........+--.......+. +++..++..+  +
T Consensus       198 l~~~~~nR~q~~~~l~~--------------------~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~  257 (353)
T PF00930_consen  198 LWVQWLNRDQNRLDLVL--------------------CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD  257 (353)
T ss_dssp             EEEEEEETTSTEEEEEE--------------------EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred             EEEEEcccCCCEEEEEE--------------------EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence            4444332   2233222                    22223322221111111112222355555 7776666665  4


Q ss_pred             C--eEEEEEccCceeEEEECCCCCCeEE-EEEcCCCCCEEEEEeCCC----eEEEEEcCCcceeeecccccCCeEEEEEe
Q 001352          824 G--VISLYIVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFS  896 (1093)
Q Consensus       824 g--~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~lasg~~dg----~i~iwd~~~~~~~~~l~~h~~~V~~l~~s  896 (1093)
                      |  .|.+++..++. .+.+....-.|+. +.+++.++.+.+++..++    .++.-++.++..+..+....+.-..+.||
T Consensus       258 G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S  336 (353)
T PF00930_consen  258 GYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS  336 (353)
T ss_dssp             SSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred             CCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence            4  46677776665 4466655667755 678884455555666533    56666666234445555433333689999


Q ss_pred             CCCCEEEEEe
Q 001352          897 DALNILVSSG  906 (1093)
Q Consensus       897 ~dg~~l~s~s  906 (1093)
                      |+|++++...
T Consensus       337 pdg~y~v~~~  346 (353)
T PF00930_consen  337 PDGKYYVDTY  346 (353)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9999987543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.44  E-value=5.2e-07  Score=62.84  Aligned_cols=39  Identities=31%  Similarity=0.595  Sum_probs=37.0

Q ss_pred             cceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q 001352          877 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  915 (1093)
Q Consensus       877 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd  915 (1093)
                      |+++..+.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.43  E-value=0.00042  Score=67.26  Aligned_cols=144  Identities=13%  Similarity=0.093  Sum_probs=94.5

Q ss_pred             eecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEE
Q 001352          342 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV  421 (1093)
Q Consensus       342 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i  421 (1093)
                      ..-||.+.+++.|+..+.++--|..+|+..-+..                    -+..|.+-+.- -|.+++.|+..|.+
T Consensus        17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~i--------------------lg~RiE~sa~v-vgdfVV~GCy~g~l   75 (354)
T KOG4649|consen   17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--------------------LGVRIECSAIV-VGDFVVLGCYSGGL   75 (354)
T ss_pred             EEecCCceEEEEecCCceEEEecCCCCcEEeehh--------------------hCceeeeeeEE-ECCEEEEEEccCcE
Confidence            3445667789999999999999999998765311                    11223222221 47789999999999


Q ss_pred             EEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCcc
Q 001352          422 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH  501 (1093)
Q Consensus       422 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  501 (1093)
                      ++-+.++|+.......+..-   -......+++.  ++..|+.|++.+..|..+..++.+.+...+...+-++.+- + .
T Consensus        76 Yfl~~~tGs~~w~f~~~~~v---k~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~  148 (354)
T KOG4649|consen   76 YFLCVKTGSQIWNFVILETV---KVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-G  148 (354)
T ss_pred             EEEEecchhheeeeeehhhh---ccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-c
Confidence            99999999766543322211   11234566777  8999999999999999999999887644333323333322 2 2


Q ss_pred             EEEEEecCCeEE
Q 001352          502 FIFSISVDGKIK  513 (1093)
Q Consensus       502 ~l~s~~~dg~i~  513 (1093)
                      .|..+...|.+.
T Consensus       149 sly~a~t~G~vl  160 (354)
T KOG4649|consen  149 SLYAAITAGAVL  160 (354)
T ss_pred             eEEEEeccceEE
Confidence            344444455443

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.43  E-value=4.7e-06  Score=94.09  Aligned_cols=180  Identities=16%  Similarity=0.177  Sum_probs=132.2

Q ss_pred             CCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEE
Q 001352          814 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG  892 (1093)
Q Consensus       814 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~  892 (1093)
                      ++..++.|+ ...+..+|+.+.+..+...-..+.++-+..   +++++.+|...|+|.+-|..+.+.++++.+|++.|..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            344555555 577888999988887776655555655555   6789999999999999999999999999999999976


Q ss_pred             EEEeCCCCEEEEEeC---------CCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCC--CEEEEEeCCeEE
Q 001352          893 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHETHLA  961 (1093)
Q Consensus       893 l~~s~dg~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~d~~i~  961 (1093)
                      +..  .|+.|+++|.         |.-|+|||+..-+...  +++.+.+       ..-+.|.|.-  +..+++..|...
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q  291 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ  291 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence            655  5899999975         4568999998743222  3333333       3457777753  344447888999


Q ss_pred             EEEcCC---cceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001352          962 IYEAEE---LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1007 (1093)
Q Consensus       962 vwd~~~---~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd 1007 (1093)
                      +-|..+   ...-.......+..+..+++|++|..|+.+..+|.|.+|.
T Consensus       292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            988432   2111111222355699999999999999999999999997

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.40  E-value=3.8e-06  Score=80.97  Aligned_cols=206  Identities=16%  Similarity=0.181  Sum_probs=123.2

Q ss_pred             ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc-eeeeccc-ccCCeEEEEEeCCCCEEEEEeC-----CCcEE
Q 001352          840 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGG-----DAQIF  912 (1093)
Q Consensus       840 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~-~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~-----dg~i~  912 (1093)
                      +..|..+-.+-+.+- -+.-++++..||.+.+++.+.-. ...++.. |.+. -+.+....++.+.+++.     -+..+
T Consensus        85 ~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~  162 (319)
T KOG4714|consen   85 LAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFY  162 (319)
T ss_pred             eeccCCCCCcccccc-cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeecccee
Confidence            333333333333343 45678999999999999877521 1112221 2221 11222233444443221     12356


Q ss_pred             EEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE--EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEcc-
Q 001352          913 VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-  989 (1093)
Q Consensus       913 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~-  989 (1093)
                      +|+++..+        .+.........|++++-.|..+.+++  +.||.+.+||.........++..|..+++.+-|.| 
T Consensus       163 a~~~~p~~--------t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk  234 (319)
T KOG4714|consen  163 ANTLDPIK--------TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK  234 (319)
T ss_pred             eecccccc--------cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence            67666522        11111111134889999998777766  47789999999999888888889999999999998 


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceEEEec---cccccCCCCCCCccce------------eEE-EeCCCCCCEEEEEeCC
Q 001352          990 DCRMVFTSFVDGTLSIHEASNLEVQCRIL---STAYLRPTTSCLHVYP------------HAI-AAHPLKPTQFAVGLTN 1053 (1093)
Q Consensus       990 dg~~l~t~~~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~v~~------------~~~-~~~p~d~~~l~~~~~d 1053 (1093)
                      ++..|+|+++||.+--||..+--+-....   -..|+..    +.+++            +++ +|+- -|..|++|++-
T Consensus       235 ~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsg----D~v~s~i~i~~ll~~~~~SinsfDV-~g~~lVcgtd~  309 (319)
T KOG4714|consen  235 NPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSG----DPVKSRIEITSLLPSRSLSINSFDV-LGPCLVCGTDA  309 (319)
T ss_pred             CchheeEecCCCcEEEEcCCCceEEecCccccccccccC----CcccceEeeeccccccceeeeeeec-cCceEEecccc
Confidence            67899999999999999988532221111   1112222    12221            111 2332 36789999999


Q ss_pred             CcEEEEe
Q 001352         1054 GEVYVIE 1060 (1093)
Q Consensus      1054 g~v~~w~ 1060 (1093)
                      +.|++.+
T Consensus       310 eaIyl~~  316 (319)
T KOG4714|consen  310 EAIYLTR  316 (319)
T ss_pred             ceEEEec
Confidence            9999875

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=98.39  E-value=8.2e-07  Score=83.96  Aligned_cols=134  Identities=22%  Similarity=0.264  Sum_probs=96.6

Q ss_pred             HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHH
Q 001352           38 MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQ  117 (1093)
Q Consensus        38 ~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~  117 (1093)
                      ...++++|++||++.|++.+.....---... ..+.|.|++|+|+||+..++..+|+.+.|+++.|......+.++++..
T Consensus         5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~-~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~   83 (145)
T PF10607_consen    5 RKKIRQAILNGDIDPAIEWLNENFPELLKRN-SSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS   83 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcC-CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            6789999999999999999987522111111 238899999999999999999999999999997665435567788888


Q ss_pred             hhcccCccc--ccccccccCCChHHHHHHHHHHHhhcccCcccccccCCCCCc-chHHHHHHHHhHHhh
Q 001352          118 LLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNWQ  183 (1093)
Q Consensus       118 l~~~~~~~~--~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q  183 (1093)
                      ++...+..+  ...+..+.  ..+.|+.+.+.+.+.+-....         +| .+.|..++.+....+
T Consensus        84 lL~~~~~~~~~~s~~~~l~--~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l  141 (145)
T PF10607_consen   84 LLAYPDPEEPLPSPYKELL--SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL  141 (145)
T ss_pred             HHHcCCcccccchHHHHHh--ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence            887766554  22333222  236788888888876655332         33 567888887765443

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.32  E-value=0.0015  Score=69.49  Aligned_cols=280  Identities=14%  Similarity=0.131  Sum_probs=140.0

Q ss_pred             eeecCCCceEEEEEccCCc--EEEEecCCCceeEEeeeeeeecccccceeeeeeecCCC-CCeEEEEECCCCCEEEEEEc
Q 001352          341 MDFHPVQHTLLLVGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYS  417 (1093)
Q Consensus       341 ~~~spdg~~llasg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~s~dg~~las~~~  417 (1093)
                      =+|.+||++||.++..||.  +.+.|+.+++..+                    |+... .......++|+++.++....
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~  100 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN  100 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence            3689999988988877665  6677888887664                    33322 22224667899999887767


Q ss_pred             CCEEEEEEccCCCcccceEEeccccccEEEEEee--CCCCcEEEEEEc----------------------CCCcEEEEEC
Q 001352          418 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCG----------------------DDKTIKVWDA  473 (1093)
Q Consensus       418 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s--~d~~~l~l~s~~----------------------~d~~i~vwd~  473 (1093)
                      ...|+--|+.+.+.. .  .+.-....+-...|.  .|+.  .++..-                      ..+.|.--|+
T Consensus       101 ~~~l~~vdL~T~e~~-~--vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl  175 (386)
T PF14583_consen  101 GRSLRRVDLDTLEER-V--VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL  175 (386)
T ss_dssp             TTEEEEEETTT--EE-E--EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred             CCeEEEEECCcCcEE-E--EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence            778999999987632 2  233344555445553  4455  333221                      1234556678


Q ss_pred             CCCceeEEeecCCCCeEEeeecccCCccEEEEEec---CCe-EEEEEcCCCCceE-EecC--CCCceEEEEEccCCCEEE
Q 001352          474 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGK-IKAWLYDSLGARV-DYDA--PGLGCTRMAYSANGRRLF  546 (1093)
Q Consensus       474 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~-i~vwd~~~~~~~~-~~~~--~~~~v~~~~~s~d~~~l~  546 (1093)
                      .+|+....+. -...+..+.|+|... .+|+-|-+   +.. -|+|-+++..... .+..  ....+..=-|.|||..+.
T Consensus       176 ~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~  253 (386)
T PF14583_consen  176 KTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW  253 (386)
T ss_dssp             TT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred             CCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence            8877654443 455667777776543 34444322   221 3667665433322 2222  122344556899999887


Q ss_pred             EEec-CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC----------------CcEEEEECC
Q 001352          547 SCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----------------HVIKIWDMN  609 (1093)
Q Consensus       547 ~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d----------------g~i~iwd~~  609 (1093)
                      .-+. .+..+..|.-+|+.+++.......     ........++||+.++-=+.|                --|++++++
T Consensus       254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~  328 (386)
T PF14583_consen  254 YDSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE  328 (386)
T ss_dssp             EEEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred             EEeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence            6543 344467888899998876443322     233455567888877662322                156778888


Q ss_pred             CCceEEEEecC--------CCCCCCceEEEecCCCEEEEEEC-CCeEEEEEc
Q 001352          610 KVQLLTTIDAG--------GGLPENPRICFNKNGTLLAVIAN-ENRIKILET  652 (1093)
Q Consensus       610 ~~~~~~~~~~~--------~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~  652 (1093)
                      .+.........        .....-....|+|||+.++..++ .|...||-+
T Consensus       329 ~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  329 AGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             TTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             cCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence            77654322211        01112357899999998877665 566666543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.28  E-value=0.00017  Score=80.10  Aligned_cols=140  Identities=10%  Similarity=0.061  Sum_probs=101.7

Q ss_pred             CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352          334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  413 (1093)
Q Consensus       334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la  413 (1093)
                      |...|.--+++..+++ ++.|+.-|.+.+|+-.+|+.....                  ..+-.+.+..+..|++..++|
T Consensus        32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA   92 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA   92 (726)
T ss_pred             CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence            4446777778888886 899999999999999888766421                  223456677788999999999


Q ss_pred             EEEcCCEEEEEEccCCCcccceEE--e-ccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC----ceeEEeecCC
Q 001352          414 VAYSKHIVQLYAYHGGSDARQQLE--I-DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG  486 (1093)
Q Consensus       414 s~~~d~~i~iwd~~~~~~~~~~~~--~-~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~h~  486 (1093)
                      .|+..|.|.++-++.+..-.....  . ..|...|++++|++|+.  .+++|...|.|..-.+.+.    ...+.+....
T Consensus        93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d  170 (726)
T KOG3621|consen   93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED  170 (726)
T ss_pred             hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence            999999999998887433222111  1 23778999999999999  7999999999998877762    1122333345


Q ss_pred             CCeEEeee
Q 001352          487 APVYSLCP  494 (1093)
Q Consensus       487 ~~v~~~~~  494 (1093)
                      +.|..+..
T Consensus       171 s~IVQlD~  178 (726)
T KOG3621|consen  171 SEIVQLDY  178 (726)
T ss_pred             cceEEeec
Confidence            55655543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=9.1e-05  Score=83.82  Aligned_cols=206  Identities=15%  Similarity=0.169  Sum_probs=132.0

Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCC-eEEEEEeCCCCEEEEEeCCCc-----EEEEeCCCCceee-
Q 001352          851 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQT-  923 (1093)
Q Consensus       851 ~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~l~s~s~dg~-----i~iwd~~~~~~~~-  923 (1093)
                      +|++ ++..+|.|+.+|.|.+.+-. -+.+..++++... |+.+....+..+|++.+.|+.     |+||+++..+... 
T Consensus        30 c~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcC-CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            4566 67799999999999888743 4555778877766 555554445578999888765     9999998653332 


Q ss_pred             eeee---ecCC-CcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcC----CcceeeeeecCCCCCEEEEEEccCCCEE
Q 001352          924 CRSL---QTPD-GVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE----ELTCLKQWFPISSVPISQATFSCDCRMV  994 (1093)
Q Consensus       924 ~~~~---~~~~-~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~----~~~~~~~~~~~h~~~v~~~~fs~dg~~l  994 (1093)
                      ..++   .... .....+.++..++.|.+-+.+|+| .+|.|..+.-+    .|.... .......+|+.++|..|++.+
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~-~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD-YSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee-eeccCCCCceeeEEecCCcee
Confidence            2233   2211 111123478999999999999997 77888888532    111111 111227899999999999883


Q ss_pred             EEEeCCCcEEEEEcCCCce-EEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCCcccC
Q 001352          995 FTSFVDGTLSIHEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1071 (1093)
Q Consensus       995 ~t~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~ 1071 (1093)
                      +-+.+-..|.+|.+..... .+...          ..++.--|.++++.. ..|+++ .+..|.+++.++.++.|+..
T Consensus       187 lFv~Tt~~V~~y~l~gr~p~~~~ld----------~~G~~lnCss~~~~t-~qfIca-~~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  187 LFVATTEQVMLYSLSGRTPSLKVLD----------NNGISLNCSSFSDGT-YQFICA-GSEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             EEEEecceeEEEEecCCCcceeeec----------cCCccceeeecCCCC-ccEEEe-cCceEEEEcCCCcceeeeec
Confidence            3334456799999984431 22222          112333467777632 224444 35578999998888888654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.18  E-value=5.8e-06  Score=57.50  Aligned_cols=39  Identities=33%  Similarity=0.494  Sum_probs=36.8

Q ss_pred             ceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001352          834 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN  873 (1093)
Q Consensus       834 ~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd  873 (1093)
                      |+++..+.+|...|++++|+| ++.+|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            467889999999999999999 899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.18  E-value=0.0049  Score=65.73  Aligned_cols=300  Identities=12%  Similarity=0.127  Sum_probs=135.5

Q ss_pred             EEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 001352          536 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT  615 (1093)
Q Consensus       536 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  615 (1093)
                      -+|.+||+.|+.++. .++...+++.|+.+++..+...+..   .......++|+++.++-......|+-.|+.+.+...
T Consensus        41 ~~ft~dG~kllF~s~-~dg~~nly~lDL~t~~i~QLTdg~g---~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~  116 (386)
T PF14583_consen   41 NCFTDDGRKLLFASD-FDGNRNLYLLDLATGEITQLTDGPG---DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV  116 (386)
T ss_dssp             --B-TTS-EEEEEE--TTSS-EEEEEETTT-EEEE---SS----B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred             CCcCCCCCEEEEEec-cCCCcceEEEEcccCEEEECccCCC---CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence            367889998888664 5678889999999999887776543   222245677888888776666789999999988766


Q ss_pred             EEecCCCCCCCceEEE--ecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecC
Q 001352          616 TIDAGGGLPENPRICF--NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  693 (1093)
Q Consensus       616 ~~~~~~~~~~v~~v~~--s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1093)
                      ........  +-...|  +.|+..++-.-....       ............+..    ..                   
T Consensus       117 vy~~p~~~--~g~gt~v~n~d~t~~~g~e~~~~-------d~~~l~~~~~f~e~~----~a-------------------  164 (386)
T PF14583_consen  117 VYEVPDDW--KGYGTWVANSDCTKLVGIEISRE-------DWKPLTKWKGFREFY----EA-------------------  164 (386)
T ss_dssp             EEE--TTE--EEEEEEEE-TTSSEEEEEEEEGG-------G-----SHHHHHHHH----HC-------------------
T ss_pred             EEECCccc--ccccceeeCCCccEEEEEEEeeh-------hccCccccHHHHHHH----hh-------------------
Confidence            65544332  222344  334555432211000       000000000000000    00                   


Q ss_pred             CCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccc-----eeEEeeecCcc
Q 001352          694 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-----VHLMWRWPRND  768 (1093)
Q Consensus       694 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg-----~v~vw~~~~~~  768 (1093)
                        .|....+..--..|..++            .+     .....+..+.|+|....+++-+..|     .-++|-+....
T Consensus       165 --~p~~~i~~idl~tG~~~~------------v~-----~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg  225 (386)
T PF14583_consen  165 --RPHCRIFTIDLKTGERKV------------VF-----EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG  225 (386)
T ss_dssp             -----EEEEEEETTT--EEE------------EE-----EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred             --CCCceEEEEECCCCceeE------------EE-----ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC
Confidence              000000000000011110            00     1345677889999887777776654     23677655321


Q ss_pred             cCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe---CC---eEEEEEccCceeEEEECC
Q 001352          769 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GG---VISLYIVMTFKTILTIMP  842 (1093)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~---dg---~i~iwd~~~~~~~~~~~~  842 (1093)
                      .                    . .....-  ......+..=-|+|||..+..-+   .+   .|.-+|..+++...... 
T Consensus       226 ~--------------------~-~~~v~~--~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-  281 (386)
T PF14583_consen  226 S--------------------N-VKKVHR--RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME-  281 (386)
T ss_dssp             ------------------------EESS-----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE-
T ss_pred             C--------------------c-ceeeec--CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe-
Confidence            1                    0 111100  01233444556899998887654   22   37777888876543322 


Q ss_pred             CCCCeEEEEEcCCCCCEEEEEeCCC----------------eEEEEEcCCcceee---------ecccccC-CeEEEEEe
Q 001352          843 PSPTATSLAFNPHDNNVIAIGMDDS----------------TILIYNARSSEVIS---------KLEGHSK-RVTGLVFS  896 (1093)
Q Consensus       843 ~~~~i~~l~~s~~d~~~lasg~~dg----------------~i~iwd~~~~~~~~---------~l~~h~~-~V~~l~~s  896 (1093)
                       ......+-.++ |++++|-=+.|.                -|+++++..++...         .+.+|.. .=....||
T Consensus       282 -~p~~~H~~ss~-Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FS  359 (386)
T PF14583_consen  282 -MPWCSHFMSSP-DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFS  359 (386)
T ss_dssp             -E-SEEEEEE-T-TSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-
T ss_pred             -CCceeeeEEcC-CCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccC
Confidence             22345666677 887776433321                56677887655321         1122111 12358999


Q ss_pred             CCCCEEEEEe-CCCcEEEEeC
Q 001352          897 DALNILVSSG-GDAQIFVWDV  916 (1093)
Q Consensus       897 ~dg~~l~s~s-~dg~i~iwd~  916 (1093)
                      |||++++-.| ..|...||-+
T Consensus       360 PDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  360 PDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             TTSSEEEEEE-TTSS-EEEEE
T ss_pred             CCCCEEEEECCCCCCccEEEE
Confidence            9999876554 5666666643

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=3.9e-05  Score=86.09  Aligned_cols=188  Identities=12%  Similarity=0.111  Sum_probs=130.0

Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 001352          845 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC  924 (1093)
Q Consensus       845 ~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~  924 (1093)
                      ..++|++++   +++++-|+.+|.|++++.. +.. .+...|+..      ..+|.+++|||.||+|.|-.+.+.+....
T Consensus        40 D~is~~av~---~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   40 DAISCCAVH---DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hHHHHHHhh---cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            456777885   5799999999999999977 444 444446554      56799999999999999999988654332


Q ss_pred             eeeecCCCcccCCCCceEEEEccC-----CCEEEEEeCCeEEEEEcCCcceee-eeecCCCCCEEEEEEccCCCEEEEEe
Q 001352          925 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCDCRMVFTSF  998 (1093)
Q Consensus       925 ~~~~~~~~~~~~~~~v~~~~~s~d-----g~~l~~~~d~~i~vwd~~~~~~~~-~~~~~h~~~v~~~~fs~dg~~l~t~~  998 (1093)
                      .-.+         .++.+++++||     .+.+++|+...+.++.-.-..... .......++|.++.|  .|.++|=++
T Consensus       109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan  177 (846)
T KOG2066|consen  109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN  177 (846)
T ss_pred             EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence            2222         25889999998     466777544437777643211111 112233789999998  577888887


Q ss_pred             CCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352          999 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus       999 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
                      .+| |+|||+.+++.+..+.+....+..    ...+..+.|.+  ...|+. |...+|++..+.
T Consensus       178 d~G-v~vyd~~~~~~l~~i~~p~~~~R~----e~fpphl~W~~--~~~LVI-GW~d~v~i~~I~  233 (846)
T KOG2066|consen  178 DDG-VKVYDTPTRQRLTNIPPPSQSVRP----ELFPPHLHWQD--EDRLVI-GWGDSVKICSIK  233 (846)
T ss_pred             CCC-cEEEeccccceeeccCCCCCCCCc----ccCCCceEecC--CCeEEE-ecCCeEEEEEEe
Confidence            766 899999999998888755532222    34455678886  345554 566688888887

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=0.00012  Score=75.54  Aligned_cols=250  Identities=12%  Similarity=0.102  Sum_probs=142.1

Q ss_pred             HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      .+.|.+|...|..++|||...-|+..++.+..|.|.|+++..++..                   +..| ..+.+++|.-
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDl  245 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDL  245 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeecc
Confidence            5578899999999999999876788999999999999999877754                   3334 7899999998


Q ss_pred             CCC-EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEee------CCCCcEEEEEEcCCCcEEEEECCC--Cce
Q 001352          408 DGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------APCKQISVITCGDDKTIKVWDAVT--GSR  478 (1093)
Q Consensus       408 dg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s------~d~~~l~l~s~~~d~~i~vwd~~~--~~~  478 (1093)
                      |.. +|..|..+|.|.|||+...+.......-.-...+|..++.-      +-|.  +++....+  +..|++.-  +..
T Consensus       246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~  321 (463)
T KOG1645|consen  246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECL  321 (463)
T ss_pred             CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCC
Confidence            764 66677789999999998655432211111123345444432      3344  44444433  55666432  222


Q ss_pred             eEEee-cCCCCeEEeeecccCCccEEEEEecCCe------EEE-EEcCCCCceEEe-cCC-CC------ceEEEEEccCC
Q 001352          479 TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGK------IKA-WLYDSLGARVDY-DAP-GL------GCTRMAYSANG  542 (1093)
Q Consensus       479 ~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~------i~v-wd~~~~~~~~~~-~~~-~~------~v~~~~~s~d~  542 (1093)
                      ...++ +..+...++..++..+ ..|++.-.+.+      +-. -|...+..+... ..+ +.      .-..+.-.++.
T Consensus       322 p~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n  400 (463)
T KOG1645|consen  322 PCVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN  400 (463)
T ss_pred             CcccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence            22221 1234444454443322 34444322110      000 011111111100 000 00      11123334566


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 001352          543 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMN  609 (1093)
Q Consensus       543 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~i~iwd~~  609 (1093)
                      ++++..+.   ..+.+.+||+.+++.++++....    +|..++... ++.-++..-.|..++||..+
T Consensus       401 n~iv~~gd---~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  401 NYIVVVGD---STNELILQDPHSFEVVQTLALSE----PVLDICPNDTNGSSYLALLTDDRVHIYKNE  461 (463)
T ss_pred             cEEEEecC---CcceeEEeccchhheeeecccCc----ceeecceeecCCcchhhheecceEEEEecC
Confidence            66665543   36679999999999999887643    666655432 34444444456678887654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=0.00036  Score=79.24  Aligned_cols=201  Identities=11%  Similarity=0.119  Sum_probs=135.1

Q ss_pred             EEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCC-eEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCc-----
Q 001352          810 ALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDS-----TILIYNARSS-----  877 (1093)
Q Consensus       810 ~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg-----~i~iwd~~~~-----  877 (1093)
                      ++++.+..++.|+ +|.|.+.+- +.+.++.++.+... +..+-... +..+|++.+.|+     .++||++..-     
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            5678888888887 688877773 34555777777766 44444433 556888877765     5899998642     


Q ss_pred             -cee--eeccc-----ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCC
Q 001352          878 -EVI--SKLEG-----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  949 (1093)
Q Consensus       878 -~~~--~~l~~-----h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg  949 (1093)
                       .++  .++..     ...++.+++.|.+-+.+|.|-.+|.|..+.-+--+-+..+..-...+.    .+|+.+++..|+
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d~  183 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSDG  183 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecCC
Confidence             233  11112     356788999999999999999999998885443221121222222222    369999999999


Q ss_pred             CE-EEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001352          950 TR-FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1017 (1093)
Q Consensus       950 ~~-l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~ 1017 (1093)
                      +. +.++.-..|.+|.+............|+..+.+..|++-...+++++ +..+.+|+.+.......+
T Consensus       184 ~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  184 KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF  251 (933)
T ss_pred             ceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence            88 55577788999999844433444666788899988887555355554 346999999855444333

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.15  E-value=6.4e-06  Score=82.68  Aligned_cols=139  Identities=16%  Similarity=0.192  Sum_probs=103.9

Q ss_pred             HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      ..+.|. .++.|.++.|.-.+. |+..|..+|.|...|+..+.+=.     .|       ..+   .--|...|+++..-
T Consensus       245 ~~qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~-----~~-------~a~---rlyh~Ssvtslq~L  307 (425)
T KOG2695|consen  245 HQQSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGN-----GW-------CAQ---RLYHDSSVTSLQIL  307 (425)
T ss_pred             cccccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCC-----Cc-------ceE---EEEcCcchhhhhhh
Confidence            334444 466899999999887 79999999999999998752110     00       000   11388999999987


Q ss_pred             C-CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEee--CCCCcEEEEEEcCCCcEEEEECCCCceeEEee
Q 001352          407 P-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCGDDKTIKVWDAVTGSRTYSFE  483 (1093)
Q Consensus       407 ~-dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s--~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  483 (1093)
                      . ++++|.+.+.+|+|++||..--++-.....+.||...-..+-+.  +...  .+++++.|...+||.+..|..+.+++
T Consensus       308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg--~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG--SIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc--eEEEccCeeEEEEEecccCceeeccC
Confidence            7 88999999999999999998666533455788897655444443  3334  78899999999999999999998886


Q ss_pred             c
Q 001352          484 G  484 (1093)
Q Consensus       484 ~  484 (1093)
                      .
T Consensus       386 f  386 (425)
T KOG2695|consen  386 F  386 (425)
T ss_pred             C
Confidence            4

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.14  E-value=4.9e-05  Score=86.18  Aligned_cols=187  Identities=14%  Similarity=0.116  Sum_probs=142.7

Q ss_pred             EEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001352          458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  537 (1093)
Q Consensus       458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  537 (1093)
                      .++.|+....+..+|+.+++..+...-..+.|.-++.    +++++.+|...|+|.+-|..+.+.+.++..|.+.+..  
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--  222 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--  222 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceee--
Confidence            5777888888999999999888877655556777754    6689999999999999999999999999999998855  


Q ss_pred             EccCCCEEEEEecCCC-----CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC-
Q 001352          538 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK-  610 (1093)
Q Consensus       538 ~s~d~~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~dg~i~iwd~~~-  610 (1093)
                      |+-.|+.|++||.+..     .|.+|.+||++..+.+..+.-+.   ++ .-+.|.|. ...+++++..|...+-|..+ 
T Consensus       223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l  298 (1118)
T KOG1275|consen  223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL  298 (1118)
T ss_pred             eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---Cc-hhhhhcccccceEEEEecccceeecccccc
Confidence            4567899999987543     36789999999888776666544   22 44567775 45778889999999988432 


Q ss_pred             Cce-EEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352          611 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  654 (1093)
Q Consensus       611 ~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  654 (1093)
                      +.+ ......+...+.+..+.++++|..++.|..+|.|.+|.-..
T Consensus       299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~  343 (1118)
T KOG1275|consen  299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP  343 (1118)
T ss_pred             CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence            111 22222222234588999999999999999999999998443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.09  E-value=0.0036  Score=72.60  Aligned_cols=138  Identities=12%  Similarity=0.107  Sum_probs=80.4

Q ss_pred             cEEEEEecCCeEEEEEcCCCCceEEecCCCC------ce--EEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeee
Q 001352          501 HFIFSISVDGKIKAWLYDSLGARVDYDAPGL------GC--TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  572 (1093)
Q Consensus       501 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------~v--~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  572 (1093)
                      ..++.++.++.+...|..+++....+.....      .+  ..+++. ++..++.+..    ++.|+-+|.++|+.+-.+
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence            3577777889999999988887776654332      00  011111 2245555543    667999999999988766


Q ss_pred             eccccc--CCCe-EEEEEcCCCCEEEEEe---------CCCcEEEEECCCCceEEEEecCCCCC----------------
Q 001352          573 QGLQLQ--HNSV-SVVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLP----------------  624 (1093)
Q Consensus       573 ~~~~~~--~~~v-~~v~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~----------------  624 (1093)
                      ......  ...+ .+..+.  +..++.++         .+|.++.+|..+|+.+..........                
T Consensus       137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  214 (488)
T cd00216         137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG  214 (488)
T ss_pred             cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence            543300  0001 111222  24455553         36889999999999988775431100                


Q ss_pred             --CC-ceEEEecCCCEEEEEECCC
Q 001352          625 --EN-PRICFNKNGTLLAVIANEN  645 (1093)
Q Consensus       625 --~v-~~v~~s~~~~~l~~~~~dg  645 (1093)
                        .+ ...++.+.+..+++++.++
T Consensus       215 g~~vw~~pa~d~~~g~V~vg~~~g  238 (488)
T cd00216         215 GGTSWASPTYDPKTNLVYVGTGNG  238 (488)
T ss_pred             CCCccCCeeEeCCCCEEEEECCCC
Confidence              01 1345555566777777665

The alignment model contains an 8-bladed beta-propeller.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.00029  Score=79.37  Aligned_cols=186  Identities=13%  Similarity=0.142  Sum_probs=124.7

Q ss_pred             ceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCC
Q 001352          737 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  816 (1093)
Q Consensus       737 ~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  816 (1093)
                      .+.+.+++  ++.++.++.+|.+++++.+.+..                        +. +   .|...      ..+|.
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~------------------------~~-~---~~s~~------~~~Ge   84 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNPK------------------------TN-F---DHSSS------ILEGE   84 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCCccc------------------------cc-c---ccccc------ccCCc
Confidence            34444443  56788999999999987654310                        00 0   02211      56899


Q ss_pred             EEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCC----CCCEEEEEeCCCeEEEEEcCCc--ceeeecccccCC
Q 001352          817 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKR  889 (1093)
Q Consensus       817 ~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~----d~~~lasg~~dg~i~iwd~~~~--~~~~~l~~h~~~  889 (1093)
                      ++++++ ||+|.|-.+.+.+...++. ...++.+++++|+    ..+.+++|+..| +.++.-.--  +.-..+..-.++
T Consensus        85 y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~  162 (846)
T KOG2066|consen   85 YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP  162 (846)
T ss_pred             eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence            999999 6999999998888777665 5578999999993    256888899888 777654321  111134456689


Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcC
Q 001352          890 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE  966 (1093)
Q Consensus       890 V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~  966 (1093)
                      |.++.|.  |+++|-++.+| |+|||+..+...+  .++.+............+.|.++.+ |++|-..+|+|..+.
T Consensus       163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK  233 (846)
T ss_pred             eEEEEec--CcEEEEecCCC-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence            9999996  88999999888 9999999866443  2222222211112345667776655 566777778888776

>smart00668 CTLH C-terminal to LisH motif

Probab=98.03  E-value=2.9e-06  Score=65.28  Aligned_cols=53  Identities=34%  Similarity=0.595  Sum_probs=42.5

Q ss_pred             hHHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhhhhhccCCCH
Q 001352           37 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI   90 (1093)
Q Consensus        37 ~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~   90 (1093)
                      ++..++++|++|+|+.|++.+...........+ .+.|.|++|+|+||++.++.
T Consensus         4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence            478899999999999999999887432222223 48999999999999988764

Alpha-helical motif of unknown function.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.01  E-value=0.004  Score=68.66  Aligned_cols=115  Identities=16%  Similarity=0.127  Sum_probs=82.5

Q ss_pred             ceEEEEccC-CCEEEEE-----eCC----eEEEEEcCCcce--eeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001352          940 ETHIQFHKD-QTRFLLV-----HET----HLAIYEAEELTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1007 (1093)
Q Consensus       940 v~~~~~s~d-g~~l~~~-----~d~----~i~vwd~~~~~~--~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd 1007 (1093)
                      ..++.||-. ...+.+.     .+|    .-.+|+....+.  +........+.|.+++++|+...|+.|..||+|.+||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            467788763 3444431     233    255777765543  3333334688999999999999999999999999999


Q ss_pred             cCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCC
Q 001352         1008 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1067 (1093)
Q Consensus      1008 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~ 1067 (1093)
                      ...+.....-  .          .+.|..++||| +|..+++|+..|.+++||+.-+..+
T Consensus       288 ~~~~~t~~~k--a----------~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi~  334 (545)
T PF11768_consen  288 TTRGVTLLAK--A----------EFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPIK  334 (545)
T ss_pred             cCCCeeeeee--e----------cccceEEEEcC-CCcEEEEEcCCceEEEEEeecCccc
Confidence            9887544221  1          24455799999 5899999999999999998654443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.97  E-value=0.0039  Score=72.25  Aligned_cols=246  Identities=13%  Similarity=0.117  Sum_probs=139.7

Q ss_pred             EEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC--CCCEEEEEE---------cCC
Q 001352          351 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAY---------SKH  419 (1093)
Q Consensus       351 lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--dg~~las~~---------~d~  419 (1093)
                      +..++.+|.|.-+|.++|+.+-.+...                 .+...-..+.-+|  .+..++.++         .++
T Consensus       113 V~v~~~~g~v~AlD~~TG~~~W~~~~~-----------------~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g  175 (488)
T cd00216         113 VFFGTFDGRLVALDAETGKQVWKFGNN-----------------DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRG  175 (488)
T ss_pred             EEEecCCCeEEEEECCCCCEeeeecCC-----------------CCcCcceEecCCCEEECCEEEEeccccccccCCCCc
Confidence            667788999999999999987543321                 1100000011111  123444443         367


Q ss_pred             EEEEEEccCCCcccceEEecc----------------cc-ccE-EEEEeeCCCCcEEEEEEcCCC---------------
Q 001352          420 IVQLYAYHGGSDARQQLEIDA----------------HV-GNV-NDLAFSAPCKQISVITCGDDK---------------  466 (1093)
Q Consensus       420 ~i~iwd~~~~~~~~~~~~~~~----------------h~-~~v-~~~~~s~d~~~l~l~s~~~d~---------------  466 (1093)
                      .+.-+|..+|+.+-.......                +. ..| ...++.+.+.  .++.++.++               
T Consensus       176 ~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g--~V~vg~~~g~~~~~~~~~~~~~~~  253 (488)
T cd00216         176 ALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN--LVYVGTGNGSPWNWGGRRTPGDNL  253 (488)
T ss_pred             EEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC--EEEEECCCCCCCccCCccCCCCCC
Confidence            888899998876543211100                00 011 1234444445  455565454               


Q ss_pred             ---cEEEEECCCCceeEEeecCCCCeEE------eeecc--cCCc---cEEEEEecCCeEEEEEcCCCCceEEecCCCCc
Q 001352          467 ---TIKVWDAVTGSRTYSFEGHGAPVYS------LCPHA--KENI---HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG  532 (1093)
Q Consensus       467 ---~i~vwd~~~~~~~~~~~~h~~~v~~------~~~~~--~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  532 (1093)
                         .|.-.|..+|+.+..++.-......      ..+..  .-++   ..++.++.+|.+...|..+++.+.......  
T Consensus       254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--  331 (488)
T cd00216         254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--  331 (488)
T ss_pred             ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--
Confidence               7999999999998776421111110      01100  0122   267888899999999999998887654321  


Q ss_pred             eEEEEEccCCCEEEEEecC--------------CCCceeEEEEeCCCCeeeeeeeccccc-----CCCe--EEEEEcCCC
Q 001352          533 CTRMAYSANGRRLFSCGTS--------------KEGESFLVEWNESEGAIKRTYQGLQLQ-----HNSV--SVVHFDTAK  591 (1093)
Q Consensus       533 v~~~~~s~d~~~l~~~~~~--------------~~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v--~~v~~~~~~  591 (1093)
                       ..++.+|  ..++.....              ...++.+.-.|..+|+.+-........     ..+.  ..+.  ..+
T Consensus       332 -~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g  406 (488)
T cd00216         332 -QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAG  406 (488)
T ss_pred             -cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecC
Confidence             1233444  333332110              112567888999999876555432100     0011  1122  245


Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEecCCC
Q 001352          592 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGG  622 (1093)
Q Consensus       592 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  622 (1093)
                      ..+++++.||.|+.+|..+|+.+...+....
T Consensus       407 ~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~  437 (488)
T cd00216         407 NLVFAGAADGYFRAFDATTGKELWKFRTPSG  437 (488)
T ss_pred             CeEEEECCCCeEEEEECCCCceeeEEECCCC
Confidence            7888999999999999999999988876533

The alignment model contains an 8-bladed beta-propeller.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.96  E-value=0.017  Score=66.07  Aligned_cols=252  Identities=15%  Similarity=0.099  Sum_probs=138.1

Q ss_pred             CceeeeecCCCceEEEEEccCCc----EEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGD----TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  412 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l  412 (1093)
                      .+...++||||++++.+-+..|.    +++.|+.+|+.+.. .+                 ..  ..-..++|.+|++.|
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~  184 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGF  184 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEE
Confidence            44467899999986666555554    99999999977643 11                 10  112239999999887


Q ss_pred             EEEEcC-----------CEEEEEEccCCCcccceEEecccccc--EEEEEeeCCCCcEEEEEEcCC--CcEEEEECCCC-
Q 001352          413 GVAYSK-----------HIVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGDD--KTIKVWDAVTG-  476 (1093)
Q Consensus       413 as~~~d-----------~~i~iwd~~~~~~~~~~~~~~~h~~~--v~~~~~s~d~~~l~l~s~~~d--~~i~vwd~~~~-  476 (1093)
                      +....+           ..|+.|++.++..-. ...+......  ...+..++|++.+++.+.+..  ..+.+.|+..+ 
T Consensus       185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~  263 (414)
T PF02897_consen  185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG  263 (414)
T ss_dssp             EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred             EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence            766432           247777877654221 1234443333  678899999996333333322  35778888775 


Q ss_pred             ---ceeEEeecCCCCe-EEeeecccCCccEEEEE---ecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEccCCCEEE
Q 001352          477 ---SRTYSFEGHGAPV-YSLCPHAKENIHFIFSI---SVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLF  546 (1093)
Q Consensus       477 ---~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~---~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l~  546 (1093)
                         .....+......+ ..+...   ++.+++..   ...+.|...++.....   ...+..+...+.-..+...+.+|+
T Consensus       264 ~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv  340 (414)
T PF02897_consen  264 SPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV  340 (414)
T ss_dssp             TSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred             CCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence               2333443333333 333322   22333333   2335677777777653   224444444333333444566666


Q ss_pred             EEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE--Ee--CCCcEEEEECCCCceEE
Q 001352          547 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AG--DDHVIKIWDMNKVQLLT  615 (1093)
Q Consensus       547 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~~  615 (1093)
                      .... .++...|+++++..+..........  .+.|..+...++++.+..  .|  .-++++.||+.+++...
T Consensus       341 l~~~-~~~~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~  410 (414)
T PF02897_consen  341 LSYR-ENGSSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL  410 (414)
T ss_dssp             EEEE-ETTEEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred             EEEE-ECCccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence            5543 3457789999998444444444433  245666665566655443  22  34678888988877643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=97.94  E-value=1.4e-05  Score=49.05  Aligned_cols=27  Identities=33%  Similarity=0.642  Sum_probs=24.6

Q ss_pred             HHHHHHHHHhhhhcChHHHHHHHHHhc
Q 001352            6 KDLVFLILQFLNEEGFTESAHMLERES   32 (1093)
Q Consensus         6 ~~~~~li~q~L~~~g~~~s~~~L~~Es   32 (1093)
                      +++.+||++||.+.||.+||.+|.+||
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            578999999999999999999999997

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.93  E-value=0.048  Score=63.45  Aligned_cols=110  Identities=10%  Similarity=0.083  Sum_probs=64.7

Q ss_pred             EEEEEecCCeEEEEEcCCCCceEEecCCCC-ceE----------EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352          502 FIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCT----------RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  570 (1093)
Q Consensus       502 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~----------~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~  570 (1093)
                      .++.++.++.|.-.|..+++.+..+..... .+.          .+++  .+..++.++.    ++.|.-.|..+|+.+-
T Consensus        71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~----dg~l~ALDa~TGk~~W  144 (527)
T TIGR03075        71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTL----DARLVALDAKTGKVVW  144 (527)
T ss_pred             EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcC----CCEEEEEECCCCCEEe
Confidence            666777778888888888887776654221 111          1122  1234555443    5679999999999876


Q ss_pred             eeecccccC-CCeEE-EEEcCCCCEEEEEe------CCCcEEEEECCCCceEEEEec
Q 001352          571 TYQGLQLQH-NSVSV-VHFDTAKDQILAAG------DDHVIKIWDMNKVQLLTTIDA  619 (1093)
Q Consensus       571 ~~~~~~~~~-~~v~~-v~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~  619 (1093)
                      ......... ..+.+ -.+.  +..++++.      .+|.|+-+|.++|+.+-.+..
T Consensus       145 ~~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       145 SKKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             ecccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            654321000 01111 1111  33555543      268999999999998876643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.90  E-value=0.004  Score=63.55  Aligned_cols=195  Identities=9%  Similarity=0.092  Sum_probs=111.4

Q ss_pred             hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352          331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  410 (1093)
Q Consensus       331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~  410 (1093)
                      |.+-.++++.++|.|+.+.|+|+....+.|...+. +|+.++..+                 +.+ -+..-.|++..++.
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~   77 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGNGR   77 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-STTE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECCCE
Confidence            44555689999999998778999888999988886 577776543                 333 35678899988888


Q ss_pred             EEEEEEcCCEEEEEEccCCCcccce-----EEec---cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC---Ccee
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQ-----LEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRT  479 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~-----~~~~---~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---~~~~  479 (1093)
                      ++++--.++.+.++++.........     ..+.   .+...+-.++|.+.++.  |+.+-...-..++.+..   +..+
T Consensus        78 ~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~  155 (248)
T PF06977_consen   78 YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDL  155 (248)
T ss_dssp             EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--
T ss_pred             EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccce
Confidence            8877666899999998443211111     1111   24456899999999884  44455555566665543   2222


Q ss_pred             EEe--------ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CceEEEEEccCC
Q 001352          480 YSF--------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSANG  542 (1093)
Q Consensus       480 ~~~--------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~s~d~  542 (1093)
                      ...        ......+.++++++. .+++++.......|..+| ..++.+..+....         ...-.++|.++|
T Consensus       156 ~~~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G  233 (248)
T PF06977_consen  156 FVSDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG  233 (248)
T ss_dssp             EEEE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred             eeccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence            111        123445778888765 557888888888999998 4444443333222         246789999999


Q ss_pred             CEEEEE
Q 001352          543 RRLFSC  548 (1093)
Q Consensus       543 ~~l~~~  548 (1093)
                      +..++.
T Consensus       234 ~LYIvs  239 (248)
T PF06977_consen  234 NLYIVS  239 (248)
T ss_dssp             -EEEEE
T ss_pred             CEEEEc
Confidence            776664

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.87  E-value=0.0006  Score=74.94  Aligned_cols=114  Identities=14%  Similarity=0.165  Sum_probs=82.2

Q ss_pred             CCeeEEEEcc-CCCEEEEEe-----CCe----EEEEEccCceeEEE---ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 001352          804 EAVPCFALSK-NDAYLFSAS-----GGV----ISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTIL  870 (1093)
Q Consensus       804 ~~v~~l~~s~-dg~~la~~~-----dg~----i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~  870 (1093)
                      ....++.||. +...+.+..     +|.    -.+|++...+..+.   --.....+.+++++| +...|+.|+.||+|.
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSii  284 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSII  284 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEE
Confidence            3446677776 333444332     232    46777765543221   124677899999999 889999999999999


Q ss_pred             EEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001352          871 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  920 (1093)
Q Consensus       871 iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~  920 (1093)
                      +||...+..  .+..+.-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus       285 LyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  285 LYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            999876532  233345567889999999999999999999999997643

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.86  E-value=0.00098  Score=74.29  Aligned_cols=195  Identities=19%  Similarity=0.163  Sum_probs=116.3

Q ss_pred             HHHhhccCCCCceeeeecCCCceEEEEEccC---CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEE
Q 001352          327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  403 (1093)
Q Consensus       327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v  403 (1093)
                      ..+.+..-...+..-+|+|+++.+....-..   ..+.++|+++++.....+                    -.+.-..-
T Consensus       184 ~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~~P  243 (425)
T COG0823         184 NQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNGAP  243 (425)
T ss_pred             ceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccCCc
Confidence            3344554555788889999998744443222   359999999988765433                    22344557


Q ss_pred             EECCCCCEEEEEE-cCC--EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCc--EEEEECCCCce
Q 001352          404 VWSPDGSLLGVAY-SKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSR  478 (1093)
Q Consensus       404 ~~s~dg~~las~~-~d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~~~  478 (1093)
                      +|||||++||.+. .|+  .|.+.|+.++...+    +..-.+.-+.-.|+|||++ ++++.+..|.  |.+.|.+.+..
T Consensus       244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~  318 (425)
T COG0823         244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQV  318 (425)
T ss_pred             cCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCce
Confidence            8999999998774 444  47777887765222    3333333346789999997 3444555554  55566666554


Q ss_pred             eEEeecCCCCeEEeeecccCCccEEEEEecC-Ce--EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001352          479 TYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  550 (1093)
Q Consensus       479 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~  550 (1093)
                       ..+......-.  ....++||.+++..+.. |.  |.+.|+.+... ............-.+.++|+.+...+.
T Consensus       319 -~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         319 -TRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             -eEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence             32322211111  22336677888777643 44  55566655543 222222223345678888888887654

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.86  E-value=2.2e-05  Score=52.52  Aligned_cols=32  Identities=34%  Similarity=0.552  Sum_probs=29.6

Q ss_pred             hhHHHHHHHHHhhhhcChHHHHHHHHHhcCCC
Q 001352            4 LNKDLVFLILQFLNEEGFTESAHMLERESRFY   35 (1093)
Q Consensus         4 ~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~   35 (1093)
                      .++++.++|+|||...||.+|+++|++|+|+.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            36789999999999999999999999999974

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.86  E-value=0.0038  Score=72.83  Aligned_cols=222  Identities=14%  Similarity=0.108  Sum_probs=118.0

Q ss_pred             CCeEEEEEcCCCCCEEEEEe------CCC--eEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCC-CcEEEEe
Q 001352          845 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWD  915 (1093)
Q Consensus       845 ~~i~~l~~s~~d~~~lasg~------~dg--~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d-g~i~iwd  915 (1093)
                      ..+...++|| +++.+|...      .|+  .|.+++.. +.......+.  ..+.-.|+|||+.|++.+.. ..+++.+
T Consensus       350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence            4678999999 777776554      243  55555642 3332222332  37889999999988877543 2233332


Q ss_pred             CCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEE---EEcCCcce-e---eeeecCCCCCEEEEEEc
Q 001352          916 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTC-L---KQWFPISSVPISQATFS  988 (1093)
Q Consensus       916 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~v---wd~~~~~~-~---~~~~~~h~~~v~~~~fs  988 (1093)
                      -..........+............|..+.|||||+.+|...+++|.+   -....|+. +   ..+..+-...+.++.|.
T Consensus       426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~  505 (591)
T PRK13616        426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR  505 (591)
T ss_pred             cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence            21110000000000000001123699999999999999976788877   45455541 1   11222223446889999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCCc
Q 001352          989 CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1068 (1093)
Q Consensus       989 ~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~ 1068 (1093)
                      .+++++ ++..++...+|.+.-.-......+...+.     ..+  .+++-+|   ..+.++..+|.+.+=.-......|
T Consensus       506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~-----~~v--~~vaa~~---~~iyv~~~~g~~~l~~~~~~~~~W  574 (591)
T PRK13616        506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLS-----APV--VAVAASP---STVYVTDARAVLQLPNSDSGDQYW  574 (591)
T ss_pred             cCCEEE-EEecCCCCceEEEecCCccccccCCCCcc-----Cce--EEEecCC---ceEEEEcCCceEEecCCCCCCCCc
Confidence            999865 55555555566554432222221111011     112  3456555   246666777744444333445568


Q ss_pred             ccCCCccccCCCC
Q 001352         1069 AVLPPDEIVGDQP 1081 (1093)
Q Consensus      1069 ~~~~~~~~~~~~~ 1081 (1093)
                      ...+...-....|
T Consensus       575 ~ev~~l~g~~~~p  587 (591)
T PRK13616        575 REVPGLMGPRAAP  587 (591)
T ss_pred             eECccccCCCccc
Confidence            7777665444433

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.84  E-value=0.0049  Score=68.06  Aligned_cols=278  Identities=12%  Similarity=0.130  Sum_probs=142.0

Q ss_pred             ceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCC
Q 001352          737 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  816 (1093)
Q Consensus       737 ~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  816 (1093)
                      .|..+.|+++...++++...|.|.+|++..++.........                            -..+.+.+-  
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~----------------------------~~~~~~~~~--   52 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPP----------------------------DLDYNFRRF--   52 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------------------------------S---
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCc----------------------------ccCcccccc--
Confidence            47889999998899999999999999998764322000000                            000000000  


Q ss_pred             EEEEEeCCeEEEEEccC---------ceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeee--ccc
Q 001352          817 YLFSASGGVISLYIVMT---------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEG  885 (1093)
Q Consensus       817 ~la~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~--l~~  885 (1093)
                         ...++.-.+-|+..         ......+....++|++++.|.  =-++|+|..+|.+.|.|++....+..  +..
T Consensus        53 ---~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~  127 (395)
T PF08596_consen   53 ---SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRE  127 (395)
T ss_dssp             ----GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred             ---cccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccc
Confidence               00000111112111         122333444578999999984  44999999999999999987666543  222


Q ss_pred             ------ccCCeEEEEEeC-----CC---CEEEEEeCCCcEEEEeCCC-Cce-eeeeeeecCCCcccCCCCceEEE-EccC
Q 001352          886 ------HSKRVTGLVFSD-----AL---NILVSSGGDAQIFVWDVDG-WGI-QTCRSLQTPDGVMTLAPSETHIQ-FHKD  948 (1093)
Q Consensus       886 ------h~~~V~~l~~s~-----dg---~~l~s~s~dg~i~iwd~~~-~~~-~~~~~~~~~~~~~~~~~~v~~~~-~s~d  948 (1093)
                            ....|+++.|+.     |+   -.|++|...|.+.+|.+.. ... -..........+.   ..+..+. |+.+
T Consensus       128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---~~i~~I~~i~~~  204 (395)
T PF08596_consen  128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---SPILSIIPINAD  204 (395)
T ss_dssp             --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETT
T ss_pred             cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---CceEEEEEEECC
Confidence                  344688898872     33   4688889999999998852 111 1111111111111   2343333 3222


Q ss_pred             ---------------------CCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEE-----ccCCCEEEEEeCCCc
Q 001352          949 ---------------------QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATF-----SCDCRMVFTSFVDGT 1002 (1093)
Q Consensus       949 ---------------------g~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~f-----s~dg~~l~t~~~dg~ 1002 (1093)
                                           ..+++++++..++++...+.+...+.. ........+++     ...+..|++-..+|.
T Consensus       205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~  283 (395)
T PF08596_consen  205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGS  283 (395)
T ss_dssp             T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE
T ss_pred             CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCc
Confidence                                 125666889999999999888776655 22233344455     236778899999999


Q ss_pred             EEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352         1003 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus      1003 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
                      |+++.++..+.+..........    ...+.  ..++++ +|+.+... ....+.++.+
T Consensus       284 i~i~SLP~Lkei~~~~l~~~~d----~~~~~--~ssis~-~Gdi~~~~-gpsE~~l~sv  334 (395)
T PF08596_consen  284 IRIYSLPSLKEIKSVSLPPPLD----SRRLS--SSSISR-NGDIFYWT-GPSEIQLFSV  334 (395)
T ss_dssp             EEEEETTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE--SSSEEEEEEE
T ss_pred             EEEEECCCchHhhcccCCCccc----ccccc--ccEECC-CCCEEEEe-CcccEEEEEE
Confidence            9999999999988877332111    11122  234555 46654444 4445444444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.79  E-value=0.0043  Score=68.52  Aligned_cols=254  Identities=13%  Similarity=0.121  Sum_probs=133.3

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeE------Ee------------eeeeeeccccc------ceeeeee
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF------IR------------NFKVWDIGACS------MLFKTAL  392 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~------~~------------~~~~~~~~~~~------~~~~~~~  392 (1093)
                      .|+++.|+++... ||+|...|.|.||.+...+.-.      ..            +-++-|+....      ......+
T Consensus         3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            6899999999775 8999999999999875432221      00            11222333211      2233445


Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEecc------ccccEEEEEee---C--CC-CcEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFS---A--PC-KQISVI  460 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~------h~~~v~~~~~s---~--d~-~~l~l~  460 (1093)
                      +....++|++++.| |=-++|.|+.+|.+.|.|+.....+.. ..+..      ....|+++.|+   .  |+ ..+.++
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            66678999999998 666999999999999999977654432 12222      33468888886   2  22 225788


Q ss_pred             EEcCCCcEEEEECC--C-CceeEE----eecCCCCeEEeeecccCCc-------------------cEEEEEecCCeEEE
Q 001352          461 TCGDDKTIKVWDAV--T-GSRTYS----FEGHGAPVYSLCPHAKENI-------------------HFIFSISVDGKIKA  514 (1093)
Q Consensus       461 s~~~d~~i~vwd~~--~-~~~~~~----~~~h~~~v~~~~~~~~~~~-------------------~~l~s~~~dg~i~v  514 (1093)
                      .|...|.+.+|.+.  . +.....    ...+.++|..+......+|                   .-++....+..+++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            89999999999764  1 222111    1246677766653211111                   22455566788999


Q ss_pred             EEcCCCCceEEecCCCCceEEEEEc-----cCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc-cCCCeEEEEEc
Q 001352          515 WLYDSLGARVDYDAPGLGCTRMAYS-----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFD  588 (1093)
Q Consensus       515 wd~~~~~~~~~~~~~~~~v~~~~~s-----~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~v~~~  588 (1093)
                      +...+.+...........+..+++-     ..+..|++...    ++.++++.+..-+.+..+.-... ....+....++
T Consensus       240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis  315 (395)
T PF08596_consen  240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS  315 (395)
T ss_dssp             E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred             EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence            9888776665544332334445553     24555555554    66799999988777766655320 11223445566


Q ss_pred             CCCCEEEEE
Q 001352          589 TAKDQILAA  597 (1093)
Q Consensus       589 ~~~~~l~~~  597 (1093)
                      ++|..++-.
T Consensus       316 ~~Gdi~~~~  324 (395)
T PF08596_consen  316 RNGDIFYWT  324 (395)
T ss_dssp             TTS-EEEE-
T ss_pred             CCCCEEEEe
Confidence            666644444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.75  E-value=0.019  Score=64.50  Aligned_cols=199  Identities=17%  Similarity=0.169  Sum_probs=109.8

Q ss_pred             EEEccCCCEEEEEeCC------------eEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001352          809 FALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS  876 (1093)
Q Consensus       809 l~~s~dg~~la~~~dg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~  876 (1093)
                      ++.+|.|..+|...+.            .|+||+.. |+.+..+.-..+.+.++.|+. +. .|++...||.+++||+. 
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~-  109 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLF-  109 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCC-
Confidence            4566666666666544            58899875 666666543348999999997 44 55567789999999986 


Q ss_pred             cce-------eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeee-ecCCCcccC--CCCceE-EEE
Q 001352          877 SEV-------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL-QTPDGVMTL--APSETH-IQF  945 (1093)
Q Consensus       877 ~~~-------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~--~~~v~~-~~~  945 (1093)
                      |+.       +....-....+....+..+|-.+.+  .++.+.+-+--.... ..+.. ..+......  ...... ..+
T Consensus       110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l  186 (410)
T PF04841_consen  110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPV-KLRRLPEIPGLWTKFHWWPSWTVIPLL  186 (410)
T ss_pred             CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccc-hhhccccCCCcccccccccccccceEe
Confidence            333       1111112222333344445533333  344333332211110 00111 111110000  001111 234


Q ss_pred             ccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001352          946 HKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1019 (1093)
Q Consensus       946 s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 1019 (1093)
                      +.+....+. ..++.+.+.+....+.    . ...+++..+++||+|++||.-..+|.+.+.+.+-.+..+.+..
T Consensus       187 ~~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~  256 (410)
T PF04841_consen  187 SSDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT  256 (410)
T ss_pred             ecCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence            555554444 4445566444332211    1 1246899999999999999999999999998887777777763

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.74  E-value=0.015  Score=59.46  Aligned_cols=201  Identities=11%  Similarity=0.080  Sum_probs=111.6

Q ss_pred             CCCCeeEEEEccCCCEEEEEeC--CeEEEEEccCceeEEEECCC-CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352          802 SQEAVPCFALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  878 (1093)
Q Consensus       802 ~~~~v~~l~~s~dg~~la~~~d--g~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~  878 (1093)
                      -...+..++|.|+...|++..|  +.|..++. +|+.++++.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccc
Confidence            4556999999998776666653  77877786 57888876533 35788899987 77777766668999999984321


Q ss_pred             ------eeeecc-----cccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC---CceeeeeeeecCCCcccCCCCceEEE
Q 001352          879 ------VISKLE-----GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQ  944 (1093)
Q Consensus       879 ------~~~~l~-----~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~  944 (1093)
                            ....+.     .+...+-.++|.|.++.|+.+-+..-..|+.+..   .....................+.+++
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~  177 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS  177 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence                  111121     2455689999999988888887777777777764   11111000111110111112478999


Q ss_pred             EccCCCEEEE-E-eCCeEEEEEcCCcceeeeeec--C-C-----CCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001352          945 FHKDQTRFLL-V-HETHLAIYEAEELTCLKQWFP--I-S-----SVPISQATFSCDCRMVFTSFVDGTLSIH 1006 (1093)
Q Consensus       945 ~s~dg~~l~~-~-~d~~i~vwd~~~~~~~~~~~~--~-h-----~~~v~~~~fs~dg~~l~t~~~dg~v~vw 1006 (1093)
                      +.|....|.+ + .+..|..+| .+|+.+..+.-  + |     -...-.|+|.++|++.++ ++-+..+++
T Consensus       178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            9998766655 5 456788888 55665544322  1 1     135778999999976664 466655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.74  E-value=0.0037  Score=69.96  Aligned_cols=225  Identities=9%  Similarity=0.042  Sum_probs=118.7

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +......+..+.++|+|+++++ +.+|.-.|+.....   +.     ...+.-..++|.+.++   +++-...++|.|+.
T Consensus        28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK   95 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred             CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence            3345556889999999999999 56777888873322   21     1234456788999665   66666688899974


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      --+.+....++. ...+..+..     |.+|...+ ++.|.+||+.+.+.+..+...  +|..+.|+++|.+++..+.  
T Consensus        96 n~~~~~~k~i~~-~~~~~~If~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~--  164 (443)
T PF04053_consen   96 NFKNEVVKSIKL-PFSVEKIFG-----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK--  164 (443)
T ss_dssp             TTEE-TT------SS-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--
T ss_pred             cCccccceEEcC-CcccceEEc-----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC--
Confidence            333333333331 122333321     44555554 448999999999888888755  3889999999999998873  


Q ss_pred             CCceeEEEEeCCCC-----------eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC
Q 001352          553 EGESFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  621 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~-----------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  621 (1093)
                         ..+++++....           .....+....   ..|.+.+|..+  .++-.+.. .++.  +-.|+.-...... 
T Consensus       165 ---~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld-  232 (443)
T PF04053_consen  165 ---DSIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD-  232 (443)
T ss_dssp             ----SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S-
T ss_pred             ---CeEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC-
Confidence               23666654322           0122222112   56888888765  44444444 6665  3344433222222 


Q ss_pred             CCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352          622 GLPENPRICFNKNGTLLAVIANENRIKILETPE  654 (1093)
Q Consensus       622 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  654 (1093)
                        .++.-+.+.+..+.+.....++.+..+.+..
T Consensus       233 --~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  233 --KPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             --S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             --CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence              2366677888778888888888888887763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=0.011  Score=66.07  Aligned_cols=206  Identities=13%  Similarity=0.159  Sum_probs=145.0

Q ss_pred             eeEEEEccCCCEEEEEe--CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeC---CCeEEEEEcCCccee
Q 001352          806 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSEVI  880 (1093)
Q Consensus       806 v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~---dg~i~iwd~~~~~~~  880 (1093)
                      ...+++++++..+....  ++.|.+.|..+.+......... ....++++| +++.+.++..   ++.+.+.|..+++..
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            45678888888555554  5899999988777776655332 667899999 6655555544   689999999998887


Q ss_pred             eecccccCCeEEEEEeCCCCEEEEE-eCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE--eC
Q 001352          881 SKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HE  957 (1093)
Q Consensus       881 ~~l~~h~~~V~~l~~s~dg~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d  957 (1093)
                      .....-..+ ..++++|+|+.+..+ ..++.|.+.|.++..... .   ..............++++|+|.++.+.  .+
T Consensus       154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~---~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~  228 (381)
T COG3391         154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G---SVGSLVGVGTGPAGIAVDPDGNRVYVANDGS  228 (381)
T ss_pred             EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c---ccccccccCCCCceEEECCCCCEEEEEeccC
Confidence            775433334 889999999966554 478899999987754321 1   100011111245789999999987773  22


Q ss_pred             --CeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCC-CcEEEEEcCCCceEEEec
Q 001352          958 --THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-GTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       958 --~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~d-g~v~vwd~~~~~~~~~~~ 1018 (1093)
                        +.+...|..++.........-......+.++|+|+.+.+.... +.+.+-|..+......+.
T Consensus       229 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         229 GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence              5899999998887765222211145678999999998887544 889999999988876655

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.72  E-value=0.017  Score=57.55  Aligned_cols=256  Identities=16%  Similarity=0.165  Sum_probs=140.7

Q ss_pred             eEEEEEcCCCCE-EEEEeCCCc-EEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC-----CeEEEEEcCC
Q 001352          582 VSVVHFDTAKDQ-ILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPE  654 (1093)
Q Consensus       582 v~~v~~~~~~~~-l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~  654 (1093)
                      -..++|+|.... ++.+-.-|+ ..++|..+.+...++........--.-+|||||++|+..-.|     |.|-|||...
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            445778887544 344555554 568999988887777654332222345799999999876543     6778888763


Q ss_pred             C-ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccc
Q 001352          655 S-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV  733 (1093)
Q Consensus       655 ~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  733 (1093)
                      + ..+..+..                                                                      
T Consensus       150 ~fqrvgE~~t----------------------------------------------------------------------  159 (366)
T COG3490         150 GFQRVGEFST----------------------------------------------------------------------  159 (366)
T ss_pred             ccceeccccc----------------------------------------------------------------------
Confidence            3 11111111                                                                      


Q ss_pred             cccceEEEEeecCCceEEEeeccceeEEe-eecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc
Q 001352          734 KANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  812 (1093)
Q Consensus       734 ~~~~i~~l~~s~~g~~l~~~~~dg~v~vw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  812 (1093)
                      |.-.-..+.+.+||+.++.+..  -|..- ++...+++.+.-   ..++.+.+..+|..+....++..-+...++.++..
T Consensus       160 ~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsM---ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g  234 (366)
T COG3490         160 HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSM---EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIG  234 (366)
T ss_pred             CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhc---CccEEEEeccccchhhhccCchhhhhcceeeeeeC
Confidence            1112234556667765554432  22222 111111111000   01233445566665666666644477789999999


Q ss_pred             cCCCEEEEEe-CC----e-EEEEEccCceeEEEECCC-------CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce
Q 001352          813 KNDAYLFSAS-GG----V-ISLYIVMTFKTILTIMPP-------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  879 (1093)
Q Consensus       813 ~dg~~la~~~-dg----~-i~iwd~~~~~~~~~~~~~-------~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~  879 (1093)
                      +||..++.+. .|    . --+=-...++.+.-+...       ...|-+++.+.+++-..+|.-..+...+||..+|.+
T Consensus       235 ~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v  314 (366)
T COG3490         235 RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV  314 (366)
T ss_pred             CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence            9998887764 11    1 112222334444443322       246778888874555555555566888999999987


Q ss_pred             eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeC
Q 001352          880 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV  916 (1093)
Q Consensus       880 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~  916 (1093)
                      +..-.--  ....++  +...-++..+.+|.+.++.-
T Consensus       315 v~~a~l~--daaGva--~~~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         315 VSEAALP--DAAGVA--AAKGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             Eeccccc--ccccce--eccCceEEecCCceEEeccc
Confidence            7543211  111122  23444555667787887743

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.71  E-value=0.027  Score=64.41  Aligned_cols=248  Identities=13%  Similarity=0.125  Sum_probs=127.3

Q ss_pred             CeEEEEECCCCCEEEEE-EcCC----EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEE-cC--------
Q 001352          399 SVNRVVWSPDGSLLGVA-YSKH----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GD--------  464 (1093)
Q Consensus       399 ~V~~v~~s~dg~~las~-~~d~----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~-~~--------  464 (1093)
                      .+..+++||||+++|.+ +..|    .++++|+.+|+.+..  .+...  ....+.|.+|++. ++.+. ..        
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence            44568899999999977 3333    599999999865432  12211  1123999999985 33333 22        


Q ss_pred             -CCcEEEEECCCCcee--EEeecCCCCeEEeeecccCCccEEEEEecCC----eEEEEEcCCC----CceEEecCCCCce
Q 001352          465 -DKTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSL----GARVDYDAPGLGC  533 (1093)
Q Consensus       465 -d~~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~i~vwd~~~~----~~~~~~~~~~~~v  533 (1093)
                       ...|+.|.+.++..-  ..+.........+....+.|+++++..+..+    .+.+.++...    .....+......+
T Consensus       200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~  279 (414)
T PF02897_consen  200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV  279 (414)
T ss_dssp             CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred             CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence             234888888877543  4444444443222333356777776544332    3667777664    2223333223233


Q ss_pred             -EEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee---eeeeecccccCCCeEEEEEcCCCCEEEE-EeCCC--cEEEE
Q 001352          534 -TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH--VIKIW  606 (1093)
Q Consensus       534 -~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg--~i~iw  606 (1093)
                       ..+...  +..++..+..+...+.|...++.....   ...+..+. ....+..+..  .+++|+. ...++  .|+++
T Consensus       280 ~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~-~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~  354 (414)
T PF02897_consen  280 EYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED-EDVSLEDVSL--FKDYLVLSYRENGSSRLRVY  354 (414)
T ss_dssp             EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S-SSEEEEEEEE--ETTEEEEEEEETTEEEEEEE
T ss_pred             EEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC-CceeEEEEEE--ECCEEEEEEEECCccEEEEE
Confidence             333333  443333333444467788888887653   22333333 0113444443  4555655 33343  57889


Q ss_pred             ECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC----CCeEEEEEcCCCce
Q 001352          607 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS  657 (1093)
Q Consensus       607 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~~  657 (1093)
                      ++..+.....+..... ..+..+...+++..+.....    -+++..||+.+++.
T Consensus       355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            9984555555544322 22344444455554443322    36677788877643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.71  E-value=0.0042  Score=69.35  Aligned_cols=173  Identities=16%  Similarity=0.189  Sum_probs=111.1

Q ss_pred             eEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEe---CC-CeEEEEEcCCcceee--ecccccCCeEEEEEeCC
Q 001352          825 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DD-STILIYNARSSEVIS--KLEGHSKRVTGLVFSDA  898 (1093)
Q Consensus       825 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---~d-g~i~iwd~~~~~~~~--~l~~h~~~V~~l~~s~d  898 (1093)
                      .+.+-|.. +...+.+......+..-+|+| +++.++..+   .. ..+.++++.+++...  .+.++.   ...+||||
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspD  248 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPD  248 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCC
Confidence            34555544 556666665666778889999 676655442   22 369999999886543  344443   45789999


Q ss_pred             CCEEEEE-eCCCc--EEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeC--C--eEEEEEcCCccee
Q 001352          899 LNILVSS-GGDAQ--IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--T--HLAIYEAEELTCL  971 (1093)
Q Consensus       899 g~~l~s~-s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d--~--~i~vwd~~~~~~~  971 (1093)
                      |+.|+.+ ..||.  |.+.|+.++....   +....+.      -+.-.|+|||+.++-.+|  |  .|.+++.+.+...
T Consensus       249 G~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~gi------~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~  319 (425)
T COG0823         249 GSKLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFGI------NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT  319 (425)
T ss_pred             CCEEEEEECCCCCccEEEEcCCCCccee---cccCCcc------ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence            9887755 45665  5556666644111   2222222      236689999999998544  3  5888888877765


Q ss_pred             eeeecCCCCCEEEEEEccCCCEEEEEeCC-Cc--EEEEEcCCCce
Q 001352          972 KQWFPISSVPISQATFSCDCRMVFTSFVD-GT--LSIHEASNLEV 1013 (1093)
Q Consensus       972 ~~~~~~h~~~v~~~~fs~dg~~l~t~~~d-g~--v~vwd~~~~~~ 1013 (1093)
                      +....+.  .-..-.+||||++|+..+.. |.  |.+.|+.++..
T Consensus       320 riT~~~~--~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~  362 (425)
T COG0823         320 RLTFSGG--GNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK  362 (425)
T ss_pred             EeeccCC--CCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence            4433322  22267899999999977743 43  77777777764

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.68  E-value=0.0026  Score=74.12  Aligned_cols=185  Identities=9%  Similarity=0.064  Sum_probs=106.3

Q ss_pred             CCeeEEEEccCCCEEEEEe-------CC--eEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCC--------
Q 001352          804 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD--------  866 (1093)
Q Consensus       804 ~~v~~l~~s~dg~~la~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--------  866 (1093)
                      ..+...++||||+.+|...       +.  .|.+++.. +.. ..+.. ....+.-.|+| |++.|++....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence            3567899999999988765       33  35555542 222 33332 22488899999 77777666432        


Q ss_pred             ----CeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEE---EeCCCCceeeeeeeecCCCcccCCCC
Q 001352          867 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS  939 (1093)
Q Consensus       867 ----g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~  939 (1093)
                          +.+.+.++..++...   ...+.|..+.|||||..+|... ++.|.+   -....++...........+..   ..
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~  498 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT  498 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence                234444554443322   2346799999999999998776 467777   444454422211222222111   23


Q ss_pred             ceEEEEccCCCEEEEEeCCeEEEEEcCC-cceeeeeecC--CCCCEEEEEEccCCCEEEEEeCCCc
Q 001352          940 ETHIQFHKDQTRFLLVHETHLAIYEAEE-LTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGT 1002 (1093)
Q Consensus       940 v~~~~~s~dg~~l~~~~d~~i~vwd~~~-~~~~~~~~~~--h~~~v~~~~fs~dg~~l~t~~~dg~ 1002 (1093)
                      +.++.|..++.+++...++...+|.+.- |.... ...+  ...++.+++-+++  .|+....+|.
T Consensus       499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~  561 (591)
T PRK13616        499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS--TVYVTDARAV  561 (591)
T ss_pred             cccceEecCCEEEEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence            5789999999976554444344454432 22222 1222  2567778887763  3444555663

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.68  E-value=0.043  Score=61.65  Aligned_cols=232  Identities=13%  Similarity=0.092  Sum_probs=111.6

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcc---cceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE-C
Q 001352          398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD-A  473 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd-~  473 (1093)
                      +.|.++.|+.+. .|++...||.+++||+......   .......-....+....+..+|-  .++++  ++.+.+-+ .
T Consensus        81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~n~  155 (410)
T PF04841_consen   81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVNNI  155 (410)
T ss_pred             CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEECC--CCeEEEEeCc
Confidence            899999999865 4556679999999998743200   00001111122233334444553  34433  33344433 2


Q ss_pred             CCCceeEEe---ecCCC-----CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001352          474 VTGSRTYSF---EGHGA-----PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL  545 (1093)
Q Consensus       474 ~~~~~~~~~---~~h~~-----~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  545 (1093)
                      ......+.+   .+...     ...........+....+....++.+.+.+-.....    ....+++..+++||+|+++
T Consensus       156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~i  231 (410)
T PF04841_consen  156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKFI  231 (410)
T ss_pred             cccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCEE
Confidence            211111111   11000     00000001122333444555555555443222111    1124589999999999999


Q ss_pred             EEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCC
Q 001352          546 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE  625 (1093)
Q Consensus       546 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  625 (1093)
                      +....    ++.+.+.+..-.+....+....  ......+.|+.+...++.-  ...+.+....                
T Consensus       232 Al~t~----~g~l~v~ssDf~~~~~e~~~~~--~~~p~~~~WCG~dav~l~~--~~~l~lvg~~----------------  287 (410)
T PF04841_consen  232 ALFTD----SGNLWVVSSDFSEKLCEFDTDS--KSPPKQMAWCGNDAVVLSW--EDELLLVGPD----------------  287 (410)
T ss_pred             EEEEC----CCCEEEEECcccceeEEeecCc--CCCCcEEEEECCCcEEEEe--CCEEEEECCC----------------
Confidence            98875    4557777765555555544432  2445566666543222221  2223333211                


Q ss_pred             CceEEEecCCCEEEEEECCCeEEEEEcCCCceeeeccc
Q 001352          626 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV  663 (1093)
Q Consensus       626 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  663 (1093)
                      -..+.|.-++..++..-.|| ++|........++....
T Consensus       288 ~~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~  324 (410)
T PF04841_consen  288 GDSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPD  324 (410)
T ss_pred             CCceEEeccCceEEeccCCc-eEEEeCCceEEEEECCH
Confidence            12244444455444444455 77776665555555543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.65  E-value=0.089  Score=61.24  Aligned_cols=197  Identities=15%  Similarity=0.074  Sum_probs=116.4

Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccc--cE-------EEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NV-------NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  479 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~v-------~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  479 (1093)
                      +..|.+++.++.|.-.|..+|+.+-... ......  .+       ..+++.  +.  .++.++.|+.+.-.|.++|+.+
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~-~~~~~~~~~~~~~~~~~rg~av~--~~--~v~v~t~dg~l~ALDa~TGk~~  143 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYD-PKLPDDVIPVMCCDVVNRGVALY--DG--KVFFGTLDARLVALDAKTGKVV  143 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEec-CCCCcccccccccccccccceEE--CC--EEEEEcCCCEEEEEECCCCCEE
Confidence            4466666777788888888887554221 111100  10       012222  23  4667788999999999999998


Q ss_pred             EEeecC--C--CCeEEe-eecccCCccEEEEEe------cCCeEEEEEcCCCCceEEecCCCC-----------------
Q 001352          480 YSFEGH--G--APVYSL-CPHAKENIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGL-----------------  531 (1093)
Q Consensus       480 ~~~~~h--~--~~v~~~-~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~-----------------  531 (1093)
                      ......  .  ..+.+- .+  . ++ .++.+.      .+|.|..+|.++++.+..+.....                 
T Consensus       144 W~~~~~~~~~~~~~tssP~v--~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~  219 (527)
T TIGR03075       144 WSKKNGDYKAGYTITAAPLV--V-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPG  219 (527)
T ss_pred             eecccccccccccccCCcEE--E-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccc
Confidence            765421  1  111110 11  1 23 444443      268899999988887765433211                 


Q ss_pred             --------------ce-EEEEEccCCCEEEEEecC-----C---CCc----eeEEEEeCCCCeeeeeeeccc--ccC---
Q 001352          532 --------------GC-TRMAYSANGRRLFSCGTS-----K---EGE----SFLVEWNESEGAIKRTYQGLQ--LQH---  579 (1093)
Q Consensus       532 --------------~v-~~~~~s~d~~~l~~~~~~-----~---~~~----~~i~iwd~~~~~~~~~~~~~~--~~~---  579 (1093)
                                    .+ ..+++.|...+++.+..+     +   .++    ..|.-.|++||+..-.++...  ..+   
T Consensus       220 ~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~  299 (527)
T TIGR03075       220 AKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDG  299 (527)
T ss_pred             cCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccC
Confidence                          11 235677777777766532     1   112    368888999999887776533  111   


Q ss_pred             -CCeEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceE
Q 001352          580 -NSVSVVHFDTAKD---QILAAGDDHVIKIWDMNKVQLL  614 (1093)
Q Consensus       580 -~~v~~v~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~  614 (1093)
                       ....-+.+..+|+   .++.+..+|.+++.|..+|+.+
T Consensus       300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       300 VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence             1122233334665   6678999999999999999986

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=0.16  Score=56.77  Aligned_cols=251  Identities=13%  Similarity=0.118  Sum_probs=162.2

Q ss_pred             CeEEEEECCCCCEEEEEEcCC-EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352          399 SVNRVVWSPDGSLLGVAYSKH-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  477 (1093)
Q Consensus       399 ~V~~v~~s~dg~~las~~~d~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  477 (1093)
                      ....++..+++..+....... .+..-+.... ....  ....-...-..++.++++.+ .+++...++.|.+.|..+.+
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n-~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~  107 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN-TVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT  107 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccc-eeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence            566688888886655543222 3444444421 1111  11111133456788888886 45666667899999988888


Q ss_pred             eeEEeecCCCCeEEeeecccCCccEEEEEec---CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC
Q 001352          478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  554 (1093)
Q Consensus       478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~  554 (1093)
                      ..+....-. ....+++.+  ++..+..+..   ++++.+.|-.+............+ ..++++|+|..++.+..   .
T Consensus       108 ~~~~~~vG~-~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~  180 (381)
T COG3391         108 VLGSIPVGL-GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D  180 (381)
T ss_pred             eeeEeeecc-CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence            877664333 445566644  5555555544   688888888877777664433334 88999999998888762   3


Q ss_pred             ceeEEEEeCCCCeeeeeeecc--cccCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEEEecCCCCCCCceE
Q 001352          555 ESFLVEWNESEGAIKRTYQGL--QLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI  629 (1093)
Q Consensus       555 ~~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~v~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v  629 (1093)
                      ++.|.+.|..+....+ -...  .........+.++|+++++++.-..   +.+.+.|..++............ ....+
T Consensus       181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v  258 (381)
T COG3391         181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV  258 (381)
T ss_pred             CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence            6779999977766553 1100  1112345678999999977775433   69999999998887762222222 35678


Q ss_pred             EEecCCCEEEEEECC-CeEEEEEcCCCceeeecc
Q 001352          630 CFNKNGTLLAVIANE-NRIKILETPESNSVDAAG  662 (1093)
Q Consensus       630 ~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~  662 (1093)
                      ..+|+|..+.+.... +.+.+.|..+........
T Consensus       259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            999999999888554 888888888765555433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.60  E-value=0.007  Score=67.81  Aligned_cols=220  Identities=14%  Similarity=0.145  Sum_probs=115.6

Q ss_pred             eEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCE
Q 001352          738 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY  817 (1093)
Q Consensus       738 i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~  817 (1093)
                      ...+.++|+|+.+++ ..+|...++......                         .      ...+.-..++|.+++++
T Consensus        35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r-------------------------~------k~~G~g~~~vw~~~n~y   82 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWR-------------------------N------KAFGSGLSFVWSSRNRY   82 (443)
T ss_dssp             -SEEEE-TTSSEEEE-EETTEEEEEETTTTE-------------------------E------EEEEE-SEEEE-TSSEE
T ss_pred             CeeEEECCCCCEEEE-EcCCEEEEEEccCCc-------------------------c------cccCceeEEEEecCccE
Confidence            567899999997777 666777776511100                         0      02233456789987765


Q ss_pred             EEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeC
Q 001352          818 LFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD  897 (1093)
Q Consensus       818 la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~  897 (1093)
                      .+.-..++|.|+.--+.+....+... ..+..+-.    |.+|+..+.+ .|.+||..+++.+.++...  +|..+.||+
T Consensus        83 Av~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~  154 (443)
T PF04053_consen   83 AVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSD  154 (443)
T ss_dssp             EEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-T
T ss_pred             EEEECCCeEEEEEcCccccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEEC
Confidence            55445788999743333333344322 12333332    6677766654 8999999999999998743  389999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC---------ceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCc
Q 001352          898 ALNILVSSGGDAQIFVWDVDGW---------GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL  968 (1093)
Q Consensus       898 dg~~l~s~s~dg~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~  968 (1093)
                      +|.+++..+.+. +.|++.+..         .......+....      ..|.+.+|..| -++. +..+.++-  +-.|
T Consensus       155 ~g~~val~t~~~-i~il~~~~~~~~~~~~~g~e~~f~~~~E~~------~~IkSg~W~~d-~fiY-tT~~~lkY--l~~G  223 (443)
T PF04053_consen  155 DGELVALVTKDS-IYILKYNLEAVAAIPEEGVEDAFELIHEIS------ERIKSGCWVED-CFIY-TTSNHLKY--LVNG  223 (443)
T ss_dssp             TSSEEEEE-S-S-EEEEEE-HHHHHHBTTTB-GGGEEEEEEE-------S--SEEEEETT-EEEE-E-TTEEEE--EETT
T ss_pred             CCCEEEEEeCCe-EEEEEecchhcccccccCchhceEEEEEec------ceeEEEEEEcC-EEEE-EcCCeEEE--EEcC
Confidence            999999988775 888776543         000111221111      25788888877 3333 33336665  3333


Q ss_pred             ce--eeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001352          969 TC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1012 (1093)
Q Consensus       969 ~~--~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~ 1012 (1093)
                      +.  +..+    ..++.=+.+.+....+.....|+.|..+.++...
T Consensus       224 e~~~i~~l----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~  265 (443)
T PF04053_consen  224 ETGIIAHL----DKPLYLLGYLPKENRLYLIDRDGNVISYELDLSE  265 (443)
T ss_dssp             EEEEEEE-----SS--EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred             CcceEEEc----CCceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence            32  2221    4466777788877788888888888888776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.53  E-value=0.026  Score=56.19  Aligned_cols=232  Identities=16%  Similarity=0.088  Sum_probs=135.0

Q ss_pred             EEEEccCCC-EEEEEe-CCe-EEEEEccCceeEEEECCCCCC--eEEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCc
Q 001352          808 CFALSKNDA-YLFSAS-GGV-ISLYIVMTFKTILTIMPPSPT--ATSLAFNPHDNNVIAIGMDD-----STILIYNARSS  877 (1093)
Q Consensus       808 ~l~~s~dg~-~la~~~-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~s~~d~~~lasg~~d-----g~i~iwd~~~~  877 (1093)
                      .++|+|.-. -++.+- -|+ ..++|..+.+.+..+....+.  --.=.||| ||++|+..-.|     |.|-|||...+
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence            577777643 444454 355 678898888777665433321  22346999 89999865443     68999999854


Q ss_pred             -ceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEE--------------------EEeCCCCceeeeeeeecCCCcccC
Q 001352          878 -EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF--------------------VWDVDGWGIQTCRSLQTPDGVMTL  936 (1093)
Q Consensus       878 -~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~--------------------iwd~~~~~~~~~~~~~~~~~~~~~  936 (1093)
                       +.+..+..|.-....+.+.+||+.|+.+.  |-|.                    +.|..+++......+.....+   
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~---  225 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ---  225 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh---
Confidence             45677888887788899999999998763  2233                    333333322221111111111   


Q ss_pred             CCCceEEEEccCCCEEEEE-eCC-----eEEEEEcCCcceeeeeecC------CCCCEEEEEEccCCCEEE-EEeCCCcE
Q 001352          937 APSETHIQFHKDQTRFLLV-HET-----HLAIYEAEELTCLKQWFPI------SSVPISQATFSCDCRMVF-TSFVDGTL 1003 (1093)
Q Consensus       937 ~~~v~~~~~s~dg~~l~~~-~d~-----~i~vwd~~~~~~~~~~~~~------h~~~v~~~~fs~dg~~l~-t~~~dg~v 1003 (1093)
                       ..+..++.-+||+.++.+ ..|     --.|=-...|+.+.-+...      -...|-+++..-+..+++ |+-..+..
T Consensus       226 -lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~  304 (366)
T COG3490         226 -LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA  304 (366)
T ss_pred             -cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence             258888899999887763 111     1111111122222211100      134566777776555555 44445567


Q ss_pred             EEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352         1004 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus      1004 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
                      .+||..+|..+....    ++..   ..|     +..   ..-|++.+.+|.+.++.-
T Consensus       305 vi~da~tG~vv~~a~----l~da---aGv-----a~~---~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         305 VIWDAATGAVVSEAA----LPDA---AGV-----AAA---KGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             EEEEcCCCcEEeccc----cccc---ccc-----eec---cCceEEecCCceEEeccc
Confidence            889999999884443    2221   111     111   345788888999988743

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.49  E-value=0.0015  Score=72.96  Aligned_cols=138  Identities=17%  Similarity=0.094  Sum_probs=99.7

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  475 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  475 (1093)
                      |...|.--+++..+++++.|+..|.+++|+-.+++....  ...+-.+.+..+..+++..  ++|.|+..|.|.++-+..
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--~~~~~~~~~~~~~vs~~e~--lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--KNEGATGITCVRSVSSVEY--LVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc--cccCccceEEEEEecchhH--hhhhhcCCceEEeehhhc
Confidence            455677777888999999999999999999998875442  2334555667778888877  788899999999998776


Q ss_pred             Ccee---E--Ee-ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC----ceEEecCCCCceEEEEEc
Q 001352          476 GSRT---Y--SF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYS  539 (1093)
Q Consensus       476 ~~~~---~--~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s  539 (1093)
                      +..-   .  .+ +.|...|++++|  +.|+..+++|...|.|..-.++...    ....+......|..+.+.
T Consensus       108 ~~p~~~~~~t~~d~~~~~rVTal~W--s~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  108 ELPRDLDYVTPCDKSHKCRVTALEW--SKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             cCCCcceeeccccccCCceEEEEEe--cccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            4321   1  11 237888999999  5688999999999999998887721    112333344456555543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.47  E-value=0.031  Score=59.34  Aligned_cols=224  Identities=15%  Similarity=0.092  Sum_probs=137.8

Q ss_pred             eeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCC
Q 001352          340 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH  419 (1093)
Q Consensus       340 ~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~  419 (1093)
                      +-.|.|++..|+.+--..+.|.-|+..+|+....                     .+.+.+.++..-.++..|+++. .+
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~---------------------~~p~~~~~~~~~d~~g~Lv~~~-~g   86 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVF---------------------PSPGGFSSGALIDAGGRLIACE-HG   86 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEE---------------------ECCCCcccceeecCCCeEEEEc-cc
Confidence            4467888887788877789999999987754321                     1334445555555555666553 33


Q ss_pred             EEEEEEccCCCcccceEEec-c-ccccEEEEEeeCCCCcEEEEEEcCC----------CcEEEEECC-CCceeEEeecCC
Q 001352          420 IVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGDD----------KTIKVWDAV-TGSRTYSFEGHG  486 (1093)
Q Consensus       420 ~i~iwd~~~~~~~~~~~~~~-~-h~~~v~~~~~s~d~~~l~l~s~~~d----------~~i~vwd~~-~~~~~~~~~~h~  486 (1093)
                       +.+++.+++.......... + -..+-+.+...|+|.  +.+ +...          ..-.||-+. .+..++.+..+-
T Consensus        87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~  162 (307)
T COG3386          87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL  162 (307)
T ss_pred             -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcCCCCEEEeecCcE
Confidence             7788876665422222211 2 124567888999998  333 3322          112344444 566666666666


Q ss_pred             CCeEEeeecccCCccEEEEE-ecCCeEEEEEcCC-----CCc--eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352          487 APVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDS-----LGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  558 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~-----~~~--~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i  558 (1093)
                      ..-+.++|+|  |++.++.+ +..+.|..|++..     ...  ........+..-.++...+|.+-+++...   .+.|
T Consensus       163 ~~~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v  237 (307)
T COG3386         163 TIPNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRV  237 (307)
T ss_pred             EecCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceE
Confidence            6678889965  55455554 5558888887763     111  12233344556678888889887644321   2369


Q ss_pred             EEEeCCCCeeeeeeecccccCCCeEEEEEc-CCCCEEEEEe
Q 001352          559 VEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG  598 (1093)
Q Consensus       559 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~~  598 (1093)
                      ..|+.. |+++..+....   ..+.+++|. |+.+.|++.+
T Consensus       238 ~~~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         238 VRFNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             EEECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEe
Confidence            999988 99988888775   466666664 4556665544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.46  E-value=0.11  Score=55.56  Aligned_cols=229  Identities=14%  Similarity=0.069  Sum_probs=129.5

Q ss_pred             CCceEEEEEccCCcEEEEecC-CCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEE
Q 001352          346 VQHTLLLVGTNVGDTGLWDVN-SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY  424 (1093)
Q Consensus       346 dg~~llasg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iw  424 (1093)
                      .++ .|+.|+.+| +.+++.. .......                     .+...|..+...|+-+.|++-+ |+.+.++
T Consensus         6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i---------------------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~   61 (275)
T PF00780_consen    6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRI---------------------LKLSSITQLSVLPELNLLLVLS-DGQLYVY   61 (275)
T ss_pred             CCC-EEEEEECCC-EEEEEecCCccceeE---------------------eecceEEEEEEecccCEEEEEc-CCccEEE
Confidence            344 478888888 9999983 2222211                     1333499999999888877765 4899999


Q ss_pred             EccCCCcccceE-----------EeccccccEEEEE--eeCCCCcEEEEEEcCCCcEEEEECCCC-----ceeEEeecCC
Q 001352          425 AYHGGSDARQQL-----------EIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHG  486 (1093)
Q Consensus       425 d~~~~~~~~~~~-----------~~~~h~~~v~~~~--~s~d~~~l~l~s~~~d~~i~vwd~~~~-----~~~~~~~~h~  486 (1093)
                      ++..-.......           ........+...+  -...+.. .|+.+ ..++|.+|.+...     +..+++. -.
T Consensus        62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp  138 (275)
T PF00780_consen   62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LP  138 (275)
T ss_pred             EchhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEE-ECCEEEEEEEECCcccccceeEEEE-cC
Confidence            987644332110           0011223444444  1123332 34444 4558888877653     3455554 45


Q ss_pred             CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-----------ceEEEEEccCCCEEEEEecCCCCc
Q 001352          487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-----------GCTRMAYSANGRRLFSCGTSKEGE  555 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-----------~v~~~~~s~d~~~l~~~~~~~~~~  555 (1093)
                      ..+.+++|.    +..++.|..+ ...+.|+.++.....+.....           ....+.--+++.+|++..      
T Consensus       139 ~~~~~i~~~----~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~------  207 (275)
T PF00780_consen  139 DPPSSIAFL----GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYD------  207 (275)
T ss_pred             CCcEEEEEe----CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEec------
Confidence            778888885    2356666644 477788886555443322111           112222234456665532      


Q ss_pred             eeEEEEeCCCCeeee--eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 001352          556 SFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  620 (1093)
Q Consensus       556 ~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  620 (1093)
                      . +-++=-..|+..+  .+.-    ...+.++++.  ..++++.+. +.|.||++.++++++.+...
T Consensus       208 ~-~g~fv~~~G~~~r~~~i~W----~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  208 N-IGVFVNKNGEPSRKSTIQW----SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             c-eEEEEcCCCCcCcccEEEc----CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence            1 3333233454443  1111    1345556663  357777666 45999999999999998754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.43  E-value=0.11  Score=55.38  Aligned_cols=231  Identities=11%  Similarity=0.125  Sum_probs=131.6

Q ss_pred             CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe----
Q 001352          407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF----  482 (1093)
Q Consensus       407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~----  482 (1093)
                      ..++.|+.|+.+| +.+++.........   + .+...|..+...++-+  .++.-+ |+.+.++++..-.....-    
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence            3588999999999 99999933222221   1 2333499999999887  444444 599999998754433311    


Q ss_pred             ----------ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC-----CceEEecCCCCceEEEEEccCCCEEEE
Q 001352          483 ----------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-----GARVDYDAPGLGCTRMAYSANGRRLFS  547 (1093)
Q Consensus       483 ----------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~s~d~~~l~~  547 (1093)
                                ......+...+......+...+.......|.+|.+...     .....+..+ ..+..++|.  ++.++.
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v  153 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV  153 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence                      01223344444112233344555555669999888763     223333333 567888888  556666


Q ss_pred             EecCCCCceeEEEEeCCCCeeeeeeecccc---------cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--E
Q 001352          548 CGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T  616 (1093)
Q Consensus       548 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~  616 (1093)
                      +..     ....+.|+.++.....+.....         ...++..+.. +++.++++-  +..-.+.|. .|+...  .
T Consensus       154 ~~~-----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~  224 (275)
T PF00780_consen  154 GTS-----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST  224 (275)
T ss_pred             EeC-----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence            653     2378889887766544422110         0123333333 345566553  222233343 444333  2


Q ss_pred             EecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeeccc
Q 001352          617 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV  663 (1093)
Q Consensus       617 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  663 (1093)
                      +.-..   ....+++.  ..++++.+. +.|.||++.+++.++.+..
T Consensus       225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence            32221   24556664  447766665 5699999999988887764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.37  E-value=7.3e-05  Score=81.62  Aligned_cols=184  Identities=14%  Similarity=0.141  Sum_probs=119.9

Q ss_pred             CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce--EEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeC
Q 001352          487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNE  563 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~  563 (1093)
                      ..+.++++....+...++.|..+|.|.+-.++.....  .....+...+++++|++ |.+.||++-.....+..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            3455555554555567888999999999877654433  34455666899999988 56777777554456778999999


Q ss_pred             CCC--eeee--eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEecCCCCCCCceEEEec-CCCE
Q 001352          564 SEG--AIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNK-NGTL  637 (1093)
Q Consensus       564 ~~~--~~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~-~~~~  637 (1093)
                      .++  .+..  .+.+.  ......+++|..+.+.+++|.....+.++|++. ......+.    +..+..+..+| .+.+
T Consensus       137 ~s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY  210 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNY  210 (783)
T ss_pred             ccccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCc
Confidence            887  2221  12221  124556888888888899999999999999872 22222221    12356778888 7777


Q ss_pred             EEEEECCCeEEEEEcC-C-Cceeeecccc----cccceeeeecCCC
Q 001352          638 LAVIANENRIKILETP-E-SNSVDAAGVL----SDNLRKLSVNPIS  677 (1093)
Q Consensus       638 l~~~~~dg~i~iw~~~-~-~~~~~~~~~~----~~~i~~~~~~~~~  677 (1093)
                      +++-. ||.|.+||.. . ..++..+...    ...+..++++|..
T Consensus       211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr  255 (783)
T KOG1008|consen  211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR  255 (783)
T ss_pred             eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence            77665 8999999942 2 1222222222    2247788888754

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.33  E-value=0.71  Score=55.84  Aligned_cols=206  Identities=13%  Similarity=0.141  Sum_probs=119.2

Q ss_pred             EEEEEcCCCcEEEEECCCCceeEEeecCCCC--------eEEeeecc--------------cCCccEEEEEecCCeEEEE
Q 001352          458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHA--------------KENIHFIFSISVDGKIKAW  515 (1093)
Q Consensus       458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~--------v~~~~~~~--------------~~~~~~l~s~~~dg~i~vw  515 (1093)
                      .++.++.++.|.-.|..+|+.+-++......        .+.+++..              ...+..++.++.|+.+.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            4666667777888888888877666432110        11222211              1233478889999999999


Q ss_pred             EcCCCCceEEecCCCC------------ceEEEEEcc--CCCEEEEEecCCC------CceeEEEEeCCCCeeeeeeecc
Q 001352          516 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL  575 (1093)
Q Consensus       516 d~~~~~~~~~~~~~~~------------~v~~~~~s~--d~~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~  575 (1093)
                      |.++++....+.....            ....+.-+|  .+..+++++...+      ..+.|+-+|.++|+.+-.+..-
T Consensus       276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g  355 (764)
T TIGR03074       276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG  355 (764)
T ss_pred             ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence            9999888766533211            000111122  1334555543222      2678999999999987665421


Q ss_pred             cc--------------cCCCe-EEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCceEEEEecCCC
Q 001352          576 QL--------------QHNSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG  622 (1093)
Q Consensus       576 ~~--------------~~~~v-~~v~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~  622 (1093)
                      ..              ....+ ...++.++...++.+.                  ..+.|.-.|.++|+..-.++...+
T Consensus       356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h  435 (764)
T TIGR03074       356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH  435 (764)
T ss_pred             CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence            00              00011 2345555555554422                  235577788889988877654221


Q ss_pred             C-------CCCceEEEec-CCC---EEEEEECCCeEEEEEcCCCceeeeccc
Q 001352          623 L-------PENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAGV  663 (1093)
Q Consensus       623 ~-------~~v~~v~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~  663 (1093)
                      .       ....-+.+.- +|+   .++.++.+|.+.++|..+++.+...+.
T Consensus       436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e  487 (764)
T TIGR03074       436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE  487 (764)
T ss_pred             ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence            1       0111122332 553   788999999999999999988765543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.31  E-value=9.3e-05  Score=80.85  Aligned_cols=204  Identities=12%  Similarity=0.168  Sum_probs=127.6

Q ss_pred             CCCCceeeeecCCCc-eEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-CCCE
Q 001352          334 GSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSL  411 (1093)
Q Consensus       334 h~~~V~~~~~spdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-dg~~  411 (1093)
                      .+..+.|+++.-+.+ -++++|..+|.|-+-.+....--                 ...+..+|....++++|++ |...
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~  117 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH  117 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence            344788888765443 58999999999998877543211                 0112556888999999998 6778


Q ss_pred             EEEEE----cCCEEEEEEccCCC--cccceEEec-cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc-eeEEee
Q 001352          412 LGVAY----SKHIVQLYAYHGGS--DARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFE  483 (1093)
Q Consensus       412 las~~----~d~~i~iwd~~~~~--~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~  483 (1093)
                      ||+|-    .|..+.|||+.++-  ..... .+. +-.....+++|..|.+  ++.+|.....+.++|++... ....+ 
T Consensus       118 LAagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv-  193 (783)
T KOG1008|consen  118 LAAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV-  193 (783)
T ss_pred             HHhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh-
Confidence            88773    35579999999872  11111 122 2344566899998877  78888888899999976321 12222 


Q ss_pred             cCCCCeEEeeecccCCccEEEEEecCCeEEEEE-cCCCCceEEecC-----CCCceEEEEEccCCC-EEEEEecCCCCce
Q 001352          484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL-YDSLGARVDYDA-----PGLGCTRMAYSANGR-RLFSCGTSKEGES  556 (1093)
Q Consensus       484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~~~-----~~~~v~~~~~s~d~~-~l~~~~~~~~~~~  556 (1093)
                       .+..+..+.+.|- .+.++++-. ||.|.+|| ...-+.......     ....+..++|.|-.. .+++...   ..+
T Consensus       194 -nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~  267 (783)
T KOG1008|consen  194 -NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSI  267 (783)
T ss_pred             -hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---Ccc
Confidence             2223444444442 223665555 99999999 433332221111     122588999999654 3444433   256


Q ss_pred             eEEEEeCC
Q 001352          557 FLVEWNES  564 (1093)
Q Consensus       557 ~i~iwd~~  564 (1093)
                      +|+++|+.
T Consensus       268 tIrlydi~  275 (783)
T KOG1008|consen  268 TIRLYDIC  275 (783)
T ss_pred             eEEEeccc
Confidence            78888875

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.0018  Score=67.55  Aligned_cols=107  Identities=15%  Similarity=0.266  Sum_probs=86.2

Q ss_pred             HHHHHHHHhhhhcChHHHHHHHHHhcCCCh----------hHHHHHHHhcCcCHHHHHHHhccCC-CcCCccccchhhhH
Q 001352            7 DLVFLILQFLNEEGFTESAHMLERESRFYF----------DMKFFEDMILDGKWEDVEQYLSSFT-KVDDNRYSTKIYFE   75 (1093)
Q Consensus         7 ~~~~li~q~L~~~g~~~s~~~L~~Esg~~~----------~~~~~~~~i~~G~w~~~~~~l~~~~-~~~~~~~~~~~~~~   75 (1093)
                      .+..+|..++...|+.+.+..|.+|+|...          ++.++-++|..||-.-|++.+..-. .+.+.  ...+.|.
T Consensus       118 ~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~~  195 (394)
T KOG2817|consen  118 VLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEFK  195 (394)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHHH
Confidence            357889999999999999999999999864          2788889999999999999987631 12221  1237899


Q ss_pred             HHhhhhhhhccCCCHH--HHHHHHHhhccccCCCCHHHHHHH
Q 001352           76 IRKQNFFEALDGHDIA--KALNILKKDLKDFAPGNEELFKEL  115 (1093)
Q Consensus        76 i~~~~~lEll~~~~~~--~A~~~l~~~l~~~~~~~~~~~~~l  115 (1093)
                      |..+.|++++..|...  +|++..|+.++|+........+.|
T Consensus       196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQkl  237 (394)
T KOG2817|consen  196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKL  237 (394)
T ss_pred             HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHH
Confidence            9999999999988877  999999999999976554444433

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.23  E-value=0.017  Score=68.37  Aligned_cols=149  Identities=12%  Similarity=0.118  Sum_probs=101.6

Q ss_pred             CCCEEEEE-eCCCeEEEEEcCCcceeeecccccCC-eEEEEEeC-----CCCEEEEEeCCCcEEEEeCCCCceeeeeeee
Q 001352          856 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSD-----ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ  928 (1093)
Q Consensus       856 d~~~lasg-~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~s~-----dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  928 (1093)
                      +..+|... .....|+-.|+..|+.+..+..|... |..++-..     +...-..|-.+..+..||..-..   ..++.
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~v~  568 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKLVD  568 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC---Cceee
Confidence            44555443 34578999999999999999887654 55443221     11223445567779999987532   11222


Q ss_pred             cCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001352          929 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1008 (1093)
Q Consensus       929 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~ 1008 (1093)
                      ............++++-+.+|.+.+.+.+|.|++||- .|..-.+.+++-+.+|..|..+.||++|++.+ +..+.++++
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            1111112223578888888998887789999999994 45555666777789999999999999988554 678888886


Q ss_pred             C
Q 001352         1009 S 1009 (1093)
Q Consensus      1009 ~ 1009 (1093)
                      .
T Consensus       647 ~  647 (794)
T PF08553_consen  647 L  647 (794)
T ss_pred             e
Confidence            3

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.23  E-value=0.11  Score=55.20  Aligned_cols=214  Identities=11%  Similarity=0.040  Sum_probs=126.3

Q ss_pred             EeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001352          449 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA  528 (1093)
Q Consensus       449 ~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  528 (1093)
                      .|.++... ++.+--..+.|.-||..+|+.. .+. +.+.+.++... + ++..|+++...  +.+++.+.......+..
T Consensus        31 ~w~~~~~~-L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~-d-~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          31 VWDPDRGA-LLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALI-D-AGGRLIACEHG--VRLLDPDTGGKITLLAE  103 (307)
T ss_pred             cCcCCCCE-EEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceee-c-CCCeEEEEccc--cEEEeccCCceeEEecc
Confidence            46666664 4555556778888988766432 222 22223333321 2 22344444332  34455554444222211


Q ss_pred             -----CCCceEEEEEccCCCEEEEEec-----CC--CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE
Q 001352          529 -----PGLGCTRMAYSANGRRLFSCGT-----SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA  596 (1093)
Q Consensus       529 -----~~~~v~~~~~s~d~~~l~~~~~-----~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  596 (1093)
                           .....+...+.|+|.+.+....     ..  ...+.|+.+|. .+..++.+..+-   ..-+.++||||++.++.
T Consensus       104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~---~~~NGla~SpDg~tly~  179 (307)
T COG3386         104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL---TIPNGLAFSPDGKTLYV  179 (307)
T ss_pred             ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE---EecCceEECCCCCEEEE
Confidence                 1234567888999988776543     11  22345666665 466666665543   45678999999988777


Q ss_pred             Ee-CCCcEEEEECCC--Cce---EEEEecCCCCCCCceEEEecCCCEEEEEECCC-eEEEEEcCCCceeeecccccccce
Q 001352          597 AG-DDHVIKIWDMNK--VQL---LTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLR  669 (1093)
Q Consensus       597 ~~-~dg~i~iwd~~~--~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~i~  669 (1093)
                      +. ..+.|.-|++..  +..   .............-.++...+|.+.+++..+| .|.+|+.. ++.+.....+...++
T Consensus       180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t  258 (307)
T COG3386         180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT  258 (307)
T ss_pred             EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence            65 457788887752  211   11121111223345788889998886555554 89999998 888888888777777


Q ss_pred             eeeec
Q 001352          670 KLSVN  674 (1093)
Q Consensus       670 ~~~~~  674 (1093)
                      +++|.
T Consensus       259 ~~~Fg  263 (307)
T COG3386         259 NPAFG  263 (307)
T ss_pred             cceEe
Confidence            77776

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.20  E-value=0.11  Score=56.91  Aligned_cols=178  Identities=11%  Similarity=0.021  Sum_probs=105.3

Q ss_pred             CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC----CCEEEEEEc---------C-CEEEE
Q 001352          358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLLGVAYS---------K-HIVQL  423 (1093)
Q Consensus       358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d----g~~las~~~---------d-~~i~i  423 (1093)
                      ..|++.|..+.+.+..+.++-               ..+-..+..+.|..+    ..+|++|+.         . |.|.+
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~---------------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v   66 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEP---------------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV   66 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEET---------------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCC---------------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence            358899998888887655431               111123334445543    578888753         2 88999


Q ss_pred             EEccCC----CcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc-eeEEee-cCCCCeEEeeeccc
Q 001352          424 YAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFE-GHGAPVYSLCPHAK  497 (1093)
Q Consensus       424 wd~~~~----~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~-~h~~~v~~~~~~~~  497 (1093)
                      +++...    ..++.... ....++|++++-- .+.   ++.+. .+.|.+|++...+ ....-. .....+.++...  
T Consensus        67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~---lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--  138 (321)
T PF03178_consen   67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR---LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--  138 (321)
T ss_dssp             EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE---EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred             EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE---EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence            999984    22333222 2457889998876 333   33333 4789999998888 433222 123356666542  


Q ss_pred             CCccEEEEEecCCeEEEEEcCCCCc-eEE--ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352          498 ENIHFIFSISVDGKIKAWLYDSLGA-RVD--YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  564 (1093)
Q Consensus       498 ~~~~~l~s~~~dg~i~vwd~~~~~~-~~~--~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~  564 (1093)
                        +.+++.|.....+.++.++.... ...  .......++++.|-++++.++++..    .+.+.++...
T Consensus       139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~  202 (321)
T PF03178_consen  139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYN  202 (321)
T ss_dssp             --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-
T ss_pred             --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEEC
Confidence              34899999999988886665333 222  2233456888888877776666543    5557666544

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.19  E-value=0.13  Score=56.61  Aligned_cols=83  Identities=8%  Similarity=0.056  Sum_probs=56.8

Q ss_pred             CCCCeeEEEEccCCCEEEEEeC-CeEEEEEccCceeEEEECCCCCCeEE-EEEcCCC----------------CC-EEEE
Q 001352          802 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATS-LAFNPHD----------------NN-VIAI  862 (1093)
Q Consensus       802 ~~~~v~~l~~s~dg~~la~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d----------------~~-~las  862 (1093)
                      ....+.+++.+|++++.|+.++ |.|.++|+.++..++.+++..+.-.. +......                .. +++-
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            4566889999999998888765 99999999999888877765432111 1111001                11 2334


Q ss_pred             EeCCCeEEEEEcCCcceeeecc
Q 001352          863 GMDDSTILIYNARSSEVISKLE  884 (1093)
Q Consensus       863 g~~dg~i~iwd~~~~~~~~~l~  884 (1093)
                      +-.-|.|.||.+++|..+..+.
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEEE
Confidence            6678899999999887766554

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.18  E-value=0.023  Score=62.13  Aligned_cols=214  Identities=11%  Similarity=0.120  Sum_probs=115.6

Q ss_pred             cccCCCCCCceeeccCCCCCCCCCeeEEEEccC----CCEEEEEe----------C-CeEEEEEccCc----eeEEEE--
Q 001352          782 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN----DAYLFSAS----------G-GVISLYIVMTF----KTILTI--  840 (1093)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d----g~~la~~~----------d-g~i~iwd~~~~----~~~~~~--  840 (1093)
                      ++.|+.+...+....+...++...+..+.+..+    ..++++|.          . |.|.++++...    ..+..+  
T Consensus         5 ~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~   84 (321)
T PF03178_consen    5 RLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS   84 (321)
T ss_dssp             EEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE
T ss_pred             EEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE
Confidence            334444444455555542122222333344433    57888775          1 77999999884    122211  


Q ss_pred             CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc-eeeeccc-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352          841 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       841 ~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~-~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~  918 (1093)
                      ....++|++++--  +++ |+++. .+.|.+|++...+ ....-.- ....++++...  +++++.|.....+.++.++.
T Consensus        85 ~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   85 TEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEET
T ss_pred             EeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEc
Confidence            2346788888876  344 44343 4789999998877 4332221 22245555544  66999998888888886654


Q ss_pred             CceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCC-------cc-eeeeeecCC-CCCEEEE---
Q 001352          919 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE-------LT-CLKQWFPIS-SVPISQA---  985 (1093)
Q Consensus       919 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~-------~~-~~~~~~~~h-~~~v~~~---  985 (1093)
                      ... ....+..-...    ..++++.|-+|++.+++ -.+|.+.++....       +. .+.....-| ...|+++   
T Consensus       159 ~~~-~l~~va~d~~~----~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~  233 (321)
T PF03178_consen  159 ENN-KLILVARDYQP----RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG  233 (321)
T ss_dssp             TTE--EEEEEEESS-----BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred             cCC-EEEEEEecCCC----ccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence            211 11122221111    25889999877765555 4678899888762       22 222212222 5677777   


Q ss_pred             EEcc--CCC------EEEEEeCCCcEEEE
Q 001352          986 TFSC--DCR------MVFTSFVDGTLSIH 1006 (1093)
Q Consensus       986 ~fs~--dg~------~l~t~~~dg~v~vw 1006 (1093)
                      .+.|  .+.      .++.++.+|.|.+.
T Consensus       234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  234 SLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EeeecCCCCcccccceEEEEecCCEEEEE
Confidence            4445  222      47778899998843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.14  E-value=0.22  Score=54.95  Aligned_cols=84  Identities=12%  Similarity=0.247  Sum_probs=59.5

Q ss_pred             CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC-----------------CCE
Q 001352          531 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----------------KDQ  593 (1093)
Q Consensus       531 ~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~-----------------~~~  593 (1093)
                      ..+.+++.+|++++.++.    |.-|+|.++|+.++..++.++|..  +..+.-+.....                 ..+
T Consensus       308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEE
Confidence            357889999998877775    336779999999999999999876  222221211111                 112


Q ss_pred             EE-EEeCCCcEEEEECCCCceEEEEecC
Q 001352          594 IL-AAGDDHVIKIWDMNKVQLLTTIDAG  620 (1093)
Q Consensus       594 l~-~~~~dg~i~iwd~~~~~~~~~~~~~  620 (1093)
                      |+ -+-.-|.|.||.+++|..+..+...
T Consensus       382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence            33 3678899999999999988887654

>PRK10115 protease 2; Provisional

Probab=97.00  E-value=1.2  Score=53.86  Aligned_cols=244  Identities=9%  Similarity=0.014  Sum_probs=121.4

Q ss_pred             CceeeeecCCCceEEEEEccCC----cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  412 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l  412 (1093)
                      .+..+.+||||++|+.+.+.+|    .|++-|+.+|..+..                     .....-..++|++|++.|
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~---------------------~i~~~~~~~~w~~D~~~~  186 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE---------------------LLDNVEPSFVWANDSWTF  186 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc---------------------cccCcceEEEEeeCCCEE
Confidence            5778899999997555544444    488999988864421                     011112469999999887


Q ss_pred             EEEEcC------CEEEEEEccCCCcccceEEeccccccEE-EEEeeCCCCcEEEEEEc-CCCcEEEEECC--CCceeEEe
Q 001352          413 GVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSF  482 (1093)
Q Consensus       413 as~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~d~~~l~l~s~~-~d~~i~vwd~~--~~~~~~~~  482 (1093)
                      +....+      ..|..+++.++..-... .+........ .+..+.|++.+++-+.+ .++.+.+++..  ++.....+
T Consensus       187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l-v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~  265 (686)
T PRK10115        187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL-VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL  265 (686)
T ss_pred             EEEEecCCCCCCCEEEEEECCCChhHCeE-EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence            776442      36788888887311111 2332223333 33445588853322222 34578888843  34432222


Q ss_pred             ecCCCCeEEeeecccCCccEEEEEec-CC--eEEEEEcCC-CCceEEecC-CCCceEEEEEccCCCEEEEEecCCCCcee
Q 001352          483 EGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDS-LGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF  557 (1093)
Q Consensus       483 ~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~-~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~  557 (1093)
                      .........+. + ..+ .+.+.... ..  .|...++.. .+....+.. ....+..+.+.  ++.|+.... .++...
T Consensus       266 ~~~~~~~~~~~-~-~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~~  339 (686)
T PRK10115        266 PRRKDHEYSLD-H-YQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLTS  339 (686)
T ss_pred             ECCCCCEEEEE-e-CCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEEE
Confidence            22222222222 1 112 22222222 12  343344442 222223333 23367777776  445554433 234666


Q ss_pred             EEEEeCCCCeeeeeee-cccccCCCeEEEEEc--CCCC-EEEEEe---CCCcEEEEECCCCc
Q 001352          558 LVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ  612 (1093)
Q Consensus       558 i~iwd~~~~~~~~~~~-~~~~~~~~v~~v~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~  612 (1093)
                      +.+++..++.. ..+. ...   ..+..+.++  +++. .+++.+   .-+.++.+|..+++
T Consensus       340 l~~~~~~~~~~-~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        340 LRQINRKTREV-IGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             EEEEcCCCCce-EEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            78888654433 3322 111   122333344  3434 333322   45778888988765

>PRK10115 protease 2; Provisional

Probab=97.00  E-value=0.91  Score=54.95  Aligned_cols=245  Identities=9%  Similarity=0.032  Sum_probs=122.4

Q ss_pred             CCeEEEEECCCCCEEEEEEcC-----CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-----Cc
Q 001352          398 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT  467 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~  467 (1093)
                      -.+..+.|||||++||.+.+.     ..|++-|+.+|+.+..  .+.+-   -..++|++|++.+ +++...+     ..
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~~---~~~~~w~~D~~~~-~y~~~~~~~~~~~~  200 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDNV---EPSFVWANDSWTF-YYVRKHPVTLLPYQ  200 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccCc---ceEEEEeeCCCEE-EEEEecCCCCCCCE
Confidence            346678899999999987432     2589999998864321  12221   1469999999863 3333222     36


Q ss_pred             EEEEECCCC--ceeEEeecCCCCeEEeeecccCCccEEEEEec---CCeEEEEEcCC--CCceEEecCCCCceEEEEEcc
Q 001352          468 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA  540 (1093)
Q Consensus       468 i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~s~  540 (1093)
                      |..+++.++  +....+........ +......++.+++..+.   ++.+.+++...  ................+. . 
T Consensus       201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-  277 (686)
T PRK10115        201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H-  277 (686)
T ss_pred             EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e-
Confidence            888899888  33334443333333 22222445555554443   34688888533  222222222222222222 2 


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCC-CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEe
Q 001352          541 NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTID  618 (1093)
Q Consensus       541 d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~  618 (1093)
                      .+..+...+..+.....|...++. .++. ..+..+. ....+..+.+.. +..+++...+|.-+++-+.. +..+..+.
T Consensus       278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~-~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~  354 (686)
T PRK10115        278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPR-ENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIA  354 (686)
T ss_pred             CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCC-CCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence            234444444333334556666665 2322 2232221 123577777763 34445566677655554332 22334433


Q ss_pred             cCCCCCCCceEEEe--cCCC-EEEEEEC---CCeEEEEEcCCC
Q 001352          619 AGGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPES  655 (1093)
Q Consensus       619 ~~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iw~~~~~  655 (1093)
                      .... ..+..+.++  +++. +++..+.   -+.+..+|..++
T Consensus       355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence            2111 112222333  3333 3333332   367777777665

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.0036  Score=69.08  Aligned_cols=94  Identities=20%  Similarity=0.380  Sum_probs=73.2

Q ss_pred             CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE-EEEECCCCCEEEE
Q 001352          336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGV  414 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~s~dg~~las  414 (1093)
                      ..|..+.|+|.-. |+|.+..+|.|.+..++ .+.+.+                   +.-|+..++ +++|.|||+.||+
T Consensus        21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwt-------------------ip~p~~~v~~sL~W~~DGkllaV   79 (665)
T KOG4640|consen   21 INIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWT-------------------IPIPGENVTASLCWRPDGKLLAV   79 (665)
T ss_pred             cceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEe-------------------ccCCCCccceeeeecCCCCEEEE
Confidence            3889999999998 79999999999999887 444433                   333666777 9999999999999


Q ss_pred             EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeC
Q 001352          415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA  452 (1093)
Q Consensus       415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~  452 (1093)
                      |-.||+|++-|+++|..+...  ...-...|.++-|++
T Consensus        80 g~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   80 GFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR  115 (665)
T ss_pred             EecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence            999999999999998765431  122345677777763

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.91  E-value=0.71  Score=48.85  Aligned_cols=158  Identities=11%  Similarity=0.027  Sum_probs=82.8

Q ss_pred             CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001352          841 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  920 (1093)
Q Consensus       841 ~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~  920 (1093)
                      ......+..+..++ |+++++++..-....-||--...-...-..-+..|.+|.|+||+.+.+. ...|.|+.=+.....
T Consensus       141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDG  218 (302)
T ss_dssp             -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEE
T ss_pred             cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCc
Confidence            34456788889999 8999988765555566775422111112224678999999999877664 488888887722211


Q ss_pred             eeeeee-eecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecC--CCCCEEEEEEccCCCEEEEE
Q 001352          921 IQTCRS-LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTS  997 (1093)
Q Consensus       921 ~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~~~fs~dg~~l~t~  997 (1093)
                      ..-... .......    -.+..++|.+++...|++..|.+. .....|+.-.....+  -......+.|..+.+-++. 
T Consensus       219 ~~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-  292 (302)
T PF14870_consen  219 ETWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-  292 (302)
T ss_dssp             EEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred             cccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEE-
Confidence            000011 1111111    247899999999999988888554 455556554443322  2567889999877665654 


Q ss_pred             eCCCcEEEE
Q 001352          998 FVDGTLSIH 1006 (1093)
Q Consensus       998 ~~dg~v~vw 1006 (1093)
                      +.+|.+.=|
T Consensus       293 G~~G~ll~~  301 (302)
T PF14870_consen  293 GQDGVLLRY  301 (302)
T ss_dssp             -STTEEEEE
T ss_pred             CCCcEEEEe
Confidence            578877654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.87  E-value=0.39  Score=50.11  Aligned_cols=203  Identities=18%  Similarity=0.159  Sum_probs=112.8

Q ss_pred             CeEEEEEcCCCCCEEEEEe---CCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEe-CCCCce
Q 001352          846 TATSLAFNPHDNNVIAIGM---DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWGI  921 (1093)
Q Consensus       846 ~i~~l~~s~~d~~~lasg~---~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd-~~~~~~  921 (1093)
                      .+.+.++++ +++.+|...   ....++++.... .....+.+  ..++...|++++...+....+...+++. ...+..
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCC-cceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            688999999 777666554   233555554432 22222233  3688889999988777777677777774 233221


Q ss_pred             eeeeeeecCCCcccCCCCceEEEEccCCCEEEEEe----CCeEEEEEcC---Cc--cee---eeeecCCCCCEEEEEEcc
Q 001352          922 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCL---KQWFPISSVPISQATFSC  989 (1093)
Q Consensus       922 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d~~i~vwd~~---~~--~~~---~~~~~~h~~~v~~~~fs~  989 (1093)
                      .. ..+......    ..|+.+++||||..+|...    ++.|.|--+.   .+  ..+   ..........+..+.|.+
T Consensus       101 ~~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen  101 EP-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             ee-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence            11 112222111    1599999999999999843    5677776543   23  111   111112256889999999


Q ss_pred             CCCEEEEEeCCCc-EEE-EEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCC
Q 001352          990 DCRMVFTSFVDGT-LSI-HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1067 (1093)
Q Consensus       990 dg~~l~t~~~dg~-v~v-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~ 1067 (1093)
                      ++++++.+...+. +.. ..+..+..- .+      +..  ......+.++-++   .. +.+.+++.+.-   ...+..
T Consensus       176 ~~~L~V~~~~~~~~~~~~v~~dG~~~~-~l------~~~--~~~~~v~a~~~~~---~~-~~~t~~~~~~~---~~~~~~  239 (253)
T PF10647_consen  176 DSTLVVLGRSAGGPVVRLVSVDGGPST-PL------PSV--NLGVPVVAVAASP---ST-VYVTDDGGVLQ---SRSGAS  239 (253)
T ss_pred             CCEEEEEeCCCCCceeEEEEccCCccc-cc------CCC--CCCcceEEeeCCC---cE-EEEECCCcEEE---CCCCCc
Confidence            9998776665543 333 333322211 11      111  1223334455444   23 55555555443   556667


Q ss_pred             cccCCC
Q 001352         1068 WAVLPP 1073 (1093)
Q Consensus      1068 ~~~~~~ 1073 (1093)
                      |...+-
T Consensus       240 W~~v~~  245 (253)
T PF10647_consen  240 WREVPG  245 (253)
T ss_pred             ceEccC
Confidence            766543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>smart00320 WD40 WD40 repeats

Probab=96.83  E-value=0.0024  Score=43.55  Aligned_cols=39  Identities=36%  Similarity=0.622  Sum_probs=34.2

Q ss_pred             cceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q 001352          877 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  915 (1093)
Q Consensus       877 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd  915 (1093)
                      ++....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345566778899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.72  E-value=0.17  Score=52.73  Aligned_cols=147  Identities=18%  Similarity=0.167  Sum_probs=91.8

Q ss_pred             CCeeEEEEccCCCEEEEEe--CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE-cCCccee
Q 001352          804 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI  880 (1093)
Q Consensus       804 ~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd-~~~~~~~  880 (1093)
                      ..+...++|+|++.+|...  ++.-.+|-...+....... ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence            3678899999999888776  5554444444444333332 233788889999 687777777677777764 3333321


Q ss_pred             -eec--ccccCCeEEEEEeCCCCEEEEEe---CCCcEEEEeCCCCcee----eeeeeecCCCcccCCCCceEEEEccCCC
Q 001352          881 -SKL--EGHSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQ----TCRSLQTPDGVMTLAPSETHIQFHKDQT  950 (1093)
Q Consensus       881 -~~l--~~h~~~V~~l~~s~dg~~l~s~s---~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~dg~  950 (1093)
                       ..+  ..-.+.|+.+.+||||..+|...   .++.|.+=-+......    ....+......   ...++.++|.+++.
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~~~  178 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDDST  178 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCCCE
Confidence             111  11222899999999999988766   3566777655432211    11111222111   13689999999999


Q ss_pred             EEEEE
Q 001352          951 RFLLV  955 (1093)
Q Consensus       951 ~l~~~  955 (1093)
                      +++.+
T Consensus       179 L~V~~  183 (253)
T PF10647_consen  179 LVVLG  183 (253)
T ss_pred             EEEEe
Confidence            88874

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.66  E-value=0.0083  Score=66.32  Aligned_cols=93  Identities=17%  Similarity=0.174  Sum_probs=75.5

Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeE-EEEEeCCCCEEEEEeCCCcEEEEeCCCCceee
Q 001352          845 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQT  923 (1093)
Q Consensus       845 ~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~-~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~  923 (1093)
                      ..+.-+.|+| .-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|-|||+.||.|-.||+|++-|+.++....
T Consensus        21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            4677889999 88999999999999999988 777888887777787 99999999999999999999999999976444


Q ss_pred             eeeeecCCCcccCCCCceEEEEc
Q 001352          924 CRSLQTPDGVMTLAPSETHIQFH  946 (1093)
Q Consensus       924 ~~~~~~~~~~~~~~~~v~~~~~s  946 (1093)
                      ....    ...   ..|..+-|+
T Consensus        99 ~~~~----s~e---~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLF----SVE---TDISKGIWD  114 (665)
T ss_pred             cccc----ccc---cchheeecc
Confidence            3211    111   246667776

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.62  E-value=0.049  Score=59.16  Aligned_cols=144  Identities=13%  Similarity=0.131  Sum_probs=96.3

Q ss_pred             CCCEEE-EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEE-----EEEcCCCcEEEEECCCC-c-ee
Q 001352          408 DGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV-----ITCGDDKTIKVWDAVTG-S-RT  479 (1093)
Q Consensus       408 dg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l-----~s~~~d~~i~vwd~~~~-~-~~  479 (1093)
                      +..+|. ++.....++=.|++.|+.+.   ++.-|.. |+-+.+.|+.+.--+     +.|-.|..|.-||.+-. . .+
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl  419 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL  419 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence            444443 44445568888999998776   4444555 788888887642111     23445888999997632 2 22


Q ss_pred             EEeecCC----CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001352          480 YSFEGHG----APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  555 (1093)
Q Consensus       480 ~~~~~h~----~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~  555 (1093)
                      ..-++|.    ....|.+-  ..+| ++++||.+|.||+||--.......+++-+.+|..+..+.||+++++.+     +
T Consensus       420 ~~~q~kqy~~k~nFsc~aT--T~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~  491 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFAT--TESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K  491 (644)
T ss_pred             eeeeccccccccccceeee--cCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence            2223332    22333332  4444 899999999999999755555667788888999999999999998765     5


Q ss_pred             eeEEEEeC
Q 001352          556 SFLVEWNE  563 (1093)
Q Consensus       556 ~~i~iwd~  563 (1093)
                      .++.+.++
T Consensus       492 tyLlLi~t  499 (644)
T KOG2395|consen  492 TYLLLIDT  499 (644)
T ss_pred             cEEEEEEE
Confidence            56766664

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.61  E-value=0.97  Score=46.10  Aligned_cols=188  Identities=9%  Similarity=0.102  Sum_probs=115.0

Q ss_pred             CCCeeEEEEccCCCEEEEEe-C--CeEEEEEccCceeEEEECCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352          803 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  878 (1093)
Q Consensus       803 ~~~v~~l~~s~dg~~la~~~-d--g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~  878 (1093)
                      ..-...+.|..+|.++-+.+ .  ..|+.+|+.+++......-.. ----.++..  ++++....-.++...+||..+-+
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK  121 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence            33456788888888887776 2  469999999998876654332 233445555  45566667789999999999998


Q ss_pred             eeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eC
Q 001352          879 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE  957 (1093)
Q Consensus       879 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d  957 (1093)
                      .+.++. ..+.=+.++  .|++.|+.+.....|.++|..+-+......+.. .+...  ..+.-+.+- +|...|=. ..
T Consensus       122 ~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-~g~pv--~~LNELE~i-~G~IyANVW~t  194 (264)
T PF05096_consen  122 KIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-NGRPV--SNLNELEYI-NGKIYANVWQT  194 (264)
T ss_dssp             EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE-TTEE-----EEEEEEE-TTEEEEEETTS
T ss_pred             EEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE-CCEEC--CCcEeEEEE-cCEEEEEeCCC
Confidence            888876 345567777  467777777667779999987755443222221 12111  245556665 55544444 55


Q ss_pred             CeEEEEEcCCcceeeeeecC-----------C---CCCEEEEEEccCCCEEEEEeC
Q 001352          958 THLAIYEAEELTCLKQWFPI-----------S---SVPISQATFSCDCRMVFTSFV  999 (1093)
Q Consensus       958 ~~i~vwd~~~~~~~~~~~~~-----------h---~~~v~~~~fs~dg~~l~t~~~  999 (1093)
                      ..|...|..+|+....+-..           +   ..-...+++.|++..|...|.
T Consensus       195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            67888899999877653110           1   345788999887666555543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK13684 Ycf48-like protein; Provisional

Probab=96.59  E-value=1.6  Score=47.84  Aligned_cols=157  Identities=10%  Similarity=0.023  Sum_probs=88.1

Q ss_pred             cCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcC
Q 001352          887 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE  966 (1093)
Q Consensus       887 ~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~  966 (1093)
                      .+.+.++.+.|++.++++ +..|.+.. ..+.+. .....+....  .   ..+..+.+.++++.++++..|.+.+=...
T Consensus       172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~-s~~~gg-~tW~~~~~~~--~---~~l~~i~~~~~g~~~~vg~~G~~~~~s~d  243 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAV-SSRGNFYS-TWEPGQ-TAWTPHQRNS--S---RRLQSMGFQPDGNLWMLARGGQIRFNDPD  243 (334)
T ss_pred             cceEEEEEECCCCeEEEE-eCCceEEE-EcCCCC-CeEEEeeCCC--c---ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence            456889999999866655 45564432 211111 1111222211  1   36889999999999888877776532344


Q ss_pred             CcceeeeeecC---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCC
Q 001352          967 ELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1043 (1093)
Q Consensus       967 ~~~~~~~~~~~---h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1043 (1093)
                      .|..-.....+   ....+.++.|.+++..++ ++.+|.|. ...+.|+.-.........+.     ..+  .+.|..  
T Consensus       244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~-----~~~--~~~~~~--  312 (334)
T PRK13684        244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPS-----NFY--KIVFLD--  312 (334)
T ss_pred             CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCc-----ceE--EEEEeC--
Confidence            55433321111   134578899999887666 45677554 55665554333321111111     122  344443  


Q ss_pred             CCEEEEEeCCCcEEEEecC
Q 001352         1044 PTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus      1044 ~~~l~~~~~dg~v~~w~~~ 1062 (1093)
                      ++...+++..|.|-.|+-.
T Consensus       313 ~~~~~~~G~~G~il~~~~~  331 (334)
T PRK13684        313 PEKGFVLGQRGVLLRYVGS  331 (334)
T ss_pred             CCceEEECCCceEEEecCC
Confidence            3456778888998888653

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.57  E-value=1.6  Score=47.80  Aligned_cols=113  Identities=23%  Similarity=0.287  Sum_probs=59.2

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC---CCEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLLG  413 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d---g~~la  413 (1093)
                      ..+.++|.|||+ ++++ ...|.|++++ ..+.....  +  -++        ..+..........++|+|+   ..+|.
T Consensus         3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~~--v--~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY   67 (331)
T PF07995_consen    3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKTP--V--ADL--------PEVFADGERGLLGIAFHPDFASNGYLY   67 (331)
T ss_dssp             SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECEE--E--EE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred             CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcce--e--ccc--------ccccccccCCcccceeccccCCCCEEE
Confidence            568999999997 4554 5689999999 55544110  0  000        0113345678899999995   33443


Q ss_pred             EE-EcC--------CEEEEEEccCCC-cc---cceE-Eecc---ccccEEEEEeeCCCCcEEEEEEcCCC
Q 001352          414 VA-YSK--------HIVQLYAYHGGS-DA---RQQL-EIDA---HVGNVNDLAFSAPCKQISVITCGDDK  466 (1093)
Q Consensus       414 s~-~~d--------~~i~iwd~~~~~-~~---~~~~-~~~~---h~~~v~~~~~s~d~~~l~l~s~~~d~  466 (1093)
                      +. +..        ..|.-|....+. .+   +.+. .+..   ....-..++|.|||.  ++++.+..+
T Consensus        68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~  135 (331)
T PF07995_consen   68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG  135 (331)
T ss_dssp             EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred             EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence            33 321        245555555441 11   1111 1111   233456799999996  555555443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.49  E-value=0.064  Score=63.62  Aligned_cols=145  Identities=12%  Similarity=0.115  Sum_probs=97.8

Q ss_pred             CcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC-eEEeeeccc---CCccEEEEEecCCeEEEEEcCCCCceEEe-c--
Q 001352          455 KQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP-VYSLCPHAK---ENIHFIFSISVDGKIKAWLYDSLGARVDY-D--  527 (1093)
Q Consensus       455 ~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~--  527 (1093)
                      +.++|........|+-.|+++|+.+..+..|... |..++....   -+..-.+.|-.++.+..||.+-....... .  
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3334455556678999999999999999887754 776653211   01234677778888999999875532211 1  


Q ss_pred             --CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 001352          528 --APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI  605 (1093)
Q Consensus       528 --~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~i  605 (1093)
                        .......|++-+.+|. ||+|+.    +|.|++||--..+....+.+..   .+|..+..+.||+++++.+. ..+.+
T Consensus       573 ~Y~~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~-tyLlL  643 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLG---DPIIGIDVTADGKWILATCK-TYLLL  643 (794)
T ss_pred             ccccCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCC---CCeeEEEecCCCcEEEEeec-ceEEE
Confidence              1233677888877775 556655    5559999954434444455544   89999999999999988775 45666


Q ss_pred             EEC
Q 001352          606 WDM  608 (1093)
Q Consensus       606 wd~  608 (1093)
                      ++.
T Consensus       644 i~t  646 (794)
T PF08553_consen  644 IDT  646 (794)
T ss_pred             EEE
Confidence            664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.48  E-value=0.045  Score=59.43  Aligned_cols=146  Identities=9%  Similarity=0.102  Sum_probs=101.7

Q ss_pred             EEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCE--E-----EEEeCCCcEEEEeCCCCceeeeeeeecCC
Q 001352          859 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI--L-----VSSGGDAQIFVWDVDGWGIQTCRSLQTPD  931 (1093)
Q Consensus       859 ~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~--l-----~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  931 (1093)
                      +|.++.....++--|+..|+.+..+.-|.. |.-+.+.|+.+.  |     +.|=.|..|+-||..-.....   +....
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k---l~~~q  423 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK---LAVVQ  423 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce---eeeee
Confidence            334455556788889999999998887766 788888887632  1     234457778889886432211   11111


Q ss_pred             Ccc-cCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001352          932 GVM-TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus       932 ~~~-~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
                      ++. .......|.+-..+|..++.+.+|.|++||- .+....+.+++-+.+|..+..+.||++|+.. .+..+.+-++.-
T Consensus       424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~~  501 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTLI  501 (644)
T ss_pred             ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEec
Confidence            211 1112356677777777777789999999998 6777777788889999999999999998844 467888877643

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.48  E-value=0.18  Score=59.77  Aligned_cols=99  Identities=19%  Similarity=0.236  Sum_probs=70.5

Q ss_pred             EEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCC
Q 001352          350 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG  429 (1093)
Q Consensus       350 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~  429 (1093)
                      +++.|+..|.|...|+.+.-.-.     .|             -..-.++|++++|+.||++++.|-.+|.|.+||+..+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~-----~~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~  162 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPL-----HQ-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA  162 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchh-----hc-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence            58888888999998886631100     00             1124579999999999999999999999999999998


Q ss_pred             CcccceEEecccccc---EEEEEeeCCCCcEEEEEEcCCCcEEEEEC
Q 001352          430 SDARQQLEIDAHVGN---VNDLAFSAPCKQISVITCGDDKTIKVWDA  473 (1093)
Q Consensus       430 ~~~~~~~~~~~h~~~---v~~~~~s~d~~~l~l~s~~~d~~i~vwd~  473 (1093)
                      +.++.   +..|..+   |..+.+..++.  .++++...|.  +|..
T Consensus       163 k~l~~---i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  163 KILKV---ITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cceee---eeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence            87764   3334443   33444555555  6888887776  5653

>PHA02713 hypothetical protein; Provisional

Probab=96.47  E-value=0.17  Score=59.61  Aligned_cols=197  Identities=10%  Similarity=0.020  Sum_probs=105.5

Q ss_pred             CCCEEEEEeCC------CeEEEEEcCCcce--eeecccccCCeEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCCcee
Q 001352          856 DNNVIAIGMDD------STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQ  922 (1093)
Q Consensus       856 d~~~lasg~~d------g~i~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg-----~i~iwd~~~~~~~  922 (1093)
                      ++.+.++|+.+      ..+..||..+.+-  +..+........  +..-+|+..+.||.++     .+..||..+++-.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~--~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS--LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee--EEEECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            66777888754      3578889877642  222221111122  2233678888888764     4788998875432


Q ss_pred             eeeeeecCCCcccCCCCceEEEEccCCCEEEEEe-C-----------------------CeEEEEEcCCcceeeeeecCC
Q 001352          923 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-E-----------------------THLAIYEAEELTCLKQWFPIS  978 (1093)
Q Consensus       923 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d-----------------------~~i~vwd~~~~~~~~~~~~~h  978 (1093)
                      .   +........   ..  .+..-+|++.++|+ +                       ..+..||..+.+-... .+-.
T Consensus       381 ~---~~~mp~~r~---~~--~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~  451 (557)
T PHA02713        381 M---LPDMPIALS---SY--GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFW  451 (557)
T ss_pred             E---CCCCCcccc---cc--cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec-CCCC
Confidence            2   211111110   11  12233666666642 2                       2477888877654322 1111


Q ss_pred             CCCEEEEEEccCCCEEEEEeCCC------cEEEEEcCC-CceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEe
Q 001352          979 SVPISQATFSCDCRMVFTSFVDG------TLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1051 (1093)
Q Consensus       979 ~~~v~~~~fs~dg~~l~t~~~dg------~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~ 1051 (1093)
                      ..+....+..-+|+..+.||.++      .|..||..+ .+... +   ..++..     .....++..  ++..+++|+
T Consensus       452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~-~---~~m~~~-----r~~~~~~~~--~~~iyv~Gg  520 (557)
T PHA02713        452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL-I---TTTESR-----LSALHTILH--DNTIMMLHC  520 (557)
T ss_pred             cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE-c---cccCcc-----cccceeEEE--CCEEEEEee
Confidence            11222222345677777787642      467788887 44331 1   112221     111223333  478999999


Q ss_pred             CCC--cEEEEecCCCCCCcccCCCccc
Q 001352         1052 TNG--EVYVIEPNEPGDTWAVLPPDEI 1076 (1093)
Q Consensus      1052 ~dg--~v~~w~~~~~~~~~~~~~~~~~ 1076 (1093)
                      .||  ++-.+|+.  ..+|...+|.-.
T Consensus       521 ~~~~~~~e~yd~~--~~~W~~~~~~~~  545 (557)
T PHA02713        521 YESYMLQDTFNVY--TYEWNHICHQHS  545 (557)
T ss_pred             ecceeehhhcCcc--cccccchhhhcC
Confidence            999  67777774  456988877653

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.46  E-value=0.23  Score=58.27  Aligned_cols=234  Identities=12%  Similarity=0.024  Sum_probs=125.5

Q ss_pred             CCCCEEEEEEcC------CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC------CcEEEEECC
Q 001352          407 PDGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAV  474 (1093)
Q Consensus       407 ~dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~  474 (1093)
                      ..+..+++|+.+      ..+..||..++.-.. ...+. +...-.+++... +.  +.++||.|      .++..||..
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~  357 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPR  357 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCC
Confidence            345566666655      358889988763211 11121 222334455544 34  78888888      357788888


Q ss_pred             CCceeE--Eeec--CCCCeEEeeecccCCccEEEEEecCCe-----EEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001352          475 TGSRTY--SFEG--HGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL  545 (1093)
Q Consensus       475 ~~~~~~--~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  545 (1093)
                      +++-..  .+..  +...+..+      +|.+.+.|+.||.     +..||..+.+-...-......-..-...-+|+..
T Consensus       358 ~~~W~~~a~M~~~R~~~~v~~l------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iY  431 (571)
T KOG4441|consen  358 TNQWTPVAPMNTKRSDFGVAVL------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLY  431 (571)
T ss_pred             CCceeccCCccCccccceeEEE------CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEE
Confidence            776443  1111  22222222      5678888888875     6667766543322222222122222233467777


Q ss_pred             EEEecCCCCc--eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEe
Q 001352          546 FSCGTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID  618 (1093)
Q Consensus       546 ~~~~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~  618 (1093)
                      ++||.++..+  ..+..||..+......-..... ..... ++. -++...++||.|+     +|..||..+.+....-.
T Consensus       432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~  508 (571)
T KOG4441|consen  432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-RSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP  508 (571)
T ss_pred             EEcCcCCCccccceEEEEcCCCCceeecCCcccc-cccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence            7777555432  6788999988765433322220 01112 222 2456666677666     37789988877765533


Q ss_pred             cCCCCCCCceEEEecCCCEEEEEECCC-----eEEEEEcCCCc
Q 001352          619 AGGGLPENPRICFNKNGTLLAVIANEN-----RIKILETPESN  656 (1093)
Q Consensus       619 ~~~~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~  656 (1093)
                      .......+..  ..-++...++|+.||     ++..||..+.+
T Consensus       509 m~~~rs~~g~--~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  509 MTSPRSAVGV--VVLGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             CccccccccE--EEECCEEEEEecccCccccceeEEcCCCCCc
Confidence            3222111111  223567777887764     45666665553

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.40  E-value=1.2  Score=48.54  Aligned_cols=239  Identities=14%  Similarity=0.181  Sum_probs=120.1

Q ss_pred             CeeEEEEccCCCEEEEEeCCeEEEEEccCcee---EEEE----CCCCCCeEEEEEcCC---CCCEEEEEeCC--------
Q 001352          805 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI----MPPSPTATSLAFNPH---DNNVIAIGMDD--------  866 (1093)
Q Consensus       805 ~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~---~~~~----~~~~~~i~~l~~s~~---d~~~lasg~~d--------  866 (1093)
                      ..+.|+|.|||+++++-..|.|++++ ..+..   +..+    .........++++|+   ++.+.++.+..        
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            35689999999998877789999999 44443   2223    123457789999992   23333333321        


Q ss_pred             CeEEEEEcCCc-------ce-eeeccc---ccCCeEEEEEeCCCCEEEEEeCCCc-------------EEEEeCCCCcee
Q 001352          867 STILIYNARSS-------EV-ISKLEG---HSKRVTGLVFSDALNILVSSGGDAQ-------------IFVWDVDGWGIQ  922 (1093)
Q Consensus       867 g~i~iwd~~~~-------~~-~~~l~~---h~~~V~~l~~s~dg~~l~s~s~dg~-------------i~iwd~~~~~~~  922 (1093)
                      ..|.-|....+       +. +..+..   ....-..|+|.|||.+.++.+..+.             |.-.+... ...
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p  160 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIP  160 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCC
Confidence            24444544433       11 112222   1223456999999988887765443             11112111 000


Q ss_pred             eeeee--------ec-CCCcccCCCCceEEEEccC-CCEEEE--EeCCeEEEEEcCCcce--------------------
Q 001352          923 TCRSL--------QT-PDGVMTLAPSETHIQFHKD-QTRFLL--VHETHLAIYEAEELTC--------------------  970 (1093)
Q Consensus       923 ~~~~~--------~~-~~~~~~~~~~v~~~~~s~d-g~~l~~--~~d~~i~vwd~~~~~~--------------------  970 (1093)
                      .....        .. ..|.    .....++|.|. |++.++  +.++.=.|.-+..|.-                    
T Consensus       161 ~dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~  236 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA  236 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred             CCCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence            00000        00 0011    12467999999 777776  4443222222222210                    


Q ss_pred             --------eeeeecCCCCCEEEEEEcc-------CCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCcccee
Q 001352          971 --------LKQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1035 (1093)
Q Consensus       971 --------~~~~~~~h~~~v~~~~fs~-------dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1035 (1093)
                              ....+. +...+..+.|-.       .|.++++.-..+.|....+..+..+.....  .+ .   ...-++.
T Consensus       237 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~---~~~~r~~  309 (331)
T PF07995_consen  237 PSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FL-G---GFGGRPR  309 (331)
T ss_dssp             SS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--EC-T---TSSS-EE
T ss_pred             cCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--cc-c---cCCCCce
Confidence                    000112 345666777753       556777666667788778775543322221  11 1   1122456


Q ss_pred             EEEeCCCCCCEEEEEeCCCcEE
Q 001352         1036 AIAAHPLKPTQFAVGLTNGEVY 1057 (1093)
Q Consensus      1036 ~~~~~p~d~~~l~~~~~dg~v~ 1057 (1093)
                      .+++.| ||.++++...+|.|+
T Consensus       310 ~v~~~p-DG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  310 DVAQGP-DGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEET-TSEEEEEE-TTTTEE
T ss_pred             EEEEcC-CCeEEEEECCCCeEe
Confidence            888999 588888888888875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.39  E-value=0.16  Score=43.76  Aligned_cols=101  Identities=17%  Similarity=0.197  Sum_probs=66.0

Q ss_pred             eEEEEEeC---CC-CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEc
Q 001352          890 VTGLVFSD---AL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA  965 (1093)
Q Consensus       890 V~~l~~s~---dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~  965 (1093)
                      |++|++..   || +.|+.|+.|..|++|+-..       .+......    ..|+.++-...+++..+-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~----~~v~~L~~~~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET----DKVTSLCSLGGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc----cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence            67777765   32 6799999999999998765       22222221    2588888888877666678899999975


Q ss_pred             CCcceeeeeecCCCCCEEEEEEcc---CCC-EEEEEeCCCcEEE
Q 001352          966 EELTCLKQWFPISSVPISQATFSC---DCR-MVFTSFVDGTLSI 1005 (1093)
Q Consensus       966 ~~~~~~~~~~~~h~~~v~~~~fs~---dg~-~l~t~~~dg~v~v 1005 (1093)
                      .    .+.|.......+.++++..   ||. -|++|=.+|.|-+
T Consensus        71 ~----~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   71 S----QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             c----ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            2    2233333334466666543   443 4888888887653

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.38  E-value=0.039  Score=65.12  Aligned_cols=104  Identities=18%  Similarity=0.210  Sum_probs=78.6

Q ss_pred             CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC
Q 001352          408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  487 (1093)
Q Consensus       408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~  487 (1093)
                      -+..++.|++.|.|-..|+.+.  ++....-..-.++|++++|+.||.  .++.|-.+|.|.+||+..++.++.+..|..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence            4667889999999999888764  222112223467999999999999  788999999999999999999999988888


Q ss_pred             CeEEeeecc-cCCccEEEEEecCCeEEEEEc
Q 001352          488 PVYSLCPHA-KENIHFIFSISVDGKIKAWLY  517 (1093)
Q Consensus       488 ~v~~~~~~~-~~~~~~l~s~~~dg~i~vwd~  517 (1093)
                      +.+.+-+.. ..++..++++...|.  +|.+
T Consensus       174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            887775432 233446777777776  4543

>smart00320 WD40 WD40 repeats

Probab=96.35  E-value=0.01  Score=40.20  Aligned_cols=39  Identities=31%  Similarity=0.443  Sum_probs=33.5

Q ss_pred             ceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001352          834 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN  873 (1093)
Q Consensus       834 ~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd  873 (1093)
                      ++....+..|...+.++.|.+ ++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            345566677888999999999 778999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PHA02713 hypothetical protein; Provisional

Probab=96.34  E-value=0.17  Score=59.66  Aligned_cols=202  Identities=8%  Similarity=-0.027  Sum_probs=100.2

Q ss_pred             CCCcEEEEEEcCC------CcEEEEECCCCceeE--EeecCCCCeEEeeecccCCccEEEEEecCC-----eEEEEEcCC
Q 001352          453 PCKQISVITCGDD------KTIKVWDAVTGSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS  519 (1093)
Q Consensus       453 d~~~l~l~s~~~d------~~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~  519 (1093)
                      ++.  +++.||.+      ..+..||..+.....  .+.........+.+    ++.+.+.|+.++     .+..||..+
T Consensus       303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~  376 (557)
T PHA02713        303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD  376 (557)
T ss_pred             CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence            444  56666643      347788887765321  11111111111211    456667777654     377888775


Q ss_pred             CCceEEecCCCCceEEEEEccCCCEEEEEecCCCC-------------------ceeEEEEeCCCCeeeeeeecccccCC
Q 001352          520 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-------------------ESFLVEWNESEGAIKRTYQGLQLQHN  580 (1093)
Q Consensus       520 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~-------------------~~~i~iwd~~~~~~~~~~~~~~~~~~  580 (1093)
                      ..=...-..+.......+..-+|+..+.|+.++..                   ...+..||+.+.+....-.-.. ...
T Consensus       377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-~r~  455 (557)
T PHA02713        377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-GTI  455 (557)
T ss_pred             CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc-ccc
Confidence            43221111111111111123367777776643210                   2458889988775533222111 001


Q ss_pred             CeEEEEEcCCCCEEEEEeCC------CcEEEEECCC-CceEEEEecCCCCCCCceEEEecCCCEEEEEECCC--eEEEEE
Q 001352          581 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE  651 (1093)
Q Consensus       581 ~v~~v~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iw~  651 (1093)
                      ....+.  -++...+.|+.+      ..+..||..+ .+....-+..........++  -+|+..++|+.++  .+..||
T Consensus       456 ~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd  531 (557)
T PHA02713        456 RPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN  531 (557)
T ss_pred             cCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence            111222  245555556643      2467899887 56543333322221222222  2688889998888  677788


Q ss_pred             cCCCceeeeccccc
Q 001352          652 TPESNSVDAAGVLS  665 (1093)
Q Consensus       652 ~~~~~~~~~~~~~~  665 (1093)
                      ..+.+.......|.
T Consensus       532 ~~~~~W~~~~~~~~  545 (557)
T PHA02713        532 VYTYEWNHICHQHS  545 (557)
T ss_pred             cccccccchhhhcC
Confidence            87776554444443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.30  E-value=0.24  Score=55.13  Aligned_cols=159  Identities=13%  Similarity=0.086  Sum_probs=92.6

Q ss_pred             CCeEEEEEcCCCCCEEEEEe--CCCeEEEEEcCCcceeeecccccCCeEEEEEeCC----CCEEEEEeCCCcEEEEeCCC
Q 001352          845 PTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       845 ~~i~~l~~s~~d~~~lasg~--~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----g~~l~s~s~dg~i~iwd~~~  918 (1093)
                      .++..++|.. +.+.+.+.-  .+|.+++   .+.+.+.+|+    .|..+.|+|-    -..|+.......|.||.+..
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kf---Gds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKF---GDSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCcccc---CCccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            4678899984 444444432  2333332   1223445554    4889999985    33566667888899999873


Q ss_pred             C--ceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEE
Q 001352          919 W--GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF  995 (1093)
Q Consensus       919 ~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~  995 (1093)
                      .  +..+...-++-+-.....--...+.|+|....|++ .....-.++++......-..-....+.|-+.+|..||..|+
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV  171 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV  171 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence            2  22221122221111111123467899999999988 44444445566543332222223478999999999999887


Q ss_pred             EEeCC-CcEEEEEcCCC
Q 001352          996 TSFVD-GTLSIHEASNL 1011 (1093)
Q Consensus       996 t~~~d-g~v~vwd~~~~ 1011 (1093)
                      ++-.. =.-++||-...
T Consensus       172 VAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  172 VAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EEeCCeEEEEEecCchh
Confidence            66433 24678886554

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.10  E-value=1.1  Score=48.79  Aligned_cols=206  Identities=13%  Similarity=0.038  Sum_probs=91.1

Q ss_pred             CCceEEEEEccCCcEEEEecCCCce--eEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE------c
Q 001352          346 VQHTLLLVGTNVGDTGLWDVNSGQK--LFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY------S  417 (1093)
Q Consensus       346 dg~~llasg~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~------~  417 (1093)
                      +.++|++-|-.++.|.|.|+.+.-.  ...+.++.-++...          ..-.....+-.-|+|+.++++-      .
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k----------~g~s~PHT~Hclp~G~imIS~lGd~~G~g  155 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEK----------TGLSRPHTVHCLPDGRIMISALGDADGNG  155 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHH----------H-EEEEEEEEE-SS--EEEEEEEETTS-S
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhh----------cCCCCCceeeecCCccEEEEeccCCCCCC
Confidence            5667676676889999999985322  11111110000000          0001122233346888888862      2


Q ss_pred             CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC--------------------CCcEEEEECCCCc
Q 001352          418 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--------------------DKTIKVWDAVTGS  477 (1093)
Q Consensus       418 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~--------------------d~~i~vwd~~~~~  477 (1093)
                      .|-+.+.|-++.+.......-.+...--..+-|.|..+  +++|...                    ..++.+||+.+.+
T Consensus       156 ~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~  233 (461)
T PF05694_consen  156 PGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK  233 (461)
T ss_dssp             --EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred             CCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence            24577888776543332111111223345667777666  6777642                    4579999999999


Q ss_pred             eeEEeecCC--CCeEEeeecccCCccEEEE-EecCCeEEEEEc-CCCC----ceEEecCC-----------------CCc
Q 001352          478 RTYSFEGHG--APVYSLCPHAKENIHFIFS-ISVDGKIKAWLY-DSLG----ARVDYDAP-----------------GLG  532 (1093)
Q Consensus       478 ~~~~~~~h~--~~v~~~~~~~~~~~~~l~s-~~~dg~i~vwd~-~~~~----~~~~~~~~-----------------~~~  532 (1093)
                      .++++.--.  .....+.|...++..+=++ +.-.++|..|-- +.++    .+..+...                 ..-
T Consensus       234 ~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L  313 (461)
T PF05694_consen  234 LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPL  313 (461)
T ss_dssp             EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE---
T ss_pred             EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCc
Confidence            999986543  2345666665655444333 333444544432 2221    11111110                 234


Q ss_pred             eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352          533 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  566 (1093)
Q Consensus       533 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~  566 (1093)
                      ++.+..|.|.++|.++..   ..+.|+.||+...
T Consensus       314 itDI~iSlDDrfLYvs~W---~~GdvrqYDISDP  344 (461)
T PF05694_consen  314 ITDILISLDDRFLYVSNW---LHGDVRQYDISDP  344 (461)
T ss_dssp             ---EEE-TTS-EEEEEET---TTTEEEEEE-SST
T ss_pred             eEeEEEccCCCEEEEEcc---cCCcEEEEecCCC
Confidence            788999999999998765   3666999998764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.08  E-value=3.2  Score=46.18  Aligned_cols=282  Identities=11%  Similarity=0.132  Sum_probs=143.6

Q ss_pred             cCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC---C--CCCEEEEEEcC
Q 001352          344 HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS---P--DGSLLGVAYSK  418 (1093)
Q Consensus       344 spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s---~--dg~~las~~~d  418 (1093)
                      +++++-.+++|+.+|.++||+...+.....               ...+-..-+.+|-.++.-   +  +...||+ -.-
T Consensus        33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~---------------~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP   96 (418)
T PF14727_consen   33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE---------------DLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHP   96 (418)
T ss_pred             CCCCccEEEEeccccEEEEEccCCCCCCCc---------------cEEEEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence            344444689999999999999965442110               000011234677766643   2  2345555 456


Q ss_pred             CEEEEEEccCCCcc------cceEEecccccc--EEEEEeeC----CCCcEEEEEEcCCCcEEEEECCCCceeEEeec--
Q 001352          419 HIVQLYAYHGGSDA------RQQLEIDAHVGN--VNDLAFSA----PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--  484 (1093)
Q Consensus       419 ~~i~iwd~~~~~~~------~~~~~~~~h~~~--v~~~~~s~----d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~--  484 (1093)
                      +.+.||.+......      ..+..+..|.-.  ...++.-|    .++. .+..-+.||.+.+++-+.-...+.+..  
T Consensus        97 ~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~l  175 (418)
T PF14727_consen   97 RKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFL  175 (418)
T ss_pred             CEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCC
Confidence            67888888422111      111122233322  22222222    2233 788889999999998555443444433  


Q ss_pred             CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-----------------------eEEecCCCC--ceEEEEEc
Q 001352          485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-----------------------RVDYDAPGL--GCTRMAYS  539 (1093)
Q Consensus       485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----------------------~~~~~~~~~--~v~~~~~s  539 (1093)
                      ..+|+   ++.+..  ..+++++.+..+..|.......                       ...+...+.  .+..+.++
T Consensus       176 lPgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~  250 (418)
T PF14727_consen  176 LPGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS  250 (418)
T ss_pred             CCcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence            34444   443343  4788888888888886532110                       011111111  23333343


Q ss_pred             cCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC----CC---CEEEEEeCCCcEEEEECCCCc
Q 001352          540 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT----AK---DQILAAGDDHVIKIWDMNKVQ  612 (1093)
Q Consensus       540 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~----~~---~~l~~~~~dg~i~iwd~~~~~  612 (1093)
                      .....+++-+     +..+.+.+. +|......+- .  ..+.....|..    ++   ..+++++.++++.||.=.  +
T Consensus       251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~  319 (418)
T PF14727_consen  251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-D--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--T  319 (418)
T ss_pred             CCCceEEEEe-----cceEEEEcC-CCeEEEEEec-C--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--e
Confidence            3333444433     445777765 4544322222 2  12222222221    22   248889999999998633  3


Q ss_pred             eEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCcee
Q 001352          613 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV  658 (1093)
Q Consensus       613 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  658 (1093)
                      ++.........-.+.-..|..-...+++-+.+|.+.+-=+.+....
T Consensus       320 L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~  365 (418)
T PF14727_consen  320 LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSL  365 (418)
T ss_pred             EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCcc
Confidence            3333332211111111223333557888888999999877766443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.06  E-value=3.3  Score=46.12  Aligned_cols=276  Identities=13%  Similarity=0.101  Sum_probs=146.1

Q ss_pred             CCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc-----CCCEEEE
Q 001352          746 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFS  820 (1093)
Q Consensus       746 ~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----dg~~la~  820 (1093)
                      +...+++|+..|.++||+-..+...+                 ...+...+     -..+|..+..-+     +...||+
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~-----------------~~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaV   93 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQP-----------------EDLLLETQ-----LKDPILQVECGKFVSGSEDLQLAV   93 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCC-----------------ccEEEEEe-----cCCcEEEEEeccccCCCCcceEEE
Confidence            34568889999999999753322111                 11122222     245566655332     3456777


Q ss_pred             EeCCeEEEEEccC--ce-------eEEEECCCC--CCeEEEEEcCC----CCCEEEEEeCCCeEEEEEcCCcceeeeccc
Q 001352          821 ASGGVISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPH----DNNVIAIGMDDSTILIYNARSSEVISKLEG  885 (1093)
Q Consensus       821 ~~dg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~s~~----d~~~lasg~~dg~i~iwd~~~~~~~~~l~~  885 (1093)
                      -....+.||.+..  |.       .+..+..|.  .....+++-|-    +..++++=+.||.+.+|+-+.-.....+.+
T Consensus        94 LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~  173 (418)
T PF14727_consen   94 LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD  173 (418)
T ss_pred             ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC
Confidence            7778888888731  11       112222232  22333333332    246888999999999999776544455554


Q ss_pred             ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee---------------------eeeeeecCCCcccCCCCceEEE
Q 001352          886 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ---------------------TCRSLQTPDGVMTLAPSETHIQ  944 (1093)
Q Consensus       886 h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~---------------------~~~~~~~~~~~~~~~~~v~~~~  944 (1093)
                       .--...+.+.+....+++++.+..|.-|....-...                     ....+..-+..    -.+..+.
T Consensus       174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~----l~i~v~~  248 (418)
T PF14727_consen  174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQA----LDIQVVR  248 (418)
T ss_pred             -CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCcee----EEEEEEE
Confidence             222334678888889999999988888876321000                     00000000000    0133334


Q ss_pred             EccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEE-EEcc----CCC---EEEEEeCCCcEEEEEcCCCceEEE
Q 001352          945 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQA-TFSC----DCR---MVFTSFVDGTLSIHEASNLEVQCR 1016 (1093)
Q Consensus       945 ~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~-~fs~----dg~---~l~t~~~dg~v~vwd~~~~~~~~~ 1016 (1093)
                      ++.....+++-.+.++.+.+. +|.......-  .....++ .|..    ++.   .++.++.++++.||.=.+....+.
T Consensus       249 ~~~~~~~IvvLger~Lf~l~~-~G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~  325 (418)
T PF14727_consen  249 FSSSESDIVVLGERSLFCLKD-NGSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQ  325 (418)
T ss_pred             cCCCCceEEEEecceEEEEcC-CCeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecC
Confidence            444444555545666666665 3443322121  1122222 1221    222   477788999999986544333322


Q ss_pred             eccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352         1017 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus      1017 ~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
                      .      +.    .+| .+.++.-++-...|++-+.+|.+.+-=+-
T Consensus       326 l------~~----~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLG  360 (418)
T PF14727_consen  326 L------PH----VPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLG  360 (418)
T ss_pred             C------CC----CCE-EEEecccCCCCceEEEEcCCCcEEEEEeC
Confidence            2      11    112 22333322235789999999999886553

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.03  E-value=2.1  Score=43.74  Aligned_cols=171  Identities=13%  Similarity=0.199  Sum_probs=108.5

Q ss_pred             ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeeccc-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352          840 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       840 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~  918 (1093)
                      +.+....+.++.|+| +.+.|++......-.|+=..+|+.+.+++- --.....+.+..+|++.++--.++.+.+..++.
T Consensus        81 i~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          81 ILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            344555699999999 777777777777777776777998877652 122345688888888888888899999988876


Q ss_pred             Ccee-eeeeeecCCCcccC-CCCceEEEEccCCCEEEEEeC-CeEEEEEcCCcce-ee-eeecCC-------CCCEEEEE
Q 001352          919 WGIQ-TCRSLQTPDGVMTL-APSETHIQFHKDQTRFLLVHE-THLAIYEAEELTC-LK-QWFPIS-------SVPISQAT  986 (1093)
Q Consensus       919 ~~~~-~~~~~~~~~~~~~~-~~~v~~~~~s~dg~~l~~~~d-~~i~vwd~~~~~~-~~-~~~~~h-------~~~v~~~~  986 (1093)
                      +... .....+..-+.... ......++|+|.+..|....+ +-+.||.+..+.. +. .....+       -..|.++.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            5321 11111221111111 246889999999988888654 4466665543321 11 001111       23466677


Q ss_pred             Ecc-CCCEEEEEeCCCcEEEEEcCCC
Q 001352          987 FSC-DCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus       987 fs~-dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
                      |.+ .+.+||-+.+++.+.-.|....
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCCC
Confidence            775 5667777777777777777654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.02  E-value=1.9  Score=44.06  Aligned_cols=204  Identities=16%  Similarity=0.245  Sum_probs=122.8

Q ss_pred             cccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc
Q 001352          734 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  813 (1093)
Q Consensus       734 ~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  813 (1093)
                      ....+.+++|+|+.+.|++........|+-                      ...|..+.+..+++   -.....+.+..
T Consensus        84 ~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyig  138 (316)
T COG3204          84 ETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYIG  138 (316)
T ss_pred             ccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEec
Confidence            445599999999999999988876655542                      23455566666654   33345677777


Q ss_pred             CCCEEEEEe-CCeEEEEEccCceeEEE-------EC--CC-CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc-e--
Q 001352          814 NDAYLFSAS-GGVISLYIVMTFKTILT-------IM--PP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-V--  879 (1093)
Q Consensus       814 dg~~la~~~-dg~i~iwd~~~~~~~~~-------~~--~~-~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~-~--  879 (1093)
                      +|+++++-. ++.+.++.+.....+..       +.  .+ +...-.+||+| .+..|..+-+..-+.||....+. .  
T Consensus       139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~  217 (316)
T COG3204         139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLS  217 (316)
T ss_pred             CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccc
Confidence            888777665 57787777665432221       11  12 44667899999 66667767777767777665332 1  


Q ss_pred             eeeccccc-------CCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCE
Q 001352          880 ISKLEGHS-------KRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  951 (1093)
Q Consensus       880 ~~~l~~h~-------~~V~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~  951 (1093)
                      +.....+.       ..|.++.|.+ .+.+|+-+.+++.+.-.|....-...........+-...-.....++..++|.+
T Consensus       218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l  297 (316)
T COG3204         218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL  297 (316)
T ss_pred             cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence            11111222       3466778875 456677777788888888876432221122222221111124566888888887


Q ss_pred             EEEEeCCeEEEE
Q 001352          952 FLLVHETHLAIY  963 (1093)
Q Consensus       952 l~~~~d~~i~vw  963 (1093)
                      -+++..+-.+.+
T Consensus       298 YIvSEPnlfy~F  309 (316)
T COG3204         298 YIVSEPNLFYRF  309 (316)
T ss_pred             EEEecCCcceec
Confidence            777765554443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.99  E-value=1.2  Score=43.45  Aligned_cols=137  Identities=13%  Similarity=0.094  Sum_probs=78.6

Q ss_pred             cccEEEEEeeCCCCcEEEEEEcCC---------CcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeE
Q 001352          442 VGNVNDLAFSAPCKQISVITCGDD---------KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI  512 (1093)
Q Consensus       442 ~~~v~~~~~s~d~~~l~l~s~~~d---------~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i  512 (1093)
                      ..+.+.-..+|+|+  +++-.-.|         |.++.|-  .+..+..+...-.--+.++|.. ....+-+.-+.+-.|
T Consensus       108 knR~NDgkvdP~Gr--yy~GtMad~~~~le~~~g~Ly~~~--~~h~v~~i~~~v~IsNgl~Wd~-d~K~fY~iDsln~~V  182 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGR--YYGGTMADFGDDLEPIGGELYSWL--AGHQVELIWNCVGISNGLAWDS-DAKKFYYIDSLNYEV  182 (310)
T ss_pred             hcccccCccCCCCc--eeeeeeccccccccccccEEEEec--cCCCceeeehhccCCccccccc-cCcEEEEEccCceEE
Confidence            44667778899998  43322222         2333332  1111222222222334556652 222344556667778


Q ss_pred             EEEEcC--CC-----CceEEecC----CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCC
Q 001352          513 KAWLYD--SL-----GARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS  581 (1093)
Q Consensus       513 ~vwd~~--~~-----~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~  581 (1093)
                      .-||.+  ++     +.+..+..    .......+++..+|++.+++-.    .++|...|+.+|+.+..+.-..   ..
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt---~q  255 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPT---PQ  255 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCC---Cc
Confidence            778743  22     22222222    1112345666778888877765    5569999999999999998876   78


Q ss_pred             eEEEEEcCC
Q 001352          582 VSVVHFDTA  590 (1093)
Q Consensus       582 v~~v~~~~~  590 (1093)
                      +++++|...
T Consensus       256 itsccFgGk  264 (310)
T KOG4499|consen  256 ITSCCFGGK  264 (310)
T ss_pred             eEEEEecCC
Confidence            999999754

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.86  E-value=1.3  Score=48.28  Aligned_cols=154  Identities=12%  Similarity=0.076  Sum_probs=74.3

Q ss_pred             CccEEEEEe-cCCeEEEEEcCCCCc----eEEecC---CC----CceEEEEEccCCCEEEEEec--CCCCceeEEEEeCC
Q 001352          499 NIHFIFSIS-VDGKIKAWLYDSLGA----RVDYDA---PG----LGCTRMAYSANGRRLFSCGT--SKEGESFLVEWNES  564 (1093)
Q Consensus       499 ~~~~l~s~~-~dg~i~vwd~~~~~~----~~~~~~---~~----~~v~~~~~s~d~~~l~~~~~--~~~~~~~i~iwd~~  564 (1093)
                      +.++|+..+ ..++|.+.|+.+...    ...++.   ..    ..-..+-.-|+|+.++++-.  .+++.+-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            345666665 678899999874322    112221   00    12234455689988887643  44556778899988


Q ss_pred             CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe--------------------CCCcEEEEECCCCceEEEEecCCCCC
Q 001352          565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--------------------DDHVIKIWDMNKVQLLTTIDAGGGLP  624 (1093)
Q Consensus       565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~  624 (1093)
                      +.+.+............-..+.+.|..+.+++..                    ...++.+||+.+.+.++++.......
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            8888777765442223456677888888888754                    24579999999999999998764322


Q ss_pred             CCceEEEe--cCCCEEEEEE-CCCeEEEEEc
Q 001352          625 ENPRICFN--KNGTLLAVIA-NENRIKILET  652 (1093)
Q Consensus       625 ~v~~v~~s--~~~~~l~~~~-~dg~i~iw~~  652 (1093)
                      ....+.|.  |+..+=++++ -..+|..|--
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k  276 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYK  276 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEE
Confidence            23456665  4444433332 3444544433

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.83  E-value=3.2  Score=44.08  Aligned_cols=230  Identities=11%  Similarity=0.063  Sum_probs=111.8

Q ss_pred             CeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEEC---CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-cce-
Q 001352          805 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEV-  879 (1093)
Q Consensus       805 ~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~-~~~-  879 (1093)
                      ...++.|..+ ..++++..+ +.+.....|+.-..+.   .-......+.... ++..++ ++..|.|+  ...+ |+. 
T Consensus        63 ~l~~I~f~~~-~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy--~T~DgG~tW  136 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIY--RTTDGGKTW  136 (302)
T ss_dssp             EEEEEEEETT-EEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EE--EESSTTSSE
T ss_pred             eEEEEEecCC-ceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEE--EeCCCCCCe
Confidence            4567777643 445555545 3333333343322221   1222333343333 333333 34455543  3333 321 


Q ss_pred             eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCe
Q 001352          880 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH  959 (1093)
Q Consensus       880 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~  959 (1093)
                      ......-.+.+..+.-++||+++++++.-....-||-....   .........     .+|..+.|+||+.+.+++..+.
T Consensus       137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~~-----~riq~~gf~~~~~lw~~~~Gg~  208 (302)
T PF14870_consen  137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNSS-----RRIQSMGFSPDGNLWMLARGGQ  208 (302)
T ss_dssp             EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--SS-----S-EEEEEE-TTS-EEEEETTTE
T ss_pred             eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCcc-----ceehhceecCCCCEEEEeCCcE
Confidence            12233445778899999999999888766666678765421   112222211     3699999999999988888888


Q ss_pred             EEEEE-cCCcceeee-eec--CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCcccee
Q 001352          960 LAIYE-AEELTCLKQ-WFP--ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1035 (1093)
Q Consensus       960 i~vwd-~~~~~~~~~-~~~--~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1035 (1093)
                      |+.=+ ...++.... ..+  .....+..++|.+++...++|+ .|. .+...+.|+.-.+.......+..     ++  
T Consensus       209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~-l~~S~DgGktW~~~~~~~~~~~n-----~~--  279 (302)
T PF14870_consen  209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGT-LLVSTDGGKTWQKDRVGENVPSN-----LY--  279 (302)
T ss_dssp             EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT--EEEESSTTSS-EE-GGGTTSSS----------
T ss_pred             EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-Ccc-EEEeCCCCccceECccccCCCCc-----eE--
Confidence            88776 223322221 111  1244589999999988888665 453 45677788776665544444433     44  


Q ss_pred             EEEeCCCCCCEEEEEeCCCcEEEE
Q 001352         1036 AIAAHPLKPTQFAVGLTNGEVYVI 1059 (1093)
Q Consensus      1036 ~~~~~p~d~~~l~~~~~dg~v~~w 1059 (1093)
                      .+.|.+  ++.-.+-+.+|.|--|
T Consensus       280 ~i~f~~--~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  280 RIVFVN--PDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             EEEEEE--TTEEEEE-STTEEEEE
T ss_pred             EEEEcC--CCceEEECCCcEEEEe
Confidence            455553  2466666788877555

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.64  E-value=0.4  Score=41.33  Aligned_cols=98  Identities=16%  Similarity=0.166  Sum_probs=62.9

Q ss_pred             eecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEE
Q 001352          342 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV  421 (1093)
Q Consensus       342 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i  421 (1093)
                      .|..||..-|++|+.|..|+||+=+  +.+.+.                    .-.+.|++++-... .+++.+..+|+|
T Consensus         9 d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei--------------------~e~~~v~~L~~~~~-~~F~Y~l~NGTV   65 (111)
T PF14783_consen    9 DFDGDGENELLVGSDDFEIRVFKGD--EIVAEI--------------------TETDKVTSLCSLGG-GRFAYALANGTV   65 (111)
T ss_pred             ecCCCCcceEEEecCCcEEEEEeCC--cEEEEE--------------------ecccceEEEEEcCC-CEEEEEecCCEE
Confidence            3455766678999999999999954  333321                    13467888887766 678899999999


Q ss_pred             EEEEccCCCcccceEEeccccccEEEEEe---eCCCCcEEEEEEcCCCcEE
Q 001352          422 QLYAYHGGSDARQQLEIDAHVGNVNDLAF---SAPCKQISVITCGDDKTIK  469 (1093)
Q Consensus       422 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~---s~d~~~l~l~s~~~d~~i~  469 (1093)
                      -+|+-..    +.. ..+. ...++++++   ..||.. -|++|=.+|.|-
T Consensus        66 GvY~~~~----RlW-RiKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve  109 (111)
T PF14783_consen   66 GVYDRSQ----RLW-RIKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE  109 (111)
T ss_pred             EEEeCcc----eee-eecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence            9998643    211 2222 223555544   334443 577777777664

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.56  E-value=0.057  Score=38.56  Aligned_cols=32  Identities=19%  Similarity=0.343  Sum_probs=29.1

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCEEEEEEcc
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH  427 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~  427 (1093)
                      ....|.+++|+|...+||.++.+|.|.+|.++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            34679999999999999999999999999983

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.50  E-value=0.88  Score=53.55  Aligned_cols=225  Identities=12%  Similarity=0.109  Sum_probs=111.7

Q ss_pred             CcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC------CeEEEEEcCCCceeeecccccccceeeeec
Q 001352          601 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE------NRIKILETPESNSVDAAGVLSDNLRKLSVN  674 (1093)
Q Consensus       601 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~  674 (1093)
                      ..+..+|..+++............ ..+++.. ++...++|+.|      .++..||...++......-..... ...  
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~-~~~--  375 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRS-DFG--  375 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccc-cce--
Confidence            457788888876655444433221 2334443 46788888888      356777777665433221111111 000  


Q ss_pred             CCCceeeeeccCCceEecCCCCCCCccceeeccccc-----ceecceeeccCccccccccCccccccceEEEEeecCCce
Q 001352          675 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK-----SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA  749 (1093)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~-----i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~  749 (1093)
                                   ..      .-+|...+.|+.||.     +..||.....-...-..      ....-..-+..-+|+.
T Consensus       376 -------------v~------~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m------~~~r~~~gv~~~~g~i  430 (571)
T KOG4441|consen  376 -------------VA------VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM------LTRRSGHGVAVLGGKL  430 (571)
T ss_pred             -------------eE------EECCEEEEEeccccccccccEEEecCCCCcccccCCC------CcceeeeEEEEECCEE
Confidence                         01      124566666776654     45555443222211111      1111222233446777


Q ss_pred             EEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CC----
Q 001352          750 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GG----  824 (1093)
Q Consensus       750 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg----  824 (1093)
                      .++++.++.-..                -.++..||+.++.-........  .... ..++ .-++...+.|+ ++    
T Consensus       431 Yi~GG~~~~~~~----------------l~sve~YDP~t~~W~~~~~M~~--~R~~-~g~a-~~~~~iYvvGG~~~~~~~  490 (571)
T KOG4441|consen  431 YIIGGGDGSSNC----------------LNSVECYDPETNTWTLIAPMNT--RRSG-FGVA-VLNGKIYVVGGFDGTSAL  490 (571)
T ss_pred             EEEcCcCCCccc----------------cceEEEEcCCCCceeecCCccc--cccc-ceEE-EECCEEEEECCccCCCcc
Confidence            777776654311                1245556666655222222211  1111 1233 33666666665 43    


Q ss_pred             -eEEEEEccCce--eEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCcc
Q 001352          825 -VISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSE  878 (1093)
Q Consensus       825 -~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~i~iwd~~~~~  878 (1093)
                       ++..||..+.+  .+..+......+...++   ++++.++|+.||     +|..||..+.+
T Consensus       491 ~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  491 SSVERYDPETNQWTMVAPMTSPRSAVGVVVL---GGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             ceEEEEcCCCCceeEcccCccccccccEEEE---CCEEEEEecccCccccceeEEcCCCCCc
Confidence             37778877543  33333333333333333   677888898887     67777766543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.43  E-value=3.6  Score=42.08  Aligned_cols=192  Identities=11%  Similarity=0.072  Sum_probs=113.1

Q ss_pred             cceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCC
Q 001352          736 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  815 (1093)
Q Consensus       736 ~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg  815 (1093)
                      .-...+.|..+|..+-+++..|.-.+                    +.+++.+|+......++   ...--..+++..|.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l--------------------~~~d~~tg~~~~~~~l~---~~~FgEGit~~~d~  101 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSL--------------------RKVDLETGKVLQSVPLP---PRYFGEGITILGDK  101 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEE--------------------EEEETTTSSEEEEEE-T---TT--EEEEEEETTE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEE--------------------EEEECCCCcEEEEEECC---ccccceeEEEECCE
Confidence            44677888888887777777764333                    33455566655555553   23334556666665


Q ss_pred             CEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccc--c---CCe
Q 001352          816 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH--S---KRV  890 (1093)
Q Consensus       816 ~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h--~---~~V  890 (1093)
                      -+..+--++...+||..+.+.+.++.- .+.=..++.   |++.|+.......++++|..+.+....+.-.  .   ..+
T Consensus       102 l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L  177 (264)
T PF05096_consen  102 LYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL  177 (264)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred             EEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence            555666689999999999999988863 345566663   5667777776778999999887766555432  1   234


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecC-------CCcccCCCCceEEEEccCCCEEEEE
Q 001352          891 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP-------DGVMTLAPSETHIQFHKDQTRFLLV  955 (1093)
Q Consensus       891 ~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~s~dg~~l~~~  955 (1093)
                      .-+.+- +|...|=.=....|..-|..+|+.....-+..+       ........-...+|+.|....+.+.
T Consensus       178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT  248 (264)
T PF05096_consen  178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT  248 (264)
T ss_dssp             EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred             EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence            456665 666666555555677778877765543211111       1111112357899999888777663

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.22  E-value=5.1  Score=48.73  Aligned_cols=204  Identities=12%  Similarity=0.096  Sum_probs=118.1

Q ss_pred             CCCEEEEEeCCeEEEEEccCceeEEEECCCCCC--------eEEEEEcC---------------CCCCEEEEEeCCCeEE
Q 001352          814 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPT--------ATSLAFNP---------------HDNNVIAIGMDDSTIL  870 (1093)
Q Consensus       814 dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~d~~~lasg~~dg~i~  870 (1093)
                      ++.++++..++.|.-.|..+|+.+.++......        ...+++-.               ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            444444444688888899999888877543211        11233321               0234778899999999


Q ss_pred             EEEcCCcceeeecccccCCeE-------------EEEEeC--CCCEEEEEeC----------CCcEEEEeCCCCceeeee
Q 001352          871 IYNARSSEVISKLEGHSKRVT-------------GLVFSD--ALNILVSSGG----------DAQIFVWDVDGWGIQTCR  925 (1093)
Q Consensus       871 iwd~~~~~~~~~l~~h~~~V~-------------~l~~s~--dg~~l~s~s~----------dg~i~iwd~~~~~~~~~~  925 (1093)
                      -.|.++|+.+..+.. .+.|.             .+.-+|  .+..++.++.          +|.|+-+|..+|+..=..
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998876532 22110             111111  1345555542          688999999998854322


Q ss_pred             eeecC-------CCccc--CCCCc-eEEEEccCCCEEEEE-------------------eCCeEEEEEcCCcceeeeeec
Q 001352          926 SLQTP-------DGVMT--LAPSE-THIQFHKDQTRFLLV-------------------HETHLAIYEAEELTCLKQWFP  976 (1093)
Q Consensus       926 ~~~~~-------~~~~~--~~~~v-~~~~~s~dg~~l~~~-------------------~d~~i~vwd~~~~~~~~~~~~  976 (1093)
                      -...+       .+..-  ....+ ...++.++..++...                   ..+.|.-.|+++|+..-.+..
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            11100       00000  00011 334555555555441                   124566778889988766544


Q ss_pred             CC--------CCCEEEEEEcc-CCC---EEEEEeCCCcEEEEEcCCCceEEEec
Q 001352          977 IS--------SVPISQATFSC-DCR---MVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       977 ~h--------~~~v~~~~fs~-dg~---~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                      .|        .....-+.+.. ||+   .++.++.+|.+.+.|-.+|+.+..+.
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            22        11122233333 664   78999999999999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.07  E-value=0.06  Score=52.29  Aligned_cols=102  Identities=16%  Similarity=0.189  Sum_probs=69.0

Q ss_pred             EEEEE-eCCeEEEEEccCceeE-EEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeeccccc-CCeEEE
Q 001352          817 YLFSA-SGGVISLYIVMTFKTI-LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGL  893 (1093)
Q Consensus       817 ~la~~-~dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~-~~V~~l  893 (1093)
                      -+++| ++|.|.+|...-.... .........|-++.-.-+++.+..+++.||.|+.|++.-++.+...-.|. .++..+
T Consensus        72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~  151 (238)
T KOG2444|consen   72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL  151 (238)
T ss_pred             eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence            34444 5899999987622111 11111222333333333356689999999999999999988888777787 566666


Q ss_pred             EEeCCCCEEEEE--eCCCcEEEEeCCC
Q 001352          894 VFSDALNILVSS--GGDAQIFVWDVDG  918 (1093)
Q Consensus       894 ~~s~dg~~l~s~--s~dg~i~iwd~~~  918 (1093)
                      ..+..++.++++  |.|..++.|++..
T Consensus       152 ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  152 IVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             EEecCCceEEeeccccchhhhhcchhh
Confidence            666677777777  7888888888865

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.03  E-value=0.28  Score=47.68  Aligned_cols=114  Identities=12%  Similarity=0.173  Sum_probs=78.6

Q ss_pred             eeeeecCCCceEEEEEccCCcEEEEe--cCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352          339 MSMDFHPVQHTLLLVGTNVGDTGLWD--VNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  416 (1093)
Q Consensus       339 ~~~~~spdg~~llasg~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~  416 (1093)
                      +.++|+-|.+.+..+-+.+-+|.-||  ..+|.......  ++|+... +++...       ....++...+|.+.+++.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~--i~dlrk~-~~~e~~-------~PDGm~ID~eG~L~Va~~  230 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKV--IFDLRKS-QPFESL-------EPDGMTIDTEGNLYVATF  230 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcce--eEEeccC-CCcCCC-------CCCcceEccCCcEEEEEe
Confidence            56889999988888888888898888  77887665322  3444332 222211       112244455888889999


Q ss_pred             cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC
Q 001352          417 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD  465 (1093)
Q Consensus       417 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d  465 (1093)
                      ..++|...|..+|+.+.   ++.-....|++++|-..+-.++.+|+..+
T Consensus       231 ng~~V~~~dp~tGK~L~---eiklPt~qitsccFgGkn~d~~yvT~aa~  276 (310)
T KOG4499|consen  231 NGGTVQKVDPTTGKILL---EIKLPTPQITSCCFGGKNLDILYVTTAAK  276 (310)
T ss_pred             cCcEEEEECCCCCcEEE---EEEcCCCceEEEEecCCCccEEEEEehhc
Confidence            99999999999998776   44455888999999765444456666543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.88  E-value=6.4  Score=43.89  Aligned_cols=139  Identities=14%  Similarity=0.155  Sum_probs=78.7

Q ss_pred             CCeeEEEEccCCCEEEEEe------------C-CeEEEEEccC--cee--EEEECCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001352          804 EAVPCFALSKNDAYLFSAS------------G-GVISLYIVMT--FKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD  866 (1093)
Q Consensus       804 ~~v~~l~~s~dg~~la~~~------------d-g~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~d  866 (1093)
                      .....|+|.++|+++++-.            . +.|.+++-.+  |+.  ...+.........+++.+ ++ +++ ++..
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence            3456889999999887742            1 2677776442  322  234433344568899998 77 444 4444


Q ss_pred             CeEEEEEcCCc-----c--ee-eeccc----ccCCeEEEEEeCCCCEEEEEeCC-------------------CcEEEEe
Q 001352          867 STILIYNARSS-----E--VI-SKLEG----HSKRVTGLVFSDALNILVSSGGD-------------------AQIFVWD  915 (1093)
Q Consensus       867 g~i~iwd~~~~-----~--~~-~~l~~----h~~~V~~l~~s~dg~~l~s~s~d-------------------g~i~iwd  915 (1093)
                      ...++.+....     +  .+ ..+..    +......++|.|||.+.++.+..                   |.|.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            33334344321     1  11 22322    12346789999999887766521                   3344444


Q ss_pred             CCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE
Q 001352          916 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  954 (1093)
Q Consensus       916 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  954 (1093)
                      .++++.   ..+  ..+..    ....++|+|+|+++++
T Consensus       171 pdg~~~---e~~--a~G~r----np~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       171 PDGGKL---RVV--AHGFQ----NPYGHSVDSWGDVFFC  200 (367)
T ss_pred             cCCCeE---EEE--ecCcC----CCccceECCCCCEEEE
Confidence            444331   111  12222    2568999999999877

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=94.76  E-value=13  Score=44.95  Aligned_cols=104  Identities=13%  Similarity=0.132  Sum_probs=64.7

Q ss_pred             EEEccCCCEEEEEeCCeEEEEEccCceeEEEEC--CCCCCeEEEEEcCCCCCEEEEEeCCCeEEE--EEcCCcceeeecc
Q 001352          809 FALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKLE  884 (1093)
Q Consensus       809 l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~i~i--wd~~~~~~~~~l~  884 (1093)
                      .|+.|-..++.+|-...+++||+...+.++...  .....|+.+.+.   +..+++|..--.|.+  |+-... .+..+.
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n-~l~~fa 1014 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDN-QLIVFA 1014 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCC-eEEEEe
Confidence            456677778888888999999998777665533  234567777774   457777776555555  444433 334443


Q ss_pred             c--ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 001352          885 G--HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD  917 (1093)
Q Consensus       885 ~--h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~  917 (1093)
                      +  -...|+++.+- |-..+|.+..=|.+.+-.+.
T Consensus      1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             CCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence            3  23346666665 44567766665655554443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.73  E-value=4.4  Score=48.82  Aligned_cols=72  Identities=11%  Similarity=0.185  Sum_probs=50.8

Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------cce--ee-ec--------ccccCCeEEEEEeCC---CC
Q 001352          845 PTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------SEV--IS-KL--------EGHSKRVTGLVFSDA---LN  900 (1093)
Q Consensus       845 ~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~----------~~~--~~-~l--------~~h~~~V~~l~~s~d---g~  900 (1093)
                      -.|..+.++| +|++||..+..|.+ |-.+..          |+.  .. .+        ..+...|..+.|+|.   +.
T Consensus        85 f~v~~i~~n~-~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNP-TGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECC-CCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            4788999999 89999988887633 333321          111  11 11        134567889999986   47


Q ss_pred             EEEEEeCCCcEEEEeCCC
Q 001352          901 ILVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       901 ~l~s~s~dg~i~iwd~~~  918 (1093)
                      +|+.-..|+++|+||+..
T Consensus       163 ~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             eEEEEecCCEEEEEecCC
Confidence            888889999999999975

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.57  E-value=3.9  Score=41.30  Aligned_cols=192  Identities=12%  Similarity=0.103  Sum_probs=127.0

Q ss_pred             CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 001352          846 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR  925 (1093)
Q Consensus       846 ~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~  925 (1093)
                      .-..++-+| ||..-+++...|.|--.|..+|+....--+....-..+..-|||...++-+.. -|.-.|-++.+...  
T Consensus        63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~--  138 (353)
T COG4257          63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR--  138 (353)
T ss_pred             CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE--
Confidence            345677888 88888888888888888999998766555555666778888999887764444 35555666655333  


Q ss_pred             eeecCCCcccCCCCceEEEEccCCCEEEEEeC----------CeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEE
Q 001352          926 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE----------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF  995 (1093)
Q Consensus       926 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d----------~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~  995 (1093)
                       .+.+..+..  .......|.+.|++-.++..          +.+++|+..           .......++..|||...+
T Consensus       139 -f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-----------qG~gpyGi~atpdGsvwy  204 (353)
T COG4257         139 -FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-----------QGGGPYGICATPDGSVWY  204 (353)
T ss_pred             -eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------CCCCCcceEECCCCcEEE
Confidence             222222222  35788999999999888543          235555543           244566788999999988


Q ss_pred             EEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCC
Q 001352          996 TSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1064 (1093)
Q Consensus       996 t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1064 (1093)
                      +.-.+..|..-|..++... .+.....+..+       +..+..+|+ +..-++....+.++-+|.+..
T Consensus       205 aslagnaiaridp~~~~ae-v~p~P~~~~~g-------sRriwsdpi-g~~wittwg~g~l~rfdPs~~  264 (353)
T COG4257         205 ASLAGNAIARIDPFAGHAE-VVPQPNALKAG-------SRRIWSDPI-GRAWITTWGTGSLHRFDPSVT  264 (353)
T ss_pred             EeccccceEEcccccCCcc-eecCCCccccc-------ccccccCcc-CcEEEeccCCceeeEeCcccc
Confidence            8777778888887777222 22212211111       223446664 777888777888888887543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.56  E-value=0.13  Score=36.83  Aligned_cols=34  Identities=21%  Similarity=0.537  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce
Q 001352          844 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  879 (1093)
Q Consensus       844 ~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~  879 (1093)
                      ...|.+++|+| ...+||.|+.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence            45799999999 8999999999999999998 4554

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.42  E-value=1  Score=52.37  Aligned_cols=124  Identities=9%  Similarity=0.083  Sum_probs=76.8

Q ss_pred             ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecc-cccCCeEEEEEe--CCCCEEEEEeCCCcEEEEeC
Q 001352          840 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHSKRVTGLVFS--DALNILVSSGGDAQIFVWDV  916 (1093)
Q Consensus       840 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~-~h~~~V~~l~~s--~dg~~l~s~s~dg~i~iwd~  916 (1093)
                      +...-...+-+.-|. -++..++-+....+.|||...+.....-. ...+.|..+.|.  |||+.+++.|..+.|.++.-
T Consensus        25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            333344555555555 45555555555699999999876443221 356789999886  78999999999999999854


Q ss_pred             CC----CceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEc
Q 001352          917 DG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA  965 (1093)
Q Consensus       917 ~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~  965 (1093)
                      ..    ........++...-....+.+|.+..|.+||.+++ +.++.+.|+|-
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk  155 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDK  155 (631)
T ss_pred             cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEECC
Confidence            31    11111112222111111113688999999998655 44567888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.42  E-value=3.1  Score=48.09  Aligned_cols=182  Identities=12%  Similarity=0.141  Sum_probs=99.0

Q ss_pred             eEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeee--c--ccccCCeEEEEEeCCCC
Q 001352          825 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALN  900 (1093)
Q Consensus       825 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~dg~  900 (1093)
                      .|+|+++. |..+..+.-..+.+..+.|+.  ..-|++...+|++++|++. |+.+..  .  +.....|..+.|..+|-
T Consensus        65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             eEEEEecc-ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce
Confidence            47888864 666655544445888999996  4566678899999999987 333332  1  22334466666666664


Q ss_pred             EEEEEeCCCcE-EEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCE--EEEEeC--CeEEEEEcCCcceeeeee
Q 001352          901 ILVSSGGDAQI-FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLVHE--THLAIYEAEELTCLKQWF  975 (1093)
Q Consensus       901 ~l~s~s~dg~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~--l~~~~d--~~i~vwd~~~~~~~~~~~  975 (1093)
                      .+.+.  +|++ .+-+.+....   ..+...++...   .-.+...-+++..  ++..-+  -...++..+++.....-+
T Consensus       141 avlt~--~g~v~~i~~~~~~~~---~~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~  212 (829)
T KOG2280|consen  141 AVLTV--SGQVILINGVEEPKL---RKMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL  212 (829)
T ss_pred             EEEec--CCcEEEEcCCCcchh---hhCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence            44443  3433 3333333111   11111111111   1123333333221  111111  111222222222111111


Q ss_pred             cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352          976 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       976 ~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                      ......+..+..||+.++|+--..+|.|.+-+.+..+..+.+.
T Consensus       213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            1113578889999999999999999999999999988888877

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.23  E-value=1.1  Score=53.90  Aligned_cols=94  Identities=16%  Similarity=0.220  Sum_probs=63.4

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC----------C--ceEEEeccccccCCCCCCCccceeEEEeCCC--CC
Q 001352          979 SVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------L--EVQCRILSTAYLRPTTSCLHVYPHAIAAHPL--KP 1044 (1093)
Q Consensus       979 ~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~----------~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~ 1044 (1093)
                      .-.|..+.++|+|++|+..|..| |.|-.++.          |  ...|+..+....-.. ....+....+.|||.  ++
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~-~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT-SNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhcc-CCCCceEEEEEEcCCCCCC
Confidence            45788999999999999998765 66666542          1  223433322111111 123345568899995  35


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCcccCCCc
Q 001352         1045 TQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1074 (1093)
Q Consensus      1045 ~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~ 1074 (1093)
                      ..|++-+.|+++++||+.+...-|.+.+-.
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~~~p~~v~~~~  191 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDPQHPWQVLSLS  191 (717)
T ss_pred             CeEEEEecCCEEEEEecCCCCCCeEEEEcc
Confidence            789999999999999998877767776533

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA03098 kelch-like protein; Provisional

Probab=94.17  E-value=1.8  Score=51.44  Aligned_cols=153  Identities=8%  Similarity=-0.029  Sum_probs=73.2

Q ss_pred             CccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC--CceeEEEEeCCCCeeeee
Q 001352          499 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRT  571 (1093)
Q Consensus       499 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~  571 (1093)
                      ++.+.+.|+.+     ..+..||..+..-...-..+.......+..-+++..+.|+....  .-..+..||+.+.+....
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            44566667655     24667776654322111111111111122345666666663221  124688999887654332


Q ss_pred             eecccccCCCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC
Q 001352          572 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  643 (1093)
Q Consensus       572 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  643 (1093)
                      -.... ..... +++ ..++..++.||.+        ..+.+||..+++....-.....  .....+..-+++.++.|+.
T Consensus       422 ~~~p~-~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~  496 (534)
T PHA03098        422 SPLPI-SHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGGD  496 (534)
T ss_pred             CCCCc-cccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEEECCEEEEEcCC
Confidence            21111 00111 222 2244555556532        2388899888766543222111  1111122236777777765


Q ss_pred             C-----CeEEEEEcCCCc
Q 001352          644 E-----NRIKILETPESN  656 (1093)
Q Consensus       644 d-----g~i~iw~~~~~~  656 (1093)
                      +     +.+.+||..+.+
T Consensus       497 ~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        497 KYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             cCCcccceeEEEeCCCCE
Confidence            4     467778777653

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.05  E-value=1.3  Score=51.48  Aligned_cols=112  Identities=13%  Similarity=0.192  Sum_probs=77.0

Q ss_pred             cEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEee-cCCCCeEEeeecccCCccEEEEEecCCeEEEEEc-----
Q 001352          444 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY-----  517 (1093)
Q Consensus       444 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~-----  517 (1093)
                      ...-+.-|.-++  ..+.-+...++.|||...+...++-. ...+.|..+.|...++++.+++.+..+.|.++--     
T Consensus        31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            344455555555  34444445579999999887654332 3578899999999999999999999999999843     


Q ss_pred             CCCC----ceE--EecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001352          518 DSLG----ARV--DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  563 (1093)
Q Consensus       518 ~~~~----~~~--~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~  563 (1093)
                      ....    .+.  .+.. ..++|....|.++|..++.++.      ++.++|-
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk  155 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDK  155 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECC
Confidence            1111    111  1222 3357889999999988887643      4788774

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.95  E-value=0.19  Score=48.93  Aligned_cols=106  Identities=12%  Similarity=0.053  Sum_probs=64.3

Q ss_pred             CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEE-EeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC
Q 001352          408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL-AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  486 (1093)
Q Consensus       408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~-~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~  486 (1093)
                      -+..+++|+.+|.|.+|.+.........  ...-...|.++ .-..++.  +..+++.||.|+.|++.-++.+.....|.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~--~~s~~e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~~g~~g~h~  144 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDR--VCSGEESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKVLGYVGQHN  144 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHh--hhcccccceeccccccccc--eeEEeccCCceeeeccccCceeeeecccc
Confidence            3567889999999999998732211111  11112223332 2233444  68889999999999999998887777676


Q ss_pred             -CCeEEeeecccCCccEEEEE--ecCCeEEEEEcCC
Q 001352          487 -APVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDS  519 (1093)
Q Consensus       487 -~~v~~~~~~~~~~~~~l~s~--~~dg~i~vwd~~~  519 (1093)
                       .++......  ..+..++.+  |.|..++.|++..
T Consensus       145 ~~~~e~~ivv--~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  145 FESGEELIVV--GSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CCCcceeEEe--cCCceEEeeccccchhhhhcchhh
Confidence             444333332  223455555  6666666666543

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=93.88  E-value=20  Score=43.53  Aligned_cols=121  Identities=12%  Similarity=-0.040  Sum_probs=75.6

Q ss_pred             EEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce-EEEeccc
Q 001352          943 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV-QCRILST 1020 (1093)
Q Consensus       943 ~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~-~~~~~~~ 1020 (1093)
                      .|..|-..++++|....+++||+...+.++.....+ ...|+++++  .+..+++|...-.|.++....... +..|. .
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fa-d 1015 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFA-D 1015 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEe-C
Confidence            466777778888888999999998887776654444 556777665  456777777666666655444322 22222 2


Q ss_pred             cccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCCcccCCCcc
Q 001352         1021 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1075 (1093)
Q Consensus      1021 ~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~ 1075 (1093)
                      ...|..     |..+.   .- |-..+|.+..=|.+.+-+++..-.+-+...|.+
T Consensus      1016 D~~pR~-----Vt~~~---~l-D~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~ 1061 (1205)
T KOG1898|consen 1016 DPVPRH-----VTALE---LL-DYDTVAGADRFGNIAVVRIPPDVSEEASEDPTE 1061 (1205)
T ss_pred             CCccce-----eeEEE---Ee-cCCceeeccccCcEEEEECCCcchhhhccCCcc
Confidence            222222     33222   21 456899999999999999876655544444433

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.54  E-value=3.7  Score=40.33  Aligned_cols=150  Identities=11%  Similarity=0.106  Sum_probs=83.7

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEe----CC---eEEEE---EcC--C
Q 001352          900 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ET---HLAIY---EAE--E  967 (1093)
Q Consensus       900 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----d~---~i~vw---d~~--~  967 (1093)
                      +.|..+.....|.+|++...+........+.       +.|..++++..|++|++-.    ..   .+++|   +..  .
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~  101 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE  101 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-------hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence            4444445667799999995443332233332       2588999999999999931    22   46665   222  1


Q ss_pred             cceeeeeecCC---------------------CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce-EEEeccccccCC
Q 001352          968 LTCLKQWFPIS---------------------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV-QCRILSTAYLRP 1025 (1093)
Q Consensus       968 ~~~~~~~~~~h---------------------~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~ 1025 (1093)
                      ...++.-..||                     +.++.+++-.|-..-|+.|+ ++.+.+|.+..... ..++...++...
T Consensus       102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~  180 (215)
T PF14761_consen  102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERS  180 (215)
T ss_pred             CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhh
Confidence            22222222232                     34555666666433445454 56899998876655 332322233221


Q ss_pred             C-CCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352         1026 T-TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus      1026 ~-~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
                      - .|...+.+..+++.   +.++|.. .+-.++++++
T Consensus       181 l~~~~~~~~p~~v~ic---~~yiA~~-s~~ev~Vlkl  213 (215)
T PF14761_consen  181 LIDHIDNFKPTQVAIC---EGYIAVM-SDLEVLVLKL  213 (215)
T ss_pred             hhheecCceEEEEEEE---eeEEEEe-cCCEEEEEEE
Confidence            1 23445667677776   3566655 4556677665

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.39  E-value=2.4  Score=45.66  Aligned_cols=146  Identities=8%  Similarity=0.049  Sum_probs=89.0

Q ss_pred             CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc--ceeeec-ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001352          846 TATSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ  922 (1093)
Q Consensus       846 ~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~--~~~~~l-~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~  922 (1093)
                      ..+.+-|.. .++.|+ +...|.+.=|-....  ...-.+ ....++|.++.||+|.+.||.--.|.+|.+.+....+..
T Consensus        24 esngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~  101 (657)
T KOG2377|consen   24 ESNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ  101 (657)
T ss_pred             cccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence            345566654 344444 333444555554422  111122 235679999999999999999999999999999654422


Q ss_pred             eeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEe
Q 001352          923 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF  998 (1093)
Q Consensus       923 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~  998 (1093)
                      .........+.    ..|....|+.. .-+|...+..+.+|....-.........|...|.-..|.++-+.++-++
T Consensus       102 l~~~~~ck~k~----~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  102 LEYTQECKTKN----ANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             hHHHHHhccCc----ceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            21111111111    24788888877 6667666777777776544333333556777888888888887655443

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.04  E-value=10  Score=40.30  Aligned_cols=189  Identities=10%  Similarity=0.046  Sum_probs=102.8

Q ss_pred             eeEEEEccCCCEEEEEe-----C--------CeEEEEEccCceeEEEECCC------CCCeEEEEEcCCCC----CEEEE
Q 001352          806 VPCFALSKNDAYLFSAS-----G--------GVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAI  862 (1093)
Q Consensus       806 v~~l~~s~dg~~la~~~-----d--------g~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~----~~las  862 (1093)
                      |..+...+++++-+.=+     .        -+|.+||+.+.+.++++.-+      .+....+.+...++    .++..
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence            45566666666555421     1        25889999999988876532      34567777765222    34444


Q ss_pred             Ee-CCCeEEEEEcCCcceeeecccc-------------------cCCeEEEEEeC---CCCEEEEEeCCCcEEEEeCCCC
Q 001352          863 GM-DDSTILIYNARSSEVISKLEGH-------------------SKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGW  919 (1093)
Q Consensus       863 g~-~dg~i~iwd~~~~~~~~~l~~h-------------------~~~V~~l~~s~---dg~~l~s~s~dg~i~iwd~~~~  919 (1093)
                      .. ..+.|.|+|+.+++.-+.+..+                   .+.+..++.+|   |+++|.-....+ -++|.+.+.
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~  161 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS  161 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence            43 3458999999988754444322                   12355666655   666666555444 345554432


Q ss_pred             ceeeee---------eeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcc---eeeeee-cCC-CCCEEE
Q 001352          920 GIQTCR---------SLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT---CLKQWF-PIS-SVPISQ  984 (1093)
Q Consensus       920 ~~~~~~---------~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~---~~~~~~-~~h-~~~v~~  984 (1093)
                      ......         .++.. +...  .....++++++|.+..+ ...+.|..|+..+.-   ....+. ... -..+..
T Consensus       162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~  238 (287)
T PF03022_consen  162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG  238 (287)
T ss_dssp             HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred             HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence            111100         00110 0000  13567899999998888 578899999988621   112222 222 357788


Q ss_pred             EEEcc--CCCEEEEEe
Q 001352          985 ATFSC--DCRMVFTSF  998 (1093)
Q Consensus       985 ~~fs~--dg~~l~t~~  998 (1093)
                      +.+.+  +|.+.+.+.
T Consensus       239 ~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  239 LKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             EEE-T--TS-EEEEE-
T ss_pred             eeeccccCceEEEEEC
Confidence            88988  787766653

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PHA03098 kelch-like protein; Provisional

Probab=93.03  E-value=2.9  Score=49.62  Aligned_cols=195  Identities=11%  Similarity=0.008  Sum_probs=89.9

Q ss_pred             CCCEEEEEEcCC------EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-----CcEEEEECCCC
Q 001352          408 DGSLLGVAYSKH------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG  476 (1093)
Q Consensus       408 dg~~las~~~d~------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~  476 (1093)
                      ++..++.|+.++      .+..||..+++-.. ...+.........+  .-+++  +++.||.+     ..+..||..++
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~--~~~~~--lyv~GG~~~~~~~~~v~~yd~~~~  368 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVT--VFNNR--IYVIGGIYNSISLNTVESWKPGES  368 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEE--EECCE--EEEEeCCCCCEecceEEEEcCCCC
Confidence            455666665432      47788887754321 11111111111222  22455  56666654     35778888776


Q ss_pred             ceeEE--eecCCCCeEEeeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001352          477 SRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  548 (1093)
Q Consensus       477 ~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~  548 (1093)
                      +....  +...... .+++.  . ++.+.+.|+.+      +.+..||..+.+-...-..+.......+...+++..+.|
T Consensus       369 ~W~~~~~lp~~r~~-~~~~~--~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~G  444 (534)
T PHA03098        369 KWREEPPLIFPRYN-PCVVN--V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIG  444 (534)
T ss_pred             ceeeCCCcCcCCcc-ceEEE--E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEEC
Confidence            54321  1111111 11111  1 44566666632      357788876543221111111111112233456666666


Q ss_pred             ecCCCC----ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceE
Q 001352          549 GTSKEG----ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLL  614 (1093)
Q Consensus       549 ~~~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~  614 (1093)
                      +.....    -..+.+||..+++....-.... .......+.+  ++..++.|+.+     +.+.+||..+.+..
T Consensus       445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  516 (534)
T PHA03098        445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNF-PRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWT  516 (534)
T ss_pred             CccCCCCCcccceEEEecCCCCceeeCCCCCc-ccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence            543221    1348899988776543221111 0111222222  55566666643     46788888776653

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.76  E-value=14  Score=38.41  Aligned_cols=206  Identities=13%  Similarity=0.102  Sum_probs=116.4

Q ss_pred             eeEEEEccCCCEEEEEe-CCeEEEEEcc------Cc-eeEEEECC-----CCCCeEEEEEcCCCCCE------------E
Q 001352          806 VPCFALSKNDAYLFSAS-GGVISLYIVM------TF-KTILTIMP-----PSPTATSLAFNPHDNNV------------I  860 (1093)
Q Consensus       806 v~~l~~s~dg~~la~~~-dg~i~iwd~~------~~-~~~~~~~~-----~~~~i~~l~~s~~d~~~------------l  860 (1093)
                      -..|+++|.+.+.++.. .+...+||..      .. ..+-.+..     .....+.+.|+. ...+            +
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF  103 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence            45799999998777665 4889999986      11 22333332     123567777764 2222            4


Q ss_pred             EEEeCCCeEEEEEcCCcce-----eeecc-cccCCeE-EEEEeCC--CCEE-EEEeCCCcEEEEeCCCCceeeeeee---
Q 001352          861 AIGMDDSTILIYNARSSEV-----ISKLE-GHSKRVT-GLVFSDA--LNIL-VSSGGDAQIFVWDVDGWGIQTCRSL---  927 (1093)
Q Consensus       861 asg~~dg~i~iwd~~~~~~-----~~~l~-~h~~~V~-~l~~s~d--g~~l-~s~s~dg~i~iwd~~~~~~~~~~~~---  927 (1093)
                      +.+++||+|.=|...-+..     ...+. ...+.|. .+++...  +.+| ++--..++|.++|-.-.+....-..   
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            5678999999998543221     11222 1123333 4555533  3444 4445678899997654321110000   


Q ss_pred             ecCCCcccCCCCceEEEEccCCCEEEE-E-------------eCCeEEEEEcCCcceeeeeec-CCCCCEEEEEEcc---
Q 001352          928 QTPDGVMTLAPSETHIQFHKDQTRFLL-V-------------HETHLAIYEAEELTCLKQWFP-ISSVPISQATFSC---  989 (1093)
Q Consensus       928 ~~~~~~~~~~~~v~~~~~s~dg~~l~~-~-------------~d~~i~vwd~~~~~~~~~~~~-~h~~~v~~~~fs~---  989 (1093)
                      ..+.+...  -.|.    .-.+++.++ .             .-|.|-+||+. |..++++.. +.-...+.|+..|   
T Consensus       184 ~iPagyAP--FnIq----nig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~F  256 (336)
T TIGR03118       184 ALPAGYAP--FNVQ----NLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESF  256 (336)
T ss_pred             CCCCCCCC--cceE----EECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhh
Confidence            00111110  0011    112333332 1             23579999975 666665432 2334556677754   


Q ss_pred             ---CCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001352          990 ---DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1019 (1093)
Q Consensus       990 ---dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 1019 (1093)
                         .|.+|+---.||+|..+|..+|+.+..+..
T Consensus       257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~  289 (336)
T TIGR03118       257 GSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD  289 (336)
T ss_pred             CCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence               678888777899999999999998877774

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.68  E-value=3.4  Score=46.01  Aligned_cols=151  Identities=15%  Similarity=0.064  Sum_probs=83.4

Q ss_pred             CCeEEEEEcCCCCCEEEEEe-----------CCC-eEEEEEcCC--cce--eeecccccCCeEEEEEeCCCCEEEEEeCC
Q 001352          845 PTATSLAFNPHDNNVIAIGM-----------DDS-TILIYNARS--SEV--ISKLEGHSKRVTGLVFSDALNILVSSGGD  908 (1093)
Q Consensus       845 ~~i~~l~~s~~d~~~lasg~-----------~dg-~i~iwd~~~--~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~d  908 (1093)
                      .....++|.+ +|+++++-.           ..+ .|.+++-.+  |+.  ...+.........+++.++| +++ ++..
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP   90 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence            4567889998 787776542           223 677776543  332  23343333456889999998 555 4445


Q ss_pred             CcEEEEeCCCCc-e--eeeeeeecCCCc-ccCCCCceEEEEccCCCEEEE-EeC-------------------CeEEEEE
Q 001352          909 AQIFVWDVDGWG-I--QTCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLL-VHE-------------------THLAIYE  964 (1093)
Q Consensus       909 g~i~iwd~~~~~-~--~~~~~~~~~~~~-~~~~~~v~~~~~s~dg~~l~~-~~d-------------------~~i~vwd  964 (1093)
                      ...++.+.+... .  ....++..+... .........++|.|||.+.++ +..                   +.+.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            433444554321 1  111223322221 001124778999999988776 411                   3455555


Q ss_pred             cCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCC
Q 001352          965 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 1000 (1093)
Q Consensus       965 ~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~d 1000 (1093)
                      ..+++ +..+..+ -.....++|+++|.++++-..+
T Consensus       171 pdg~~-~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       171 PDGGK-LRVVAHG-FQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             cCCCe-EEEEecC-cCCCccceECCCCCEEEEccCC
Confidence            55443 2333333 3445689999999988765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.61  E-value=9.3  Score=44.46  Aligned_cols=164  Identities=12%  Similarity=0.140  Sum_probs=79.6

Q ss_pred             CeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccce-EEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352          399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  477 (1093)
Q Consensus       399 ~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  477 (1093)
                      .+..+.||.+..+|+ ...+|+++||++.... +... .........|..+.|..+|=  .+.+.  +|.+.+-+-....
T Consensus        85 ~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~~  158 (829)
T KOG2280|consen   85 ELIGMGWSDDEELIC-VQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEEP  158 (829)
T ss_pred             CeeeecccCCceEEE-EeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCcc
Confidence            888999998776554 5699999999987532 2211 01122333566666666553  33333  3444443312221


Q ss_pred             eeEEeec-CCCCeEEeeecccCC---ccEEEEEe-cCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001352          478 RTYSFEG-HGAPVYSLCPHAKEN---IHFIFSIS-VDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  551 (1093)
Q Consensus       478 ~~~~~~~-h~~~v~~~~~~~~~~---~~~l~s~~-~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~  551 (1093)
                      .+++++. ........||.-..+   ...++-.. ..+ ..++-... ......+......+..+++||+.++|+.-.. 
T Consensus       159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~-  236 (829)
T KOG2280|consen  159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE-  236 (829)
T ss_pred             hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec-
Confidence            2222221 000111112211111   11111111 000 01111111 1122233334467888999999999998765 


Q ss_pred             CCCceeEEEEeCCCCeeeeeee
Q 001352          552 KEGESFLVEWNESEGAIKRTYQ  573 (1093)
Q Consensus       552 ~~~~~~i~iwd~~~~~~~~~~~  573 (1093)
                         .|.|.+-+....+....+.
T Consensus       237 ---~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  237 ---TGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             ---CCcEEEEecchhhhhhccC
Confidence               5557777777666665555

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.45  E-value=1.9  Score=52.03  Aligned_cols=146  Identities=8%  Similarity=0.052  Sum_probs=95.1

Q ss_pred             CCCeeEEEEccCCCEEEEEe--C-CeEEEEEccCceeEE-----EECCC------CCCeEEEEEcCCCCCEEEEEeCCCe
Q 001352          803 QEAVPCFALSKNDAYLFSAS--G-GVISLYIVMTFKTIL-----TIMPP------SPTATSLAFNPHDNNVIAIGMDDST  868 (1093)
Q Consensus       803 ~~~v~~l~~s~dg~~la~~~--d-g~i~iwd~~~~~~~~-----~~~~~------~~~i~~l~~s~~d~~~lasg~~dg~  868 (1093)
                      ...+..++..+|+...++..  + -.|..||+.+...-.     .+..|      .....++.|.|.=-...|+...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            44566777788877666654  3 358899987543221     12211      2344677788743445566778999


Q ss_pred             EEEEEcCCcc-eeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEcc
Q 001352          869 ILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK  947 (1093)
Q Consensus       869 i~iwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  947 (1093)
                      |++..+.-.. .+..+. -...+++++|||.|+.++.|-..|++.-|........   .+..+....  ..+|.+++|-.
T Consensus       180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence            9988775432 223333 4567899999999999999999999998876653211   222222222  24799999999


Q ss_pred             CCCEEEE
Q 001352          948 DQTRFLL  954 (1093)
Q Consensus       948 dg~~l~~  954 (1093)
                      .-.++++
T Consensus       254 t~eflvv  260 (1405)
T KOG3630|consen  254 TQEFLVV  260 (1405)
T ss_pred             ceeEEEE
Confidence            9888887

>PHA02790 Kelch-like protein; Provisional

Probab=92.43  E-value=5.7  Score=46.14  Aligned_cols=184  Identities=11%  Similarity=-0.008  Sum_probs=92.8

Q ss_pred             CCCEEEEEe-C-----CeEEEEEccCceeEE--EECCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCcc--eee
Q 001352          814 NDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSE--VIS  881 (1093)
Q Consensus       814 dg~~la~~~-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~i~iwd~~~~~--~~~  881 (1093)
                      ++.++++|+ +     ..+..||..+.+-..  .+.........++  - ++.+.++|+.++  .+..||..+++  .+.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence            455556654 2     246778877654322  2221111222222  3 677888888643  68888876543  222


Q ss_pred             ecccccCCeEEEEEeCCCCEEEEEeCCC---cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCC
Q 001352          882 KLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET  958 (1093)
Q Consensus       882 ~l~~h~~~V~~l~~s~dg~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~  958 (1093)
                      .+.........+  .-+|+..+.||.++   .+..||..+++-.....+..+        .....+..-+|++.+.|  |
T Consensus       348 ~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~--------r~~~~~~~~~~~IYv~G--G  415 (480)
T PHA02790        348 SLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP--------HYKSCALVFGRRLFLVG--R  415 (480)
T ss_pred             CCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc--------cccceEEEECCEEEEEC--C
Confidence            332111111222  23678888888654   467888876543221111111        11122334566666665  4


Q ss_pred             eEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCce
Q 001352          959 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 1013 (1093)
Q Consensus       959 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~d-----g~v~vwd~~~~~~ 1013 (1093)
                      .+.+||..+++-...-...+...-.++ ..-+|+..+.||.+     .+|..||..+++.
T Consensus       416 ~~e~ydp~~~~W~~~~~m~~~r~~~~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W  474 (480)
T PHA02790        416 NAEFYCESSNTWTLIDDPIYPRDNPEL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW  474 (480)
T ss_pred             ceEEecCCCCcEeEcCCCCCCccccEE-EEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence            577899877654322111111111122 23477888888764     3466677666543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.36  E-value=14  Score=39.23  Aligned_cols=167  Identities=11%  Similarity=0.078  Sum_probs=90.5

Q ss_pred             cEEEEECCCCceeEEeecC------CCCeEEeeecccCC----ccEEEEEecCCeEEEEEcCCCCceEEecCCC------
Q 001352          467 TIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAPG------  530 (1093)
Q Consensus       467 ~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------  530 (1093)
                      .|.+||+.+++.++++.-.      .+.+..+.+...+.    +...++-+..+.|.|+|+.+++.........      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            5888999999988876432      34566777755332    2334444455689999998876655433211      


Q ss_pred             -------------CceEEEEEcc---CCCEEEEEecCCCCceeEEEEeCCCC-----ee---------eeeeecccccCC
Q 001352          531 -------------LGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEG-----AI---------KRTYQGLQLQHN  580 (1093)
Q Consensus       531 -------------~~v~~~~~s~---d~~~l~~~~~~~~~~~~i~iwd~~~~-----~~---------~~~~~~~~~~~~  580 (1093)
                                   ..+..++.+|   +++.|+.....+     -.+|.+.+.     ..         ++.+ +..  ..
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~  186 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS  186 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence                         1245566654   666666554322     122322211     00         1111 111  13


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eEEEEec-CCCCCCCceEEEec--CCCEEEEE
Q 001352          581 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---LLTTIDA-GGGLPENPRICFNK--NGTLLAVI  641 (1093)
Q Consensus       581 ~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~~~~v~~v~~s~--~~~~l~~~  641 (1093)
                      ....++++++|..+++--..+.|..|+..+.-   ....+.. ......+..+.+.+  +|.+.+..
T Consensus       187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            55678889988888888899999999987621   2222222 22234456777777  55544443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=92.26  E-value=24  Score=39.92  Aligned_cols=272  Identities=16%  Similarity=0.097  Sum_probs=136.7

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  416 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~  416 (1093)
                      .|.++.+.-.|.  +-.|+.|| +..+|..+|+.+....                  .....+|.++.-+-.| .|.+|+
T Consensus       166 ~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg-~LWVGT  223 (671)
T COG3292         166 PVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQG-RLWVGT  223 (671)
T ss_pred             cceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcC-cEEEEe
Confidence            889999999997  45566666 6677888877665311                  0111455555544444 566777


Q ss_pred             cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe-ecCC--CCeEEee
Q 001352          417 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHG--APVYSLC  493 (1093)
Q Consensus       417 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~h~--~~v~~~~  493 (1093)
                      .+| |.+.+.++.+....  -..-..+.|..+.=..+|.   +-.|+..|..+. ....+...... +-|.  ..|.++.
T Consensus       224 dqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~  296 (671)
T COG3292         224 DQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLW  296 (671)
T ss_pred             ccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCcccccccee
Confidence            787 88887776321110  0111233455554444454   455555553322 33333322222 2121  2233333


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeeeee
Q 001352          494 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRT  571 (1093)
Q Consensus       494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  571 (1093)
                      .  +.+| -+-+++.+|.+++-+-+-..........+..+...+..|  .+..+-....    .+.+.+-+..+|..++.
T Consensus       297 ~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns----~g~L~van~stG~~v~s  369 (671)
T COG3292         297 L--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS----IGELMVANGSTGELVRS  369 (671)
T ss_pred             e--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc----cceEEEecCCCCcEEEE
Confidence            3  3333 466677777666543221111111111111121222222  1111111111    23355666677777666


Q ss_pred             eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001352          572 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  649 (1093)
Q Consensus       572 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  649 (1093)
                      .....  ...|+.+++.. +..+-.|+...-+..|+.++ +........ -..++|..+.=.|+++ |..|+.+|-++.
T Consensus       370 v~q~R--g~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~ag-l~ss~V~aived~dns-LWIGTs~Glvk~  443 (671)
T COG3292         370 VHQLR--GMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAG-LPSSEVSAIVEDPDNS-LWIGTSGGLVKR  443 (671)
T ss_pred             eeecc--ccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccC-CcccceeeeeecCCCC-EEEeccCCeEec
Confidence            44333  35677777776 44566677665577777766 333333222 2234577777778887 788888776554

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.07  E-value=8.2  Score=37.36  Aligned_cols=102  Identities=16%  Similarity=0.115  Sum_probs=62.2

Q ss_pred             CCCEEEEEe---CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCe
Q 001352          814 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV  890 (1093)
Q Consensus       814 dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V  890 (1093)
                      +|+++.+.+   ...|++||+.+|+.+..-.-....+..=-...-+..+.+-...+|.-..+|.++.+++.++. ..+.=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence            556666665   36699999999988776543322221111111023444556778999999999988887665 33444


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352          891 TGLVFSDALNILVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       891 ~~l~~s~dg~~l~s~s~dg~i~iwd~~~  918 (1093)
                      +.++  .|++.|..++...+++.-|-++
T Consensus       134 WgLt--~d~~~LimsdGsatL~frdP~t  159 (262)
T COG3823         134 WGLT--SDDKNLIMSDGSATLQFRDPKT  159 (262)
T ss_pred             eeee--cCCcceEeeCCceEEEecCHHH
Confidence            4444  3666677666566666666554

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.05  E-value=0.14  Score=59.33  Aligned_cols=140  Identities=14%  Similarity=0.083  Sum_probs=80.9

Q ss_pred             CCeEEEEEcCCcc-eeeecccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCC--CceeeeeeeecCCCcccCCCCce
Q 001352          866 DSTILIYNARSSE-VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSET  941 (1093)
Q Consensus       866 dg~i~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d-g~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~  941 (1093)
                      .+.+++-+..+.. ....++|..+.|-.+.|-.. ...++  -.-|.+.||+++-  |++.....+............|.
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~  187 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS  187 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence            3456666655432 22345667778888888431 11122  3346689998874  44333333333222222113444


Q ss_pred             EEEEccCCCEEEEE-eCCeEEEEEcCCcceeeeeecCCCCCEEEEE-----------EccCCCEEEEEeCCCcEEEEEcC
Q 001352          942 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQAT-----------FSCDCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus       942 ~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~-----------fs~dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
                      -+-|-++..++..+ .++.+++....+...  .++.+|+.++..++           .||||+.++++..||.++.|.+.
T Consensus       188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  188 WCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             ecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            55555666666665 445666655543322  33445766666654           48999999999999999999764

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=91.96  E-value=22  Score=39.71  Aligned_cols=201  Identities=12%  Similarity=0.016  Sum_probs=104.5

Q ss_pred             EccCCCEEEEEeCCeEEEEEccCceeEEEECCCC--CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeeccccc-
Q 001352          811 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-  887 (1093)
Q Consensus       811 ~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~-  887 (1093)
                      ...||+.++...+|.|.-.|..+++.+.......  ..+..-.+.. +|+ |+.++.+|.++.+|..+|+.+....... 
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~  142 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS  142 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence            3446776666667888888888887665443221  2333333333 565 6678889999999998899887776554 


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEe--CCeEEEEEc
Q 001352          888 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEA  965 (1093)
Q Consensus       888 ~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--d~~i~vwd~  965 (1093)
                      -.+..-..-.++..++ .+.++.+.-.+-.+++..-....... -..    .+..-....++...+...  ++.+.-.|.
T Consensus       143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~-~~~----~~~~~~~~~~~~vy~~~~~~~~~~~a~~~  216 (370)
T COG1520         143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAP-LSL----SIYGSPAIASGTVYVGSDGYDGILYALNA  216 (370)
T ss_pred             eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCc-ccc----ccccCceeecceEEEecCCCcceEEEEEc
Confidence            1122222222332222 22556666666665543221111110 000    011111133344333333  445666677


Q ss_pred             CCcceeeeeecCCCCC---EEEEEEcc-----CCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001352          966 EELTCLKQWFPISSVP---ISQATFSC-----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1019 (1093)
Q Consensus       966 ~~~~~~~~~~~~h~~~---v~~~~fs~-----dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 1019 (1093)
                      .+|...-.....+...   +.......     .+.-+..++.++.+.-.+..+|+.+.++..
T Consensus       217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            7777665522111111   10011111     112235566778788889999999888774

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.91  E-value=0.32  Score=56.50  Aligned_cols=165  Identities=16%  Similarity=0.145  Sum_probs=91.3

Q ss_pred             CCCCeeEEEEccCC-CEEEEEeC-CeEEEEEcc--CceeEEE-----ECCCCCCeEEEEEcCC--CCCEEEEEeCCCeEE
Q 001352          802 SQEAVPCFALSKND-AYLFSASG-GVISLYIVM--TFKTILT-----IMPPSPTATSLAFNPH--DNNVIAIGMDDSTIL  870 (1093)
Q Consensus       802 ~~~~v~~l~~s~dg-~~la~~~d-g~i~iwd~~--~~~~~~~-----~~~~~~~i~~l~~s~~--d~~~lasg~~dg~i~  870 (1093)
                      ..+.+..+.|..-. ..++  .+ |.+.|||+.  .|+....     .......+.-+.|.|.  +..++..+..+++|+
T Consensus       131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~  208 (1283)
T KOG1916|consen  131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIR  208 (1283)
T ss_pred             CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCcee
Confidence            44555556654321 1111  22 678888875  3443322     2223334444555441  456777888889998


Q ss_pred             EEEcCCcceeeecccccCCeEEEE-----------EeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCC
Q 001352          871 IYNARSSEVISKLEGHSKRVTGLV-----------FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS  939 (1093)
Q Consensus       871 iwd~~~~~~~~~l~~h~~~V~~l~-----------~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  939 (1093)
                      +.+..+... ..+.+|+..++.++           .||||+.+|.++.||.++.|.+.--.....+++..-..|..  .+
T Consensus       209 lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p  285 (1283)
T KOG1916|consen  209 LLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HP  285 (1283)
T ss_pred             EeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CC
Confidence            877664332 45566877766654           58999999999999999999875322222233333333332  12


Q ss_pred             ceEEEEccCC-------C--EEEEEeC--CeEEEEEcCCccee
Q 001352          940 ETHIQFHKDQ-------T--RFLLVHE--THLAIYEAEELTCL  971 (1093)
Q Consensus       940 v~~~~~s~dg-------~--~l~~~~d--~~i~vwd~~~~~~~  971 (1093)
                      -.|.-|...-       .  +++++.|  ..+++|.....+|+
T Consensus       286 ~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  286 RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            2222233221       1  2233333  45888887776665

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.84  E-value=22  Score=38.73  Aligned_cols=164  Identities=12%  Similarity=0.089  Sum_probs=89.6

Q ss_pred             CCCeEEEEEcCCCCCEEEEEeCCCe------EEEEEcCC--c--ce-----eeecccccC--------CeEEEEEeCCCC
Q 001352          844 SPTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EV-----ISKLEGHSK--------RVTGLVFSDALN  900 (1093)
Q Consensus       844 ~~~i~~l~~s~~d~~~lasg~~dg~------i~iwd~~~--~--~~-----~~~l~~h~~--------~V~~l~~s~dg~  900 (1093)
                      -+.+..+++.+++++ +++.+.+|.      +..+++..  +  ..     ...+..-.+        ..-+|++.++|.
T Consensus        19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            356788888863454 444566666      65555543  1  00     111111111        344788888888


Q ss_pred             EEEEEeCC------CcEEEEeCCCCceeeeeeeecCC-------CcccCCCCceEEEEccCCCEEEEE------eCC---
Q 001352          901 ILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV------HET---  958 (1093)
Q Consensus       901 ~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~l~~~------~d~---  958 (1093)
                      ++++.=.+      ..|..++.+ +.......+...-       ..........+++++|||+.|.+.      .|+   
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            88887666      778888876 3332211111100       112223578999999999955442      222   


Q ss_pred             --------eEEEEEcCC-cceeeee--ecC------CCCCEEEEEEccCCCEEEEEe-----CCCcEEEEEcC
Q 001352          959 --------HLAIYEAEE-LTCLKQW--FPI------SSVPISQATFSCDCRMVFTSF-----VDGTLSIHEAS 1009 (1093)
Q Consensus       959 --------~i~vwd~~~-~~~~~~~--~~~------h~~~v~~~~fs~dg~~l~t~~-----~dg~v~vwd~~ 1009 (1093)
                              .|..||..+ +.....+  ...      ....|+.+.+-+|+++|+.-=     ....++|+.+.
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence                    234455554 3222221  111      356889999999999877321     23455665554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.74  E-value=28  Score=39.63  Aligned_cols=58  Identities=12%  Similarity=0.066  Sum_probs=42.3

Q ss_pred             EEEEccCCCEEEEEeC--CeEEEEEcCCcc--eeeeeecCCCCCEEEEEEccCCCEEEEEeC
Q 001352          942 HIQFHKDQTRFLLVHE--THLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFV  999 (1093)
Q Consensus       942 ~~~~s~dg~~l~~~~d--~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~  999 (1093)
                      -+||.|....+|++++  +.|.||.+....  .+.++......+...++|-.|+-+|+..|.
T Consensus       343 liAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGk  404 (671)
T PF15390_consen  343 LIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGK  404 (671)
T ss_pred             eeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecc
Confidence            4799999999999654  579999986432  233333344678889999999887776664

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.49  E-value=11  Score=37.23  Aligned_cols=111  Identities=12%  Similarity=0.190  Sum_probs=67.6

Q ss_pred             eeEEEEccCCCEEEEEeCCeEEEEEcc--CceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC------eEEEE---Ec
Q 001352          806 VPCFALSKNDAYLFSASGGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS------TILIY---NA  874 (1093)
Q Consensus       806 v~~l~~s~dg~~la~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg------~i~iw---d~  874 (1093)
                      ...++-++.+.++++++...|.+|++.  ..+...+|.. -+.|..++++. .|++|+|--.+.      .+|+|   ..
T Consensus        20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~   97 (215)
T PF14761_consen   20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRS   97 (215)
T ss_pred             cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhh
Confidence            344555554555565677889999988  3455666663 37899999999 899999854332      45554   33


Q ss_pred             C--Cccee-eecccc---------------------cCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 001352          875 R--SSEVI-SKLEGH---------------------SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW  919 (1093)
Q Consensus       875 ~--~~~~~-~~l~~h---------------------~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~  919 (1093)
                      .  ..+.+ .++.||                     +.++.+++-.|-..-|+.|+ ++.+.+|.+...
T Consensus        98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen   98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence            2  11111 122232                     23566677666444444444 456999988763

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.41  E-value=20  Score=37.32  Aligned_cols=214  Identities=12%  Similarity=0.128  Sum_probs=121.2

Q ss_pred             cEEEEEeeCCCCcEEEEEEcCCCcEEEEECC------CC-ceeEEeec-----CCCCeEEeeecccC------Cc----c
Q 001352          444 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TG-SRTYSFEG-----HGAPVYSLCPHAKE------NI----H  501 (1093)
Q Consensus       444 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~------~~-~~~~~~~~-----h~~~v~~~~~~~~~------~~----~  501 (1093)
                      .-+-++|+|.+.  +-++...-+...+||..      .. ..+-++..     .....+.+.|+...      ++    .
T Consensus        24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS  101 (336)
T ss_pred             ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence            457899999887  56666677889999976      12 22333332     12345555554221      11    2


Q ss_pred             EEEEEecCCeEEEEEcCCCCc-----eEEecCC--CCceEEEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeee--e
Q 001352          502 FIFSISVDGKIKAWLYDSLGA-----RVDYDAP--GLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIK--R  570 (1093)
Q Consensus       502 ~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~--~~~v~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~~~--~  570 (1093)
                      .++.+++||+|.-|...-...     ...+...  ..-...+++..  .+.+|+.+-.   ..++|.++|-.=....  .
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g  178 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG  178 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence            468889999999997532222     1222211  22334555543  3566666543   2566888875422211  0


Q ss_pred             eeeccccc--CCC-----------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec----
Q 001352          571 TYQGLQLQ--HNS-----------VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK----  633 (1093)
Q Consensus       571 ~~~~~~~~--~~~-----------v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~----  633 (1093)
                      .+......  -.+           |+...-.++...=+.|..-|.|-+||. .|.+++++...+....-+.++..|    
T Consensus       179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG  257 (336)
T ss_pred             CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence            11111000  000           111111222222233445578999997 578888886655555566777755    


Q ss_pred             --CCCEEEEEECCCeEEEEEcCCCceeeeccc
Q 001352          634 --NGTLLAVIANENRIKILETPESNSVDAAGV  663 (1093)
Q Consensus       634 --~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  663 (1093)
                        .|.+|+---.||+|..+|..+++.+..+..
T Consensus       258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~  289 (336)
T TIGR03118       258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD  289 (336)
T ss_pred             CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence              467777777799999999998887766664

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.28  E-value=28  Score=38.84  Aligned_cols=150  Identities=9%  Similarity=-0.007  Sum_probs=83.1

Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcc
Q 001352          890 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT  969 (1093)
Q Consensus       890 V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~  969 (1093)
                      ...+..++||.+++.+..-..++-||-....   ...+.....     ..++++.|.+++.+++++..|.+.. ....+.
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~~~~~-----~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~  311 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHNRASA-----RRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL  311 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEecCCCc-----cceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence            4445677888777765544333334433210   011222211     2588999999999999887777544 334443


Q ss_pred             -----eeeeeecC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCC
Q 001352          970 -----CLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1043 (1093)
Q Consensus       970 -----~~~~~~~~-h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1043 (1093)
                           ........ ....+.++.|.+|+..+++ +..|.+... .+.|+.-.+.......+.     .++  .+.|.+  
T Consensus       312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s-~D~G~tW~~~~~~~~~~~-----~ly--~v~f~~--  380 (398)
T PLN00033        312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS-TDGGKSWKRDKGADNIAA-----NLY--SVKFFD--  380 (398)
T ss_pred             cccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-CCCCcceeEccccCCCCc-----cee--EEEEcC--
Confidence                 12211111 1245889999988876665 567866554 455554333321111122     244  566664  


Q ss_pred             CCEEEEEeCCCcEEEE
Q 001352         1044 PTQFAVGLTNGEVYVI 1059 (1093)
Q Consensus      1044 ~~~l~~~~~dg~v~~w 1059 (1093)
                      .+...+.+.+|.|.-|
T Consensus       381 ~~~g~~~G~~G~il~~  396 (398)
T PLN00033        381 DKKGFVLGNDGVLLRY  396 (398)
T ss_pred             CCceEEEeCCcEEEEe
Confidence            3567777788887655

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.24  E-value=8.3  Score=34.70  Aligned_cols=122  Identities=13%  Similarity=0.051  Sum_probs=69.1

Q ss_pred             eeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-----CCCEEEE
Q 001352          340 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGSLLGV  414 (1093)
Q Consensus       340 ~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-----dg~~las  414 (1093)
                      .-.|..... -|++++.-|+|.|.+..........    +     .....   +-.-...|++++-.+     +...|+.
T Consensus         3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~----~-----~~~i~---~LNin~~italaaG~l~~~~~~D~Lli   69 (136)
T PF14781_consen    3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR----Q-----DSDIS---FLNINQEITALAAGRLKPDDGRDCLLI   69 (136)
T ss_pred             EEEeCCCce-eEEEEecCCEEEEECCCcccccccc----c-----cCcee---EEECCCceEEEEEEecCCCCCcCEEEE
Confidence            345555555 3777788899999998654322110    0     00000   112346777776433     3456777


Q ss_pred             EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC---CCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352          415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSRTYS  481 (1093)
Q Consensus       415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~~d~~i~vwd~~~~~~~~~  481 (1093)
                      |+.. .+..||++....+.    .+.-.+.|.++.+-.-   ... +++.| .+..|.-+|.+..+...+
T Consensus        70 Gt~t-~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~-l~ivG-Gncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   70 GTQT-SLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSP-LVIVG-GNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             eccc-eEEEEEcccCchhh----hhhCccceeEEEEEecCCCCCc-EEEEC-ceEEEEEeCCCCcEEEEE
Confidence            7655 59999999876543    2344566777777321   121 44444 477888888554444333

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.15  E-value=5.8  Score=46.81  Aligned_cols=173  Identities=13%  Similarity=0.116  Sum_probs=91.7

Q ss_pred             CCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEE
Q 001352          815 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV  894 (1093)
Q Consensus       815 g~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~  894 (1093)
                      +.+++++..+.|.||+........    ...+...+...|   .+  +...|+.+..|.          ..|.  |..|.
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PHt--IN~i~  107 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP----------FPHT--INFIK  107 (717)
T ss_pred             CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC----------CCce--eeEEE
Confidence            788888999999999986432211    011112222222   11  122233232222          1121  22222


Q ss_pred             Ee--CCCCEEEEEeCCCcEEEEeCCCCc-----e----e--eeeeeecCCCcccCCCCceEEEEc--cCCCEEEEEeCC-
Q 001352          895 FS--DALNILVSSGGDAQIFVWDVDGWG-----I----Q--TCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHET-  958 (1093)
Q Consensus       895 ~s--~dg~~l~s~s~dg~i~iwd~~~~~-----~----~--~~~~~~~~~~~~~~~~~v~~~~~s--~dg~~l~~~~d~-  958 (1093)
                      ..  -+...|+.+.+||.|.+|.++.=.     .    .  ..+..-.+.-+......++++++.  ...++||+++++ 
T Consensus       108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~  187 (717)
T PF08728_consen  108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ  187 (717)
T ss_pred             ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence            22  244677778888888888653200     0    0  000000011111122468899998  888999997554 


Q ss_pred             eEEEEEcCC--cceeeeeecCCCCCEEEEEEccCC---C---EEEEEeCCCcEEEEEc
Q 001352          959 HLAIYEAEE--LTCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEA 1008 (1093)
Q Consensus       959 ~i~vwd~~~--~~~~~~~~~~h~~~v~~~~fs~dg---~---~l~t~~~dg~v~vwd~ 1008 (1093)
                      .|.||-...  .+....-...|...|-+|.|-++.   .   +|++++-.|.+.+|++
T Consensus       188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            566654433  222111111256688899997743   2   7888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.12  E-value=1.1  Score=48.15  Aligned_cols=122  Identities=11%  Similarity=0.153  Sum_probs=82.4

Q ss_pred             CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEE
Q 001352          335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  414 (1093)
Q Consensus       335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las  414 (1093)
                      .++|.++.||+|.+ ++|+--.+++|.+.+....+.......+               .+..+..|....|+.+ .-+|.
T Consensus        66 ~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~---------------ck~k~~~IlGF~W~~s-~e~A~  128 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQE---------------CKTKNANILGFCWTSS-TEIAF  128 (657)
T ss_pred             CCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHH---------------hccCcceeEEEEEecC-eeEEE
Confidence            45999999999998 6999989999999998544333211110               1223456888999866 77777


Q ss_pred             EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC
Q 001352          415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  476 (1093)
Q Consensus       415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  476 (1093)
                      .+..| +-+|-+...+  +.....+.|...|..-.|.++.+-.+|+|+-..+++.=+-+.++
T Consensus       129 i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  129 ITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             EecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            77777 7888776543  22334567889999999999988544444434444444444444

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=90.96  E-value=32  Score=38.92  Aligned_cols=72  Identities=14%  Similarity=0.147  Sum_probs=48.5

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  475 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  475 (1093)
                      ...+|.++.+...|. |-+|+.|| +..||..+++.+..  .......+|..+.-+-.|+   +..|+.+| |.+.+.+.
T Consensus       163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql--~s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G  234 (671)
T COG3292         163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQL--ASPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG  234 (671)
T ss_pred             cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEc--CCCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence            346788899988885 45677888 88888888764432  1122335677777777776   67777665 77777554

>PHA02790 Kelch-like protein; Provisional

Probab=90.96  E-value=9.2  Score=44.41  Aligned_cols=148  Identities=9%  Similarity=-0.026  Sum_probs=71.8

Q ss_pred             CccEEEEEecC--CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc
Q 001352          499 NIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  576 (1093)
Q Consensus       499 ~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  576 (1093)
                      ++.+.+.|+.+  ..+..||..+..-...-..+.......+..-+|+..+.|+.+.. ...+..||..+.+-...-.-..
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~  396 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYY  396 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCC
Confidence            44566666654  35777776543221111111111122223346776677665332 3557889988765543211111


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC-----CeEEEEE
Q 001352          577 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILE  651 (1093)
Q Consensus       577 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~  651 (1093)
                       .......+.  -++...+.|   |.+.+||..+++....-+.....  ...-+.--+|+..++|+.+     ..+..||
T Consensus       397 -~r~~~~~~~--~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r--~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd  468 (480)
T PHA02790        397 -PHYKSCALV--FGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPR--DNPELIIVDNKLLLIGGFYRGSYIDTIEVYN  468 (480)
T ss_pred             -ccccceEEE--ECCEEEEEC---CceEEecCCCCcEeEcCCCCCCc--cccEEEEECCEEEEECCcCCCcccceEEEEE
Confidence             001112222  234444445   35778999887765443322211  1122223367777777754     3466677


Q ss_pred             cCCC
Q 001352          652 TPES  655 (1093)
Q Consensus       652 ~~~~  655 (1093)
                      ..++
T Consensus       469 ~~~~  472 (480)
T PHA02790        469 NRTY  472 (480)
T ss_pred             CCCC
Confidence            6654

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.75  E-value=15  Score=45.79  Aligned_cols=160  Identities=16%  Similarity=0.205  Sum_probs=98.7

Q ss_pred             EEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEE--------eCCCCEEEEEeCCCcEEEEeCCCCc
Q 001352          849 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--------SDALNILVSSGGDAQIFVWDVDGWG  920 (1093)
Q Consensus       849 ~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~--------s~dg~~l~s~s~dg~i~iwd~~~~~  920 (1093)
                      .+-+-|.=++.-+  +.|+.+.+|+..++.....+.+-+..|..+..        -|.=++++..+.--.|.|+-+.-.+
T Consensus        83 ~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~  160 (1311)
T KOG1900|consen   83 DMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE  160 (1311)
T ss_pred             eeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence            3334442344443  35788999999998877888777777776654        2333555555555667777665433


Q ss_pred             eeeeeeeecCC-CcccCCCCceEEEEccCCCEEEEEeCCeEE--EEEcCCc---c-ee----------------eeeecC
Q 001352          921 IQTCRSLQTPD-GVMTLAPSETHIQFHKDQTRFLLVHETHLA--IYEAEEL---T-CL----------------KQWFPI  977 (1093)
Q Consensus       921 ~~~~~~~~~~~-~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~--vwd~~~~---~-~~----------------~~~~~~  977 (1093)
                      .......-... .....+..|.++....+|+.+.+|.||.|+  +|...+|   + |.                .++...
T Consensus       161 ~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~  240 (1311)
T KOG1900|consen  161 FTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGS  240 (1311)
T ss_pred             ccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCC
Confidence            22211100000 000111358889989999999999998443  2222222   1 10                111224


Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001352          978 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus       978 h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
                      +..+|..++....-..|.+-++.|+|++|++..
T Consensus       241 ~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  241 SKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            567999999988888899999999999999988

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.60  E-value=5.9  Score=49.11  Aligned_cols=172  Identities=13%  Similarity=0.185  Sum_probs=102.3

Q ss_pred             ccCCchHHHHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCC
Q 001352          319 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  398 (1093)
Q Consensus       319 ~~~~~p~~~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  398 (1093)
                      .+..+|...+..+. |...=..+-+-|.=.+  |--+.|+.+.+|+.+++.....                   +.+-+.
T Consensus        63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~-------------------~d~~sh  120 (1311)
T KOG1900|consen   63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAE-------------------YDGLSH  120 (1311)
T ss_pred             ccccCCHHHHHHhc-Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCcccc-------------------ccchhh
Confidence            44677888777776 4433444444454333  3335789999999999765543                   334444


Q ss_pred             CeEEEE--------ECCCCCEEEEEEcCCEEEEEEccCCCcccce------EEeccccccEEEEEeeCCCCcEEEEEEcC
Q 001352          399 SVNRVV--------WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGD  464 (1093)
Q Consensus       399 ~V~~v~--------~s~dg~~las~~~d~~i~iwd~~~~~~~~~~------~~~~~h~~~v~~~~~s~d~~~l~l~s~~~  464 (1093)
                      .|..|.        |-|.=++|.+...--.|.++-+.-.+.....      ..+.-..-.|+|+....+|+   ++-+|.
T Consensus       121 tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR---IF~~G~  197 (1311)
T KOG1900|consen  121 TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR---IFFAGR  197 (1311)
T ss_pred             hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc---EEEeec
Confidence            555554        3444456555555555777765433221111      12222355789999888888   444555


Q ss_pred             CCcEEEEEC----CCC----ce----------------eEEee-cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC
Q 001352          465 DKTIKVWDA----VTG----SR----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS  519 (1093)
Q Consensus       465 d~~i~vwd~----~~~----~~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  519 (1093)
                      ||  .+|.+    ..|    ++                +-.+. .+..+|..+.+..  ....+.+-+..|+|.+||+..
T Consensus       198 dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  198 DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence            66  44533    211    11                11223 4677898888843  446889999999999999876

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.51  E-value=35  Score=38.61  Aligned_cols=61  Identities=11%  Similarity=0.151  Sum_probs=38.8

Q ss_pred             CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCC
Q 001352          336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  409 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg  409 (1093)
                      +..+.++|.|||+ +|++--..|.|++++..++.......+            .........+....|+|+|+-
T Consensus        30 ~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        30 NKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence            4789999999997 566644369999998766543221111            000011136778899999884

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.43  E-value=55  Score=40.64  Aligned_cols=173  Identities=14%  Similarity=0.156  Sum_probs=101.2

Q ss_pred             CCCCeeEEEEc---c----CCCEEEEEeCCeEEEEEccCc---------------eeEEEECC---CCCCeEEEEEcCCC
Q 001352          802 SQEAVPCFALS---K----NDAYLFSASGGVISLYIVMTF---------------KTILTIMP---PSPTATSLAFNPHD  856 (1093)
Q Consensus       802 ~~~~v~~l~~s---~----dg~~la~~~dg~i~iwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~d  856 (1093)
                      ...+|..|+|+   .    ...+|++-....+.|+...-.               ..+..+..   ...+...++|+|.+
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence            46688888887   2    235788777777888773211               12222221   22355677888777


Q ss_pred             CCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccC
Q 001352          857 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  936 (1093)
Q Consensus       857 ~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  936 (1093)
                      .+.+|+....|...||++..+...     +.. .          +-+.....|.| +.|...              .   
T Consensus       158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~~-~----------~~~~~~~~gsi-~~d~~e--------------~---  203 (765)
T PF10214_consen  158 QRQFAIVDEKGNWSVWDIKGRPKR-----KSS-N----------LRLSRNISGSI-IFDPEE--------------L---  203 (765)
T ss_pred             cceEEEEeccCcEEEEEecccccc-----CCc-c----------eeeccCCCccc-cCCCcc--------------c---
Confidence            778888888888888887211110     000 1          11111122222 222211              0   


Q ss_pred             CCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceee-eeecCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCC
Q 001352          937 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCD--CRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus       937 ~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~-~~~~~h~~~v~~~~fs~d--g~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
                       ..-..+.|.++-..|++.....+.++|+.+..... .........|..+.-+++  +..++-.  ...|...++...
T Consensus       204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~  278 (765)
T PF10214_consen  204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS  278 (765)
T ss_pred             -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence             12457888899889999888899999998776533 222334668888888887  3333322  356777788773

These proteins are found in fungi.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.29  E-value=35  Score=38.17  Aligned_cols=149  Identities=8%  Similarity=0.033  Sum_probs=85.8

Q ss_pred             eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCccee--eecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee--
Q 001352          847 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--  922 (1093)
Q Consensus       847 i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~--~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~--  922 (1093)
                      ...+..++ ++.+++.+..-..++-||-  |+..  ..-......++++.|.+++.+++.+ .+|.+ +|..+.++.-  
T Consensus       241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~  315 (398)
T PLN00033        241 FSTVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED  315 (398)
T ss_pred             eeeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence            34456667 7777776654433333432  2221  1112234568999999998877654 56654 4444443211  


Q ss_pred             -eeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeee--cCCCCCEEEEEEccCCCEEEEEeC
Q 001352          923 -TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFV  999 (1093)
Q Consensus       923 -~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~--~~h~~~v~~~~fs~dg~~l~t~~~  999 (1093)
                       ....+......    ..+.++.|.+++..+++|..|.+.... ..|+.-....  ..-......+.|.++++.+++| .
T Consensus       316 ~~f~~~~~~~~~----~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~  389 (398)
T PLN00033        316 FDFEEADIKSRG----FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-N  389 (398)
T ss_pred             cceeecccCCCC----cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-C
Confidence             11111111111    248889999999999999888776654 4444433322  1224578899998888777755 6


Q ss_pred             CCcEEEE
Q 001352         1000 DGTLSIH 1006 (1093)
Q Consensus      1000 dg~v~vw 1006 (1093)
                      +|.|.-|
T Consensus       390 ~G~il~~  396 (398)
T PLN00033        390 DGVLLRY  396 (398)
T ss_pred             CcEEEEe
Confidence            7876554

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.98  E-value=1.3  Score=30.68  Aligned_cols=32  Identities=22%  Similarity=0.223  Sum_probs=26.8

Q ss_pred             CCeEEEEECCCC---CEEEEEEcCCEEEEEEccCC
Q 001352          398 VSVNRVVWSPDG---SLLGVAYSKHIVQLYAYHGG  429 (1093)
Q Consensus       398 ~~V~~v~~s~dg---~~las~~~d~~i~iwd~~~~  429 (1093)
                      +.|.++.|||+.   .+|+.+-..+.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999854   58998888899999999863

It contains a characteristic DLL sequence motif.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=89.75  E-value=22  Score=41.20  Aligned_cols=147  Identities=13%  Similarity=0.097  Sum_probs=73.4

Q ss_pred             CCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEE
Q 001352          865 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  944 (1093)
Q Consensus       865 ~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  944 (1093)
                      ..+...++|.. |..+..+.........+.+.++|.+++..+  ..+..+|+.+.. ...  .....+...   -=..+.
T Consensus       126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v-~~~--~~l~~~~~~---~HHD~~  196 (477)
T PF05935_consen  126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV-IWE--YDLPGGYYD---FHHDID  196 (477)
T ss_dssp             BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E-EEE--EE--TTEE----B-S-EE
T ss_pred             CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE-EEe--eecCCcccc---cccccE
Confidence            34456666644 555544432222111166778998887655  678888887532 221  222221100   012477


Q ss_pred             EccCCCEEEEEe--------------CCeEEEEEcCCcceeeeeecC-C-------------------------CCCEEE
Q 001352          945 FHKDQTRFLLVH--------------ETHLAIYEAEELTCLKQWFPI-S-------------------------SVPISQ  984 (1093)
Q Consensus       945 ~s~dg~~l~~~~--------------d~~i~vwd~~~~~~~~~~~~~-h-------------------------~~~v~~  984 (1093)
                      .-|+|++|+.+.              +..|..+| .+|+.+..|... |                         =..+.+
T Consensus       197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns  275 (477)
T PF05935_consen  197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS  275 (477)
T ss_dssp             E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred             ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence            889999988754              23466666 677766554211 1                         135788


Q ss_pred             EEEcc-CCCEEEEEeCCCcEEEEEcCCCceEEEecccc
Q 001352          985 ATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1021 (1093)
Q Consensus       985 ~~fs~-dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~ 1021 (1093)
                      +.+.+ |+.+|+++=.-..|...|..++++...+....
T Consensus       276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~  313 (477)
T PF05935_consen  276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG  313 (477)
T ss_dssp             EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred             cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence            99988 55555555444578888988999988877544

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=89.71  E-value=33  Score=38.38  Aligned_cols=39  Identities=10%  Similarity=0.044  Sum_probs=19.4

Q ss_pred             EEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC
Q 001352          603 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  643 (1093)
Q Consensus       603 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  643 (1093)
                      +.+||..+.+....-.....  .....+..-+++++++|+.
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~  352 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGE  352 (376)
T ss_pred             hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCC
Confidence            45788887665432222211  1122334445667777765

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.68  E-value=39  Score=37.79  Aligned_cols=199  Identities=16%  Similarity=0.116  Sum_probs=105.0

Q ss_pred             EEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC-CeE
Q 001352          412 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-PVY  490 (1093)
Q Consensus       412 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~-~v~  490 (1093)
                      +.++..+|.|.-.|.+++..+-..... +....+..-.+..+|+   ++.++.++.+...|..+|+.+........ .+.
T Consensus        71 v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~  146 (370)
T COG1520          71 VYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA  146 (370)
T ss_pred             EEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence            333466777777777777533211111 1112223333333776   77788899999999889999887765551 111


Q ss_pred             EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC---ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352          491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  567 (1093)
Q Consensus       491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~  567 (1093)
                      .-.+  ..+ ..+..++.+|.+...+..++...........   .+..-....++... .+..+ - ++.+.-.|..+|.
T Consensus       147 ~~~v--~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy-~~~~~-~-~~~~~a~~~~~G~  220 (370)
T COG1520         147 SPPV--VGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVY-VGSDG-Y-DGILYALNAEDGT  220 (370)
T ss_pred             cCcE--EcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEE-EecCC-C-cceEEEEEccCCc
Confidence            1111  112 2444455778888888887777666444321   11111112233333 32221 1 3357777877777


Q ss_pred             eeeeeecccccC-CCeEEE-EEcC----CCCEEEEEeCCCcEEEEECCCCceEEEEecC
Q 001352          568 IKRTYQGLQLQH-NSVSVV-HFDT----AKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  620 (1093)
Q Consensus       568 ~~~~~~~~~~~~-~~v~~v-~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  620 (1093)
                      ..-......... ..+... .+..    .+..++.++.++.+...|..+++.+..++..
T Consensus       221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            665533221000 001000 1100    1223466777888999999999999888754

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.31  E-value=6.6  Score=43.37  Aligned_cols=95  Identities=17%  Similarity=0.132  Sum_probs=62.8

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEEc----------CCCc--eEEEeccccccCCCCCCCccceeEEEeCCCC--C
Q 001352          979 SVPISQATFSCDCRMVFTSFVDGTLSIHEA----------SNLE--VQCRILSTAYLRPTTSCLHVYPHAIAAHPLK--P 1044 (1093)
Q Consensus       979 ~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~----------~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d--~ 1044 (1093)
                      .-.|..+..|+.|..++-+|.+|.+.+ .+          ..|+  ..|+..+.... --....++.-..++|||+.  .
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vM-eLp~rwG~~s~~eDgk~~v~CRt~~i~~~-~ftss~~ltl~Qa~WHP~S~~D  180 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVM-ELPKRWGKNSEFEDGKSTVNCRTTPVAER-FFTSSTSLTLKQAAWHPSSILD  180 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEE-EchhhcCccceecCCCceEEEEeecccce-eeccCCceeeeeccccCCccCC
Confidence            446778888999999999999985443 33          2232  23333211100 0012344556678899953  3


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCcccCCCcc
Q 001352         1045 TQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1075 (1093)
Q Consensus      1045 ~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~ 1075 (1093)
                      ..|..-..|..+++|+.++...-|..++|--
T Consensus       181 ~hL~iL~sdnviRiy~lS~~telylqpgepg  211 (741)
T KOG4460|consen  181 PHLVLLTSDNVIRIYSLSEPTELYLQPGEPG  211 (741)
T ss_pred             ceEEEEecCcEEEEEecCCcchhhccCCCcC
Confidence            6788999999999999998887787775544

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=89.31  E-value=51  Score=38.68  Aligned_cols=80  Identities=9%  Similarity=0.135  Sum_probs=48.4

Q ss_pred             CCEEEEEeCCeEEEEEccCceeEEEECC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecc-----cccC
Q 001352          815 DAYLFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSK  888 (1093)
Q Consensus       815 g~~la~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~-----~h~~  888 (1093)
                      +..++-.....|++.+...++....... ....|.+.+..   +.+++.+..++.+..+.+..........     ....
T Consensus       418 ~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~---~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (504)
T PF10433_consen  418 DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIN---DPQVLVALSGGELVYFELDDNKISVSDNDETILELDN  494 (504)
T ss_dssp             TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEES---SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS
T ss_pred             CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEEC---CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC
Confidence            5666666677799999888877776543 34456666664   3467777778999999988765532222     1467


Q ss_pred             CeEEEEEeC
Q 001352          889 RVTGLVFSD  897 (1093)
Q Consensus       889 ~V~~l~~s~  897 (1093)
                      .|.|+..+|
T Consensus       495 eis~l~i~p  503 (504)
T PF10433_consen  495 EISCLSIEP  503 (504)
T ss_dssp             -EEEEE---
T ss_pred             ceEEEEeCC
Confidence            788887765

...

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.16  E-value=0.087  Score=56.78  Aligned_cols=243  Identities=16%  Similarity=0.114  Sum_probs=136.9

Q ss_pred             EEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEE
Q 001352          740 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF  819 (1093)
Q Consensus       740 ~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la  819 (1093)
                      ...+.+.+..++.++.+..+..||-...                       .....     ........+++..++..++
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~agq-----------------------~~le~-----n~tg~aldm~wDkegdvla   90 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAGQ-----------------------VILEL-----NPTGKALDMAWDKEGDVLA   90 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhcc-----------------------eeccc-----CCchhHhhhhhccccchhh
Confidence            3456666666888887777776652221                       11111     1334455677888887776


Q ss_pred             EEe--CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeC
Q 001352          820 SAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD  897 (1093)
Q Consensus       820 ~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~  897 (1093)
                      +..  .+.+.+||+.+....+--.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|..+++++++.+
T Consensus        91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen   91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL  169 (615)
T ss_pred             hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence            664  58899999975432211111111122278999 899999999999999999988777666555999999999998


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCC--CCceEEEEccCCCEEEEEeCCeEEEE----EcCCccee
Q 001352          898 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA--PSETHIQFHKDQTRFLLVHETHLAIY----EAEELTCL  971 (1093)
Q Consensus       898 dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~dg~~l~~~~d~~i~vw----d~~~~~~~  971 (1093)
                      .+ +.+.++.|..+.+-...+....   ..+. .+.+...  .....=.|..-|..+...-.+.+.+.    +-.++ ..
T Consensus       170 Ed-~vil~dcd~~L~v~~qegeta~---ltev-ggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~-pv  243 (615)
T KOG2247|consen  170 ED-YVILCDCDNTLSVTTQEGETAS---LTEV-GGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDE-PV  243 (615)
T ss_pred             cc-eeeecCcHHHHHHhhhccceee---eeec-cCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCC-cc
Confidence            75 5666677766554433331111   1111 1111000  00111123334444444322222211    11111 11


Q ss_pred             eeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352          972 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       972 ~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                      ...+....+.+.++.|--||..+. +..-|.|..-...++++...|.
T Consensus       244 al~fq~~~gni~cyrwylDg~i~i-gf~ag~iV~iS~h~aeLgaeff  289 (615)
T KOG2247|consen  244 ALQFQEKYGNIHCYRWYLDGYILI-GFDAGYIVSISAHNAELGAEFF  289 (615)
T ss_pred             ceEeeecCCceeEEEEeccccccc-cccceeEEEEeccchHHHHHHH
Confidence            112222356788888888885444 6666777777788877765543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.95  E-value=40  Score=36.99  Aligned_cols=188  Identities=14%  Similarity=0.163  Sum_probs=101.2

Q ss_pred             EEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecc--cCCccE--EEEEec-C---CeEEEEEcCCCCceE-EecC
Q 001352          458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA--KENIHF--IFSISV-D---GKIKAWLYDSLGARV-DYDA  528 (1093)
Q Consensus       458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~--l~s~~~-d---g~i~vwd~~~~~~~~-~~~~  528 (1093)
                      +++....++-+.+||+ .|+.++.+.  .+.++.+.+..  .-+++.  |+.++. +   .+|++|.++...... .+..
T Consensus        70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~  146 (381)
T PF02333_consen   70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD  146 (381)
T ss_dssp             EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred             eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence            6777777888999995 566666664  23444443211  112222  444443 2   469999887533322 2221


Q ss_pred             C-------CCceEEEEE--cc-CCCEEEEEecCCCCceeEEEEeC---CCC----eeeeeeecccccCCCeEEEEEcCCC
Q 001352          529 P-------GLGCTRMAY--SA-NGRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK  591 (1093)
Q Consensus       529 ~-------~~~v~~~~~--s~-d~~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~v~~~~~~  591 (1093)
                      .       ...+..+|+  ++ +|.+.+.... +  ++.+..|.+   ..+    +.++.|...    ..+..|......
T Consensus       147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k--~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDDe~  219 (381)
T PF02333_consen  147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-K--DGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDDET  219 (381)
T ss_dssp             TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-T--TSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEETTT
T ss_pred             CCcccccccccceeeEEeecCCCCcEEEEEec-C--CceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEeccc
Confidence            1       123566765  33 4555444432 1  334555544   333    456777653    368888999888


Q ss_pred             CEEEEEeCCCcEEEEECCCC-----ceEEEEecCCCCCCCceEEEe--cCCC-EEEE-EECCCeEEEEEcCCC
Q 001352          592 DQILAAGDDHVIKIWDMNKV-----QLLTTIDAGGGLPENPRICFN--KNGT-LLAV-IANENRIKILETPES  655 (1093)
Q Consensus       592 ~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~v~~s--~~~~-~l~~-~~~dg~i~iw~~~~~  655 (1093)
                      .+|+.+-++.-|.-|+.+..     +.+.......-...+-.+++-  +++. +|++ .-.+++..+|+....
T Consensus       220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            99999999998888887632     222222222223446666664  3432 4444 444788999998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.93  E-value=7.5  Score=47.29  Aligned_cols=99  Identities=15%  Similarity=0.156  Sum_probs=65.9

Q ss_pred             CeeEEEEccCC--CEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeee
Q 001352          805 AVPCFALSKND--AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK  882 (1093)
Q Consensus       805 ~v~~l~~s~dg--~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~  882 (1093)
                      ...++.|.|.-  ..++.-.|+.|++..+.-......--......++++|+| .|+.+++|...|++.-|... ++....
T Consensus       157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~  234 (1405)
T KOG3630|consen  157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSE  234 (1405)
T ss_pred             ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeec
Confidence            34556666643  223333477787777653333222223456789999999 99999999999999998755 444444


Q ss_pred             ccc----ccCCeEEEEEeCCCCEEEEE
Q 001352          883 LEG----HSKRVTGLVFSDALNILVSS  905 (1093)
Q Consensus       883 l~~----h~~~V~~l~~s~dg~~l~s~  905 (1093)
                      +.+    ....|.+|.|-....++++-
T Consensus       235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  235 IPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             ccCCCcCCCcceeEEEEecceeEEEEe
Confidence            332    24679999999877777754

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.37  E-value=34  Score=37.32  Aligned_cols=151  Identities=11%  Similarity=0.110  Sum_probs=86.0

Q ss_pred             CCCCeeEEEEcc-CCCEEEEEeCCe------EEEEEccC--c--eeE-----EEECCCCC--------CeEEEEEcCCCC
Q 001352          802 SQEAVPCFALSK-NDAYLFSASGGV------ISLYIVMT--F--KTI-----LTIMPPSP--------TATSLAFNPHDN  857 (1093)
Q Consensus       802 ~~~~v~~l~~s~-dg~~la~~~dg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~i~~l~~s~~d~  857 (1093)
                      .-+....+.+.+ ++.+++...+|.      +..+++..  +  ..+     ..+....+        ..-++++.+ ++
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g   96 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG   96 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence            345678889984 556666655565      55444433  1  111     11222221        344788866 88


Q ss_pred             CEEEEEeCC------CeEEEEEcCCcceeeecc---------------cccCCeEEEEEeCCCCEEEEEeC-----CC--
Q 001352          858 NVIAIGMDD------STILIYNARSSEVISKLE---------------GHSKRVTGLVFSDALNILVSSGG-----DA--  909 (1093)
Q Consensus       858 ~~lasg~~d------g~i~iwd~~~~~~~~~l~---------------~h~~~V~~l~~s~dg~~l~s~s~-----dg--  909 (1093)
                      .++++.-.+      ..|+.++.. |+....+.               ..+...-+|+++|||+.|.++.+     |+  
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~  175 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR  175 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence            888876667      788888876 65544331               13456889999999997666533     22  


Q ss_pred             -------cEEEEeCCCCc---eeeeeeeecCC-CcccCCCCceEEEEccCCCEEEE
Q 001352          910 -------QIFVWDVDGWG---IQTCRSLQTPD-GVMTLAPSETHIQFHKDQTRFLL  954 (1093)
Q Consensus       910 -------~i~iwd~~~~~---~~~~~~~~~~~-~~~~~~~~v~~~~~s~dg~~l~~  954 (1093)
                             .++|+.++...   ........... ........++.+.+-+++++|+.
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                   15565554321   12222222221 00001236899999999998887

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=88.12  E-value=67  Score=41.71  Aligned_cols=150  Identities=15%  Similarity=0.196  Sum_probs=87.9

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  412 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l  412 (1093)
                      .|-..++.|.-+|+|.++ =.  .|+.++.||..+++         |.+-          -.....+++.++-.-||+..
T Consensus       360 aH~A~LTgv~~~~~ge~l-Rl--Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lY  417 (1774)
T PF11725_consen  360 AHIAHLTGVHTDPDGEQL-RL--HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLY  417 (1774)
T ss_pred             HHHHHhhccccCCCCCeE-Ee--ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceE
Confidence            355677778888898853 32  67889999987653         3210          01123455566666677766


Q ss_pred             EEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC------ce--eEEeec
Q 001352          413 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------SR--TYSFEG  484 (1093)
Q Consensus       413 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~------~~--~~~~~~  484 (1093)
                      | =+.+   .+-|+..+..-.      ..-..+.+...+++|.- .+.++-....+.+|++...      ++  ...+.+
T Consensus       418 A-k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d  486 (1774)
T PF11725_consen  418 A-KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD  486 (1774)
T ss_pred             e-cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccC
Confidence            6 2222   233555443111      12235777888999983 3666666667799998654      11  122333


Q ss_pred             CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC
Q 001352          485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS  519 (1093)
Q Consensus       485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~  519 (1093)
                      -.....++.++  ++  .|+++..+|.++.=++..
T Consensus       487 G~a~A~~VgLs--~d--rLFvADseGkLYsa~l~~  517 (1774)
T PF11725_consen  487 GKAQAQSVGLS--ND--RLFVADSEGKLYSADLPA  517 (1774)
T ss_pred             Cchhhhheeec--CC--eEEEEeCCCCEEeccccc
Confidence            33345556553  33  688888899888776654

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=88.06  E-value=21  Score=39.52  Aligned_cols=149  Identities=9%  Similarity=0.099  Sum_probs=89.7

Q ss_pred             EEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccC------CccEEEEEecCCeEEEEEcCCCC
Q 001352          448 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYDSLG  521 (1093)
Q Consensus       448 ~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~~~dg~i~vwd~~~~~  521 (1093)
                      +-...+...+++..|+....++--|++.|+.+-.+..|...|  +.+.|..      +.+.|+..| +..|.-.|.+...
T Consensus       472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~g  548 (776)
T COG5167         472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARG  548 (776)
T ss_pred             ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeec-ccceEEecccccC
Confidence            333334444466777778888889999999999998887664  3333321      223454444 4444445555444


Q ss_pred             ceEEecCCCC-----ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE
Q 001352          522 ARVDYDAPGL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA  596 (1093)
Q Consensus       522 ~~~~~~~~~~-----~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~  596 (1093)
                      ..........     ...+..- ...-++++++..++    |++||--.-+....+.+..   ..|..+..+.+|.++++
T Consensus       549 NKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGD----irLyDRig~rAKtalP~lG---~aIk~idvta~Gk~ila  620 (776)
T COG5167         549 NKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGD----IRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKHILA  620 (776)
T ss_pred             Cceeeeeehhcccccccccccc-ccCceEEEecCCCc----eeeehhhcchhhhcCcccc---cceeeeEeecCCcEEEE
Confidence            2222211111     1222222 23457888876443    9999965555555555555   78999999999999998


Q ss_pred             EeCCCcEEEEEC
Q 001352          597 AGDDHVIKIWDM  608 (1093)
Q Consensus       597 ~~~dg~i~iwd~  608 (1093)
                      .+.. .+.+-|+
T Consensus       621 TCk~-yllL~d~  631 (776)
T COG5167         621 TCKN-YLLLTDV  631 (776)
T ss_pred             eecc-eEEEEec
Confidence            7753 4555554

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=87.56  E-value=47  Score=36.20  Aligned_cols=108  Identities=9%  Similarity=-0.038  Sum_probs=50.6

Q ss_pred             EEEEEcCC-----CcEEEEECCCCcee---EEeecCCCCe--EEeeecccCCccEEEEEec-----CCeEEEEEcCCCCc
Q 001352          458 SVITCGDD-----KTIKVWDAVTGSRT---YSFEGHGAPV--YSLCPHAKENIHFIFSISV-----DGKIKAWLYDSLGA  522 (1093)
Q Consensus       458 ~l~s~~~d-----~~i~vwd~~~~~~~---~~~~~h~~~v--~~~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~  522 (1093)
                      +++.|+.+     ..+..+|+.+.+..   ..+..-..+.  .+++.  . ++.+.+.|+.     ...+..||+.+.+=
T Consensus        75 lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~W  151 (323)
T TIGR03548        75 IYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--K-DGTLYVGGGNRNGKPSNKSYLFNLETQEW  151 (323)
T ss_pred             EEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--E-CCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence            55666654     25667777766531   2221111111  11121  1 3455566654     23577777765432


Q ss_pred             eEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001352          523 RVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  568 (1093)
Q Consensus       523 ~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~  568 (1093)
                      ...-..+. ......+...+++..+.++.++.....+..||+.+.+-
T Consensus       152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            21111111 12223333456677777665332223367889887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=87.43  E-value=2.5  Score=29.32  Aligned_cols=32  Identities=13%  Similarity=0.093  Sum_probs=26.3

Q ss_pred             CCEEEEEEccCCC---EEEEEeCCCcEEEEEcCCC
Q 001352          980 VPISQATFSCDCR---MVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus       980 ~~v~~~~fs~dg~---~l~t~~~dg~v~vwd~~~~ 1011 (1093)
                      +.|.++.|||+..   +|+.+-.-|.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4688999998554   8888877899999999963

It contains a characteristic DLL sequence motif.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=87.36  E-value=38  Score=34.93  Aligned_cols=276  Identities=10%  Similarity=0.058  Sum_probs=128.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceee
Q 001352          580 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD  659 (1093)
Q Consensus       580 ~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  659 (1093)
                      +-+..+.++  +++.+.+..+.-++|.|+.+...-..+..-....  ..-.+.-.|++..++..+.-+.+.|+.+.....
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g--yaygv~vsGn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG--YAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCc--eEEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence            345566665  4678888888889999998765433332111101  223334458888888867777788887653322


Q ss_pred             e---cccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCcccccc
Q 001352          660 A---AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN  736 (1093)
Q Consensus       660 ~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  736 (1093)
                      .   ..........++++                        |++-..+..|+-+.+-|+.........    .......
T Consensus       163 lagrya~~~~d~~~v~IS------------------------Gn~AYvA~~d~GL~ivDVSnp~sPvli----~~~n~g~  214 (370)
T COG5276         163 LAGRYALPGGDTHDVAIS------------------------GNYAYVAWRDGGLTIVDVSNPHSPVLI----GSYNTGP  214 (370)
T ss_pred             eeeeeccCCCCceeEEEe------------------------cCeEEEEEeCCCeEEEEccCCCCCeEE----EEEecCC
Confidence            1   11111111222222                        555556667777777776533221111    0011222


Q ss_pred             ceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCC
Q 001352          737 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  816 (1093)
Q Consensus       737 ~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  816 (1093)
                      .+.++..+++..+++.. ..| +.+-+....+           .+.++....-           .....++.+..+  ++
T Consensus       215 g~~sv~vsdnr~y~vvy-~eg-vlivd~s~~s-----------sp~~~gsyet-----------~~p~~~s~v~Vs--~~  268 (370)
T COG5276         215 GTYSVSVSDNRAYLVVY-DEG-VLIVDVSGPS-----------SPTVFGSYET-----------SNPVSISTVPVS--GE  268 (370)
T ss_pred             ceEEEEecCCeeEEEEc-ccc-eEEEecCCCC-----------CceEeecccc-----------CCcccccceecc--cc
Confidence            56666666665543333 222 2222222111           1111111100           122222333443  33


Q ss_pred             EEEEEe-CCeEEEEEccCcee---EEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEE
Q 001352          817 YLFSAS-GGVISLYIVMTFKT---ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG  892 (1093)
Q Consensus       817 ~la~~~-dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~  892 (1093)
                      +...+. +..+.+-|+.....   ...+.........+..+   +.++..+..+ +..+-+....+......+-...+.+
T Consensus       269 ~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay---~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s  344 (370)
T COG5276         269 YAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY---GNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQS  344 (370)
T ss_pred             eeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe---cCeeEeccCC-ceEEEeCCChhhcccccCcceEeee
Confidence            333333 33344445443211   11111111123333332   2244434333 3444455444433333333344555


Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEeCC
Q 001352          893 LVFSDALNILVSSGGDAQIFVWDVD  917 (1093)
Q Consensus       893 l~~s~dg~~l~s~s~dg~i~iwd~~  917 (1093)
                      .+.+-+.+.+-+...++.+.||+..
T Consensus       345 ~~v~~~~q~~y~~d~~~gl~i~~~~  369 (370)
T COG5276         345 CDVSVDTQIIYSTDYNGGLSIIEYL  369 (370)
T ss_pred             cceEEEeeEEEEeecCCCEEEEEec
Confidence            5555567788888889999999863

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.28  E-value=1.1  Score=30.67  Aligned_cols=30  Identities=10%  Similarity=0.207  Sum_probs=22.4

Q ss_pred             CCCCceeeeecCCCceEEEEEccC--CcEEEE
Q 001352          334 GSSSPMSMDFHPVQHTLLLVGTNV--GDTGLW  363 (1093)
Q Consensus       334 h~~~V~~~~~spdg~~llasg~~d--g~i~iw  363 (1093)
                      ....-.+.+|||||++|+.++..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            444678899999999988887777  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PRK13684 Ycf48-like protein; Provisional

Probab=87.04  E-value=51  Score=36.06  Aligned_cols=154  Identities=19%  Similarity=0.159  Sum_probs=92.1

Q ss_pred             CCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEE-ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceee
Q 001352          803 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  881 (1093)
Q Consensus       803 ~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~  881 (1093)
                      ...+.++.+.|++.+++++..|.+..-.-..++.-.. .......++++++.+ +++.+++| ..|.+++=..+.|..-.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESWS  249 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCccc
Confidence            4567889999999999888888655321112221111 223446789999999 78777665 46766532344443222


Q ss_pred             eccc----ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeC
Q 001352          882 KLEG----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE  957 (1093)
Q Consensus       882 ~l~~----h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d  957 (1093)
                      ....    -...+.++.+.+++..++ ++.+|.|. ...+.++  .........+..   .....+.|..+++.++++..
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~--tW~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~~  322 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGK--TWEKDPVGEEVP---SNFYKIVFLDPEKGFVLGQR  322 (334)
T ss_pred             cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCC--CCeECCcCCCCC---cceEEEEEeCCCceEEECCC
Confidence            1111    123578899999877555 55677544 4555433  111111111111   24778888888999999999


Q ss_pred             CeEEEEEc
Q 001352          958 THLAIYEA  965 (1093)
Q Consensus       958 ~~i~vwd~  965 (1093)
                      |.|.-|+-
T Consensus       323 G~il~~~~  330 (334)
T PRK13684        323 GVLLRYVG  330 (334)
T ss_pred             ceEEEecC
Confidence            98877763

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.02  E-value=11  Score=47.54  Aligned_cols=69  Identities=10%  Similarity=0.148  Sum_probs=46.9

Q ss_pred             CceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 001352          939 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1013 (1093)
Q Consensus       939 ~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~ 1013 (1093)
                      .+.+..+...+..+.....+.+-+|+.........+...+..      .+.++..++++..||.+..||...+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQL------ESRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ccceeeeecCCCcceeeeeeeeeehhcccccchhhccccccc------CccCCceEEEEEecCCEEeeecCCCce
Confidence            345555555566666666667777776555444443322211      189999999999999999999999855

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=86.99  E-value=15  Score=40.63  Aligned_cols=143  Identities=15%  Similarity=0.225  Sum_probs=88.5

Q ss_pred             ccCCCEEEEEe--CCeEEEEEccCceeEEEECCCCCCeEEEEEcCC-------CCCEEEEEeCCCeEEEEEcCC-cceee
Q 001352          812 SKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH-------DNNVIAIGMDDSTILIYNARS-SEVIS  881 (1093)
Q Consensus       812 s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-------d~~~lasg~~dg~i~iwd~~~-~~~~~  881 (1093)
                      ..|..++...+  ...+.-.|++.|+.+.....|...  -+.|.|.       +.+.|+ |-.+..|.-.|.+- |..+.
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCcee
Confidence            34455555444  256778899999999998877665  4666662       223444 55566665556543 32222


Q ss_pred             ecccccCCeEEEEEeC----CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeC
Q 001352          882 KLEGHSKRVTGLVFSD----ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE  957 (1093)
Q Consensus       882 ~l~~h~~~V~~l~~s~----dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d  957 (1093)
                      ..+ ...-++.-.||.    ...++|.+|.-|-|++||--+....+  .   +++   .+..|..+..+.+|+++++...
T Consensus       553 v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt--a---lP~---lG~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         553 VVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT--A---LPG---LGDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             eee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhh--c---Ccc---cccceeeeEeecCCcEEEEeec
Confidence            111 111222223332    34689999999999999976633222  1   111   2236889999999999999888


Q ss_pred             CeEEEEEcC
Q 001352          958 THLAIYEAE  966 (1093)
Q Consensus       958 ~~i~vwd~~  966 (1093)
                      ..+.+-|+.
T Consensus       624 ~yllL~d~~  632 (776)
T COG5167         624 NYLLLTDVP  632 (776)
T ss_pred             ceEEEEecc
Confidence            888888874

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=86.84  E-value=58  Score=42.24  Aligned_cols=133  Identities=13%  Similarity=0.069  Sum_probs=79.0

Q ss_pred             EeCCCeEEEEEcCCcc-------eeeecc---------cccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeee
Q 001352          863 GMDDSTILIYNARSSE-------VISKLE---------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS  926 (1093)
Q Consensus       863 g~~dg~i~iwd~~~~~-------~~~~l~---------~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~  926 (1093)
                      |-.||.|.-||-.+..       -+..|+         -..+.|..+.+++...-++-+. +..+-+=-. ..+......
T Consensus       619 ~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~~-r~~~e~G~~  696 (1774)
T PF11725_consen  619 GLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQR-RNKVELGDA  696 (1774)
T ss_pred             eeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-Ccccccccc-cCCCCCCcc
Confidence            5568999999976421       111111         1345677777777655554432 221111000 111111223


Q ss_pred             eecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 001352          927 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 1004 (1093)
Q Consensus       927 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~ 1004 (1093)
                      +..++.     ..|+++++-.+.++++....|.+.... ..+..+..-..+-.+.|..++......+.+ -..+|.++
T Consensus       697 l~Gl~~-----~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf  767 (1774)
T PF11725_consen  697 LEGLED-----RVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYA-LTSTGELF  767 (1774)
T ss_pred             ccCCCc-----CcceeEEEEcCCceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeE-ecCCCcee
Confidence            333331     368999999999999999999999888 666655444445578999999988765555 45677544

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=86.67  E-value=75  Score=37.56  Aligned_cols=242  Identities=13%  Similarity=0.194  Sum_probs=126.3

Q ss_pred             EEccCCCEEEEEe-CCeEEEEEcc-CceeEEEECC-CCCCeEEEEEcCCC--CCEEEEEeCCC-eEEEEEcCCc------
Q 001352          810 ALSKNDAYLFSAS-GGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHD--NNVIAIGMDDS-TILIYNARSS------  877 (1093)
Q Consensus       810 ~~s~dg~~la~~~-dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~s~~d--~~~lasg~~dg-~i~iwd~~~~------  877 (1093)
                      .++|+...+-.|- ...|.-|-+. |.+.+..+.- ...-|.|+..-..+  .++.++|-.++ .-++-.+..+      
T Consensus        34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~  113 (670)
T PF10395_consen   34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTED  113 (670)
T ss_pred             ccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccc
Confidence            5677777776664 3445555443 4556665543 34567777664311  34555564444 3344333322      


Q ss_pred             -----ce--eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCc-ccCCCCceEEEEccCC
Q 001352          878 -----EV--ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV-MTLAPSETHIQFHKDQ  949 (1093)
Q Consensus       878 -----~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~dg  949 (1093)
                           +.  ...++ -.+.|..+.|.++++.+++.-.+|.|.+||.+.+.......+...... .....-|.....-...
T Consensus       114 ~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~  192 (670)
T PF10395_consen  114 GTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGK  192 (670)
T ss_pred             cccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCC
Confidence                 11  11122 356799999999999999999999999999944332221111111110 0000011111111223


Q ss_pred             CEEEE-Ee-CC---eEEEEEc--CCcceeeeee--cCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001352          950 TRFLL-VH-ET---HLAIYEA--EELTCLKQWF--PISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1019 (1093)
Q Consensus       950 ~~l~~-~~-d~---~i~vwd~--~~~~~~~~~~--~~h~~~v~~~~fs~-dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 1019 (1093)
                      .++++ +. ++   ..+++.+  .+... ..+.  ..+........|+. +|.+..-  .++.|.+|++...+....+..
T Consensus       193 ~~ll~v~~~~~~k~~ykL~~l~~~~~~~-~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l  269 (670)
T PF10395_consen  193 DLLLTVSQLSNSKLSYKLISLSNESSSI-FELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISL  269 (670)
T ss_pred             ceEEEEEEcCCCcEEEEEEEeccCCcce-EEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEe
Confidence            44444 33 22   4778887  22222 2211  11222333344444 5544333  678999999999999888885


Q ss_pred             ccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352         1020 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus      1020 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
                      ...+....  ..+.++ .+.+|  .+.|+  +.++.|++.|+.
T Consensus       270 ~~ii~~~~--~~~vSl-~~~s~--nRvLL--s~~nkIyLld~~  305 (670)
T PF10395_consen  270 PSIIDKES--DDLVSL-KPPSP--NRVLL--SVNNKIYLLDLK  305 (670)
T ss_pred             chhhcccc--ccceEe-ecCCC--CeEEE--EcCCEEEEEeeh
Confidence            54444431  223322 22333  24444  457899999974

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=86.62  E-value=2.3  Score=45.67  Aligned_cols=158  Identities=9%  Similarity=0.096  Sum_probs=98.2

Q ss_pred             CCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEE-EEC-CCCC----CeE-EEEEcCCCCCEEEEEeCCCeEEEE-E
Q 001352          802 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL-TIM-PPSP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N  873 (1093)
Q Consensus       802 ~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~-~~~-~~~~----~i~-~l~~s~~d~~~lasg~~dg~i~iw-d  873 (1093)
                      ....+..+-..|||+.+.+-+..++.++++.+..... .+. ...+    .|+ ++..-. ++.-|.+++.||-|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence            4567778899999999999888899999887543321 111 1111    222 222233 67778889999988877 4


Q ss_pred             cCCc-c----eeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccC
Q 001352          874 ARSS-E----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  948 (1093)
Q Consensus       874 ~~~~-~----~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d  948 (1093)
                      ...+ .    .++.++-...++..+.--.+.+-+++-+..|++.++.-...+..   ..+..-      ..+..+++||.
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l---L~~~~~------~~~~~~~~Sp~  368 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL---LFERAY------QAPQLVAMSPN  368 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce---ehhhhh------cCcceeeeCcc
Confidence            4322 2    12222222234444443334566788888888887765442211   111111      13667999999


Q ss_pred             CCEEEEEeCCeEEEEEcCCcc
Q 001352          949 QTRFLLVHETHLAIYEAEELT  969 (1093)
Q Consensus       949 g~~l~~~~d~~i~vwd~~~~~  969 (1093)
                      +.+|++-..|.++++.+++..
T Consensus       369 ~~~Ll~e~~gki~~~~l~Nr~  389 (733)
T COG4590         369 QAYLLSEDQGKIRLAQLENRN  389 (733)
T ss_pred             cchheeecCCceEEEEecCCC
Confidence            999999888999999887543

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=86.55  E-value=16  Score=37.36  Aligned_cols=148  Identities=11%  Similarity=0.043  Sum_probs=82.5

Q ss_pred             EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC---CeeeeeeecccccCCCeEEEEEcC
Q 001352          513 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDT  589 (1093)
Q Consensus       513 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~v~~~~  589 (1093)
                      .+||+.+.+...........+.+-++-+||+++.+++. .++...+++++..+   ..........-.....-.++..-|
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            45888776554433333334555668899999998875 34667788888755   111111111011112334455678


Q ss_pred             CCCEEEEEeCCC-cEEEEECCC-CceEEEE---ec---CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeec
Q 001352          590 AKDQILAAGDDH-VIKIWDMNK-VQLLTTI---DA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA  661 (1093)
Q Consensus       590 ~~~~l~~~~~dg-~i~iwd~~~-~~~~~~~---~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  661 (1093)
                      ||+.++.|+... +..+|.... ......+   ..   ......-..+...|+|++++.+..+  -.|||..+.+.+..+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence            999999987664 345555422 1111111   10   0111122357778999999888764  456688877665555


Q ss_pred             cc
Q 001352          662 GV  663 (1093)
Q Consensus       662 ~~  663 (1093)
                      ..
T Consensus       206 P~  207 (243)
T PF07250_consen  206 PD  207 (243)
T ss_pred             CC
Confidence            54

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=86.16  E-value=21  Score=38.77  Aligned_cols=163  Identities=13%  Similarity=0.124  Sum_probs=89.6

Q ss_pred             cccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCee-EEEEc
Q 001352          734 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP-CFALS  812 (1093)
Q Consensus       734 ~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~s  812 (1093)
                      ....+..+-..|||+.+...+. ..+.++++........ +        +-+-..|.           ....|+ .+..-
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-k--------l~~dspg~-----------~~~~Vte~l~lL  277 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-K--------LVDDSPGD-----------SRHQVTEQLYLL  277 (733)
T ss_pred             CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-h--------hhhcCCCc-----------hHHHHHHHHHHH
Confidence            4456778889999998887776 6788888776543211 0        01111110           001111 11112


Q ss_pred             cCCCEEEEE-eCCeEEEE-EccCce-----eEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeeccc
Q 001352          813 KNDAYLFSA-SGGVISLY-IVMTFK-----TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG  885 (1093)
Q Consensus       813 ~dg~~la~~-~dg~i~iw-d~~~~~-----~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~  885 (1093)
                      ..|.-+.++ .||.|.-| |...+.     .++.++-...++..+.--. +.+-+++-+..|++.++.....+.+-.-. 
T Consensus       278 ~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~-  355 (733)
T COG4590         278 SGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER-  355 (733)
T ss_pred             hCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh-
Confidence            233334444 36666655 443221     2222332333444444333 55667777888988888765544332222 


Q ss_pred             ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001352          886 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  920 (1093)
Q Consensus       886 h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~  920 (1093)
                      --..+.-+++||.+.+|++-. .|.++++.+++..
T Consensus       356 ~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~  389 (733)
T COG4590         356 AYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRN  389 (733)
T ss_pred             hhcCcceeeeCcccchheeec-CCceEEEEecCCC
Confidence            223566789999999998754 4569999888743

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.01  E-value=25  Score=34.27  Aligned_cols=150  Identities=11%  Similarity=0.070  Sum_probs=77.7

Q ss_pred             CccEEEEEecCC--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc
Q 001352          499 NIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  576 (1093)
Q Consensus       499 ~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  576 (1093)
                      ++.++.+.+.-|  .|++||+.+++...........+..=-...-|.++..-..   .++.-..+|..+-+.+..+.-..
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G  131 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG  131 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence            446677766544  5999999988877655443222211111112233332222   15556778888877766654322


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCC---CCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352          577 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL---PENPRICFNKNGTLLAVIANENRIKILETP  653 (1093)
Q Consensus       577 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  653 (1093)
                          .-..++  .|+..++.+....+++.-|.++.....++......   ...+.+.|- +|...|-.-.+..|...+..
T Consensus       132 ----eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~  204 (262)
T COG3823         132 ----EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPD  204 (262)
T ss_pred             ----cceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCC
Confidence                233333  35566777776777887787765554443322111   112333332 45555544444455555555


Q ss_pred             CCcee
Q 001352          654 ESNSV  658 (1093)
Q Consensus       654 ~~~~~  658 (1093)
                      +++.+
T Consensus       205 sGrV~  209 (262)
T COG3823         205 SGRVV  209 (262)
T ss_pred             CCcEE
Confidence            55433

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=85.63  E-value=18  Score=40.88  Aligned_cols=113  Identities=11%  Similarity=0.066  Sum_probs=61.3

Q ss_pred             cCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCC------CEEEEE--e--
Q 001352          887 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLLV--H--  956 (1093)
Q Consensus       887 ~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg------~~l~~~--~--  956 (1093)
                      -...+.|+|.|||++|++--..|.|++++-.++.......+..... .........++|+|+-      .+|.++  .  
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~-~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~  107 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN-DAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN  107 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec-cCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence            3457889999999888876556999999866543211111110000 0012468899999884      344442  1  


Q ss_pred             -------CCeEEEEEcCCc--c--eeeeeecC----CCCCEEEEEEccCCCEEEEEeCC
Q 001352          957 -------ETHLAIYEAEEL--T--CLKQWFPI----SSVPISQATFSCDCRMVFTSFVD 1000 (1093)
Q Consensus       957 -------d~~i~vwd~~~~--~--~~~~~~~~----h~~~v~~~~fs~dg~~l~t~~~d 1000 (1093)
                             ...|.-|.+...  .  ....++.+    ....-..++|.|||.++++.+..
T Consensus       108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                   223444554321  1  01111211    01224457899999877766654

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=85.45  E-value=5.8  Score=40.15  Aligned_cols=74  Identities=9%  Similarity=-0.045  Sum_probs=55.8

Q ss_pred             EEEccCCCEEEE-EeCCeEEEEEcCCcceeeee------ec-------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001352          943 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1008 (1093)
Q Consensus       943 ~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~------~~-------~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~ 1008 (1093)
                      +.+..++.+|++ ..+|.+++||+.+++.+..-      ..       .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            446677777776 89999999999998765442      21       2457889999999998888765 588999998


Q ss_pred             CCCceEEEe
Q 001352         1009 SNLEVQCRI 1017 (1093)
Q Consensus      1009 ~~~~~~~~~ 1017 (1093)
                      +-+....-.
T Consensus        95 ~L~~W~~vs  103 (219)
T PF07569_consen   95 DLGCWIRVS  103 (219)
T ss_pred             ccceeEEec
Confidence            877655433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=85.06  E-value=3.8  Score=41.42  Aligned_cols=74  Identities=9%  Similarity=0.100  Sum_probs=51.5

Q ss_pred             EeCCCCEEEEEeCCCcEEEEeCCCCceeeee-e-eecCCCcc----cCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCc
Q 001352          895 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR-S-LQTPDGVM----TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL  968 (1093)
Q Consensus       895 ~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~-~-~~~~~~~~----~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~  968 (1093)
                      +..++++|+..+.+|.+++||+.+++..... . ........    .....|..+.++.+|.-+++-.+|..+.|+..=+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~   97 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG   97 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence            4457889999999999999999987644322 1 11111100    1224688999999999888877788899987533

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PLN02193 nitrile-specifier protein

Probab=84.79  E-value=84  Score=36.43  Aligned_cols=153  Identities=8%  Similarity=-0.018  Sum_probs=72.4

Q ss_pred             EEEEEcCC-----CcEEEEECCCCceeEEeecC--CCCe--EEeeecccCCccEEEEEecCC-----eEEEEEcCCCCce
Q 001352          458 SVITCGDD-----KTIKVWDAVTGSRTYSFEGH--GAPV--YSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGAR  523 (1093)
Q Consensus       458 ~l~s~~~d-----~~i~vwd~~~~~~~~~~~~h--~~~v--~~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~  523 (1093)
                      +++.|+.+     ..+.++|+.+.+-...-...  ..+.  .+++.  . ++.+.+.|+.++     .+..||+.+.+-.
T Consensus       231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~  307 (470)
T PLN02193        231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--D-EENVYVFGGVSATARLKTLDSYNIVDKKWF  307 (470)
T ss_pred             EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--E-CCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence            55666654     35888898876543311100  1111  11211  1 345666666543     3566776553321


Q ss_pred             EEecC----CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeec--ccccCCCeEEEEEcCCCCEEEEE
Q 001352          524 VDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTAKDQILAA  597 (1093)
Q Consensus       524 ~~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~  597 (1093)
                      . ...    +.......+..-+++..+.++.++.....+.+||+.+.+....-..  .........++.+  +++.++.|
T Consensus       308 ~-~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~G  384 (470)
T PLN02193        308 H-CSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVIFG  384 (470)
T ss_pred             e-CCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEEEC
Confidence            1 111    0111111112235666666664433235589999988765433211  0100111222222  45566666


Q ss_pred             eCC--------------CcEEEEECCCCceEEE
Q 001352          598 GDD--------------HVIKIWDMNKVQLLTT  616 (1093)
Q Consensus       598 ~~d--------------g~i~iwd~~~~~~~~~  616 (1093)
                      +..              ..+.+||+.+.+....
T Consensus       385 G~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~  417 (470)
T PLN02193        385 GEIAMDPLAHVGPGQLTDGTFALDTETLQWERL  417 (470)
T ss_pred             CccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence            643              2478899988776543

>PRK13613 lipoprotein LpqB; Provisional

Probab=84.75  E-value=94  Score=36.95  Aligned_cols=225  Identities=12%  Similarity=0.077  Sum_probs=0.0

Q ss_pred             CCeEEEEE------ccCceeEEEECCCCC-CeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCcce----eeecccccCCe
Q 001352          823 GGVISLYI------VMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEV----ISKLEGHSKRV  890 (1093)
Q Consensus       823 dg~i~iwd------~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg-~i~iwd~~~~~~----~~~l~~h~~~V  890 (1093)
                      +|.+...+      -.....+.-..+... .+.+.+.++ ++..+|....++ .+++..+..+..    ..... -...+
T Consensus       334 ~G~~~~~~~~~~~~~~~~~pv~g~~g~~~~~~~s~avS~-~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~L  411 (599)
T PRK13613        334 DGQLWLLRISGTSNGTDPEPVPGALGSGRVPLRRVAVSR-DESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRL  411 (599)
T ss_pred             CCceEEEeccccccCCCcccCCCccCCCCCCccceEEcC-CCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcc


Q ss_pred             EEEEEeCCCCEEEEEeC----CCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeC----CeEEE
Q 001352          891 TGLVFSDALNILVSSGG----DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE----THLAI  962 (1093)
Q Consensus       891 ~~l~~s~dg~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d----~~i~v  962 (1093)
                      +.-.|.++| .+-+...    ...+++..- +++....... .+.+..     |+.+..|+||..+|.-.+    ++|.|
T Consensus       412 t~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~G~~~~V~~~-~l~g~~-----I~~lrvSrDG~RvAvv~~~~g~~~v~v  483 (599)
T PRK13613        412 TSPSWDGRG-DLWVVDRDPADPRLLWLLQG-DGEPVEVRTP-ELDGHR-----VVAVRVARDGVRVALIVEKDGRRSLQI  483 (599)
T ss_pred             cCCcCcCCC-CEEEecCCCCCceEEEEEcC-CCcEEEeecc-ccCCCE-----eEEEEECCCccEEEEEEecCCCcEEEE


Q ss_pred             EEcCCcc-------eeeeeecCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEEcCCCceEEEeccccccCCCCCCCccce
Q 001352          963 YEAEELT-------CLKQWFPISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1034 (1093)
Q Consensus       963 wd~~~~~-------~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1034 (1093)
                      --+....       ....+...... +.++.|..++.+++.+...+ ...+|-+.-+-..............      ..
T Consensus       484 a~V~R~~~G~~~l~~~~~l~~~l~~-v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~------~~  556 (599)
T PRK13613        484 GRIVRDAKAVVSVEEFRSLAPELED-VTDMSWAGDSQLVVLGREEGGVQQARYVQVDGSTPPASAPAAVTGV------ES  556 (599)
T ss_pred             EEEEeCCCCcEEeeccEEeccCCCc-cceeEEcCCCEEEEEeccCCCCcceEEEecCCcCcccccccCCCCe------eE


Q ss_pred             eEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCCcc
Q 001352         1035 HAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWA 1069 (1093)
Q Consensus      1035 ~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~ 1069 (1093)
                      +..+-.+  +..|+++..++.|...   .++..|.
T Consensus       557 ia~~~~~--~~~~v~~~~~~~v~~~---~~g~~W~  586 (599)
T PRK13613        557 ITASEDE--RLPLVAGTSEDGIVRL---SSGLQWQ  586 (599)
T ss_pred             EEecCCC--CceEEEEecCCCeEEe---cCCCcce

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=84.15  E-value=53  Score=33.62  Aligned_cols=166  Identities=8%  Similarity=0.078  Sum_probs=90.9

Q ss_pred             eeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCC-CCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 001352          792 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTIL  870 (1093)
Q Consensus       792 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~~lasg~~dg~i~  870 (1093)
                      ...+.++............|.++|.+-.++..|.---.|..+ ..+..+... ...-..++..| ||.+-++.-.+..|-
T Consensus       136 vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atp-dGsvwyaslagnaia  213 (353)
T COG4257         136 VTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQGGGPYGICATP-DGSVWYASLAGNAIA  213 (353)
T ss_pred             eEEeecccccCCCcccceeeCCCccEEEeeccccceecCccc-CceeeeccCCCCCCcceEECC-CCcEEEEeccccceE
Confidence            334444443356677788999999999988643211112111 122233222 23456788889 888888777777787


Q ss_pred             EEEcCCcc--eeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccC
Q 001352          871 IYNARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  948 (1093)
Q Consensus       871 iwd~~~~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d  948 (1093)
                      ..|..++.  .+..-.+....-..+.-+|.|+.-+|....+.+.-+|-+...   ......+....    .-.++.....
T Consensus       214 ridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s---W~eypLPgs~a----rpys~rVD~~  286 (353)
T COG4257         214 RIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS---WIEYPLPGSKA----RPYSMRVDRH  286 (353)
T ss_pred             EcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc---ceeeeCCCCCC----CcceeeeccC
Confidence            77877662  222222212234445556778888887777777777766532   11122221111    2445555555


Q ss_pred             CCEEEE-EeCCeEEEEEcC
Q 001352          949 QTRFLL-VHETHLAIYEAE  966 (1093)
Q Consensus       949 g~~l~~-~~d~~i~vwd~~  966 (1093)
                      ++.-+. ...+.|.-+|.+
T Consensus       287 grVW~sea~agai~rfdpe  305 (353)
T COG4257         287 GRVWLSEADAGAIGRFDPE  305 (353)
T ss_pred             CcEEeeccccCceeecCcc
Confidence            554444 333445555544

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=84.06  E-value=69  Score=34.90  Aligned_cols=111  Identities=8%  Similarity=-0.029  Sum_probs=55.3

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCcee-eeeeeecCCCcccCCCCceEEEEccCCCEEEEEe------CCeEEEEEc
Q 001352          898 ALNILVSSGGDA-----QIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH------ETHLAIYEA  965 (1093)
Q Consensus       898 dg~~l~s~s~dg-----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~------d~~i~vwd~  965 (1093)
                      ++++++.|+.++     .+..+|+.+.+.. ....+......     .-...+..-++++.+.|.      ...+..||+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-----~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~  146 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-----FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL  146 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-----ccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence            566777777643     4666677664421 00111111110     111222234566656542      136888998


Q ss_pred             CCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCc----EEEEEcCCCce
Q 001352          966 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT----LSIHEASNLEV 1013 (1093)
Q Consensus       966 ~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~----v~vwd~~~~~~ 1013 (1093)
                      .+.+-...-......+....+...++++.+.|+.++.    +..||..+.+.
T Consensus       147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            8765432211111122233334557788888887643    45788877654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=84.01  E-value=26  Score=40.55  Aligned_cols=194  Identities=14%  Similarity=0.132  Sum_probs=102.1

Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 001352          845 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC  924 (1093)
Q Consensus       845 ~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~  924 (1093)
                      ..++++.-+| +++-++.+..||+|++|+....+...... ...+-..+.|...|  |+++..|+.+.-|.-++--..  
T Consensus        15 e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvqq--   88 (1636)
T KOG3616|consen   15 EFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKEDGVVQQ--   88 (1636)
T ss_pred             ceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeeccCcchh--
Confidence            3567777889 99999999999999999987654322211 22344556776554  566666777777765441100  


Q ss_pred             eeeecCCCcccCCCCceEEEEccCC-------------------------CEEEE-EeCCeEEEEEcCCcceeeeeecCC
Q 001352          925 RSLQTPDGVMTLAPSETHIQFHKDQ-------------------------TRFLL-VHETHLAIYEAEELTCLKQWFPIS  978 (1093)
Q Consensus       925 ~~~~~~~~~~~~~~~v~~~~~s~dg-------------------------~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h  978 (1093)
                          .+.-.........++...|..                         ++-.+ .....|.+-|+.++..... . .|
T Consensus        89 ----qfdyndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l-~-s~  162 (1636)
T KOG3616|consen   89 ----QFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNL-I-SH  162 (1636)
T ss_pred             ----hccccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEee-e-ec
Confidence                000000000012222222221                         22222 3344566666666554432 2 23


Q ss_pred             -CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCcc---ceeEEEeCCCCCCEEEEEeCCC
Q 001352          979 -SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHV---YPHAIAAHPLKPTQFAVGLTNG 1054 (1093)
Q Consensus       979 -~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~p~d~~~l~~~~~dg 1054 (1093)
                       .-.|..+..-...+|++. -...+|.+=|+.+.+..    -..|...+.|..-.   ..+|+.|.. ..-.++-=+.|+
T Consensus       163 ~g~aidelkilgkdryli~-~ts~siii~d~es~rfs----ei~wqgsgg~ekfffd~~n~cli~na-geltlveyg~d~  236 (1636)
T KOG3616|consen  163 KGLAIDELKILGKDRYLIA-HTSESIIIADLESNRFS----EIAWQGSGGHEKFFFDFENCCLIFNA-GELTLVEYGNDD  236 (1636)
T ss_pred             CCcchhhhhhccccceEEe-eccccEEEeecccchhh----hhhcccCCCcceeeeecCcEEEEEec-CeeEEEEecCCC
Confidence             345555555566677774 44567888888876443    33354444333221   135666765 234455445555


Q ss_pred             cE
Q 001352         1055 EV 1056 (1093)
Q Consensus      1055 ~v 1056 (1093)
                      ++
T Consensus       237 sl  238 (1636)
T KOG3616|consen  237 SL  238 (1636)
T ss_pred             cc
Confidence            54

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.12  E-value=5.3  Score=38.77  Aligned_cols=31  Identities=39%  Similarity=0.606  Sum_probs=25.8

Q ss_pred             CCeEEEEECCCC------CEEEEEEcCCEEEEEEccC
Q 001352          398 VSVNRVVWSPDG------SLLGVAYSKHIVQLYAYHG  428 (1093)
Q Consensus       398 ~~V~~v~~s~dg------~~las~~~d~~i~iwd~~~  428 (1093)
                      ..|.+++|||-|      -+||+.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            389999999954      4788889999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.05  E-value=4.7  Score=27.84  Aligned_cols=29  Identities=10%  Similarity=0.202  Sum_probs=24.1

Q ss_pred             CCCceEEEEEccCCcEEEEecCCCceeEE
Q 001352          345 PVQHTLLLVGTNVGDTGLWDVNSGQKLFI  373 (1093)
Q Consensus       345 pdg~~llasg~~dg~i~iwd~~~~~~~~~  373 (1093)
                      ||+++++++...+++|.++|..+++.+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~   29 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIAT   29 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            68888787777789999999998877654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.88  E-value=30  Score=43.83  Aligned_cols=32  Identities=28%  Similarity=0.573  Sum_probs=27.2

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCc
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ  369 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~  369 (1093)
                      ....++|+|.-+ ++|.|+..|.|.++-...-+
T Consensus        37 ~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve   68 (993)
T KOG1983|consen   37 TPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVE   68 (993)
T ss_pred             CCcceeeccccc-eEEEEEecccEEEecccceE
Confidence            667899999998 79999999999999865543

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=82.75  E-value=4.2  Score=47.91  Aligned_cols=135  Identities=13%  Similarity=0.120  Sum_probs=78.2

Q ss_pred             CceeeeecCC-CceEEEEEccCCcEEEEecCCCceeEEeeeeeeeccc--ccceeeeeeecCCCCCeEEEEEC--CCCCE
Q 001352          337 SPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGA--CSMLFKTALVRDPGVSVNRVVWS--PDGSL  411 (1093)
Q Consensus       337 ~V~~~~~spd-g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~V~~v~~s--~dg~~  411 (1093)
                      .|+.+....= +..+|+.+..||.|.+|.+++=.......  .-+...  .....+..+...-...+..++++  ...++
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rl  179 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRL  179 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceE
Confidence            4555554432 23478888999999999774310000000  000000  00001111122245588999998  78889


Q ss_pred             EEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCC----cEEEEEEcCCCcEEEEEC
Q 001352          412 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK----QISVITCGDDKTIKVWDA  473 (1093)
Q Consensus       412 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~----~l~l~s~~~d~~i~vwd~  473 (1093)
                      ||+++....|.||-......-.....-..|...|.+|+|.++..    ...+++++-.|.+.+|++
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            99998888888886655211111111113667899999987651    136888999999999886

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=82.41  E-value=8  Score=37.54  Aligned_cols=31  Identities=13%  Similarity=0.235  Sum_probs=26.3

Q ss_pred             CCeEEEEEeCCC------CEEEEEeCCCcEEEEeCCC
Q 001352          888 KRVTGLVFSDAL------NILVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       888 ~~V~~l~~s~dg------~~l~s~s~dg~i~iwd~~~  918 (1093)
                      ..|.+++|||-|      .+||+...++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            479999999954      5788999999999998775

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=81.62  E-value=81  Score=33.93  Aligned_cols=241  Identities=14%  Similarity=0.003  Sum_probs=116.9

Q ss_pred             cCCCceEEEEEccCCcEEEEecCC--CceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc-CCE
Q 001352          344 HPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KHI  420 (1093)
Q Consensus       344 spdg~~llasg~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~-d~~  420 (1093)
                      .-+++ .|+.|+.+|... -+...  ++..+                     -.+...|+++...+.-+.|++-++ ...
T Consensus        10 ~~~~~-~lL~GTe~Gly~-~~~~~~~~~~~k---------------------l~~~~~v~q~~v~~~~~lLi~Lsgk~~~   66 (302)
T smart00036       10 TCDGK-WLLVGTEEGLYV-LNISDQPGTLEK---------------------LIGRRSVTQIWVLEENNVLLMISGKKPQ   66 (302)
T ss_pred             ccCCc-EEEEEeCCceEE-EEcccCCCCeEE---------------------ecCcCceEEEEEEhhhCEEEEEeCCcce
Confidence            33444 488888888544 44543  22222                     125678999999998877776653 345


Q ss_pred             EEEEEccCCCc-----------ccc-eEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC----ceeEEe--
Q 001352          421 VQLYAYHGGSD-----------ARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSF--  482 (1093)
Q Consensus       421 i~iwd~~~~~~-----------~~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~--  482 (1093)
                      ++++++..-..           .+. ....-+|......++... ++...++.+....+|.++.+...    ...+.+  
T Consensus        67 L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~-~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~  145 (302)
T smart00036       67 LYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVN-GKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFL  145 (302)
T ss_pred             EEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEc-CCCcEEEEEEcCCeEEEEEccChhhhhhhhccccc
Confidence            99999843221           000 001124444444444443 33324455555667777654322    111111  


Q ss_pred             -e-cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC--CC--c-eE--EecCCCCceEEEEEccCCCEEEEEecCCC
Q 001352          483 -E-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS--LG--A-RV--DYDAPGLGCTRMAYSANGRRLFSCGTSKE  553 (1093)
Q Consensus       483 -~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~--~~--~-~~--~~~~~~~~v~~~~~s~d~~~l~~~~~~~~  553 (1093)
                       . .-..++..+..........+..|+..+...++++..  ..  . ..  ..........++..-+++.+|++-     
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~-----  220 (302)
T smart00036      146 FPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCY-----  220 (302)
T ss_pred             ccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEE-----
Confidence             0 112233333333333344666776643344444432  10  0 00  011111023333334455565554     


Q ss_pred             CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 001352          554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA  619 (1093)
Q Consensus       554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  619 (1093)
                       +......|.......+...-.  -.....++++.  ..++++-+.+ .|.|+++.+++.++++..
T Consensus       221 -~~~~v~Vn~~G~~~~r~~~l~--w~~~p~~~~~~--~pyll~~~~~-~ievr~l~~~~l~q~i~~  280 (302)
T smart00036      221 -DEFGVFVNLYGKRRSRNPILH--WEFMPESFAYH--SPYLLAFHDN-GIEIRSIKTGELLQELAD  280 (302)
T ss_pred             -CcEEEEEeCCCCccccceEEE--cCCcccEEEEE--CCEEEEEcCC-cEEEEECCCCceEEEEec
Confidence             223444454321221111100  01345566665  3677776654 599999999999888864

Unpublished observations.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1093
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-12
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		8e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		9e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		9e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		9e-08
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		8e-08
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-07
2h9l_A	329	Wdr5delta23 Length = 329		2e-09
2h9l_A	329	Wdr5delta23 Length = 329		1e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		9e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		4e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		6e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		8e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		9e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		9e-05
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		7e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		8e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 131/554 (23%), Positives = 231/554 (41%), Gaps = 95/554 (17%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE-IDAHVGNVNDLAFSAPCKQI 457
           SV  V +SPDG  +  A     V+L+  +G     Q L+ +  H  +V  +AFS P  Q 
Sbjct: 59  SVWGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFS-PDGQ- 111
Query: 458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAW 515
           ++ +  DDKT+K+W+   G    +  GH + V+ +   P  +     I S S D  +K W
Sbjct: 112 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT----IASASDDKTVKLW 166
Query: 516 LYDS--LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 573
             +   L     + +   G   +A+S +G+ + S    K     +  WN   G + +T  
Sbjct: 167 NRNGQLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLT 218
Query: 574 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPEN 626
           G     +SV  V F      I +A DD  +K+W+ N  QLL T+             P+ 
Sbjct: 219 G---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDG 274
Query: 627 PRIC----------FNKNGTLLAVIANENR--IKILETPESNSVDAAGVLSDN----LRK 670
             I           +N+NG LL  +   +     +  +P+  ++ +A   SD+    L  
Sbjct: 275 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA---SDDKTVKLWN 331
Query: 671 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 730
            +   + T+TG   +   V+ + D +      I+  +++K+     L+ R  +   LL  
Sbjct: 332 RNGQHLQTLTGHSSSVWGVAFSPDGQT-----IASASDDKTV---KLWNRNGQ---LLQT 380
Query: 731 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 790
               ++ +  + ++  GQ I + + +    +W                        R+G 
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-----------------------RNG- 416
Query: 791 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 850
           Q +   T  S+S   V   A S +D  + SAS            + + T+   S +   +
Sbjct: 417 QLLQTLTGHSSS---VWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 473
Query: 851 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 910
           AF+P D   IA   DD T+ ++N R+ +++  L GHS  V G+ FS     + S+  D  
Sbjct: 474 AFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 531
Query: 911 IFVWDVDGWGIQTC 924
           + +W+ +G  +QT 
Sbjct: 532 VKLWNRNGQLLQTL 545

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 837 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 896
           + T+   S +   +AF+P D   IA   DD T+ ++N R+ +++  L GHS  V G+ FS
Sbjct: 50  LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 107
Query: 897 DALNILVSSGGDAQIFVWDVDGWGIQTC 924
                + S+  D  + +W+ +G  +QT 
Sbjct: 108 PDGQTIASASDDKTVKLWNRNGQLLQTL 135

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 47  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213
Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 773  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 831
            + + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 20   SSSATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 74
Query: 832  MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 891
               K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 75   YDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 133
Query: 892  GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 951
               F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D + 
Sbjct: 134  CCNFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS- 184
Query: 952  FLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1008
             L+V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + 
Sbjct: 185  -LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 243
Query: 1009 S 1009
            S
Sbjct: 244  S 244

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 49  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 215
Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 216 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 253

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 773  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 831
            + + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 22   SSSATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 76
Query: 832  MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 891
               K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 77   YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 135
Query: 892  GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 951
               F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D + 
Sbjct: 136  CCNFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS- 186
Query: 952  FLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1008
             L+V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + 
Sbjct: 187  -LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 245
Query: 1009 S 1009
            S
Sbjct: 246  S 246

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 781  PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILT 839
            P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   T
Sbjct: 12   PTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 66
Query: 840  IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 899
            I       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   
Sbjct: 67   ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 125
Query: 900  NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 959
            N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++
Sbjct: 126  NLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSY 175
Query: 960  ---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009
                 I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 176  DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 775  ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 833
            + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 6    SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 834  FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 893
             K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 61   GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
Query: 894  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 953
             F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 120  NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 169
Query: 954  LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009
            +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 170  IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 26  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 82  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 139 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 192
Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 193 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 230

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 775  ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 833
             +T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 1    GSTQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 55
Query: 834  FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 893
             K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 56   GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 114
Query: 894  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 953
             F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 115  NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 164
Query: 954  LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009
            +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 165  IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 223

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 21  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 77  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 187
Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 781  PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILT 839
            P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   T
Sbjct: 2    PTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 56
Query: 840  IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 899
            I       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   
Sbjct: 57   ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 115
Query: 900  NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 959
            N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++
Sbjct: 116  NLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSY 165
Query: 960  ---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009
                 I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 166  DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 218

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 191
Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 777  TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 835
            T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K
Sbjct: 2    TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
Query: 836  TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 895
               TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F
Sbjct: 57   FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 896  SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 955
            +   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V
Sbjct: 116  NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 165
Query: 956  HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009
              ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 166  SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 191
Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 777  TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 835
            T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K
Sbjct: 2    TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
Query: 836  TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 895
               TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F
Sbjct: 57   FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 896  SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 955
            +   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V
Sbjct: 116  NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 165
Query: 956  HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009
              ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 166  SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 24  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 80  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 137 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 190
Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 191 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 228

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 785  QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 843
            +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   TI   
Sbjct: 9    KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 63
Query: 844  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 903
                + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 64   KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 122
Query: 904  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 960
            S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 123  SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 172
Query: 961  AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009
             I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 173  RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 221

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 119/263 (45%), Gaps = 24/263 (9%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN---- 634
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N    
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVT 250
Query: 635 -GTLLAVIANENRIKI--LETPE 654
            G  +   + +N + I  L+T E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 22/242 (9%)
Query: 773  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 831
            + + T+  P   +P +   F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 1    SSSATQSKPTPVKPNYALMFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 55
Query: 832  MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 891
               K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 56   YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 892  GLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 950
               F+   N++VS   D  + +WDV  G  ++T  +   P          + + F++D +
Sbjct: 115  CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP---------VSAVHFNRDGS 165
Query: 951  RFLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1007
              L+V  ++     I++     CLK      + P+S   FS + + +  + +D TL + +
Sbjct: 166  --LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 1008 AS 1009
             S
Sbjct: 224  YS 225

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 775  ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 833
            + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 6    SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 834  FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 893
             K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 61   GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
Query: 894  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 953
             F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 120  NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 169
Query: 954  LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009
            +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 170  IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 42  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 98  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 155 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 208
Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 209 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 246

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 777  TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 835
            T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K
Sbjct: 19   TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 73
Query: 836  TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 895
               TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F
Sbjct: 74   FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 132
Query: 896  SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 955
            +   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V
Sbjct: 133  NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 182
Query: 956  HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009
              ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 183  SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 239

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 30  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 86  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 143 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 196
Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 197 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 234

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 775  ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 833
            + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 5    SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 59
Query: 834  FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 893
             K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 60   GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 118
Query: 894  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 953
             F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 119  NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 168
Query: 954  LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009
            +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 169  IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 227

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLAASSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 634
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 785  QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 843
            +P +  +F +   T     +AV     S N  +L ++S   +I ++     K   TI   
Sbjct: 13   KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH 67
Query: 844  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 903
                + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 68   KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 904  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 960
            S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 127  SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 961  AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009
             I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 177  RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 634
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 785  QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 843
            +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   TI   
Sbjct: 13   KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 844  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 903
                + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 68   KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 904  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 960
            S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 127  SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 961  AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009
             I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 177  RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 634
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 785  QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 843
            +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   TI   
Sbjct: 13   KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 844  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 903
                + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 68   KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 904  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 960
            S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 127  SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 961  AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009
             I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 177  RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 119/263 (45%), Gaps = 24/263 (9%)
Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN---- 634
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N    
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVT 250
Query: 635 -GTLLAVIANENRIKI--LETPE 654
            G  +   + +N + I  L+T E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 107/242 (44%), Gaps = 22/242 (9%)
Query: 773  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIV 831
            + + T+  P   +P +   F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 1    SSSATQSKPTPVKPNYALMFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 55
Query: 832  MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 891
               K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 56   YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 892  GLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 950
               F+   N++VS   D  + +WDV  G  ++T  +   P          + + F++D +
Sbjct: 115  CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP---------VSAVHFNRDGS 165
Query: 951  RFLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1007
              L+V  ++     I++     CLK      + P+S   FS + + +  + +D  L + +
Sbjct: 166  --LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Query: 1008 AS 1009
             S
Sbjct: 224  YS 225

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 808 CFALSKNDAYLFSASGGVISLYIVMTF-------KTILTIMPPSPTATSLAFNPHDNNVI 860
           C    K  A +  ASGG    ++V+         K +  +   +     +A+ PH++NVI
Sbjct: 40  CAVNPKFMALIXEASGG--GAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVI 97
Query: 861 AIGMDDSTILIYNARSS-------EVISKLEGHSKRVTGLV--FSDALNILVSSGGDAQI 911
           A G +D T++++            E +  LEGH+KRV G+V     A N+L+S+G D  I
Sbjct: 98  ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV-GIVAWHPTAQNVLLSAGXDNVI 156
Query: 912 FVWDV 916
            VWDV
Sbjct: 157 LVWDV 161

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 808 CFALSKNDAYLFSASGGVISLYIVMTF-------KTILTIMPPSPTATSLAFNPHDNNVI 860
           C    K  A +  ASGG    ++V+         K +  +   +     +A+ PH++NVI
Sbjct: 40  CAVNPKFMALICEASGG--GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVI 97
Query: 861 AIGMDDSTILIYNARSS-------EVISKLEGHSKRVTGLV--FSDALNILVSSGGDAQI 911
           A G +D T++++            E +  LEGH+KRV G+V     A N+L+S+G D  I
Sbjct: 98  ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV-GIVAWHPTAQNVLLSAGCDNVI 156
Query: 912 FVWDV 916
            VWDV
Sbjct: 157 LVWDV 161

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 122/624 (19%), Positives = 231/624 (37%), Gaps = 111/624 (17%)
Query: 392  LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 451
            +VR    +V    +S DG  +    +   +Q++    G    + L+I AH   V   AFS
Sbjct: 610  VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFS 666
Query: 452  APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDG 510
            +    I+  TC  DK +K+WD+ TG   ++++ H   V + C    ++ H + +  S D 
Sbjct: 667  SDDSYIA--TCSADKKVKIWDSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLATGSNDF 723
Query: 511  KIKAWLYDSLGAR---------VDY-----------DAPGLGCTRM--AYSANGR----- 543
             +K W  +    R         V++                G  R+    SAN R     
Sbjct: 724  FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 783
Query: 544  -RLF---------------SCGTSKEGESFLVEWN--------ESEGAIKRTYQGLQLQH 579
             R F                C  S +G+  +V            + G +   + G    H
Sbjct: 784  KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG---HH 840
Query: 580  NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 639
            +++    F       + A   + +++W+++    L   D  G L     + F+ +G+   
Sbjct: 841  STIQYCDFSPYDHLAVIALSQYCVELWNID--SRLKVADCRGHLSWVHGVMFSPDGSSFL 898
Query: 640  VIANENRIKILETPESNSVDAAGVLSDNL------RKLSVNPISTVTGAG-IANGSVSVN 692
              +++  I++ ET +    ++A VL   +       +  V  +  + G   IA  +  ++
Sbjct: 899  TASDDQTIRVWETKKVCK-NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 957
Query: 693  EDPKEDV-----KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR-LTYNNG 746
              P+  V      P +   A    +    +   P+   + +  S V   K  R + +   
Sbjct: 958  YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHKKAVRHIQFTAD 1014
Query: 747  GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 806
            G+ + + + + V  +W W   D              ++   H              QE V
Sbjct: 1015 GKTLISSSEDSVIQVWNWQTGDY-------------VFLQAH--------------QETV 1047
Query: 807  PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 866
              F L ++   L  +  G + ++ V+T +          T  S A +  D    +    D
Sbjct: 1048 KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSAD 1106
Query: 867  STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWDV-DGWGIQTC 924
             T  I++      + +L+GH+  V    FS    IL+++G D  +I +W+V DG  + +C
Sbjct: 1107 KTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSC 1165
Query: 925  RSLQTPDGVMTLAPSETHIQFHKD 948
              +   +G  T     T + F  D
Sbjct: 1166 APISVEEGTATHGGWVTDVCFSPD 1189

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 122/624 (19%), Positives = 231/624 (37%), Gaps = 111/624 (17%)
Query: 392  LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 451
            +VR    +V    +S DG  +    +   +Q++    G    + L+I AH   V   AFS
Sbjct: 617  VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFS 673
Query: 452  APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDG 510
            +    I+  TC  DK +K+WD+ TG   ++++ H   V + C    ++ H + +  S D 
Sbjct: 674  SDDSYIA--TCSADKKVKIWDSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLATGSNDF 730
Query: 511  KIKAWLYDSLGAR---------VDY-----------DAPGLGCTRM--AYSANGR----- 543
             +K W  +    R         V++                G  R+    SAN R     
Sbjct: 731  FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 790
Query: 544  -RLF---------------SCGTSKEGESFLVEWN--------ESEGAIKRTYQGLQLQH 579
             R F                C  S +G+  +V            + G +   + G    H
Sbjct: 791  KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG---HH 847
Query: 580  NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 639
            +++    F       + A   + +++W+++    L   D  G L     + F+ +G+   
Sbjct: 848  STIQYCDFSPYDHLAVIALSQYCVELWNID--SRLKVADCRGHLSWVHGVMFSPDGSSFL 905
Query: 640  VIANENRIKILETPESNSVDAAGVLSDNL------RKLSVNPISTVTGAG-IANGSVSVN 692
              +++  I++ ET +    ++A VL   +       +  V  +  + G   IA  +  ++
Sbjct: 906  TASDDQTIRVWETKKVCK-NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 964
Query: 693  EDPKEDV-----KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR-LTYNNG 746
              P+  V      P +   A    +    +   P+   + +  S V   K  R + +   
Sbjct: 965  YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHKKAVRHIQFTAD 1021
Query: 747  GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 806
            G+ + + + + V  +W W   D              ++   H              QE V
Sbjct: 1022 GKTLISSSEDSVIQVWNWQTGDY-------------VFLQAH--------------QETV 1054
Query: 807  PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 866
              F L ++   L  +  G + ++ V+T +          T  S A +  D    +    D
Sbjct: 1055 KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSAD 1113
Query: 867  STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWDV-DGWGIQTC 924
             T  I++      + +L+GH+  V    FS    IL+++G D  +I +W+V DG  + +C
Sbjct: 1114 KTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSC 1172
Query: 925  RSLQTPDGVMTLAPSETHIQFHKD 948
              +   +G  T     T + F  D
Sbjct: 1173 APISVEEGTATHGGWVTDVCFSPD 1196

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 465 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--- 521
           D T+++WD  TG+ T  F GH   V S+   + +N   I S S D  IK W  ++LG   
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 162
Query: 522 --ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 579
              + +  +  + C R + +++   + SCG  K     +  WN +   +K  + G     
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK----LVKVWNLANCKLKTNHIGHTGYL 218
Query: 580 NSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 637
           N+V+V     + D  L A  G D    +WD+N+ + L T+D G  +     +CF+ N   
Sbjct: 219 NTVTV-----SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA---LCFSPNRYW 270
Query: 638 LAVIANENRIKILE 651
           L   A    IKI +
Sbjct: 271 LCA-ATGPSIKIWD 283

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 465 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--- 521
           D T+++WD  TG+ T  F GH   V S+   + +N   I S S D  IK W  ++LG   
Sbjct: 84  DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 139
Query: 522 --ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 579
              + +  +  + C R + +++   + SCG  K     +  WN +   +K  + G     
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK----LVKVWNLANCKLKTNHIGHTGYL 195
Query: 580 NSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 637
           N+V+V     + D  L A  G D    +WD+N+ + L T+D G  +     +CF+ N   
Sbjct: 196 NTVTV-----SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA---LCFSPNRYW 247
Query: 638 LAVIANENRIKILE 651
           L   A    IKI +
Sbjct: 248 LCA-ATGPSIKIWD 260

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 124/315 (39%), Gaps = 49/315 (15%)
Query: 323 FPKTVAQTLIEGSSSPMS-MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI 381
            P+   +  + G  SP++ + FHPV  ++++  +      +WD  +G   F R  K    
Sbjct: 95  IPRPPEKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGD--FERTLK---- 147
Query: 382 GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH 441
                            SV  + +   G LL    +   ++L+ + G    R    +  H
Sbjct: 148 -------------GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT---MHGH 191
Query: 442 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 501
             NV+ ++       I  ++   DKTIK+W+  TG    +F GH   V  + P+  ++  
Sbjct: 192 DHNVSSVSIMPNGDHI--VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN--QDGT 247
Query: 502 FIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMA----YSANGRRLFSCGTSKEGE 555
            I S S D  ++ W+  +   + +       + C   A    YS+      S  T K G+
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS-ETKKSGK 306
Query: 556 --SFLVE---------WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 604
              FL+          W+ S G    T  G     N V  V F +    IL+  DD  ++
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHSGGKFILSCADDKTLR 363
Query: 605 IWDMNKVQLLTTIDA 619
           +WD    + + T++A
Sbjct: 364 VWDYKNKRCMKTLNA 378

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 125/312 (40%), Gaps = 58/312 (18%)
Query: 355 TNVGDTG-LWDVNSGQKLFI-----RNFKVW--DIGAC--SMLFKTALVRDPGVSVNRVV 404
           T VG TG +W       + I     R  KVW  + G C  ++   T+ VR   +   RVV
Sbjct: 154 TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 213
Query: 405 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 464
                + L V   +    L+   G            HV  V  + +        V++   
Sbjct: 214 SGSRDATLRVWDIETGQCLHVLMG------------HVAAVRCVQYDGR----RVVSGAY 257
Query: 465 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 524
           D  +KVWD  T +  ++ +GH   VYSL     + IH + S S+D  I+ W         
Sbjct: 258 DFMVKVWDPETETCLHTLQGHTNRVYSL---QFDGIHVV-SGSLDTSIRVW--------- 304
Query: 525 DYDAPGLGCTRMAYSANGRRLFSCG--------TSKEGESFLVEWNESEGAIKRTYQGLQ 576
             D     C    ++  G +  + G         S   +S +  W+   G   +T QG  
Sbjct: 305 --DVETGNCI---HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPN 359
Query: 577 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---VQLLTTIDAGGGLPENPRICFNK 633
              ++V+ + F+  K+ ++ + DD  +K+WD+     ++ L T+++GG      RI    
Sbjct: 360 KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI-RAS 416
Query: 634 NGTLLAVIANEN 645
           N  L+  + + N
Sbjct: 417 NTKLVCAVGSRN 428

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 834 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---------DSTILIYNARSSEVISKLE 884
           +  ++ +  P           H N V ++  D         D++I +++  +   I  L 
Sbjct: 257 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT 316
Query: 885 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 944
           GH    +G+   D  NILVS   D+ + +WD     I+T + LQT  G      + T +Q
Sbjct: 317 GHQSLTSGMELKD--NILVSGNADSTVKIWD-----IKTGQCLQTLQGPNKHQSAVTCLQ 369
Query: 945 FHKD 948
           F+K+
Sbjct: 370 FNKN 373

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 23/205 (11%)
Query: 436 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 495
           L++  H G V  L ++     +S  T   D+T++VWD   G  T+ FEGH + V  L   
Sbjct: 156 LQLSGHDGGVWALKYAHGGILVSGST---DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 496 AKENIHFIFSISVDGKIKAWLYDS------LGARVDY--------DAPGLGCTRMAYSAN 541
             +NI +I + S D  +  W           G   DY        + P        + A+
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 542 GRRLFSCG---TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 598
            R +   G    S   ++ L+ W+ ++        G     + +    +D  + + ++A 
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG---HTDRIYSTIYDHERKRCISAS 329
Query: 599 DDHVIKIWDMNKVQLLTTIDAGGGL 623
            D  I+IWD+   +L+ T+     L
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTAL 354

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 23/205 (11%)
Query: 436 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 495
           L++  H G V  L ++     +S  T   D+T++VWD   G  T+ FEGH + V  L   
Sbjct: 156 LQLSGHDGGVWALKYAHGGILVSGST---DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 496 AKENIHFIFSISVDGKIKAWLYDS------LGARVDY--------DAPGLGCTRMAYSAN 541
             +NI +I + S D  +  W           G   DY        + P        + A+
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 542 GRRLFSCG---TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 598
            R +   G    S   ++ L+ W+ ++        G     + +    +D  + + ++A 
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSG---HTDRIYSTIYDHERKRCISAS 329
Query: 599 DDHVIKIWDMNKVQLLTTIDAGGGL 623
            D  I+IWD+   +L  T+     L
Sbjct: 330 XDTTIRIWDLENGELXYTLQGHTAL 354

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 849 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 908
           S+ F+P D   +A G +D  I I++  + +++  L+GH + +  L +  + + LVS  GD
Sbjct: 128 SVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 909 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 939
             + +WD+     Q   +L   DGV T+A S
Sbjct: 187 RTVRIWDLRTG--QCSLTLSIEDGVTTVAVS 215

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 90/218 (41%), Gaps = 29/218 (13%)
Query: 400 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 459
           V  VV S DG           ++L+    G   R+ +    H  +V  +AFS   +QI  
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQI-- 487
Query: 460 ITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAW- 515
           ++   D+TIK+W+ +   + T S  G G   +  C     N     I S S D  +K W 
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 516 -----LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 570
                L  +L     Y       + +A S +G    S G  K+G   L  W+ +EG  K+
Sbjct: 548 LSNCKLRSTLAGHTGY------VSTVAVSPDGSLCASGG--KDGVVLL--WDLAEG--KK 595
Query: 571 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 608
            Y    L+ NSV      +     L A  +H IKIWD+
Sbjct: 596 LYS---LEANSVIHALCFSPNRYWLCAATEHGIKIWDL 630

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 769 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVIS 827
           L ++  ++     RL+   +G Q     + D+   +A    A S +  YL + +  G ++
Sbjct: 92  LPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAW-TLAFSPDSQYLATGTHVGKVN 147
Query: 828 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS 887
           ++ V + K   ++        S+A++P D   +A G  D  I I++  + +++  LEGH+
Sbjct: 148 IFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206
Query: 888 KRVTGLVFSDALNILVSSGGDAQIFVWDV 916
             +  L FS    +LV++  D  I ++DV
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDV 235

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 808 CFALSKNDA-YLFSASGGVISLYIVMT------FKTILTIMPPSPTATSLAFNPHDNNVI 860
           C+ L+ N A  L ++ GG   + I  T       K++L+      T   +A++P  N + 
Sbjct: 19  CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLA 77
Query: 861 AIGMDDST-ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 917
           +   D +T I   N    E ++ LEGH   V  + ++ + N+L +   D  ++VW+VD
Sbjct: 78  SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1093
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.98
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.82
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.76
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.73
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.72
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.7
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.7
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.69
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.69
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.68
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.68
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.66
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.64
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.6
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.6
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.6
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.59
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.58
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.57
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.57
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.57
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.56
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.55
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.55
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.55
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.54
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.54
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.52
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.5
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.49
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.49
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.49
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.48
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.47
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.46
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.42
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.38
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.38
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.35
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.33
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.32
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.32
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.31
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.3
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.29
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.29
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.29
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.29
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.26
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.25
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.24
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.24
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.22
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.21
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.18
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.18
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.18
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.17
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.17
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.16
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.16
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.15
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.13
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.13
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.11
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.09
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.06
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.04
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	99.02
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	99.02
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.99
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.97
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.92
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.91
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.85
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.85
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.83
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.83
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.79
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.79
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.78
3ott_A	758	Two-component system sensor histidine kinase; beta	98.74
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.73
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.69
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.65
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.65
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.63
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.63
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.59
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.56
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.55
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.53
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.5
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.46
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.44
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.44
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.43
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.42
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.4
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.39
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.36
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.36
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.33
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.33
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.33
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.31
3ott_A	758	Two-component system sensor histidine kinase; beta	98.31
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.28
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.26
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.26
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.22
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.21
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.17
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.16
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.16
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.16
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.01
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.96
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.96
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.9
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.89
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.87
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.84
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.8
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.77
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.77
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.75
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.73
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.61
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.59
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.57
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.57
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.53
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.53
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.35
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.3
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.28
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.27
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.15
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.12
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.09
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.99
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.97
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.95
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.87
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.83
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.79
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.78
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.74
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	96.72
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.68
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.63
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.6
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.48
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.32
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.32
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.31
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.31
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.15
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.03
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.03
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.94
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.81
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.66
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.63
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.46
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.9
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.8
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.75
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.67
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.62
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	94.55
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.4
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.89
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.63
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.34
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.31
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	91.38
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	90.79
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.43
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	89.59
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	89.38
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	89.34
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	88.74
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	86.53
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	85.11
2j4b_A	138	TAF5, transcription initiation factor TFIID subuni	84.78

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.3e-68  Score=645.37  Aligned_cols=566  Identities=22%  Similarity=0.339  Sum_probs=488.3

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      +.|+||++.|+|++|||||++ ||+|+.|++|+|||. +++++..                   +.+|...|.+++|+||
T Consensus        10 ~~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fspd   68 (577)
T 2ymu_A           10 NRLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSPD   68 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECTT
T ss_pred             eEECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECCC
Confidence            358899999999999999995 899999999999995 6776654                   7789999999999999


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  488 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  488 (1093)
                      |++||+++.|++|+|||.. ++.+   ..+.+|...|.+++|+||++  ++++++.|+.+++|+.. ........+|...
T Consensus        69 g~~las~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~  141 (577)
T 2ymu_A           69 GQTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSS  141 (577)
T ss_dssp             SSEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSC
T ss_pred             CCEEEEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCc
Confidence            9999999999999999965 4433   37889999999999999999  89999999999999954 4556677789999


Q ss_pred             eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001352          489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  568 (1093)
Q Consensus       489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~  568 (1093)
                      +..+.+.+  ++..+++++.++.+++|+... ........+...+.++.++|+++++++++.    ++.|++||. +++.
T Consensus       142 v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~  213 (577)
T 2ymu_A          142 VWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQL  213 (577)
T ss_dssp             EEEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCE
T ss_pred             eeeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcE
Confidence            99998854  667899999999999998543 445566678889999999999999999986    677999995 5777


Q ss_pred             eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352          569 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  648 (1093)
Q Consensus       569 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  648 (1093)
                      +..+.+|.   ..|.+++|+|+++++++++.|+.|++||. +++.+..+..+  ...|.+++|+|+++.+++++.|+.++
T Consensus       214 ~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i~  287 (577)
T 2ymu_A          214 LQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTVK  287 (577)
T ss_dssp             EEEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEEEecCC---CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence            88888877   89999999999999999999999999996 46677777655  45689999999999999999999999


Q ss_pred             EEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccc
Q 001352          649 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL  728 (1093)
Q Consensus       649 iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~  728 (1093)
                      +|+.. ++....+.+|...+.+++++                      |+++.+++++.|+.+++|+......   .  .
T Consensus       288 ~w~~~-~~~~~~~~~h~~~v~~~~~~----------------------~~~~~l~t~~~d~~i~~w~~~~~~~---~--~  339 (577)
T 2ymu_A          288 LWNRN-GQLLQTLTGHSSSVWGVAFS----------------------PDGQTIASASDDKTVKLWNRNGQHL---Q--T  339 (577)
T ss_dssp             EEETT-SCEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTSCEE---E--E
T ss_pred             EEeCC-CcEEEEEecCCCCeEEEEEC----------------------CCCCEEEEEeCCCeEEEEeCCCCee---E--E
Confidence            99965 56777888999999988886                      7888999999999999999653211   1  1


Q ss_pred             cCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeE
Q 001352          729 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC  808 (1093)
Q Consensus       729 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  808 (1093)
                      +  .+|...+.+++|+|+++.+++++.+|.+++|+...                       ..+....    +|...|.+
T Consensus       340 ~--~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~~~~----~~~~~v~~  390 (577)
T 2ymu_A          340 L--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-----------------------QLLQTLT----GHSSSVRG  390 (577)
T ss_dssp             E--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-----------------------CEEEEEE----CCSSCEEE
T ss_pred             E--eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----------------------CEEEEec----CCCCCeEE
Confidence            1  34778999999999999999999999999998432                       1122221    38889999


Q ss_pred             EEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeeccccc
Q 001352          809 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS  887 (1093)
Q Consensus       809 l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~  887 (1093)
                      ++|+|||++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|.
T Consensus       391 ~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~  467 (577)
T 2ymu_A          391 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHS  467 (577)
T ss_dssp             EEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCS
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCC
Confidence            99999999999998 699999995 5788889999999999999999 8999999999999999996 578888999999


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcC
Q 001352          888 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAE  966 (1093)
Q Consensus       888 ~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~  966 (1093)
                      ..|++++|+||+++|++++.|+.|++||... +     .++...+|..   .|++++|+|||++||+ +.|+.|++||. 
T Consensus       468 ~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~~---~v~~l~~s~dg~~l~s~~~dg~v~lwd~-  537 (577)
T 2ymu_A          468 SSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR-  537 (577)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCSS---CEEEEEECTTSSCEEEEETTSEEEEECT-
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCCC---CEEEEEEcCCCCEEEEEECcCEEEEEeC-
Confidence            9999999999999999999999999999754 2     3344455554   7999999999999998 57899999996 


Q ss_pred             CcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001352          967 ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1007 (1093)
Q Consensus       967 ~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd 1007 (1093)
                      +++++.. +.+|...|++++|+|||++|+|++.|++|++||
T Consensus       538 ~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          538 NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            5777776 568999999999999999999999999999997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.5e-66  Score=627.36  Aligned_cols=564  Identities=21%  Similarity=0.313  Sum_probs=482.9

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      |.||++.|++++|||||++||+|+.|++|+|||. +++.++   .+.+|.+.|++++|+||++  +|++++.|++|+|||
T Consensus        12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~---~l~gh~~~V~~l~fspdg~--~las~~~d~~i~vWd   85 (577)
T 2ymu_A           12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ---TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWN   85 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEE---EEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEE
T ss_pred             ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEE---EEeCCCCCEEEEEECCCCC--EEEEEeCCCEEEEEE
Confidence            8899999999999999999999999999999996 455443   7889999999999999999  899999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                       .+++++..+.+|...|.+++|+|  ++.+|++++.|+.+++|+... ........+...+..+.++|++..++.++.  
T Consensus        86 -~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--  159 (577)
T 2ymu_A           86 -RNGQLLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD--  159 (577)
T ss_dssp             -TTSCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTC-CEEEEECCCSSCEEEEEECTTSSCEEEEET--
T ss_pred             -CCCCEEEEEECCCCCEEEEEECC--CCCEEEEEcCCCceeeccccc-ceeeeccCCCCceeeeeeecCCccceeccc--
Confidence             57889999999999999999965  678999999999999999754 445566778889999999999999998875  


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  632 (1093)
                        +..+.+|+... ........+.   ..+.++.++|+++++++++.||.|++||. +++.+..+..+.  ..|.+++|+
T Consensus       160 --~~~~~~~~~~~-~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~--~~v~~~~~s  230 (577)
T 2ymu_A          160 --DKTVKLWNRNG-QLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVRGVAFS  230 (577)
T ss_dssp             --TSEEEEECTTS-CEEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS--SCEEEEEEC
T ss_pred             --ccceeccccce-eeeeeccCCC---cceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCC--CCEEEEEEC
Confidence              56688898654 4445555555   88999999999999999999999999996 567777777653  468999999


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccce
Q 001352          633 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  712 (1093)
Q Consensus       633 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  712 (1093)
                      |++++|++++.|+.|++|+.. ++.+..+.+|...+.+++|+                      |+++.+++++.|+.++
T Consensus       231 ~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~----------------------~d~~~l~~~~~d~~i~  287 (577)
T 2ymu_A          231 PDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFR----------------------PDGQTIASASDDKTVK  287 (577)
T ss_dssp             TTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEE
T ss_pred             CCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEc----------------------CCCCEEEEEeCCCEEE
Confidence            999999999999999999964 56778888899999988886                      7888899999999999


Q ss_pred             ecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCce
Q 001352          713 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF  792 (1093)
Q Consensus       713 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (1093)
                      +|+....    ..   ....+|...|.+++|+|+++.+++++.||.+++|+.....                       +
T Consensus       288 ~w~~~~~----~~---~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-----------------------~  337 (577)
T 2ymu_A          288 LWNRNGQ----LL---QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-----------------------L  337 (577)
T ss_dssp             EEETTSC----EE---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----------------------E
T ss_pred             EEeCCCc----EE---EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----------------------e
Confidence            9995421    11   1113488899999999999999999999999999854321                       2


Q ss_pred             eeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001352          793 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI  871 (1093)
Q Consensus       793 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~i  871 (1093)
                      ...  .  +|...+.+++|+|+++++++++ ++.+++||. +++.+..+..|...|++++|+| ++++|++++.|+.|++
T Consensus       338 ~~~--~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~  411 (577)
T 2ymu_A          338 QTL--T--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKL  411 (577)
T ss_dssp             EEE--C--CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEE
T ss_pred             EEE--e--CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEE
Confidence            221  1  3888999999999999999998 699999995 5788889999999999999999 9999999999999999


Q ss_pred             EEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCE
Q 001352          872 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  951 (1093)
Q Consensus       872 wd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~  951 (1093)
                      ||. +++.+..+.+|...|++++|+||+++|++++.|+.|++||....      .+....+|..   .|.+++|+||+++
T Consensus       412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~~---~v~~~~~spd~~~  481 (577)
T 2ymu_A          412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHSS---SVRGVAFSPDGQT  481 (577)
T ss_dssp             ECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCSS---CEEEEEECTTSCE
T ss_pred             EeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCCC---CEEEEEEcCCCCE
Confidence            995 57888899999999999999999999999999999999998652      2333344443   7999999999999


Q ss_pred             EEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCC
Q 001352          952 FLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCL 1030 (1093)
Q Consensus       952 l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1093)
                      |++ +.|+.|++||. +++++.. +.+|...|++++|||||++|++++.||.|++||. +++.+..+.        .|..
T Consensus       482 las~~~d~~i~iw~~-~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--------~h~~  550 (577)
T 2ymu_A          482 IASASDDKTVKLWNR-NGQLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--------GHSS  550 (577)
T ss_dssp             EEEEETTSEEEEEET-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--------CCSS
T ss_pred             EEEEeCCCEEEEEcC-CCCEEEE-EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--------CCCC
Confidence            999 57899999995 5777766 5689999999999999999999999999999996 567766665        2455


Q ss_pred             ccceeEEEeCCCCCCEEEEEeCCCcEEEEe
Q 001352         1031 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1060 (1093)
Q Consensus      1031 ~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1060 (1093)
                      .|.  +++|+| |+++|++++.||+|++||
T Consensus       551 ~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          551 SVW--GVAFSP-DGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             CEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence            565  678999 689999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.3e-66  Score=627.81  Aligned_cols=576  Identities=15%  Similarity=0.185  Sum_probs=476.0

Q ss_pred             CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352          334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  413 (1093)
Q Consensus       334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la  413 (1093)
                      +++.+.+++|||||++ ||+++ ++.|+|||+.+++....                   +.+|...|++++|||||++||
T Consensus        17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~la   75 (611)
T 1nr0_A           17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA   75 (611)
T ss_dssp             CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred             ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEEE
Confidence            5678899999999995 77776 57999999998877654                   778999999999999999999


Q ss_pred             EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC----CcEEEEECCCCceeEEeecCCCCe
Q 001352          414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGAPV  489 (1093)
Q Consensus       414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~~h~~~v  489 (1093)
                      +|+.|++|+|||+.+++... ...+.+|.++|.+++|+||++  .|++++.+    +.|++||  +++.+..+.+|...|
T Consensus        76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v  150 (611)
T 1nr0_A           76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM  150 (611)
T ss_dssp             EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred             EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence            99999999999998665432 236778999999999999999  67777754    3566676  677888899999999


Q ss_pred             EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeee
Q 001352          490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  569 (1093)
Q Consensus       490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~  569 (1093)
                      ++++|+|.. ...|++++.|++|++||..+.+....+..|...|.+++|+|||++|++++.    ++.|++||..+++.+
T Consensus       151 ~~v~f~p~~-~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~  225 (611)
T 1nr0_A          151 NSVDFKPSR-PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKT  225 (611)
T ss_dssp             EEEEECSSS-SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEE
T ss_pred             eEEEECCCC-CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEe
Confidence            999997642 136999999999999999888888889999999999999999999999986    667999999999988


Q ss_pred             eeee-------cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCC-CCCceEEEecCCCEEEEE
Q 001352          570 RTYQ-------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLAVI  641 (1093)
Q Consensus       570 ~~~~-------~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~  641 (1093)
                      ..+.       +|.   ..|.+++|+|++++|++++.|++|++||+.+++.+..+..+... ..+..+.|  ++..++++
T Consensus       226 ~~~~~~~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~  300 (611)
T 1nr0_A          226 GVFEDDSLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSI  300 (611)
T ss_dssp             EECBCTTSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEE
T ss_pred             eeeccccccccccC---CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEE
Confidence            8774       455   89999999999999999999999999999999998888654221 12234444  78899999


Q ss_pred             ECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccC
Q 001352          642 ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP  721 (1093)
Q Consensus       642 ~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~  721 (1093)
                      +.|+.+++|+...+.....+.+|...|.+++|+                      |+++++++++.|++|++||+..+..
T Consensus       301 s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s----------------------pdg~~l~s~s~D~~v~~Wd~~~~~~  358 (611)
T 1nr0_A          301 SANGFINFVNPELGSIDQVRYGHNKAITALSSS----------------------ADGKTLFSADAEGHINSWDISTGIS  358 (611)
T ss_dssp             ETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             eCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe----------------------CCCCEEEEEeCCCcEEEEECCCCce
Confidence            999999999999888888889999999999986                      7899999999999999999864332


Q ss_pred             ccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCC
Q 001352          722 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN  801 (1093)
Q Consensus       722 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  801 (1093)
                      ..     .....|...|.+++|++++ .+++++.|+.+++|+........                 .. .....     
T Consensus       359 ~~-----~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~-----------------~~-~~~~~-----  409 (611)
T 1nr0_A          359 NR-----VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDS-----------------SK-AVANK-----  409 (611)
T ss_dssp             EE-----CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCT-----------------TS-CCEEE-----
T ss_pred             ee-----ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccc-----------------cc-eeeee-----
Confidence            11     1123588899999999877 58899999999999876432100                 00 00001     


Q ss_pred             CCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce--
Q 001352          802 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--  879 (1093)
Q Consensus       802 ~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~--  879 (1093)
                      ......+++|+|+|+.++++.++.+++|+  .++ +..+. |...+.+++|+| |+++||+|+.|++|++||+.+++.  
T Consensus       410 ~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~  484 (611)
T 1nr0_A          410 LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSE  484 (611)
T ss_dssp             CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEE
T ss_pred             cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceee
Confidence            23346789999999999888889999998  344 55554 778899999999 999999999999999999987653  


Q ss_pred             eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-CceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeC
Q 001352          880 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE  957 (1093)
Q Consensus       880 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d  957 (1093)
                      +.. .+|...|++++|||||++|++++.|++|++|++.+ ++...   .....+|..   .|.+++|||||++||+ +.|
T Consensus       485 ~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~~---~V~~v~fspdg~~lasgs~D  557 (611)
T 1nr0_A          485 VKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHTA---KVACVSWSPDNVRLATGSLD  557 (611)
T ss_dssp             EEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCSS---CEEEEEECTTSSEEEEEETT
T ss_pred             eec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeeccc---ceeEEEECCCCCEEEEEECC
Confidence            234 67999999999999999999999999999999986 33211   001223443   7999999999999999 689


Q ss_pred             CeEEEEEcCCcceee-eeecCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001352          958 THLAIYEAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus       958 ~~i~vwd~~~~~~~~-~~~~~h-~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
                      ++|++||+.++.... ....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus       558 ~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          558 NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             SCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             CcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence            999999999876433 446789 89999999999998 9999999999999984

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.8e-63  Score=600.26  Aligned_cols=572  Identities=11%  Similarity=0.108  Sum_probs=455.5

Q ss_pred             CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC
Q 001352          395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  474 (1093)
Q Consensus       395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  474 (1093)
                      .+.+.+.+++|+|||++||+++ +++|++|++.+++...   .+.+|...|++++|+|||+  +|++|+.|++|+|||+.
T Consensus        16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~--~lasg~~d~~v~lWd~~   89 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDTT   89 (611)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEESS
T ss_pred             cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe---EecCCCCceEEEEECCCCc--EEEEEeCCCCEEEeECC
Confidence            4678899999999999999997 5699999998876554   6889999999999999999  89999999999999997


Q ss_pred             CCc--eeEEeecCCCCeEEeeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCC-EEEE
Q 001352          475 TGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFS  547 (1093)
Q Consensus       475 ~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~  547 (1093)
                      +++  ....+.+|.++|.+++|+|  ++++|++++.+    +.|++||  .+.....+.+|...|.+++|+|++. .|++
T Consensus        90 ~~~~~~~~~~~~~~~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s  165 (611)
T 1nr0_A           90 QTTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIIS  165 (611)
T ss_dssp             STTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred             CCcceeeEeecccCCceEEEEECC--CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEE
Confidence            654  4567889999999999965  66789888865    3677776  4556667788999999999999987 5888


Q ss_pred             EecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-----CC
Q 001352          548 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GG  622 (1093)
Q Consensus       548 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~  622 (1093)
                      ++.    ++.|++||..+++....+.+|.   ..|.+++|+|++++|++++.|++|++||..+++.+..+...     .+
T Consensus       166 ~s~----D~~v~lwd~~~~~~~~~l~~H~---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h  238 (611)
T 1nr0_A          166 GSD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH  238 (611)
T ss_dssp             EET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred             EeC----CCeEEEEECCCCeEeeeecccc---CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccccccc
Confidence            876    6679999999999999999888   89999999999999999999999999999999988877421     34


Q ss_pred             CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccc---cceeeeecCCCceeeeeccCCceEecCCCCCCC
Q 001352          623 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD---NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV  699 (1093)
Q Consensus       623 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~  699 (1093)
                      ...|.+++|+|+|++|++++.|++|++||+.+++.+..+..+..   ....+.                        .++
T Consensus       239 ~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~  294 (611)
T 1nr0_A          239 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII------------------------WTK  294 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE------------------------ECS
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE------------------------EcC
Confidence            55799999999999999999999999999998877766543211   111111                        246


Q ss_pred             ccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCccccccc
Q 001352          700 KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKV  779 (1093)
Q Consensus       700 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~  779 (1093)
                      +.+++++.|+.+++|+.......      ....+|...|.+++|+|+|++|++++.|+.+++|++...            
T Consensus       295 ~~l~s~s~d~~i~~~~~~~~~~~------~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~------------  356 (611)
T 1nr0_A          295 QALVSISANGFINFVNPELGSID------QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG------------  356 (611)
T ss_dssp             SCEEEEETTCCEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------------
T ss_pred             CEEEEEeCCCcEEEEeCCCCCcc------eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC------------
Confidence            78999999999999996543211      112358899999999999999999999999999986543            


Q ss_pred             CCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEE---ECCCCCCeEEEEEcCCC
Q 001352          780 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT---IMPPSPTATSLAFNPHD  856 (1093)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d  856 (1093)
                                .+....   ..+|...|.+++|++++.++..+.|+.+++|+..++.....   .........+++|+| +
T Consensus       357 ----------~~~~~~---~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d  422 (611)
T 1nr0_A          357 ----------ISNRVF---PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-D  422 (611)
T ss_dssp             ----------CEEECS---SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-T
T ss_pred             ----------ceeeec---ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-C
Confidence                      211111   12488999999999887655555589999999876543210   001234567899999 8


Q ss_pred             CCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccC
Q 001352          857 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  936 (1093)
Q Consensus       857 ~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  936 (1093)
                      +++++++ .++.+++|+  .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++....   ... .+|.  
T Consensus       423 g~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~--  491 (611)
T 1nr0_A          423 GDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP--  491 (611)
T ss_dssp             SSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS--
T ss_pred             CcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC--
Confidence            8777766 467899998  344 55554 88899999999999999999999999999998754321   122 2333  


Q ss_pred             CCCceEEEEccCCCEEEE-EeCCeEEEEEcCC-cceeee-eecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 001352          937 APSETHIQFHKDQTRFLL-VHETHLAIYEAEE-LTCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1013 (1093)
Q Consensus       937 ~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~-~~~~~~-~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~ 1013 (1093)
                       ..|.+++|||||++|++ +.|++|++|++.+ ++.... ...+|...|.+++|||||++|++++.|++|++|++.++..
T Consensus       492 -~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~  570 (611)
T 1nr0_A          492 -AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  570 (611)
T ss_dssp             -SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             -CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence             37999999999999999 5789999999988 655544 3445999999999999999999999999999999998753


Q ss_pred             EE-EeccccccCCCCC-CCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352         1014 QC-RILSTAYLRPTTS-CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus      1014 ~~-~~~~~~~~~~~~~-~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
                      .. ...       ..| ...|.  +++|+| |+. |++++.||+|++|+++
T Consensus       571 ~~~~~~-------~~h~~~~v~--~v~fs~-d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          571 HPIIIK-------GAHAMSSVN--SVIWLN-ETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             CCEEET-------TSSTTSCEE--EEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred             ccchhh-------ccCcccCee--EEEEcC-CCE-EEEecCCCCEEEEecc
Confidence            21 111       113 34455  678888 456 9999999999999983

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.8e-64  Score=661.43  Aligned_cols=617  Identities=14%  Similarity=0.184  Sum_probs=511.5

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      ..+.+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+..                   +.+|...|.+++|+||
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~  668 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSD  668 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTT
T ss_pred             EEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecC
Confidence            35779999999999999999 589999999999999999988765                   6789999999999999


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  488 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  488 (1093)
                      |++||+++.|++|++||+.+++.+.   .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|...
T Consensus       669 ~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~  745 (1249)
T 3sfz_A          669 DSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS  745 (1249)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSC
T ss_pred             CCEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCC
Confidence            9999999999999999999987655   6789999999999999765558999999999999999999999999999999


Q ss_pred             eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------------CCceEEEEEccCCCEEEEEecCCCCc
Q 001352          489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------------GLGCTRMAYSANGRRLFSCGTSKEGE  555 (1093)
Q Consensus       489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------------~~~v~~~~~s~d~~~l~~~~~~~~~~  555 (1093)
                      |.+++|++  ++.++++++.||.|++||+.+......+...             ...+.+++|+|+|+.+++++     +
T Consensus       746 v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~  818 (1249)
T 3sfz_A          746 VNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----K  818 (1249)
T ss_dssp             EEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----T
T ss_pred             EEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----C
Confidence            99999965  6679999999999999999887765544321             23678899999999999987     4


Q ss_pred             eeEEEEeCCCCeeeeeee-cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC
Q 001352          556 SFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  634 (1093)
Q Consensus       556 ~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  634 (1093)
                      +.+.+||..++.....+. +|.   ..+.+++|+|+++++++++.||.|++||+.++..+..+..+  ...|.+++|+|+
T Consensus       819 ~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spd  893 (1249)
T 3sfz_A          819 NKVLLFDIHTSGLLAEIHTGHH---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFSPD  893 (1249)
T ss_dssp             TEEEEEETTTCCEEEEEECSSS---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEECTT
T ss_pred             CcEEEEEecCCCceeEEcCCCC---CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC--ccceEEEEECCC
Confidence            569999999998887776 444   89999999999999999999999999999999999888765  456999999999


Q ss_pred             CCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceec
Q 001352          635 GTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVE  714 (1093)
Q Consensus       635 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w  714 (1093)
                      |+++++++.||.+++|+..+.........  .......+                      .+++..++.....+.+.++
T Consensus       894 g~~l~s~s~dg~v~vw~~~~~~~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~  949 (1249)
T 3sfz_A          894 GSSFLTASDDQTIRVWETKKVCKNSAIVL--KQEIDVVF----------------------QENETMVLAVDNIRGLQLI  949 (1249)
T ss_dssp             SSEEEEEETTSCEEEEEHHHHHSCCSSSE--EEEEEEEE----------------------ETTEEEEEEEESSSSEEEE
T ss_pred             CCEEEEEeCCCeEEEEEccccceeeeecc--cceeeEEE----------------------cCCCcEEEEecCCcceEEE
Confidence            99999999999999999764322111110  00111111                      1333444445555555555


Q ss_pred             ceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceee
Q 001352          715 KPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV  794 (1093)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (1093)
                      .......   .      ......+.+++|+|+++.+++++.+|.+.+|++....                      ....
T Consensus       950 ~~~~~~~---~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~----------------------~~~~  998 (1249)
T 3sfz_A          950 AGKTGQI---D------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR----------------------VFSS  998 (1249)
T ss_dssp             EESSCCE---E------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS----------------------CEEE
T ss_pred             ecCcceE---E------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc----------------------eeee
Confidence            5332111   0      1134679999999999999999999999999865432                      1222


Q ss_pred             ccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001352          795 NDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN  873 (1093)
Q Consensus       795 ~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd  873 (1093)
                      .  .  +|...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...+.+++|+| ++ .+++++.||.|++||
T Consensus       999 ~--~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A          999 G--V--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp             C--C--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEEEE
T ss_pred             c--c--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEEEE
Confidence            1  1  4889999999999999999998 7999999999988764 557899999999999 65 567899999999999


Q ss_pred             cCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEE
Q 001352          874 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL  953 (1093)
Q Consensus       874 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  953 (1093)
                      +.+++.+..+.+|.+.|++++|+||+++|++++.|++|++||+.+++     .+....+|..   .|.+++|+|||++|+
T Consensus      1072 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~~la 1143 (1249)
T 3sfz_A         1072 VITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGILLA 1143 (1249)
T ss_dssp             TTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSSEEE
T ss_pred             CCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eeeeeccCCC---cEEEEEECCCCCEEE
Confidence            99999999999999999999999999999999999999999998865     3445556554   799999999999999


Q ss_pred             E-EeCCeEEEEEcCCcceeeee--------ecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccC
Q 001352          954 L-VHETHLAIYEAEELTCLKQW--------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLR 1024 (1093)
Q Consensus       954 ~-~~d~~i~vwd~~~~~~~~~~--------~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 1024 (1093)
                      + +.||.|++||+.+++.+..+        ..+|.+.|++++|||||++|++++  |.|++||+.+++.+..+..     
T Consensus      1144 t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~----- 1216 (1249)
T 3sfz_A         1144 TGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT----- 1216 (1249)
T ss_dssp             EEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCC-----
T ss_pred             EEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeec-----
Confidence            9 57899999999999887654        256889999999999999999885  8999999999988755541     


Q ss_pred             CCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352         1025 PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus      1025 ~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
                         |...|.  +++|+| |+.+|++++.||.|++|++.+
T Consensus      1217 ---~~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A         1217 ---NGTNLK--KIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp             ---SSCCCC--CCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred             ---cCCccc--EEEECC-CCCEEEEecCCcEEEEEeecC
Confidence               233344  577888 589999999999999999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.8e-60  Score=579.71  Aligned_cols=558  Identities=11%  Similarity=0.160  Sum_probs=483.6

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCC----ceeEEeeeeeeecccccceeeeeeecCCCCC-eEEEEECC
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWSP  407 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~s~  407 (1093)
                      .|.+.|.+++|||||++ ||+++ ++.|+|||+.++    +....                   +.+|... |.+++|+|
T Consensus        16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~sp   74 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFSP   74 (615)
T ss_dssp             CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEECS
T ss_pred             CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEECc
Confidence            58889999999999995 77776 789999999988    66554                   7789999 99999999


Q ss_pred             --CCCEEEEEEcCCEEEEEEccCCC-----cccceEEeccccccEEEEEeeCCCCcEEEEEEcCC----CcEEEEECCCC
Q 001352          408 --DGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTG  476 (1093)
Q Consensus       408 --dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~  476 (1093)
                        |+++||+++.||.|++||+.+++     .......+.+|...|.+++|+|+++  ++++++.+    +.|++||  ++
T Consensus        75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~  150 (615)
T 1pgu_A           75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SG  150 (615)
T ss_dssp             STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TC
T ss_pred             CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CC
Confidence              99999999999999999997651     1123336778999999999999999  78888877    6788887  77


Q ss_pred             ceeEEeecCCCCeEEeeecccCCcc-EEEEEecCCeEEEEEcCCCCceEEecCCCC---ceEEEEEccC-CCEEEEEecC
Q 001352          477 SRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGTS  551 (1093)
Q Consensus       477 ~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~s~d-~~~l~~~~~~  551 (1093)
                      +.+..+.+|...|.+++|++  ++. .+++++.||.|++||+.+.+....+..+..   .|.+++|+|+ ++++++++. 
T Consensus       151 ~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-  227 (615)
T 1pgu_A          151 NSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-  227 (615)
T ss_dssp             CEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET-
T ss_pred             CcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC-
Confidence            88999999999999999965  444 899999999999999999888888988888   9999999999 999999986 


Q ss_pred             CCCceeEEEEeCCCCeeeeee-e---cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC--CCC
Q 001352          552 KEGESFLVEWNESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPE  625 (1093)
Q Consensus       552 ~~~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~  625 (1093)
                         ++.|++||+.+++.+..+ .   .|.   ..|.+++|+ +++++++++.||.|++||+.+++.+..+..+..  ...
T Consensus       228 ---dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  300 (615)
T 1pgu_A          228 ---DRKISCFDGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQ  300 (615)
T ss_dssp             ---TCCEEEEETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGC
T ss_pred             ---CCeEEEEECCCCCEeEEecccccccC---CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCc
Confidence               667999999999999888 5   555   899999999 999999999999999999999999988876521  124


Q ss_pred             CceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceee
Q 001352          626 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV  705 (1093)
Q Consensus       626 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~  705 (1093)
                      +.++.|+ ++.++++++.+|.|++|++.+++.+..+.+|...+.++++ |.                         ++++
T Consensus       301 ~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-------------------------l~~~  353 (615)
T 1pgu_A          301 QVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-------------------------LISG  353 (615)
T ss_dssp             EEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-------------------------TEEE
T ss_pred             eeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-------------------------cEEE
Confidence            5667775 8999999999999999999998889999999999988887 52                         7889


Q ss_pred             cccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccC
Q 001352          706 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ  785 (1093)
Q Consensus       706 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~  785 (1093)
                      +.|+.+++|++.        .+.   ..|...|.+++| +++..+++++.|+.+++|++....                 
T Consensus       354 ~~dg~i~~w~~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~-----------------  404 (615)
T 1pgu_A          354 SYDGRIMEWSSS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHE-----------------  404 (615)
T ss_dssp             ETTSCEEETTTT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEE-----------------
T ss_pred             CCCCeEEEEEch--------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCc-----------------
Confidence            999999999976        111   358889999999 667789999999999999875432                 


Q ss_pred             CCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeC
Q 001352          786 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD  865 (1093)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~  865 (1093)
                                      ....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.+++|+   +++|++++.
T Consensus       405 ----------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~  464 (615)
T 1pgu_A          405 ----------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLE  464 (615)
T ss_dssp             ----------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEET
T ss_pred             ----------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeec
Confidence                            1125778999999999999888999999999999988887 88899999998   679999999


Q ss_pred             -CCeEEEEEcCCccee-eecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCC-cccCCCCceE
Q 001352          866 -DSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSETH  942 (1093)
Q Consensus       866 -dg~i~iwd~~~~~~~-~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~  942 (1093)
                       ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++.     +....+ |..   .|++
T Consensus       465 ~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~h~~---~v~~  536 (615)
T 1pgu_A          465 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----KTSRWAFRTS---KINA  536 (615)
T ss_dssp             TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EECCSCCCSS---CEEE
T ss_pred             CCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-----eeEeecCCCC---ceeE
Confidence             999999999988766 77888999999999999999999999999999999998653     334444 443   7999


Q ss_pred             EEEcc----------CCCEEEE-EeCCeEEEEEcCCc-ceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001352          943 IQFHK----------DQTRFLL-VHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus       943 ~~~s~----------dg~~l~~-~~d~~i~vwd~~~~-~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
                      ++|+|          ++++|++ +.|+.|++||+.++ +++.. ..+|...|.+++|+|||+ |++++.||+|++|++.+
T Consensus       537 ~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          537 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             EEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh-hhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            99999          9999999 57899999999998 45554 678999999999999999 99999999999999975


Q ss_pred             C
Q 001352         1011 L 1011 (1093)
Q Consensus      1011 ~ 1011 (1093)
                      +
T Consensus       615 ~  615 (615)
T 1pgu_A          615 E  615 (615)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.8e-58  Score=605.26  Aligned_cols=587  Identities=16%  Similarity=0.188  Sum_probs=497.1

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +.+|.+.|.+++|||||++||+|+.||+|++||+.+++.+.   .+.+|...|.+++|+|+++  ++++++.|++|++||
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vwd  685 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIWD  685 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEEE
Confidence            77899999999999999999999999999999999987555   6789999999999999999  899999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      +.+++.+..+.+|...|.+++|++..++.++++++.||.|++||+.++.....+..|...|.+++|+|+++++++++.  
T Consensus       686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~--  763 (1249)
T 3sfz_A          686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA--  763 (1249)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES--
T ss_pred             CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC--
Confidence            999999999999999999999988778889999999999999999999999999999999999999999999999986  


Q ss_pred             CCceeEEEEeCCCCeeeeeeeccc----------ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG  622 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  622 (1093)
                        ++.|++||+.+++....+....          .....+.+++|+|++..+++++ ++.+.+||..++.....+... +
T Consensus       764 --dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~-~  839 (1249)
T 3sfz_A          764 --DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG-H  839 (1249)
T ss_dssp             --SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS-S
T ss_pred             --CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC-C
Confidence              6779999999998776664321          1123688899999999999887 689999999999988877632 2


Q ss_pred             CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccc
Q 001352          623 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  702 (1093)
Q Consensus       623 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  702 (1093)
                      ...+.+++|+|+++++++++.+|.|++|+..++..+..+.+|...|.+++|+                      |+++.+
T Consensus       840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------------------pdg~~l  897 (1249)
T 3sfz_A          840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS----------------------PDGSSF  897 (1249)
T ss_dssp             SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEE
T ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC----------------------CCCCEE
Confidence            3569999999999999999999999999999999999999999999999986                      788899


Q ss_pred             eeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCc
Q 001352          703 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  782 (1093)
Q Consensus       703 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  782 (1093)
                      ++++.|+.+++|+..........        .......+.+.+++..++.....+.+.++.....               
T Consensus       898 ~s~s~dg~v~vw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  954 (1249)
T 3sfz_A          898 LTASDDQTIRVWETKKVCKNSAI--------VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG---------------  954 (1249)
T ss_dssp             EEEETTSCEEEEEHHHHHSCCSS--------SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC---------------
T ss_pred             EEEeCCCeEEEEEccccceeeee--------cccceeeEEEcCCCcEEEEecCCcceEEEecCcc---------------
Confidence            99999999999997643322211        1223345667777777777777777776653321               


Q ss_pred             ccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEE
Q 001352          783 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA  861 (1093)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la  861 (1093)
                             .....       +...+.+++|+|+++++++++ +|.|++||+.+++....+.+|...|++++|+| ++++|+
T Consensus       955 -------~~~~~-------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~ 1019 (1249)
T 3sfz_A          955 -------QIDYL-------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLI 1019 (1249)
T ss_dssp             -------CEEEE-------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEE
T ss_pred             -------eEEEc-------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEE
Confidence                   11111       456799999999999999998 69999999999999999999999999999999 899999


Q ss_pred             EEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCce
Q 001352          862 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET  941 (1093)
Q Consensus       862 sg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  941 (1093)
                      +++.||.|++||+.+++... +.+|...|.+++|+|++ .+++++.|+.|++||+.+++..     ....+|..   .|.
T Consensus      1020 s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~~~~~~~---~v~ 1089 (1249)
T 3sfz_A         1020 SSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIE-----RDFTCHQG---TVL 1089 (1249)
T ss_dssp             EECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCC-----EEEECCSS---CCC
T ss_pred             EEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCcee-----EEEcccCC---cEE
Confidence            99999999999999988764 56799999999999975 6788999999999999987632     33344443   799


Q ss_pred             EEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccc
Q 001352          942 HIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1020 (1093)
Q Consensus       942 ~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~ 1020 (1093)
                      +++|+||++++++ +.|++|++||+.+++++.. ..+|...|++++|||||++|++++.||.|++||+.+++.+..+.+.
T Consensus      1090 ~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~ 1168 (1249)
T 3sfz_A         1090 SCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1168 (1249)
T ss_dssp             CEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCC
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCcceeee-eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccc
Confidence            9999999999999 5889999999999998876 5689999999999999999999999999999999999887665322


Q ss_pred             cccCC-CCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001352         1021 AYLRP-TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1066 (1093)
Q Consensus      1021 ~~~~~-~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~ 1066 (1093)
                      ..... ..|...|.  +++|+| |+.+|++++  |.|++||+.....
T Consensus      1169 ~~~~~~~~~~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A         1169 SVEEGTATHGGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp             C-------CCSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred             cccccccccCceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence            21111 12444455  678999 588898885  9999999976543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-57  Score=567.73  Aligned_cols=593  Identities=11%  Similarity=0.099  Sum_probs=447.9

Q ss_pred             ccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCE
Q 001352          332 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  411 (1093)
Q Consensus       332 ~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~  411 (1093)
                      .||.+.|++++|+|||+ +||+|+.||+|+|||..+++...                    ...|..+|.+++|+| |++
T Consensus        14 ~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp-g~~   71 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK-GIY   71 (902)
T ss_dssp             EECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-TTE
T ss_pred             cCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-CCE
Confidence            48999999999999998 69999999999999998776543                    224788999999999 889


Q ss_pred             EEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee-----------E
Q 001352          412 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-----------Y  480 (1093)
Q Consensus       412 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-----------~  480 (1093)
                      |++++.|++|++||+.+++.+.   .+. |...|++++|+|+++  ++++|+.||+|++||+.++++.           .
T Consensus        72 L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~  145 (902)
T 2oaj_A           72 LVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSF  145 (902)
T ss_dssp             EEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHT
T ss_pred             EEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccccccc
Confidence            9999999999999999987655   343 778999999999999  8999999999999999998764           2


Q ss_pred             EeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------------------CCceEEEEEccCC
Q 001352          481 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYSANG  542 (1093)
Q Consensus       481 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------------------~~~v~~~~~s~d~  542 (1093)
                      .+.+|.++|.+++|+|. ++..+++|+.||.| +||+++.+....+..+                  ...|.+++|+|+|
T Consensus       146 ~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg  223 (902)
T 2oaj_A          146 FPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS  223 (902)
T ss_dssp             CSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS
T ss_pred             ccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC
Confidence            34679999999999764 34689999999999 9999998877777654                  3579999999999


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeeeee--ee---ccc----------ccCCCeEEEEEc----CCC-CEEEEEeCC--
Q 001352          543 RRLFSCGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFD----TAK-DQILAAGDD--  600 (1093)
Q Consensus       543 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~~----------~~~~~v~~v~~~----~~~-~~l~~~~~d--  600 (1093)
                      ++|++++.    ++.|++||+.+++.+..  +.   +|.          .+...|.+++|+    |++ ..+++|+.+  
T Consensus       224 ~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~  299 (902)
T 2oaj_A          224 LHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISR  299 (902)
T ss_dssp             SEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTT
T ss_pred             CEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCC
Confidence            99999986    66799999999887653  21   221          123479999995    443 456667665  


Q ss_pred             ---CcEEEEECC------------------CCceEEEEecCCCCCCCceEEEec----------CCCEEEEEECCCeEEE
Q 001352          601 ---HVIKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENRIKI  649 (1093)
Q Consensus       601 ---g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~~~~~dg~i~i  649 (1093)
                         +.+.+|++.                  +++....+... +...+..+++.+          ++..+++++.||.|++
T Consensus       300 ~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~  378 (902)
T 2oaj_A          300 GDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIET  378 (902)
T ss_dssp             SSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEE
T ss_pred             CCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEE
Confidence               378899852                  22334444321 123467777755          3457899999999999


Q ss_pred             EEcCCCceee-------ecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCc
Q 001352          650 LETPESNSVD-------AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS  722 (1093)
Q Consensus       650 w~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~  722 (1093)
                      |++.++....       .+..+...++++++++                                 ...++|+.......
T Consensus       379 ~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~---------------------------------~~~~~w~~~~~~~~  425 (902)
T 2oaj_A          379 MLYPSGIFTDKASLFPQNLSWLRPLATTSMAAS---------------------------------VPNKLWLGALSAAQ  425 (902)
T ss_dssp             EETTTCCEECCGGGSCGGGTTBTTBEEEEEEEE---------------------------------EEHHHHHHHHHTTB
T ss_pred             EECCCCCcccccccCCCcccccCCCeeEEEEEE---------------------------------cCHHHHHHHHhccc
Confidence            9997764332       2334445566655542                                 12234542211110


Q ss_pred             cccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCC
Q 001352          723 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS  802 (1093)
Q Consensus       723 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  802 (1093)
                      ..   ..+..+|...+.+++|+|+++.+++++.|++|++||+.......         ..++..      ......+.+|
T Consensus       426 ~~---~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~~~~~------~l~~~~~~~h  487 (902)
T 2oaj_A          426 NK---DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NASFEV------NLSRTLNKAK  487 (902)
T ss_dssp             CC---CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TBCEEE------EHHHHTTCSS
T ss_pred             CC---CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------CceEEe------echhhcCCCC
Confidence            11   11234577778889999999999999999999999987542100         000000      0000001148


Q ss_pred             CCCeeEEEEccCCCEEEEEe-CCeEEEEEccCce---------------------------------------------e
Q 001352          803 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK---------------------------------------------T  836 (1093)
Q Consensus       803 ~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~---------------------------------------------~  836 (1093)
                      ...|.+++|+|||++||+++ ||+|+|||+.+++                                             +
T Consensus       488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  567 (902)
T 2oaj_A          488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP  567 (902)
T ss_dssp             SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE
T ss_pred             CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce
Confidence            89999999999999999998 7999999998762                                             4


Q ss_pred             EEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceee-----ecc-cccCCeEEEEEe-----CCC---CEE
Q 001352          837 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL---NIL  902 (1093)
Q Consensus       837 ~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----~dg---~~l  902 (1093)
                      +..+.+|.+.|++++||| || +||+|+.|++|+|||+.++..+.     .+. +|.+.|++++||     |||   ++|
T Consensus       568 ~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l  645 (902)
T 2oaj_A          568 STAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILM  645 (902)
T ss_dssp             EEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEE
T ss_pred             eEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEE
Confidence            677889999999999999 88 99999999999999998876653     344 899999999999     886   899


Q ss_pred             EEEeCCCcEEEEeC---CCCceeeeeeeecCCCccc--CCCCceEEE-Ec----------------------cCCCEEEE
Q 001352          903 VSSGGDAQIFVWDV---DGWGIQTCRSLQTPDGVMT--LAPSETHIQ-FH----------------------KDQTRFLL  954 (1093)
Q Consensus       903 ~s~s~dg~i~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-~s----------------------~dg~~l~~  954 (1093)
                      ++++.|++|++||+   .+++..     ..+.++..  ....|..++ |+                      +++..|++
T Consensus       646 ~sgs~D~tv~~wd~~p~~~g~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~  720 (902)
T 2oaj_A          646 VCGTDMGEVITYKILPASGGKFD-----VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT  720 (902)
T ss_dssp             EEEETTSEEEEEEEEECGGGCEE-----EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE
T ss_pred             EEEecCCcEEEEEEecCCCCcEE-----EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEE
Confidence            99999999999999   555422     22222221  013566665 65                      45554444


Q ss_pred             EeCCeEEEEEcCCcceeeeeecCCCCCEEEE---E------EccCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001352          955 VHETHLAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1019 (1093)
Q Consensus       955 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~---~------fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 1019 (1093)
                       .+..++||++.++++.++. .+|...+.++   .      |+++|..|++++.||+|++|++++++.+.....
T Consensus       721 -~~~~ir~~~~~~~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~  792 (902)
T 2oaj_A          721 -GFDDIRLITLGKSKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHI  792 (902)
T ss_dssp             -CSSEEEEECTTCCCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             -eccceEEEeCccccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccC
Confidence             4889999999999998876 4566667776   5      789999999999999999999999999988773

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.5e-57  Score=549.70  Aligned_cols=556  Identities=11%  Similarity=0.109  Sum_probs=467.1

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCC----CcccceEEecccccc-EEEEEeeC--CCCcEEEEEEcCC
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDD  465 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~-v~~~~~s~--d~~~l~l~s~~~d  465 (1093)
                      ...|.+.|.+++|+|||++||+++ ++.|++||+.++    +...   .+.+|... |++++|+|  +++  +|++++.|
T Consensus        14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~d   87 (615)
T 1pgu_A           14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDES   87 (615)
T ss_dssp             CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETT
T ss_pred             CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCC
Confidence            346889999999999999999998 789999999987    4443   78899999 99999999  999  89999999


Q ss_pred             CcEEEEECCCC--------ceeEEeecCCCCeEEeeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCce
Q 001352          466 KTIKVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGC  533 (1093)
Q Consensus       466 ~~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~v  533 (1093)
                      |.|++||+.++        +.+..+..|...|.+++|++  ++.+|++++.+    +.|++||  ..+....+..+...|
T Consensus        88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v  163 (615)
T 1pgu_A           88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRI  163 (615)
T ss_dssp             SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCE
T ss_pred             CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccE
Confidence            99999999855        67788889999999999964  67899999988    6888886  666778888999999


Q ss_pred             EEEEEccCCC-EEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCC---CeEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 001352          534 TRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDM  608 (1093)
Q Consensus       534 ~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~v~~~~~-~~~l~~~~~dg~i~iwd~  608 (1093)
                      .+++|+|+++ .+++++.    ++.|++||..+++.+..+.+|.   .   .|.+++|+|+ ++++++++.||.|++||+
T Consensus       164 ~~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~  236 (615)
T 1pgu_A          164 NACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG  236 (615)
T ss_dssp             EEEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred             EEEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence            9999999998 7888775    6779999999999999999887   6   8999999999 999999999999999999


Q ss_pred             CCCceEEEEecC--CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeeccccc----ccceeeeecCCCceeee
Q 001352          609 NKVQLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVTGA  682 (1093)
Q Consensus       609 ~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~  682 (1093)
                      .+++.+..+...  .+...|.+++|+ +++++++++.|+.|++||+.+++.+..+..+.    ..+.++.+         
T Consensus       237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---------  306 (615)
T 1pgu_A          237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA---------  306 (615)
T ss_dssp             TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE---------
T ss_pred             CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe---------
Confidence            999998888321  224569999999 99999999999999999999988877776653    23333332         


Q ss_pred             eccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEe
Q 001352          683 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW  762 (1093)
Q Consensus       683 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw  762 (1093)
                                    ++++++++++.++.+++|++........      ..+|...|.+++| |+   +++++.||.+++|
T Consensus       307 --------------~~~~~l~~~~~~g~i~~~d~~~~~~~~~------~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w  362 (615)
T 1pgu_A          307 --------------TGNGRIISLSLDGTLNFYELGHDEVLKT------ISGHNKGITALTV-NP---LISGSYDGRIMEW  362 (615)
T ss_dssp             --------------EETTEEEEEETTSCEEEEETTEEEEEEE------ECCCSSCEEEEET-TT---TEEEETTSCEEET
T ss_pred             --------------CCCCeEEEEECCCCEEEEECCCCcEEEE------EeCCCCCEEEEEe-cC---cEEECCCCeEEEE
Confidence                          3688899999999999999775332211      1348889999999 88   8999999999998


Q ss_pred             eecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEEC
Q 001352          763 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIM  841 (1093)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~  841 (1093)
                      ++.                         ++.      .+|...|.+++| +++..+++++ |+.+++|++.+++...   
T Consensus       363 ~~~-------------------------~~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~---  407 (615)
T 1pgu_A          363 SSS-------------------------SMH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS---  407 (615)
T ss_dssp             TTT-------------------------EEE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS---
T ss_pred             Ech-------------------------hhc------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC---
Confidence            753                         011      148899999999 5566677766 7999999998765432   


Q ss_pred             CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCCc
Q 001352          842 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWG  920 (1093)
Q Consensus       842 ~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-dg~i~iwd~~~~~  920 (1093)
                          .+.+++|+| ++.+++++ .++.+.+|++.+++.+..+. |...+.+++|+  +++|++++. |+.|++||+.+++
T Consensus       408 ----~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~  478 (615)
T 1pgu_A          408 ----QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE  478 (615)
T ss_dssp             ----CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEE
T ss_pred             ----CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcc
Confidence                688999999 88888877 88999999999999888887 88999999999  899999999 9999999999854


Q ss_pred             eeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEcc----------
Q 001352          921 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC----------  989 (1093)
Q Consensus       921 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~----------  989 (1093)
                      ...    ....++..   .|.+++|+|+|++|++ +.|+.|++||+.+++.+..+...|...|++++|+|          
T Consensus       479 ~~~----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~  551 (615)
T 1pgu_A          479 VSF----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEI  551 (615)
T ss_dssp             EEE----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CC
T ss_pred             ccc----cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccccc
Confidence            221    33444443   7999999999999999 57899999999999998875544999999999999          


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCC-ceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352          990 DCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus       990 dg~~l~t~~~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
                      |+++|++++.||.|++||+.++ ..+..+.        .|...|.  +++|+| |+. |++++.||+|++|++.
T Consensus       552 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~h~~~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          552 EEDLVATGSLDTNIFIYSVKRPMKIIKALN--------AHKDGVN--NLLWET-PST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             SCCEEEEEETTSCEEEEESSCTTCCEEETT--------SSTTCEE--EEEEEE-TTE-EEEEETTSCEEEEEEC
T ss_pred             CCCEEEEEcCCCcEEEEECCCCceechhhh--------cCccceE--EEEEcC-CCC-eEEecCCceEEEEeee
Confidence            9999999999999999999998 5665544        2345555  667888 467 9999999999999985

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-56  Score=554.05  Aligned_cols=618  Identities=9%  Similarity=0.044  Sum_probs=444.1

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      ..+|...|.+++|+|++++||+|+.||+|+||+..+++...    ...|..+|.+++|+| |+  +|++++.|++|++||
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd   85 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS   85 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence            45799999999999999999999999999999988764322    235888999999999 77  799999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce-----------EEecCCCCceEEEEEccC
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN  541 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~s~d  541 (1093)
                      +.+++++..+. |...|++++|++  ++.++++|+.||.|++||+++....           .....|...|.+++|+|+
T Consensus        86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~  162 (902)
T 2oaj_A           86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR  162 (902)
T ss_dssp             TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred             CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence            99999999886 778999999965  6689999999999999999876643           123457789999999996


Q ss_pred             C-CEEEEEecCCCCceeEEEEeCCCCeeeeeeecc---------------cccCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 001352          542 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI  605 (1093)
Q Consensus       542 ~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~v~~~~~~~~l~~~~~dg~i~i  605 (1093)
                      + ..+++++.    ++.| +||+++++.++.+.++               ..|...|.+++|+|++++|++++.||+|++
T Consensus       163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l  237 (902)
T 2oaj_A          163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF  237 (902)
T ss_dssp             EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence            4 67777664    6779 9999999998888766               112367999999999999999999999999


Q ss_pred             EECCCCceEEEEec-----CC-----------CCCCCceEEEec----CC-CEEEEEECC-----CeEEEEEcCC-----
Q 001352          606 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFNK----NG-TLLAVIANE-----NRIKILETPE-----  654 (1093)
Q Consensus       606 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s~----~~-~~l~~~~~d-----g~i~iw~~~~-----  654 (1093)
                      ||+.+++++.....     +.           +...|.+++|++    ++ .++++++.+     +.+.+|++..     
T Consensus       238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~  317 (902)
T 2oaj_A          238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS  317 (902)
T ss_dssp             EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred             EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence            99999988764221     21           123588999964    43 567777665     3788888531     


Q ss_pred             -------------Cceeeecc-cccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeecc
Q 001352          655 -------------SNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  720 (1093)
Q Consensus       655 -------------~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~  720 (1093)
                                   .+....+. .+...+..+.+.+.....          +.+  ..++..+++++.|+.+++|++..+.
T Consensus       318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~----------~~g--~~d~~~l~~~s~dg~l~~~~~~~g~  385 (902)
T 2oaj_A          318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPY----------FAG--CHNPGLILLILGNGEIETMLYPSGI  385 (902)
T ss_dssp             GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSH----------HHH--TBSCSEEEEEETTSCEEEEETTTCC
T ss_pred             ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCC----------cCC--CCCceeEEEEcCCCcEEEEECCCCC
Confidence                         11111111 123344444443211000          000  1345578888899999999974332


Q ss_pred             Cccc-cccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCC
Q 001352          721 PSEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD  799 (1093)
Q Consensus       721 ~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (1093)
                      .... .........|...|.+++|++...           .+|+.....                  . +...  ..+. 
T Consensus       386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~------------------~-~~~~--~~l~-  432 (902)
T 2oaj_A          386 FTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSA------------------A-QNKD--YLLK-  432 (902)
T ss_dssp             EECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHT------------------T-BCCC--CSCC-
T ss_pred             cccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhc------------------c-cCCC--Cccc-
Confidence            1110 001111123557888888865332           234321100                  0 0000  0122 


Q ss_pred             CCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeE----EE--EC-----CCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001352          800 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI----LT--IM-----PPSPTATSLAFNPHDNNVIAIGMDDS  867 (1093)
Q Consensus       800 ~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~----~~--~~-----~~~~~i~~l~~s~~d~~~lasg~~dg  867 (1093)
                       +|...+..++|+||+++|++++ |++|++||+.++...    ..  +.     +|...|.+++|+| |+++||+|+.||
T Consensus       433 -G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~Dg  510 (902)
T 2oaj_A          433 -GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETG  510 (902)
T ss_dssp             -CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTS
T ss_pred             -CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCc
Confidence             4777888899999999999998 799999999887421    11  11     7888999999999 999999999999


Q ss_pred             eEEEEEcCCcc---------------------------------------------eeeecccccCCeEEEEEeCCCCEE
Q 001352          868 TILIYNARSSE---------------------------------------------VISKLEGHSKRVTGLVFSDALNIL  902 (1093)
Q Consensus       868 ~i~iwd~~~~~---------------------------------------------~~~~l~~h~~~V~~l~~s~dg~~l  902 (1093)
                      +|+||++.+++                                             ++..+.+|.+.|++++||||| +|
T Consensus       511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l  589 (902)
T 2oaj_A          511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV  589 (902)
T ss_dssp             CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred             EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EE
Confidence            99999998762                                             367788999999999999999 99


Q ss_pred             EEEeCCCcEEEEeCCCCceeeeeeeecCC-CcccCCCCceEEEEc-----cCC---CEEEE-EeCCeEEEEEc---CCcc
Q 001352          903 VSSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLL-VHETHLAIYEA---EELT  969 (1093)
Q Consensus       903 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s-----~dg---~~l~~-~~d~~i~vwd~---~~~~  969 (1093)
                      |+|+.|++|+|||+.++.......+.... +|..   .|++++||     |||   ++|++ +.|++|++||+   .+|+
T Consensus       590 Asgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~  666 (902)
T 2oaj_A          590 GIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK  666 (902)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred             EEEeCCCcEEEEECCCCeEEEEeehhHhcccccc---ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence            99999999999999886543221223343 5554   89999999     886   78888 68899999999   7888


Q ss_pred             eeeeeecCC-----CCCEEEEE-Ec----------------------cCCCEEEEEeCCCcEEEEEcCCCceEEEecccc
Q 001352          970 CLKQWFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1021 (1093)
Q Consensus       970 ~~~~~~~~h-----~~~v~~~~-fs----------------------~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~ 1021 (1093)
                      +...+. +|     .++|.+++ |+                      ++|.+|+++  +..|+||++.+++...+...  
T Consensus       667 ~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~--  741 (902)
T 2oaj_A          667 FDVQLM-DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFK--  741 (902)
T ss_dssp             EEEEEE-EEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECS--
T ss_pred             EEEEec-CceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcc--
Confidence            776633 44     57787777 76                      456555443  77899999999988766531  


Q ss_pred             ccCCCCCCCccceeE-EE------eCCCCCCEEEEEeCCCcEEEEecCCCCCCcccCCC--cc-ccCCCCCCCCccc
Q 001352         1022 YLRPTTSCLHVYPHA-IA------AHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP--DE-IVGDQPTSTSEGD 1088 (1093)
Q Consensus      1022 ~~~~~~~~~~v~~~~-~~------~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~ 1088 (1093)
                            |...+..++ +.      |++ ++..|++++.||+|++|+++.-+.--....|  .+ .....+..+..||
T Consensus       742 ------~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~~~~~~~~~~~~~G~  811 (902)
T 2oaj_A          742 ------YPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIAAKYITESSVLRNGD  811 (902)
T ss_dssp             ------SCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCCHHHHTTCEECTTSC
T ss_pred             ------cceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHHhhccCCcccccccccceEEcCCCC
Confidence                  111222221 24      666 5789999999999999999876653322222  22 2333455555554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.2e-47  Score=482.88  Aligned_cols=555  Identities=14%  Similarity=0.177  Sum_probs=425.9

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      ++|.+|++.|.+++|||||+ +||+|+.||.|+|||+.+++.+..                   +.+|..+|.+++|+|+
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~   66 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIAR   66 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGG
T ss_pred             eeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeCC
Confidence            46789999999999999999 589999999999999999987765                   6689999999999999


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-ceeEEeecCCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGA  487 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~h~~  487 (1093)
                      +++||+++.||.|++||+.+++.+.   .+.+|.+.|++++|+|+++  ++++++.||.|++||+.++ .....+.+|..
T Consensus        67 ~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  141 (814)
T 3mkq_A           67 KNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEH  141 (814)
T ss_dssp             GTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSS
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCC
Confidence            9999999999999999999987554   6778999999999999999  7999999999999999987 67788899999


Q ss_pred             CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEcc--CCCEEEEEecCCCCceeEEEEeCC
Q 001352          488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNES  564 (1093)
Q Consensus       488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~  564 (1093)
                      .|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+|  ++.++++++.    ++.|++||..
T Consensus       142 ~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~~  216 (814)
T 3mkq_A          142 FVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQ  216 (814)
T ss_dssp             CEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEETT
T ss_pred             cEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEECC
Confidence            9999999652 56799999999999999999888777766655 7899999999  9999999876    6779999999


Q ss_pred             CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC--EEEEEE
Q 001352          565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAVIA  642 (1093)
Q Consensus       565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~  642 (1093)
                      +++.+..+.+|.   ..|.+++|+|+++++++++.||.|++||+.+++.+..+..+.  ..+.+++|+|++.  ++++++
T Consensus       217 ~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~  291 (814)
T 3mkq_A          217 TKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIASGF  291 (814)
T ss_dssp             TTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS--SSEEEEEECTTCGGGEEEEEE
T ss_pred             CCcEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC--CcEEEEEEccCCCceEEEEEe
Confidence            999999998887   899999999999999999999999999999999998887663  4689999999987  455554


Q ss_pred             CCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccc---------ee
Q 001352          643 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS---------EV  713 (1093)
Q Consensus       643 ~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i---------~~  713 (1093)
                       ++.+.+|++.....            .+.++                      |+++.+++++.+...         ..
T Consensus       292 -~~~~~~~~~~~~~~------------~~~~~----------------------~~g~~~~~~~~~~~~~~~~~~~~~~~  336 (814)
T 3mkq_A          292 -DNGFTVLSLGNDEP------------TLSLD----------------------PVGKLVWSGGKNAAASDIFTAVIRGN  336 (814)
T ss_dssp             -TTEEEEEECSCCSC------------CEEEC----------------------SSSEEEEECCTTSCTTCEEEEECCSC
T ss_pred             -CCCEEEEEcCCCCc------------eeEEC----------------------CCCCEEEECcccccceeeeeeecccc
Confidence             67788898765432            22333                      444444444333321         01


Q ss_pred             cceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCcee
Q 001352          714 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM  793 (1093)
Q Consensus       714 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  793 (1093)
                      |+..............  ..+...+.+++|+|+|+.+++++ +|.+.+|++.....                        
T Consensus       337 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~------------------------  389 (814)
T 3mkq_A          337 EEVEQDEPLSLQTKEL--GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN------------------------  389 (814)
T ss_dssp             CCCCSSSCBCCCCEEE--CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE------------------------
T ss_pred             cccccCccceeeeecC--CCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc------------------------
Confidence            2222211111111111  22556788999999999888887 89999998532110                        


Q ss_pred             eccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCC---CEEEEEeCCCeE
Q 001352          794 VNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN---NVIAIGMDDSTI  869 (1093)
Q Consensus       794 ~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~---~~lasg~~dg~i  869 (1093)
                             .+...+.+++|+||++++++++ ++.|++|+..        .+|...+.+++|+| ++   .+|++++.|+.|
T Consensus       390 -------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~--------~~~~~~v~~~~~s~-dg~~~~~l~~~~~d~~v  453 (814)
T 3mkq_A          390 -------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNF--------KEVTSWSVPMHSAI-DRLFSGALLGVKSDGFV  453 (814)
T ss_dssp             -------EEEEECSEEEECTTSSCEEEECTTCCEEEEETT--------EECTTCCCCCSSCC-CEEECSSSEEEEETTEE
T ss_pred             -------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECC--------CCccceEEcCCcCc-cceecceEEEEecCCEE
Confidence                   1345678999999999999997 6999999633        34777889999999 77   588889999999


Q ss_pred             EEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEE------eCCCcEEEEeCCC---------------Cceeeeeeee
Q 001352          870 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS------GGDAQIFVWDVDG---------------WGIQTCRSLQ  928 (1093)
Q Consensus       870 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~------s~dg~i~iwd~~~---------------~~~~~~~~~~  928 (1093)
                      ++||+.+++.+..+.+|..   .++|+|||++|+++      +.++.+.+|.-..               +.......+.
T Consensus       454 ~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (814)
T 3mkq_A          454 YFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLY  530 (814)
T ss_dssp             EEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEE
T ss_pred             EEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeee
Confidence            9999999999999988865   89999999999999      6666555554210               0000001111


Q ss_pred             cCCCcccCCCCceEEEEccCCCEEEEEe-CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001352          929 TPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1007 (1093)
Q Consensus       929 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd 1007 (1093)
                      ..      ...+.+..|.  +..++... .+.+..+-  .++...  ......++..+.|.+++..++....++.+.+|+
T Consensus       531 ~~------~~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~  598 (814)
T 3mkq_A          531 EL------SESITSGKWV--GDVFIFTTATNRLNYFV--GGKTYN--LAHYTKEMYLLGYLARDNKVYLADREVHVYGYE  598 (814)
T ss_dssp             EE------CSCCSEEEEE--TTEEEEECTTSEEEEEE--TTEEEE--EEECSSCCEEEEEEGGGTEEEEECTTCCEEEEE
T ss_pred             Ee------ccEEEeeEEe--CCEEEEEcCCCeEEEEe--CCeeEE--EEECCccEEEEEEEecCCEEEEEcCCCCEEEEE
Confidence            10      0135555654  34443332 34444432  222211  112345677777889999999999999999999


Q ss_pred             cCCC
Q 001352         1008 ASNL 1011 (1093)
Q Consensus      1008 ~~~~ 1011 (1093)
                      +...
T Consensus       599 l~~~  602 (814)
T 3mkq_A          599 ISLE  602 (814)
T ss_dssp             CCHH
T ss_pred             ECcH
Confidence            8643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3e-46  Score=470.05  Aligned_cols=479  Identities=15%  Similarity=0.183  Sum_probs=391.6

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +.+|.+.|.+++|+|+|++||+++.||.|+|||+.+++.+.   .+.+|..+|++++|+|+++  +|++++.||.|++||
T Consensus         9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN   83 (814)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred             eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence            67899999999999999999999999999999999986554   6779999999999999999  899999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEcc-CCCEEEEEec
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT  550 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~  550 (1093)
                      +.+++.+..+.+|...|.+++|++  ++.+|++++.||.|++||+.+. .....+..+...+.+++|+| ++..+++++.
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  161 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence            999999999999999999999965  6679999999999999999887 45567788899999999999 8889999886


Q ss_pred             CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352          551 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  628 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  628 (1093)
                          ++.|++||+.++.....+..+.  ...+.+++|+|  ++.++++++.||.|++||+.+++.+..+..+.  ..|.+
T Consensus       162 ----dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~  233 (814)
T 3mkq_A          162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF  233 (814)
T ss_dssp             ----TSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred             ----CCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEE
Confidence                6779999999888877776654  47899999999  99999999999999999999999998887654  46899


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccc-eeecc
Q 001352          629 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE-ISVEA  707 (1093)
Q Consensus       629 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~s~~~  707 (1093)
                      ++|+|+++++++++.||.|++|+..+++....+..+...+.+++++                      |++..+ ++.+.
T Consensus       234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----------------------~~~~~~~~~~~~  291 (814)
T 3mkq_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH----------------------PTGRKNYIASGF  291 (814)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEEC----------------------TTCGGGEEEEEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEc----------------------cCCCceEEEEEe
Confidence            9999999999999999999999999999999999999999999987                      455433 55566


Q ss_pred             cccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecccee-EEeeecCcccCcCcccccccCCcccCC
Q 001352          708 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQP  786 (1093)
Q Consensus       708 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v-~vw~~~~~~~~~~~~~~~~~~~~~~~~  786 (1093)
                      ++.+.+|++..                  ....+.++|+|+.+++++.+... .++...              ....|+.
T Consensus       292 ~~~~~~~~~~~------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~  339 (814)
T 3mkq_A          292 DNGFTVLSLGN------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAV--------------IRGNEEV  339 (814)
T ss_dssp             TTEEEEEECSC------------------CSCCEEECSSSEEEEECCTTSCTTCEEEEE--------------CCSCCCC
T ss_pred             CCCEEEEEcCC------------------CCceeEECCCCCEEEECcccccceeeeeee--------------ccccccc
Confidence            77788887542                  12346788999988877665321 111100              0011333


Q ss_pred             CCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001352          787 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD  866 (1093)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d  866 (1093)
                      ..+............+...+.+++|+|+|+++++++++.+.+|++.......     .+.+.+++|+| +++++|+++.+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-dg~~la~~~~~  413 (814)
T 3mkq_A          340 EQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-DSNSYALIDET  413 (814)
T ss_dssp             CSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-TSSCEEEECTT
T ss_pred             ccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-CCCeEEEEeCC
Confidence            3332221111111136677899999999999999999999999987655432     35688999999 89999999999


Q ss_pred             CeEEEEEcCCcceeeecccccCCeEEEEEeCCC---CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEE
Q 001352          867 STILIYNARSSEVISKLEGHSKRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI  943 (1093)
Q Consensus       867 g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  943 (1093)
                      |.|++|+        .+.+|...|.+++|+||+   ++|++++.|+.|++||+.+++     .+.....+.      ..+
T Consensus       414 g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~~------~~v  474 (814)
T 3mkq_A          414 GQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVNA------KDV  474 (814)
T ss_dssp             CCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSCE------EEE
T ss_pred             CcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecCC------CEE
Confidence            9999995        456788889999999998   689999999999999999865     333333332      289


Q ss_pred             EEccCCCEEEEE------eCCeEEEEEc
Q 001352          944 QFHKDQTRFLLV------HETHLAIYEA  965 (1093)
Q Consensus       944 ~~s~dg~~l~~~------~d~~i~vwd~  965 (1093)
                      +|||||++|+++      .++.+.+|..
T Consensus       475 ~~s~dg~~la~~~~~~~~~~~~~~~~~~  502 (814)
T 3mkq_A          475 IWSDNGELVMIVNTNSNGDEASGYTLLF  502 (814)
T ss_dssp             EECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred             EEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence            999999999997      6666666644

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.2e-45  Score=418.00  Aligned_cols=287  Identities=22%  Similarity=0.372  Sum_probs=266.2

Q ss_pred             hhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCC
Q 001352          330 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  409 (1093)
Q Consensus       330 ~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg  409 (1093)
                      .|.+|.+.|++++|+|+++ ++++|+.||+|+|||+.+++.+..                   +.+|...|.+++|+|+|
T Consensus       103 ~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~~  162 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSG  162 (410)
T ss_dssp             EEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTS
T ss_pred             eecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCCC
Confidence            3678999999999999998 599999999999999999987765                   77899999999999999


Q ss_pred             CEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCe
Q 001352          410 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  489 (1093)
Q Consensus       410 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v  489 (1093)
                      ++|++|+.|++|++||+.++++++   .+.+|...|.+++|+|+++  ++++|+.|++|++||+.++.++.++.+|...|
T Consensus       163 ~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v  237 (410)
T 1vyh_C          163 KLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWV  237 (410)
T ss_dssp             SEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccE
Confidence            999999999999999999887555   6779999999999999999  89999999999999999999999999999999


Q ss_pred             EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC--------------------CCEEEEEe
Q 001352          490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--------------------GRRLFSCG  549 (1093)
Q Consensus       490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d--------------------~~~l~~~~  549 (1093)
                      .+++++  +++.++++++.||.|++||+.+......+..|...|.+++|+|+                    |.++++++
T Consensus       238 ~~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs  315 (410)
T 1vyh_C          238 RMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  315 (410)
T ss_dssp             EEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             EEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence            999885  46789999999999999999999999999999999999999996                    66899988


Q ss_pred             cCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceE
Q 001352          550 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  629 (1093)
Q Consensus       550 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  629 (1093)
                      .    ++.|++||+.++..+..+.+|.   ..|.+++|+|++++|++|+.||+|++||+.+++++..+..|.  ..|.++
T Consensus       316 ~----D~~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~--~~v~~l  386 (410)
T 1vyh_C          316 R----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVTSL  386 (410)
T ss_dssp             T----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEEEE
T ss_pred             C----CCeEEEEECCCCceEEEEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC--CcEEEE
Confidence            6    6779999999999999999988   899999999999999999999999999999999999988664  469999


Q ss_pred             EEecCCCEEEEEECCCeEEEEEc
Q 001352          630 CFNKNGTLLAVIANENRIKILET  652 (1093)
Q Consensus       630 ~~s~~~~~l~~~~~dg~i~iw~~  652 (1093)
                      +|+|++.+|++++.||+|++|+.
T Consensus       387 ~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          387 DFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEcCCCCEEEEEeCCCcEEEEeC
Confidence            99999999999999999999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-39  Score=357.97  Aligned_cols=291  Identities=15%  Similarity=0.241  Sum_probs=262.8

Q ss_pred             HhhccCCCCceeeeecCC----CceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352          329 QTLIEGSSSPMSMDFHPV----QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  404 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spd----g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  404 (1093)
                      +.+.+|.+.|++++|+|+    ++ +|++|+.|++|+|||+.+++.....                 .+.+|...|.+++
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~~-----------------~l~gh~~~v~~~~   87 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQW-----------------SLEGHQLGVVSVD   87 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEEE-----------------EECCCSSCEEEEE
T ss_pred             eecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeeee-----------------eeccCCCCEEEEE
Confidence            346689999999999985    44 6999999999999999877543221                 1779999999999


Q ss_pred             ECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec
Q 001352          405 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  484 (1093)
Q Consensus       405 ~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  484 (1093)
                      |+|++.++++++.|++|++||+.+++.+.   .+..|...+.+++|+|+++  +|++++.|+.|++||+.+++....+..
T Consensus        88 ~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~  162 (321)
T 3ow8_A           88 ISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDT  162 (321)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEEC
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecC
Confidence            99999999999999999999999986554   6778899999999999999  899999999999999999999999999


Q ss_pred             CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352          485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  564 (1093)
Q Consensus       485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~  564 (1093)
                      |...|.+++|+|  ++.+|++++.||.|++||+.+++....+..+...|.+++|+|++++|++++.    ++.|++||+.
T Consensus       163 ~~~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iwd~~  236 (321)
T 3ow8_A          163 RGKFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIYDVQ  236 (321)
T ss_dssp             SSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEEETT
T ss_pred             CCceEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEEECC
Confidence            999999999954  6789999999999999999999888899999999999999999999999986    6679999999


Q ss_pred             CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC
Q 001352          565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  644 (1093)
Q Consensus       565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  644 (1093)
                      +++....+.+|.   ..|.+++|+|++++|++++.|++|++||+.+++++..+..+.  ..|.+++|+|++++|++++.|
T Consensus       237 ~~~~~~~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~~~d  311 (321)
T 3ow8_A          237 HANLAGTLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSVGDD  311 (321)
T ss_dssp             TCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETT
T ss_pred             CcceeEEEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEEeCC
Confidence            999999999888   899999999999999999999999999999999999987653  469999999999999999999


Q ss_pred             CeEEEEEcC
Q 001352          645 NRIKILETP  653 (1093)
Q Consensus       645 g~i~iw~~~  653 (1093)
                      |.|++||..
T Consensus       312 ~~i~vwd~p  320 (321)
T 3ow8_A          312 QEIHIYDCP  320 (321)
T ss_dssp             CCEEEEECC
T ss_pred             CeEEEEeCC
Confidence            999999964

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.8e-39  Score=360.76  Aligned_cols=291  Identities=19%  Similarity=0.277  Sum_probs=262.5

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      ++|.+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+..                   +..|...|.+++|+|+
T Consensus        49 ~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~  108 (340)
T 1got_B           49 RTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAYAPS  108 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEEECTT
T ss_pred             eeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEEECCC
Confidence            56889999999999999998 599999999999999999987765                   5679999999999999


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCc-ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  487 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~  487 (1093)
                      |++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++.   +++++.|++|++||+.+++.+..+.+|..
T Consensus       109 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~  185 (340)
T 1got_B          109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTG  185 (340)
T ss_dssp             SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCC
Confidence            99999999999999999987642 233446789999999999999875   88999999999999999999999999999


Q ss_pred             CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352          488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  567 (1093)
Q Consensus       488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~  567 (1093)
                      .|.+++|++  ++.++++++.||.|++||+++......+..|...|.+++|+|+++++++++.    ++.|++||+.+++
T Consensus       186 ~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~~~~~  259 (340)
T 1got_B          186 DVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRADQ  259 (340)
T ss_dssp             CEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTE
T ss_pred             ceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCc
Confidence            999999965  6679999999999999999999999999999999999999999999999986    6679999999988


Q ss_pred             eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeE
Q 001352          568 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI  647 (1093)
Q Consensus       568 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i  647 (1093)
                      .+..+.... +...|.+++|+|+++++++|+.||.|++||+.+++.+..+..|.  ..|.+++|+|+|.+|++++.|+.|
T Consensus       260 ~~~~~~~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s~D~~i  336 (340)
T 1got_B          260 ELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             EEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSCEEEEETTSCE
T ss_pred             EEEEEccCC-cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCEEEEEcCCccE
Confidence            877665322 23579999999999999999999999999999999998888664  469999999999999999999999


Q ss_pred             EEEE
Q 001352          648 KILE  651 (1093)
Q Consensus       648 ~iw~  651 (1093)
                      ++|+
T Consensus       337 ~iWd  340 (340)
T 1got_B          337 KIWN  340 (340)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            9996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.2e-39  Score=363.94  Aligned_cols=295  Identities=18%  Similarity=0.244  Sum_probs=265.5

Q ss_pred             HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      .++|.+|++.|++++|+||++ +||+|+.||+|+|||..+++....                   +..|...|.+++|+|
T Consensus        57 ~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~sp  116 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAYAP  116 (354)
T ss_dssp             EEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEECT
T ss_pred             EEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEECC
Confidence            457889999999999999998 599999999999999999887764                   556889999999999


Q ss_pred             CCCEEEEEEcCCEEEEEEccCCCc---ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec
Q 001352          408 DGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  484 (1093)
Q Consensus       408 dg~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  484 (1093)
                      +|.+||+|+.|+.+++|++.....   ......+.+|...|.+++|+|++.  .+++++.|++|++||+.+++++..+.+
T Consensus       117 ~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~~  194 (354)
T 2pbi_B          117 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFHG  194 (354)
T ss_dssp             TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEcC
Confidence            999999999999999999875421   223446778999999999999998  799999999999999999999999999


Q ss_pred             CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352          485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  564 (1093)
Q Consensus       485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~  564 (1093)
                      |...|.++++++.+++.+|++|+.||.|++||++++.....+..|...|.+++|+|++.++++++.    ++.|++||++
T Consensus       195 h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd~~  270 (354)
T 2pbi_B          195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYDLR  270 (354)
T ss_dssp             CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred             CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEECC
Confidence            999999999998888899999999999999999999999999999999999999999999999986    6679999999


Q ss_pred             CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC
Q 001352          565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  644 (1093)
Q Consensus       565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  644 (1093)
                      +++.+..+..+. ....+.+++|+|++.++++|+.|+.|++||+.+++.+..+..|  ...|.+++|+|+|++|++++.|
T Consensus       271 ~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h--~~~v~~l~~spdg~~l~sgs~D  347 (354)
T 2pbi_B          271 ADREVAIYSKES-IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH--ENRVSTLRVSPDGTAFCSGSWD  347 (354)
T ss_dssp             TTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSCEEEEETT
T ss_pred             CCcEEEEEcCCC-cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC--CCcEEEEEECCCCCEEEEEcCC
Confidence            988777665433 2246899999999999999999999999999999998888765  4569999999999999999999


Q ss_pred             CeEEEEE
Q 001352          645 NRIKILE  651 (1093)
Q Consensus       645 g~i~iw~  651 (1093)
                      ++|++|+
T Consensus       348 ~~v~vW~  354 (354)
T 2pbi_B          348 HTLRVWA  354 (354)
T ss_dssp             SEEEEEC
T ss_pred             CCEEecC
Confidence            9999995

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5e-39  Score=350.96  Aligned_cols=290  Identities=18%  Similarity=0.309  Sum_probs=255.1

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      ++|.+|++.|++++|||||+ +|++|+.||+|+|||+.++..+..                   +.+|..+|.+++|+|+
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~~~   66 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFIAR   66 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGG
T ss_pred             EeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEeCC
Confidence            46889999999999999998 589999999999999999987765                   6679999999999999


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-ceeEEeecCCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGA  487 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~h~~  487 (1093)
                      +++|++|+.|++|++||+.+++.+.   .+.+|...|.+++|+|+++  ++++|+.|++|++||+.++ .....+.+|..
T Consensus        67 ~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~  141 (304)
T 2ynn_A           67 KNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEH  141 (304)
T ss_dssp             GTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred             CCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCC
Confidence            9999999999999999999987554   6789999999999999999  8999999999999999988 45577899999


Q ss_pred             CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCceEEEEEcc--CCCEEEEEecCCCCceeEEEEeCC
Q 001352          488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNES  564 (1093)
Q Consensus       488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~  564 (1093)
                      .|.+++|+|. ++.+|++|+.||+|++||+........+. .+...+..+.|+|  ++.+|++++.    ++.|++||+.
T Consensus       142 ~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd~~  216 (304)
T 2ynn_A          142 FVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQ  216 (304)
T ss_dssp             CEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEETT
T ss_pred             cEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEeCC
Confidence            9999999764 45799999999999999998877666554 4556888899987  7789999986    7789999999


Q ss_pred             CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC--EEEEEE
Q 001352          565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAVIA  642 (1093)
Q Consensus       565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~  642 (1093)
                      +++++..+.+|.   ..|.+++|+|++++|++|+.||+|++||..+++....+..+.  ..+.+++|+|++.  ++++++
T Consensus       217 ~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~asg~  291 (304)
T 2ynn_A          217 TKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIASGF  291 (304)
T ss_dssp             TTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEEEEE
T ss_pred             CCccceeeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEEEec
Confidence            999999999988   899999999999999999999999999999999999987653  4588999999875  577776


Q ss_pred             CCCeEEEEEcCC
Q 001352          643 NENRIKILETPE  654 (1093)
Q Consensus       643 ~dg~i~iw~~~~  654 (1093)
                      .+ .+.+|++..
T Consensus       292 ~~-g~~~~~~~~  302 (304)
T 2ynn_A          292 DN-GFTVLSLGN  302 (304)
T ss_dssp             TT-EEEEEECC-
T ss_pred             CC-ceEEEEecc
Confidence            65 567777653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.3e-38  Score=350.27  Aligned_cols=298  Identities=19%  Similarity=0.240  Sum_probs=256.8

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      .+|.||++.|++++|+|++..+|++|+.|++|++||+.+.......              ....+.+|...|.+++|+|+
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~s~d   76 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTLTAD   76 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEECTT
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEECCC
Confidence            4688999999999999977447999999999999998754322111              11227789999999999999


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  488 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  488 (1093)
                      |++|++|+.|++|++||+.+++.+.   .+.+|...|.+++|+|++.  ++++|+.|++|++||+. ++++..+.+|...
T Consensus        77 g~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~  150 (319)
T 3frx_A           77 GAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHNDW  150 (319)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSSC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCCc
Confidence            9999999999999999999987554   6789999999999999999  89999999999999975 6778889999999


Q ss_pred             eEEeeecccC----CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352          489 VYSLCPHAKE----NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  564 (1093)
Q Consensus       489 v~~~~~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~  564 (1093)
                      |.++++.+..    ++..+++++.|+.|++||+........+..|...|.+++|+|+|++|++++.    ++.|++||+.
T Consensus       151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~~  226 (319)
T 3frx_A          151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLA  226 (319)
T ss_dssp             EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred             EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECC
Confidence            9999997643    4568999999999999999998888889999999999999999999999986    7789999999


Q ss_pred             CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC------CCCCCceEEEecCCCEE
Q 001352          565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNGTLL  638 (1093)
Q Consensus       565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~~~~l  638 (1093)
                      +++.+..+..+    ..+.+++|+|++.++++++.+ .+++|++..+..+..+..+.      +...+.+++|+|+|++|
T Consensus       227 ~~~~~~~~~~~----~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  301 (319)
T 3frx_A          227 AKKAMYTLSAQ----DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL  301 (319)
T ss_dssp             TTEEEEEEECC----SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEE
T ss_pred             CCcEEEEecCC----CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEE
Confidence            99998888764    479999999999988887755 59999999888777765321      12457799999999999


Q ss_pred             EEEECCCeEEEEEcCCC
Q 001352          639 AVIANENRIKILETPES  655 (1093)
Q Consensus       639 ~~~~~dg~i~iw~~~~~  655 (1093)
                      ++++.||.|++|++.+.
T Consensus       302 ~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          302 FAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEETTSCEEEEEEEEC
T ss_pred             EEeecCceEEEEEEeec
Confidence            99999999999998653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.1e-39  Score=364.88  Aligned_cols=303  Identities=17%  Similarity=0.258  Sum_probs=263.0

Q ss_pred             HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      .++|.||++.|++++|+|+|++ |++|+.||+|+|||+.+++.+..                   +.+|...|.+++|+|
T Consensus        59 ~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~~s~  118 (380)
T 3iz6_a           59 CRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECAFAP  118 (380)
T ss_dssp             EEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCEECT
T ss_pred             eecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEEECC
Confidence            4678899999999999999985 99999999999999999987765                   667999999999999


Q ss_pred             CCCEEEEEEcCCEEEEEEccCCCc----ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe-
Q 001352          408 DGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-  482 (1093)
Q Consensus       408 dg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-  482 (1093)
                      +|++||+|+.|+.|++||+.+...    ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+..+ 
T Consensus       119 ~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~  197 (380)
T 3iz6_a          119 NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISIFG  197 (380)
T ss_dssp             TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEEEC
T ss_pred             CCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEEee
Confidence            999999999999999999976421    1222357799999999999998654 6999999999999999999998887 


Q ss_pred             ----ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001352          483 ----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  557 (1093)
Q Consensus       483 ----~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~  557 (1093)
                          .+|...|.++++++. ++.++++|+.||.|++||++. ......+.+|...|.+++|+|++++|++++.    ++.
T Consensus       198 ~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~  272 (380)
T 3iz6_a          198 SEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD----DGT  272 (380)
T ss_dssp             CCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----SSC
T ss_pred             cccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----CCe
Confidence                679999999998643 567999999999999999984 4667788899999999999999999999986    667


Q ss_pred             EEEEeCCCCeeeeeeecccc----cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec--CCCCCCCceEEE
Q 001352          558 LVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA--GGGLPENPRICF  631 (1093)
Q Consensus       558 i~iwd~~~~~~~~~~~~~~~----~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~v~~  631 (1093)
                      |++||+.+++.+..+..+..    +...+.+++|+|+++++++|+.||.|++||..+++.+..+..  ..+...|.+++|
T Consensus       273 i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~  352 (380)
T 3iz6_a          273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL  352 (380)
T ss_dssp             EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred             EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence            99999999999888766531    113489999999999999999999999999999998877732  234567999999


Q ss_pred             ecCCCEEEEEECCCeEEEEEcCCCc
Q 001352          632 NKNGTLLAVIANENRIKILETPESN  656 (1093)
Q Consensus       632 s~~~~~l~~~~~dg~i~iw~~~~~~  656 (1093)
                      +|+|++|++|+.|++|++|++...+
T Consensus       353 s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          353 SSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCCCCEEEEeeCCCCEEEEecCCCc
Confidence            9999999999999999999987653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.9e-38  Score=362.04  Aligned_cols=286  Identities=18%  Similarity=0.287  Sum_probs=266.4

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +.+|..+|++++|+|++.+|++|+.|++|+|||+.+++..+   .+.+|.+.|.+++|+|+++  +|++|+.|++|++||
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD  178 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence            56899999999999999999999999999999999987655   7889999999999999999  899999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      +.+++++.++.+|...|.+++|+|  ++.+|++++.|++|++||+.++.....+..|...+.++.++|+++++++++.  
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~--  254 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN--  254 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence            999999999999999999999965  5679999999999999999999999999999999999999999999999986  


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC--------------------CCEEEEEeCCCcEEEEECCCCc
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--------------------KDQILAAGDDHVIKIWDMNKVQ  612 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~  612 (1093)
                        ++.|++||+.+++....+.+|.   ..|.+++|+|+                    +.++++|+.|++|++||+.+++
T Consensus       255 --D~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~  329 (410)
T 1vyh_C          255 --DQTVRVWVVATKECKAELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  329 (410)
T ss_dssp             --TSCEEEEETTTCCEEEEECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             --CCeEEEEECCCCceeeEecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence              6679999999999999998887   89999999996                    6789999999999999999999


Q ss_pred             eEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEec
Q 001352          613 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN  692 (1093)
Q Consensus       613 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  692 (1093)
                      ++..+..|.  ..|.+++|+|+|++|++++.|+.|++||..+++.+..+.+|...|.+++|+                  
T Consensus       330 ~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------  389 (410)
T 1vyh_C          330 CLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH------------------  389 (410)
T ss_dssp             EEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC------------------
T ss_pred             eEEEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc------------------
Confidence            999888664  468999999999999999999999999999999999999999999999996                  


Q ss_pred             CCCCCCCccceeecccccceecce
Q 001352          693 EDPKEDVKPEISVEAENKSEVEKP  716 (1093)
Q Consensus       693 ~~~s~d~~~l~s~~~d~~i~~w~~  716 (1093)
                          |++.++++++.|++|++|+.
T Consensus       390 ----~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          390 ----KTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ----SSSSCEEEEETTSEEEEEC-
T ss_pred             ----CCCCEEEEEeCCCcEEEEeC
Confidence                77888999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.9e-38  Score=347.58  Aligned_cols=286  Identities=14%  Similarity=0.182  Sum_probs=262.6

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +.+|.+.|.+++|+||+++|++|+.|++|++||+.+++.+.   .+..|...|.+++|+|+++  ++++|+.|+.|++||
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~  125 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN  125 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence            77899999999999999999999999999999999886554   6778999999999999999  899999999999999


Q ss_pred             CCCC----ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001352          473 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  548 (1093)
Q Consensus       473 ~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~  548 (1093)
                      +.++    +....+.+|...|.++.|.+.  + .+++++.|+.|++||+.++.....+..|...|.+++|+|++++++++
T Consensus       126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          126 LKTREGNVRVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             TTTCSBSCEEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CccCCCcceeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence            9876    355678899999999999653  2 59999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352          549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  628 (1093)
Q Consensus       549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  628 (1093)
                      +.    ++.|++||+.++..+..+.+|.   ..|.+++|+|+++++++|+.||+|++||+.+++.+..+........|.+
T Consensus       203 ~~----d~~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~  275 (340)
T 1got_B          203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             ET----TSCEEEEETTTCSEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             eC----CCcEEEEECCCCeeEEEEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence            86    6679999999999999999888   8999999999999999999999999999999988888765554456899


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352          629 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  708 (1093)
Q Consensus       629 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  708 (1093)
                      ++|+|+|+++++++.|+.|++||..+...+..+.+|...|.+++|+                      |++.++++++.|
T Consensus       276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~s~s~D  333 (340)
T 1got_B          276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD  333 (340)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred             EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc----------------------CCCCEEEEEcCC
Confidence            9999999999999999999999999999999999999999999986                      788999999999


Q ss_pred             ccceecc
Q 001352          709 NKSEVEK  715 (1093)
Q Consensus       709 ~~i~~w~  715 (1093)
                      ++|++|+
T Consensus       334 ~~i~iWd  340 (340)
T 1got_B          334 SFLKIWN  340 (340)
T ss_dssp             SCEEEEC
T ss_pred             ccEEecC
Confidence            9999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.7e-39  Score=357.98  Aligned_cols=320  Identities=16%  Similarity=0.205  Sum_probs=230.4

Q ss_pred             ceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCC
Q 001352          702 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP  781 (1093)
Q Consensus       702 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~  781 (1093)
                      ++.++.+.....|++....+          ..|...|.+++|+|||++|++++.+. +++||-               .+
T Consensus        19 ~~~~~g~~~~~~w~~p~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~---------------~v   72 (357)
T 4g56_B           19 YFQSNGSSKGSAWGRPVTAP----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG---------------SI   72 (357)
T ss_dssp             -------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------EE
T ss_pred             EEecCCCccccccCCCCCCc----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------eE
Confidence            34445567778888653222          23888999999999999999998742 233331               23


Q ss_pred             cccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEE----EECCCCCCeEEEEEcCCCC
Q 001352          782 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLAFNPHDN  857 (1093)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~d~  857 (1093)
                      ++|+..++...........+|...|.+++|+|++++++++.||+|+|||+.+++...    ...+|...|++++|+| ++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg  151 (357)
T 4g56_B           73 WVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DG  151 (357)
T ss_dssp             EEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SS
T ss_pred             EEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CC
Confidence            334444333222222222247889999999999998887778999999999876543    3457999999999999 99


Q ss_pred             CEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccC
Q 001352          858 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  936 (1093)
Q Consensus       858 ~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  936 (1093)
                      ++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++. ++++++.|++|++||+.+++....  + ....+.  
T Consensus       152 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--~-~~~~~~--  226 (357)
T 4g56_B          152 TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--I-DFCASD--  226 (357)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB--C-CCTTCC--
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee--e-eecccc--
Confidence            9999999999999999999999999999999999999999885 789999999999999988653321  1 111222  


Q ss_pred             CCCceEEEEccCC-CEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCce
Q 001352          937 APSETHIQFHKDQ-TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEV 1013 (1093)
Q Consensus       937 ~~~v~~~~~s~dg-~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg-~~l~t~~~dg~v~vwd~~~~~~ 1013 (1093)
                       ..+.+++|+|++ .+|++ +.|+.|++||+.+++++.. +.+|...|.+++|+|++ ++|++++.||+|+|||+.++++
T Consensus       227 -~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~  304 (357)
T 4g56_B          227 -TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV  304 (357)
T ss_dssp             -SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred             -ccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence             368999999985 56777 5789999999999998877 56899999999999997 5799999999999999999987


Q ss_pred             EEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001352         1014 QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1066 (1093)
Q Consensus      1014 ~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~ 1066 (1093)
                      +..+.         |...|.  +++|+|.|+.+|++++.||+|++|+++..+.
T Consensus       305 ~~~~~---------H~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          305 FRDLS---------HRDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             EEECC---------CSSCEE--EEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             eEECC---------CCCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            75432         455565  6789997789999999999999999976554

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.1e-38  Score=344.47  Aligned_cols=288  Identities=16%  Similarity=0.244  Sum_probs=263.2

Q ss_pred             ecCCCCCeEEEEECCC----CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcE
Q 001352          393 VRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  468 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~d----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  468 (1093)
                      +.+|.+.|.+++|+|+    +++|++|+.|++|+|||+.+++. .....+.+|...|.+++|++++.  ++++++.|++|
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i  104 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI  104 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence            5689999999999985    67999999999999999987643 22336889999999999999999  89999999999


Q ss_pred             EEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001352          469 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  548 (1093)
Q Consensus       469 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~  548 (1093)
                      ++||+.+++.+..+..|...+.+++|+|  ++.+|++++.||.|++|++++......+..+...+.+++|+|++++|+++
T Consensus       105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg  182 (321)
T 3ow8_A          105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG  182 (321)
T ss_dssp             EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence            9999999999999999999999999954  67899999999999999999999988888898999999999999999999


Q ss_pred             ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352          549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  628 (1093)
Q Consensus       549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  628 (1093)
                      +.    ++.|++||+.+++.+..+.+|.   ..|.+++|+|++++|++++.||.|++||+.+++....+..+  ...|.+
T Consensus       183 ~~----dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~  253 (321)
T 3ow8_A          183 AI----DGIINIFDIATGKLLHTLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH--ASWVLN  253 (321)
T ss_dssp             ET----TSCEEEEETTTTEEEEEECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC--SSCEEE
T ss_pred             cC----CCeEEEEECCCCcEEEEEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC--CCceEE
Confidence            86    6679999999999999999887   89999999999999999999999999999999998888765  446999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352          629 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  708 (1093)
Q Consensus       629 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  708 (1093)
                      ++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+                      |+++++++++.|
T Consensus       254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s----------------------~~g~~l~s~~~d  311 (321)
T 3ow8_A          254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN----------------------GNGSKIVSVGDD  311 (321)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETT
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEEC----------------------CCCCEEEEEeCC
Confidence            9999999999999999999999999999999999999999999986                      788899999999


Q ss_pred             ccceecce
Q 001352          709 NKSEVEKP  716 (1093)
Q Consensus       709 ~~i~~w~~  716 (1093)
                      ++|++||.
T Consensus       312 ~~i~vwd~  319 (321)
T 3ow8_A          312 QEIHIYDC  319 (321)
T ss_dssp             CCEEEEEC
T ss_pred             CeEEEEeC
Confidence            99999995

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.4e-38  Score=347.52  Aligned_cols=304  Identities=15%  Similarity=0.228  Sum_probs=247.8

Q ss_pred             HHhhccCCC-CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          328 AQTLIEGSS-SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       328 ~~~l~~h~~-~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      +++|.+|.+ .|++++|+|||+ +||+|+.|++|+|||+.++......                ....+|...|.+++|+
T Consensus         8 ~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~~----------------~~~~~h~~~v~~~~~s   70 (345)
T 3fm0_A            8 LGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKS----------------VLSEGHQRTVRKVAWS   70 (345)
T ss_dssp             EEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEEE----------------EECSSCSSCEEEEEEC
T ss_pred             eeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceeee----------------eeccccCCcEEEEEEC
Confidence            356788988 999999999999 5999999999999999887644321                1146899999999999


Q ss_pred             CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc---eeEEee
Q 001352          407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFE  483 (1093)
Q Consensus       407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~---~~~~~~  483 (1093)
                      |+|++||+|+.|++|++||+.++.. .....+.+|...|.+++|+|+++  +|++|+.|++|++||+.++.   ++..+.
T Consensus        71 p~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~~  147 (345)
T 3fm0_A           71 PCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSVLN  147 (345)
T ss_dssp             TTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEEEC
T ss_pred             CCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEEec
Confidence            9999999999999999999987642 23446889999999999999999  89999999999999998764   466788


Q ss_pred             cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001352          484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  561 (1093)
Q Consensus       484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw  561 (1093)
                      +|...|.+++|+|  ++.+|++++.|+.|++||......  ...+..|...|.+++|+|+|++|++++.    ++.|++|
T Consensus       148 ~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~iW  221 (345)
T 3fm0_A          148 SHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVRIW  221 (345)
T ss_dssp             CCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEE
T ss_pred             CcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEEEe
Confidence            9999999999965  567999999999999999987653  4577889999999999999999999986    6679999


Q ss_pred             eCCCC---------------eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----EEE---Eec
Q 001352          562 NESEG---------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL----LTT---IDA  619 (1093)
Q Consensus       562 d~~~~---------------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~---~~~  619 (1093)
                      +....               .++..+.+.  |...|.+++|+|++..+++++.|+.|++|+...+..    ...   ...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~  299 (345)
T 3fm0_A          222 RQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH  299 (345)
T ss_dssp             EEECTTCTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET
T ss_pred             ccccCCCCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec
Confidence            96322               223334431  247899999999999999999999999999876431    111   112


Q ss_pred             CCCCCCCceEEEecCC-CEEEEEECCCeEEEEEcCCCceee
Q 001352          620 GGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD  659 (1093)
Q Consensus       620 ~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~  659 (1093)
                      ..+...|.+++|+|++ .+|++++.||+|++|+..+.+...
T Consensus       300 ~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             TSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred             ccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence            2445679999999987 599999999999999998776543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.3e-37  Score=337.15  Aligned_cols=292  Identities=18%  Similarity=0.311  Sum_probs=258.7

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      .+|.+|.+.|++++|+|+|+ +|++|+.||.|++||+.+++....                   +.+|...|.+++|+|+
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~   76 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAWSSD   76 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTT
T ss_pred             EEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEEcCC
Confidence            46789999999999999998 589999999999999999887654                   6789999999999999


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  488 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  488 (1093)
                      +++|++++.|+.|++||+.+++.+.   .+.+|...|.+++|+|+++  ++++|+.|+.|++||+.+++.+..+..|..+
T Consensus        77 ~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  151 (312)
T 4ery_A           77 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDP  151 (312)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             CCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence            9999999999999999999987554   6789999999999999999  8999999999999999999999999999999


Q ss_pred             eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352          489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  567 (1093)
Q Consensus       489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~  567 (1093)
                      |.+++|++  ++.++++++.||.|++||+.+.+....+. .+...+..++|+|+++++++++.    ++.|++||+.+++
T Consensus       152 v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~  225 (312)
T 4ery_A          152 VSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYSKGK  225 (312)
T ss_dssp             EEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETTTTE
T ss_pred             EEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCCc
Confidence            99999965  66799999999999999999888776654 45567999999999999999986    6679999999999


Q ss_pred             eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEE--CCC
Q 001352          568 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--NEN  645 (1093)
Q Consensus       568 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--~dg  645 (1093)
                      .+..+.+|......+......+++.++++|+.||.|++||+.+++.+..+..|.  ..|.+++|+|+++++++++  .|+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~~~d~  303 (312)
T 4ery_A          226 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--DVVISTACHPTENIIASAALENDK  303 (312)
T ss_dssp             EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECSSSSEEEEEECTTTC
T ss_pred             EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC--CcEEEEeecCcCCceEEEEccCCc
Confidence            999998877333334444455778899999999999999999999999887664  4689999999999999997  699


Q ss_pred             eEEEEEcC
Q 001352          646 RIKILETP  653 (1093)
Q Consensus       646 ~i~iw~~~  653 (1093)
                      .|++|+..
T Consensus       304 ~i~~W~~d  311 (312)
T 4ery_A          304 TIKLWKSD  311 (312)
T ss_dssp             CEEEEECC
T ss_pred             cEEEecCC
Confidence            99999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=344.30  Aligned_cols=298  Identities=13%  Similarity=0.121  Sum_probs=239.0

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccc-eeeeeeecCCCCCeEEEEECCCCCE
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSM-LFKTALVRDPGVSVNRVVWSPDGSL  411 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~v~~s~dg~~  411 (1093)
                      .|...|.+++|||||+ +|++++ |+++++||...         .+|+...... .-.......|...|.+++|+||+ +
T Consensus        28 ~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~   95 (344)
T 4gqb_B           28 CMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G   95 (344)
T ss_dssp             SCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred             cccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence            4667899999999998 577776 78899998421         1111100000 00000122367789999999985 6


Q ss_pred             EEEEEcCCEEEEEEccCCCcccce-EEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352          412 LGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  490 (1093)
Q Consensus       412 las~~~d~~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~  490 (1093)
                      |++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+  +|++|+.|++|++||+.+++++..+.+|...|+
T Consensus        96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~  173 (344)
T 4gqb_B           96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT  173 (344)
T ss_dssp             EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence            889999999999999998865533 23568999999999999999  899999999999999999999999999999999


Q ss_pred             EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCceEEEEEccC-CCEEEEEecCCCCceeEEEEeCCCCe
Q 001352          491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGA  567 (1093)
Q Consensus       491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~~~  567 (1093)
                      +++|++... .++++++.||+|++||+++.+....+..  +...+.+++|+|+ ++++++++.    ++.|++||+++++
T Consensus       174 ~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~  248 (344)
T 4gqb_B          174 CVAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTS  248 (344)
T ss_dssp             EEEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--
T ss_pred             EEEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCc
Confidence            999976432 5889999999999999999888776643  4557899999995 567777765    6789999999999


Q ss_pred             eeeeeecccccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC-EEEEEECCC
Q 001352          568 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANEN  645 (1093)
Q Consensus       568 ~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg  645 (1093)
                      ++..+.+|.   ..|.+++|+|++ ++|++|+.|++|+|||+.++++.. +.  ++...|.+++|+|+++ +|++++.|+
T Consensus       249 ~~~~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~s~D~  322 (344)
T 4gqb_B          249 CVLSSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTVGWDH  322 (344)
T ss_dssp             CCEEEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             EEEEEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence            999999988   899999999998 578899999999999999988654 33  3455799999999886 677899999


Q ss_pred             eEEEEEcCCC
Q 001352          646 RIKILETPES  655 (1093)
Q Consensus       646 ~i~iw~~~~~  655 (1093)
                      +|++|++.+.
T Consensus       323 ~v~~w~v~~~  332 (344)
T 4gqb_B          323 QVVHHVVPTE  332 (344)
T ss_dssp             CEEEEECCC-
T ss_pred             eEEEEECCCC
Confidence            9999999865

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.6e-38  Score=352.04  Aligned_cols=294  Identities=13%  Similarity=0.148  Sum_probs=238.6

Q ss_pred             ccCCCCceeeeecCCCceEEEEEcc------CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352          332 IEGSSSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  405 (1093)
Q Consensus       332 ~~h~~~V~~~~~spdg~~llasg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  405 (1093)
                      ..|.+.|++++|||||+ +||+|+.      |+.|++|+..++........               ...+|...|.+++|
T Consensus        39 ~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~V~~~~~  102 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---------------AGVQTEAGVTDVAW  102 (357)
T ss_dssp             -CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCS---------------EEEECSSCEEEEEE
T ss_pred             ccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEec---------------ccCCCCCCEEEEEE
Confidence            47999999999999998 5888887      67889998887764422110               13468899999999


Q ss_pred             CCCCCEEEEEEcCCEEEEEEccCCCcccc-eEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec
Q 001352          406 SPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  484 (1093)
Q Consensus       406 s~dg~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  484 (1093)
                      +|++++| +++.||+|+|||+.+++.... .....+|...|++++|+|+++  +|++|+.|++|++||+.+++++..+.+
T Consensus       103 s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~  179 (357)
T 4g56_B          103 VSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNA  179 (357)
T ss_dssp             ETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             cCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence            9998655 577899999999998875432 224568999999999999999  899999999999999999999999999


Q ss_pred             CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe--cCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEE
Q 001352          485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEW  561 (1093)
Q Consensus       485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iw  561 (1093)
                      |...|++++|++..+ .++++++.||.|++||+++.+....+  ..+...+.+++|+|++ .++++++.    ++.|++|
T Consensus       180 h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~w  254 (357)
T 4g56_B          180 HSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLV  254 (357)
T ss_dssp             CSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEE
T ss_pred             CCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEE
Confidence            999999999976543 47899999999999999988766544  3455679999999985 56777765    6679999


Q ss_pred             eCCCCeeeeeeecccccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec-CCCEEE
Q 001352          562 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLA  639 (1093)
Q Consensus       562 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~  639 (1093)
                      |+.+++.++.+.+|.   ..|.+++|+|++ ++|++|+.|++|+|||+++++.+..+.   +...|++++|+| ++.+|+
T Consensus       255 d~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~---H~~~V~~vafsP~d~~~l~  328 (357)
T 4g56_B          255 NIKNPDSAQTSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS---HRDFVTGVAWSPLDHSKFT  328 (357)
T ss_dssp             ESSCGGGCEEECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC---CSSCEEEEEECSSSTTEEE
T ss_pred             ECCCCcEeEEEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC---CCCCEEEEEEeCCCCCEEE
Confidence            999999999999887   899999999987 578899999999999999998877653   345699999998 899999


Q ss_pred             EEECCCeEEEEEcCCC
Q 001352          640 VIANENRIKILETPES  655 (1093)
Q Consensus       640 ~~~~dg~i~iw~~~~~  655 (1093)
                      +++.||+|++|++...
T Consensus       329 s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          329 TVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEETTSCEEEEECC--
T ss_pred             EEcCCCeEEEEECCCC
Confidence            9999999999999754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=9.5e-38  Score=345.20  Aligned_cols=296  Identities=13%  Similarity=0.159  Sum_probs=226.8

Q ss_pred             cccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc
Q 001352          734 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  813 (1093)
Q Consensus       734 ~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  813 (1093)
                      +...|.+++|+|||+++++++ |+++++|+....               +|+................+...|.+++|+|
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~   92 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVG   92 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence            556799999999999776655 778888874321               1111000000000000002567899999999


Q ss_pred             CCCEEEEEeCCeEEEEEccCceeEEE----ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCC
Q 001352          814 NDAYLFSASGGVISLYIVMTFKTILT----IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR  889 (1093)
Q Consensus       814 dg~~la~~~dg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~  889 (1093)
                      |+.+++.+.||+|+|||+.+++.+..    +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.
T Consensus        93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~  171 (344)
T 4gqb_B           93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ  171 (344)
T ss_dssp             TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence            97655444489999999998876543    448999999999999 9999999999999999999999999999999999


Q ss_pred             eEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccC-CCEEEE-EeCCeEEEEEcC
Q 001352          890 VTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAE  966 (1093)
Q Consensus       890 V~~l~~s~dg~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~-~~d~~i~vwd~~  966 (1093)
                      |++++|+|++. +|++++.|++|++||+.+++....  +.. ..+.   ..+.+++|+|+ +++|++ +.|++|++||+.
T Consensus       172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~  245 (344)
T 4gqb_B          172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTK  245 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred             eEEEEecCCCCCceeeeccccccccccccccceeee--eec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence            99999999984 789999999999999998663321  111 1111   25889999995 466777 578999999999


Q ss_pred             CcceeeeeecCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCC
Q 001352          967 ELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1045 (1093)
Q Consensus       967 ~~~~~~~~~~~h~~~v~~~~fs~dg-~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1045 (1093)
                      +++++.. +.+|...|.+++|+||| ++|++|+.||+|+|||+.++++.. +.        .|.+.|.  +++|+|++..
T Consensus       246 ~~~~~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--------~H~~~V~--~v~~sp~~~~  313 (344)
T 4gqb_B          246 STSCVLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--------AHRDFVR--DATWSPLNHS  313 (344)
T ss_dssp             C--CCEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--------CCSSCEE--EEEECSSSTT
T ss_pred             CCcEEEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--------CCCCCEE--EEEEeCCCCe
Confidence            9999887 56899999999999998 579999999999999999987653 22        2456666  6789996556


Q ss_pred             EEEEEeCCCcEEEEecCCC
Q 001352         1046 QFAVGLTNGEVYVIEPNEP 1064 (1093)
Q Consensus      1046 ~l~~~~~dg~v~~w~~~~~ 1064 (1093)
                      +|++++.||+|++|+++..
T Consensus       314 llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          314 LLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EEEEEETTSCEEEEECCC-
T ss_pred             EEEEEcCCCeEEEEECCCC
Confidence            7889999999999999653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.4e-36  Score=339.09  Aligned_cols=287  Identities=15%  Similarity=0.172  Sum_probs=260.7

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +.+|...|.+++|+||+++||+|+.|++|+|||..+++...   .+..|...|.+++|+|+|.  ++++|+.|+.+++|+
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP  134 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence            77899999999999999999999999999999998876544   5678999999999999999  899999999999999


Q ss_pred             CCCC------ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc--CCCE
Q 001352          473 AVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRR  544 (1093)
Q Consensus       473 ~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~--d~~~  544 (1093)
                      +...      .....+.+|...|.+++|++  ++..|++++.||+|++||+++++....+..|...|.+++++|  ++++
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~  212 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT  212 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence            8654      34567788999999999965  557999999999999999999999999999999999999987  5789


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCC
Q 001352          545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  624 (1093)
Q Consensus       545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  624 (1093)
                      +++++.    ++.|++||+++++.+..+.+|.   ..|.+++|+|+++++++++.|++|++||+.+++.+..+..+....
T Consensus       213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~  285 (354)
T 2pbi_B          213 FVSGGC----DKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF  285 (354)
T ss_dssp             EEEEET----TSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred             EEEEeC----CCeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence            999986    6679999999999999998887   899999999999999999999999999999998887776555445


Q ss_pred             CCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCcccee
Q 001352          625 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  704 (1093)
Q Consensus       625 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  704 (1093)
                      .+.+++|+|+++++++++.|+.|++||+.++..+..+.+|...|.+++|+                      |+++++++
T Consensus       286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s----------------------pdg~~l~s  343 (354)
T 2pbi_B          286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS----------------------PDGTAFCS  343 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC----------------------TTSSCEEE
T ss_pred             ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC----------------------CCCCEEEE
Confidence            67899999999999999999999999999999999999999999999996                      78999999


Q ss_pred             ecccccceecc
Q 001352          705 VEAENKSEVEK  715 (1093)
Q Consensus       705 ~~~d~~i~~w~  715 (1093)
                      ++.|+++++|+
T Consensus       344 gs~D~~v~vW~  354 (354)
T 2pbi_B          344 GSWDHTLRVWA  354 (354)
T ss_dssp             EETTSEEEEEC
T ss_pred             EcCCCCEEecC
Confidence            99999999996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-36  Score=351.47  Aligned_cols=327  Identities=16%  Similarity=0.227  Sum_probs=268.1

Q ss_pred             CCCCCeEEEEECCCCC-EEEEEEcCCEEEEEEc----cCCCccc---ceEEecc----------ccccEEEEEeeCCCCc
Q 001352          395 DPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAY----HGGSDAR---QQLEIDA----------HVGNVNDLAFSAPCKQ  456 (1093)
Q Consensus       395 ~h~~~V~~v~~s~dg~-~las~~~d~~i~iwd~----~~~~~~~---~~~~~~~----------h~~~v~~~~~s~d~~~  456 (1093)
                      .|.+.|.+++|+|+|+ +||+|+.|+.|++||+    .+++.+.   ....+..          |.+.|++++|+|+++ 
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-  121 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN-  121 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS-
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC-
Confidence            4779999999999999 9999999999999999    8876200   1112222          688999999999999 


Q ss_pred             EEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCc----
Q 001352          457 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG----  532 (1093)
Q Consensus       457 l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----  532 (1093)
                       +|++++.||.|++|| .+++.+..+.+|...|.+++|++  ++.+|++++.||.|++||+.+......+..+...    
T Consensus       122 -~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (425)
T 1r5m_A          122 -SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI  197 (425)
T ss_dssp             -EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred             -EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence             899999999999999 88899999999999999999965  6679999999999999999998888888777666    


Q ss_pred             -----------eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC
Q 001352          533 -----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH  601 (1093)
Q Consensus       533 -----------v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg  601 (1093)
                                 +.+++|+|++. +++++.    ++.|++||+.+++.+..+..|.   ..|.+++|+|+++++++++.||
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~  269 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHH---GPISVLEFNDTNKLLLSASDDG  269 (425)
T ss_dssp             --------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCS---SCEEEEEEETTTTEEEEEETTS
T ss_pred             eeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCC---CceEEEEECCCCCEEEEEcCCC
Confidence                       89999999866 555554    6679999999988888877766   7788888888888888888888


Q ss_pred             cEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceee
Q 001352          602 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG  681 (1093)
Q Consensus       602 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  681 (1093)
                      .|++||+.+++.+..+.                                                               
T Consensus       270 ~i~i~d~~~~~~~~~~~---------------------------------------------------------------  286 (425)
T 1r5m_A          270 TLRIWHGGNGNSQNCFY---------------------------------------------------------------  286 (425)
T ss_dssp             CEEEECSSSBSCSEEEC---------------------------------------------------------------
T ss_pred             EEEEEECCCCccceEec---------------------------------------------------------------
Confidence            88888766542111110                                                               


Q ss_pred             eeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEE
Q 001352          682 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM  761 (1093)
Q Consensus       682 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~v  761 (1093)
                                                                                                      
T Consensus       287 --------------------------------------------------------------------------------  286 (425)
T 1r5m_A          287 --------------------------------------------------------------------------------  286 (425)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEE
Q 001352          762 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI  840 (1093)
Q Consensus       762 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~  840 (1093)
                                                             +|...+.+++|+|++ ++++++ ++.|++||+.+++.+..+
T Consensus       287 ---------------------------------------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~  326 (425)
T 1r5m_A          287 ---------------------------------------GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS  326 (425)
T ss_dssp             ---------------------------------------CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ---------------------------------------CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec
Confidence                                                   144556677777777 666665 688888888888888888


Q ss_pred             CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc--------------------eeeecccccC--CeEEEEEeCC
Q 001352          841 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------VISKLEGHSK--RVTGLVFSDA  898 (1093)
Q Consensus       841 ~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~~s~d  898 (1093)
                      ..|...+.+++|+| ++++|++++.||.|++||+.+++                    .+..+.+|..  .|++++|+|+
T Consensus       327 ~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  405 (425)
T 1r5m_A          327 IVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA  405 (425)
T ss_dssp             ECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT
T ss_pred             ccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC
Confidence            88999999999999 89999999999999999999988                    8899999976  9999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCC
Q 001352          899 LNILVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       899 g~~l~s~s~dg~i~iwd~~~  918 (1093)
                      +++|++++.||.|++|++.+
T Consensus       406 ~~~l~~~~~dg~i~iw~~~g  425 (425)
T 1r5m_A          406 GNKISVAYSLQEGSVVAIPG  425 (425)
T ss_dssp             SSEEEEEESSSCCEEEECCC
T ss_pred             CceEEEEecCceEEEEeecC
Confidence            99999999999999999863

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-37  Score=353.44  Aligned_cols=340  Identities=13%  Similarity=0.176  Sum_probs=281.0

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEec----CCCceeEEeeeeeeecccccceee-eeeecCCCCCeEEEEECC
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV----NSGQKLFIRNFKVWDIGACSMLFK-TALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~v~~s~  407 (1093)
                      .|.+.|++++|+|+|+.+||+|+.||.|++||+    .+++.+...... ..+   ..++. .....+|...|.+++|+|
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~v~~~~~s~  118 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTII-AEL---RHPFALSASSGKTTNQVTCLAWSH  118 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEE-EEE---ECCCCCC------CBCEEEEEECT
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccc-ccc---cccccccccccCCCCceEEEEEcC
Confidence            466899999999999834899999999999999    888732110000 000   00000 001223788999999999


Q ss_pred             CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC
Q 001352          408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  487 (1093)
Q Consensus       408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~  487 (1093)
                      ++++|++++.|+.|++|| .+++.+   ..+.+|...|.+++|+|+++  +|++++.|+.|++||+.+++.+..+..+..
T Consensus       119 ~~~~l~~~~~dg~i~i~~-~~~~~~---~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  192 (425)
T 1r5m_A          119 DGNSIVTGVENGELRLWN-KTGALL---NVLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFELKET  192 (425)
T ss_dssp             TSSEEEEEETTSCEEEEE-TTSCEE---EEECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred             CCCEEEEEeCCCeEEEEe-CCCCee---eeccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence            999999999999999999 444433   36788999999999999999  899999999999999999999999988877


Q ss_pred             C---------------eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          488 P---------------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       488 ~---------------v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      .               +.+++|++.   ..+++++.+|.|++||+........+..+...+.+++|+|+++++++++.  
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  267 (425)
T 1r5m_A          193 GGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD--  267 (425)
T ss_dssp             -------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET--
T ss_pred             CccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC--
Confidence            7               888888754   36999999999999999999888889899999999999999999999986  


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  632 (1093)
                        ++.|++||+.+++.+..+.+|.   ..+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.  ..+.+++|+
T Consensus       268 --d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~s  339 (425)
T 1r5m_A          268 --DGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG--VPIFAGRIS  339 (425)
T ss_dssp             --TSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT--CCEEEEEEC
T ss_pred             --CCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC--ccEEEEEEc
Confidence              6679999999999999988877   899999999999 99999999999999999999998888654  468999999


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCCc--------------------eeeecccccc--cceeeeecCCCceeeeeccCCceE
Q 001352          633 KNGTLLAVIANENRIKILETPESN--------------------SVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSVS  690 (1093)
Q Consensus       633 ~~~~~l~~~~~dg~i~iw~~~~~~--------------------~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~  690 (1093)
                      |++++|++++.||.|++|++.+..                    .+..+..+..  .+.+++|+                
T Consensus       340 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----------------  403 (425)
T 1r5m_A          340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN----------------  403 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC----------------
T ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc----------------
Confidence            999999999999999999998877                    7777888766  88888886                


Q ss_pred             ecCCCCCCCccceeecccccceeccee
Q 001352          691 VNEDPKEDVKPEISVEAENKSEVEKPL  717 (1093)
Q Consensus       691 ~~~~~s~d~~~l~s~~~d~~i~~w~~~  717 (1093)
                            |+++++++++.|+.+++|++.
T Consensus       404 ------~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          404 ------CAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ------TTSSEEEEEESSSCCEEEECC
T ss_pred             ------CCCceEEEEecCceEEEEeec
Confidence                  788899999999999999964

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=2.6e-35  Score=377.40  Aligned_cols=523  Identities=13%  Similarity=0.059  Sum_probs=378.0

Q ss_pred             CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352          334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  413 (1093)
Q Consensus       334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la  413 (1093)
                      +.+.+.+++|||+  + ||..+. +.|.+|++.+++...                    +.+|...|.+++|||||++||
T Consensus        13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la   68 (1045)
T 1k32_A           13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA   68 (1045)
T ss_dssp             CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred             ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence            4568999999974  4 455443 789999999887543                    667999999999999999999


Q ss_pred             EEEcC------CEEEEEEccCCCcccceEEeccccccE-------EEEEeeCCCCcEEEEEEcCC------CcEEEEECC
Q 001352          414 VAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDD------KTIKVWDAV  474 (1093)
Q Consensus       414 s~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v-------~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~  474 (1093)
                      +++.+      ..|++||+.+++.    ..+..|...+       ..++|+|||+  ++++++.+      ..|.+||+.
T Consensus        69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~  142 (1045)
T 1k32_A           69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND  142 (1045)
T ss_dssp             EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred             EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence            88654      3799999988752    2577888888       9999999998  67777754      458888887


Q ss_pred             CCceeEEeecCCCCeEEeeecccCCccEEEEEec------------CCeEEEEEcCCCCceEEecCCCCceEEEEEccCC
Q 001352          475 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV------------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG  542 (1093)
Q Consensus       475 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~  542 (1093)
                      +++... +..+.  ...++|++   | ++++++.            +...++|..........+..+...+.++.|+++ 
T Consensus       143 ~g~~~~-l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-  214 (1045)
T 1k32_A          143 GINFVP-LNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-  214 (1045)
T ss_dssp             GTEEEE-CCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred             CCCeEE-ecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence            776543 33332  33556754   5 7777753            345667754444555566788889999999988 


Q ss_pred             CEEEEEecCCCCceeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC
Q 001352          543 RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  621 (1093)
Q Consensus       543 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  621 (1093)
                      ..++++..    ++.+.+|.+.. +.....+..+.    .+...+|+|+|++++.+. ++.|++||+...+. ..+..+.
T Consensus       215 ~l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~----~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l-~~l~~~~  284 (1045)
T 1k32_A          215 RIYFITDI----DGFGQIYSTDLDGKDLRKHTSFT----DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKI-EKIEIGD  284 (1045)
T ss_dssp             EEEEEECT----TSSCEEEEEETTSCSCEECCCCC----SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCE-EECCCCC
T ss_pred             EEEEEEec----cCceEEEEEeCCCCcceEecCCC----CcceeeEcCCCCEEEEEe-CCEEEEecCCceEe-eeeccCc
Confidence            44444432    33455665432 33344444443    356679999999988874 89999999954443 3443321


Q ss_pred             ---------CCCCCceEEEe-cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEe
Q 001352          622 ---------GLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV  691 (1093)
Q Consensus       622 ---------~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  691 (1093)
                               +...+..++|+ |||+++++++ ++.+.+|+...+.... +.                             
T Consensus       285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~-----------------------------  333 (1045)
T 1k32_A          285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP-----------------------------  333 (1045)
T ss_dssp             CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----------------------------
T ss_pred             ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----------------------------
Confidence                     11247899999 9999999888 7889999877543221 10                             


Q ss_pred             cCCCCCCCccceeecccccceecceeeccCccccccccCcccccc-ceEEEEeecCCceEEEeeccceeE-EeeecCccc
Q 001352          692 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN-KISRLTYNNGGQAIFALASNGVHL-MWRWPRNDL  769 (1093)
Q Consensus       692 ~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~~~~~dg~v~-vw~~~~~~~  769 (1093)
                                                               .+.. .+..++|+ +|+.++.++.++.+. +|++..   
T Consensus       334 -----------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~---  368 (1045)
T 1k32_A          334 -----------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT---  368 (1045)
T ss_dssp             -----------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT---
T ss_pred             -----------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC---
Confidence                                                     0223 57788899 999888888776666 666432   


Q ss_pred             CcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeE
Q 001352          770 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTAT  848 (1093)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~  848 (1093)
                                         +. ...  +.  ++...+..++|||||++|++++ ++.|++||+.+++....+..|...+.
T Consensus       369 -------------------~~-~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~  424 (1045)
T 1k32_A          369 -------------------GK-AEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT  424 (1045)
T ss_dssp             -------------------CC-EEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred             -------------------CC-ceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence                               22 111  11  2677899999999999999988 58999999999998888878889999


Q ss_pred             EEEEcCCCCCEEEEEeCCC----------eEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352          849 SLAFNPHDNNVIAIGMDDS----------TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       849 ~l~~s~~d~~~lasg~~dg----------~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~  918 (1093)
                      +++||| |+++|++++.++          .|++||+.+++ +..+..|...+..++|+|||++|++++.++...+|+...
T Consensus       425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence            999999 899998887654          99999999887 677888888899999999999999999988888887653


Q ss_pred             Cceeee-----eeeec-----------------------CCCc-------ccCCCCceEEEEccCCCEEEE---------
Q 001352          919 WGIQTC-----RSLQT-----------------------PDGV-------MTLAPSETHIQFHKDQTRFLL---------  954 (1093)
Q Consensus       919 ~~~~~~-----~~~~~-----------------------~~~~-------~~~~~~v~~~~~s~dg~~l~~---------  954 (1093)
                      ......     ..+..                       ..+.       ......+..++|+|||+++++         
T Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~  582 (1045)
T 1k32_A          503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA  582 (1045)
T ss_dssp             SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred             cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence            321000     00000                       0000       001135788999999987875         


Q ss_pred             ---E--eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001352          955 ---V--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1012 (1093)
Q Consensus       955 ---~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~ 1012 (1093)
                         +  ....+.+||+.+++.... .    ..+.+++|||||++|++++.+ .|++||+.++.
T Consensus       583 ~~~~~~~~~~l~~~d~~~~~~~~l-~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          583 YYQGAPEKGVLLKYDVKTRKVTEV-K----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             HHHCCCCCEEEEEEETTTCCEEEE-E----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred             cccccCCCceEEEEECCCCcEEEe-e----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence               1  234789999988875432 2    468899999999999998866 89999998887

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-36  Score=337.78  Aligned_cols=298  Identities=17%  Similarity=0.288  Sum_probs=241.8

Q ss_pred             HhhccCCCCceeeee-----cC-CCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEE
Q 001352          329 QTLIEGSSSPMSMDF-----HP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  402 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~-----sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  402 (1093)
                      .+|.||++.|++++|     +| |++ +|++|+.|++|+|||+.+++....            .......+.+|...|.+
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~~V~~   81 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNHFVSD   81 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSSCEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCCceEE
Confidence            568899999999999     77 887 699999999999999986543210            00011237899999999


Q ss_pred             EEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe
Q 001352          403 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  482 (1093)
Q Consensus       403 v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~  482 (1093)
                      ++|+|++.+|++|+.|++|++||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|++|++||+. +......
T Consensus        82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~-~~~~~~~  155 (343)
T 2xzm_R           82 LALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNIL-GECKFSS  155 (343)
T ss_dssp             EEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESS-SCEEEEC
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEecc-CCceeee
Confidence            9999999999999999999999999987554   6789999999999999999  89999999999999987 4444444


Q ss_pred             e---cCCCCeEEeeecccCC--------ccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001352          483 E---GHGAPVYSLCPHAKEN--------IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  551 (1093)
Q Consensus       483 ~---~h~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~  551 (1093)
                      .   +|...|.+++|++...        +.++++++.||.|++||. .......+..|...|.+++|+|+|++|++++. 
T Consensus       156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~-  233 (343)
T 2xzm_R          156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK-  233 (343)
T ss_dssp             CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred             ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC-
Confidence            3   7889999999976532        268999999999999994 44556678889999999999999999999986 


Q ss_pred             CCCceeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--EEecC--------
Q 001352          552 KEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG--------  620 (1093)
Q Consensus       552 ~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~--------  620 (1093)
                         ++.|++||+.+ ......+. +.   ..|.+++|+|++.+++ ++.|+.|++||+.+++...  .+...        
T Consensus       234 ---dg~v~iwd~~~~~~~~~~~~-~~---~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~  305 (343)
T 2xzm_R          234 ---DKKLLIWDILNLTYPQREFD-AG---STINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQ  305 (343)
T ss_dssp             ---TCEEEEEESSCCSSCSEEEE-CS---SCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTB
T ss_pred             ---CCeEEEEECCCCcccceeec-CC---CcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhh
Confidence               77899999954 33444332 22   5699999999987765 4567889999998876544  33211        


Q ss_pred             -CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352          621 -GGLPENPRICFNKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       621 -~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                       ++...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus       306 ~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          306 KGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             CCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             cCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence             33456889999999999999999999999997643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.3e-36  Score=329.92  Aligned_cols=268  Identities=19%  Similarity=0.254  Sum_probs=241.2

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +.+|.+.|.+++|+||+++|++++.||+|++||+.++..++   .+.+|..+|.+++|+|+++  +|++|+.|++|++||
T Consensus         9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN   83 (304)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence            77899999999999999999999999999999999986554   6778999999999999999  899999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEcc-CCCEEEEEec
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSA-NGRRLFSCGT  550 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~-d~~~l~~~~~  550 (1093)
                      +.+++++..+.+|...|.+++|+|  ++.+|++++.||+|++||+++... ...+..|...|.+++|+| ++..+++++.
T Consensus        84 ~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence            999999999999999999999965  567999999999999999987744 457788999999999999 6789999986


Q ss_pred             CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352          551 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  628 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  628 (1093)
                          ++.|++||+.++.....+..+.  ...+..+.|+|  ++.++++++.|++|++||+.+++++..+..|.  ..|.+
T Consensus       162 ----D~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~  233 (304)
T 2ynn_A          162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF  233 (304)
T ss_dssp             ----TSEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred             ----CCeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEE
Confidence                7789999998887766665433  36788899986  67899999999999999999999999998764  46899


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecC
Q 001352          629 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNP  675 (1093)
Q Consensus       629 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~  675 (1093)
                      ++|+|++++|++++.||+|++||..+.+....+..+...+.++++.|
T Consensus       234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~  280 (304)
T 2ynn_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP  280 (304)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence            99999999999999999999999999999999999999999999874

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.1e-37  Score=348.46  Aligned_cols=290  Identities=15%  Similarity=0.167  Sum_probs=255.8

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +.+|.+.|.+++|+|++++|++|+.|++|+|||+.+++...   .+.+|...|.+++|+|+|+  ++++|+.|+.|++||
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~  136 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN  136 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence            78999999999999999999999999999999999886544   6789999999999999999  899999999999999


Q ss_pred             CCCCc-------eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-----cCCCCceEEEEEcc
Q 001352          473 AVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYSA  540 (1093)
Q Consensus       473 ~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~s~  540 (1093)
                      +.+..       ....+.+|.+.|.++.|.+.. +..|++++.|++|++||+.++.....+     ..|...+.+++|++
T Consensus       137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             CCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence            87542       345678999999999997653 357999999999999999998887766     56778899999977


Q ss_pred             -CCCEEEEEecCCCCceeEEEEeCC-CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001352          541 -NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  618 (1093)
Q Consensus       541 -d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  618 (1093)
                       +++++++++.    ++.|++||++ ++..+..+.+|.   ..|.+++|+|++++|++|+.||+|++||+.+++.+..+.
T Consensus       216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  288 (380)
T 3iz6_a          216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHE---GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN  288 (380)
T ss_dssp             SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCS---SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred             CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcC---CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence             8899999986    6679999998 557788888887   899999999999999999999999999999999988876


Q ss_pred             cCCC-----CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeec----ccccccceeeeecCCCceeeeeccCCce
Q 001352          619 AGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA----GVLSDNLRKLSVNPISTVTGAGIANGSV  689 (1093)
Q Consensus       619 ~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~  689 (1093)
                      .+..     ...+.+++|+|+|+++++|+.||.|++||...++.+..+    .+|...|.+++|+               
T Consensus       289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s---------------  353 (380)
T 3iz6_a          289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS---------------  353 (380)
T ss_dssp             CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC---------------
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC---------------
Confidence            5422     234889999999999999999999999999988777665    6788899999886               


Q ss_pred             EecCCCCCCCccceeecccccceeccee
Q 001352          690 SVNEDPKEDVKPEISVEAENKSEVEKPL  717 (1093)
Q Consensus       690 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~  717 (1093)
                             |+++++++++.|+++++|++.
T Consensus       354 -------~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          354 -------SDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             -------SSSSEEEEECTTSCEEEEECC
T ss_pred             -------CCCCEEEEeeCCCCEEEEecC
Confidence                   789999999999999999976

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-36  Score=334.48  Aligned_cols=294  Identities=17%  Similarity=0.189  Sum_probs=232.2

Q ss_pred             HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeee-cC-CCCCeEEEEE
Q 001352          328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RD-PGVSVNRVVW  405 (1093)
Q Consensus       328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~V~~v~~  405 (1093)
                      +++|.+|++.|++++|+|+   +||+|+.|++|+|||+.++.......                 + .+ |...|.+++|
T Consensus         7 ~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~-----------------~~~~~h~~~v~~v~~   66 (330)
T 2hes_X            7 IKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDV-----------------LDETAHKKAIRSVAW   66 (330)
T ss_dssp             EEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEE-----------------ECTTCCCSCEEEEEE
T ss_pred             ceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEE-----------------EecCCccCCEEEEEE
Confidence            3568899999999999998   59999999999999998764221100                 2 34 9999999999


Q ss_pred             CCCCCEEEEEEcCCEEEEEEccCCC----cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC----Cc
Q 001352          406 SPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GS  477 (1093)
Q Consensus       406 s~dg~~las~~~d~~i~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~----~~  477 (1093)
                      +|++++||+|+.|++|+|||+....    .......+.+|...|.+++|+|+++  +|++|+.|++|++||+..    .+
T Consensus        67 sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~  144 (330)
T 2hes_X           67 RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYE  144 (330)
T ss_dssp             CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCE
T ss_pred             CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeE
Confidence            9999999999999999999996432    1233446789999999999999999  899999999999999943    25


Q ss_pred             eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCceEEEEEccC--CCEEEEEecCCC
Q 001352          478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKE  553 (1093)
Q Consensus       478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~~~  553 (1093)
                      ++..+.+|...|.+++|+|  ++.+|++++.|++|++||....  .....+.+|...|.+++|+|+  +.+|++++.   
T Consensus       145 ~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---  219 (330)
T 2hes_X          145 CISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD---  219 (330)
T ss_dssp             EEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET---
T ss_pred             EEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC---
Confidence            6778899999999999965  5679999999999999998766  456678889999999999999  678998886   


Q ss_pred             CceeEEEEeCCCC--------eeeeeeec-ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEecCCC
Q 001352          554 GESFLVEWNESEG--------AIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGG  622 (1093)
Q Consensus       554 ~~~~i~iwd~~~~--------~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~  622 (1093)
                       ++.|++||+.++        .....+.+ |.   ..|.+++|++++ ++++++.||.|++||..+++.  .... ...+
T Consensus       220 -D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h  293 (330)
T 2hes_X          220 -DSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCH  293 (330)
T ss_dssp             -TSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTT
T ss_pred             -CCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cccc
Confidence             667999998765        33344443 44   889999999764 899999999999999988743  3222 1223


Q ss_pred             CC-CCceEEEec--CCCEEEEEECCCeEEEEEcCC
Q 001352          623 LP-ENPRICFNK--NGTLLAVIANENRIKILETPE  654 (1093)
Q Consensus       623 ~~-~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~  654 (1093)
                      .. .|.+++|+|  ++++|++++.||.|++|++..
T Consensus       294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            33 689999999  789999999999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.7e-36  Score=341.31  Aligned_cols=303  Identities=15%  Similarity=0.229  Sum_probs=247.0

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  412 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l  412 (1093)
                      +|.+.|.+++|||||++ ||+|+ +++++||++.+|+.+.......-.. .....+.......+...|.+++|+|||++|
T Consensus        62 ~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l  138 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSPDGKFL  138 (393)
T ss_dssp             ECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEE
T ss_pred             CCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEECCCCCEE
Confidence            69999999999999994 78876 6899999999998876422100000 000000000111344469999999999999


Q ss_pred             EEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEe
Q 001352          413 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  492 (1093)
Q Consensus       413 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  492 (1093)
                      |+|+.|++|++||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|++|++||+.++++...+. +...+.++
T Consensus       139 ~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~  212 (393)
T 1erj_A          139 ATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV  212 (393)
T ss_dssp             EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence            999999999999999886444   6889999999999999999  89999999999999999999988876 66779999


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352          493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  565 (1093)
Q Consensus       493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~  565 (1093)
                      ++++. ++.+|++++.||.|++||++++.....+       ..|...|.+++|+|+|++|++++.    ++.|++||+.+
T Consensus       213 ~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~wd~~~  287 (393)
T 1erj_A          213 AVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQN  287 (393)
T ss_dssp             EECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC--
T ss_pred             EEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEECCC
Confidence            98653 6689999999999999999988776655       467789999999999999999986    67799999876


Q ss_pred             C------------eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec
Q 001352          566 G------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  633 (1093)
Q Consensus       566 ~------------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  633 (1093)
                      .            .+...+.+|.   ..|.+++|+|++.+|++|+.||.|++||..+++.+..+..|.  ..|.+++|++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~--~~v~~v~~~~  362 (393)
T 1erj_A          288 ANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVISVAVAN  362 (393)
T ss_dssp             -------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS
T ss_pred             CCCcccccCCCCCcceEEEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC--CCEEEEEecC
Confidence            3            3445666766   889999999999999999999999999999999998888664  4689999876


Q ss_pred             ------CCCEEEEEECCCeEEEEEcCC
Q 001352          634 ------NGTLLAVIANENRIKILETPE  654 (1093)
Q Consensus       634 ------~~~~l~~~~~dg~i~iw~~~~  654 (1093)
                            ++++|++++.||+|++|+...
T Consensus       363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          363 GSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CcCcCCCCCEEEEECCCCcEEECcccc
Confidence                  688999999999999999764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-37  Score=354.52  Aligned_cols=353  Identities=13%  Similarity=0.188  Sum_probs=274.1

Q ss_pred             CCceeeeecCCCceEEEEE----------ccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352          336 SSPMSMDFHPVQHTLLLVG----------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  405 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  405 (1093)
                      ..|.+++|+|+|+.++|+|          +.|+.|+|||+.++.....                 .....|...|.+++|
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~~~~~   75 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFNDLDW   75 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEEEEEE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceEEEEE
Confidence            4799999999998679999          8899999999998763210                 002358899999999


Q ss_pred             CCCCCEEEEEEcCCEEEEEEccCCCc-ccceEEeccccccEEEEEeeCC-CCcEEEEEEcCCCcEEEEECCCCc------
Q 001352          406 SPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS------  477 (1093)
Q Consensus       406 s~dg~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~------  477 (1093)
                      +|++++|++++.|+.|++||+.+... ......+.+|...|.+++|+|+ ++  +|++++.|+.|++||+.+++      
T Consensus        76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~  153 (416)
T 2pm9_A           76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSNY  153 (416)
T ss_dssp             CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred             CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccccc
Confidence            99999999999999999999987211 1234467899999999999999 66  79999999999999999887      


Q ss_pred             eeEE---eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCceEEEEEccCC-CEEEE
Q 001352          478 RTYS---FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANG-RRLFS  547 (1093)
Q Consensus       478 ~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~d~-~~l~~  547 (1093)
                      ....   +..|...|.+++|++. ++.++++++.||.|++||+++.+....+..+      ...+.+++|+|++ .++++
T Consensus       154 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  232 (416)
T 2pm9_A          154 TPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT  232 (416)
T ss_dssp             CCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred             cccccccccCCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence            3333   4679999999999764 2579999999999999999998888888776      6789999999997 57777


Q ss_pred             EecCCCCceeEEEEeCCCC-eeeeeee-cccccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCC
Q 001352          548 CGTSKEGESFLVEWNESEG-AIKRTYQ-GLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  624 (1093)
Q Consensus       548 ~~~~~~~~~~i~iwd~~~~-~~~~~~~-~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  624 (1093)
                      ++.++ .++.|++||++++ ..+..+. +|.   ..|.+++|+| +++++++++.||.|++||+.+++.+..+..+.  .
T Consensus       233 ~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~--~  306 (416)
T 2pm9_A          233 ATGSD-NDPSILIWDLRNANTPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG--N  306 (416)
T ss_dssp             EECCS-SSCCCCEEETTSTTSCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS--S
T ss_pred             EECCC-CCceEEEEeCCCCCCCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC--C
Confidence            76532 1227999999986 6667776 666   8999999999 89999999999999999999999999988664  4


Q ss_pred             CCceEEEecCC-CEEEEEECCCeEEEEEcCCCceeeeccc--ccccceeeeecCCCceee---------------eeccC
Q 001352          625 ENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGV--LSDNLRKLSVNPISTVTG---------------AGIAN  686 (1093)
Q Consensus       625 ~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---------------~~~~~  686 (1093)
                      .|.+++|+|++ .++++++.|+.|++|++.+.........  .........+.+.....+               .....
T Consensus       307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (416)
T 2pm9_A          307 WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPS  386 (416)
T ss_dssp             CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCS
T ss_pred             ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCc
Confidence            68999999999 8999999999999999987654332211  000000011111100000               00111


Q ss_pred             CceEecCCCCCCCccceeecccccceecceee
Q 001352          687 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  718 (1093)
Q Consensus       687 ~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  718 (1093)
                      ..+.|    +|+|+++++++.|+.|++|++.+
T Consensus       387 ~~~~~----s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          387 PAAHW----AFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             CCCEE----ETTTEEECBCTTSSCBCCBCCCC
T ss_pred             cceEE----eeCCeEEEEeCCCCeEEEEEecc
Confidence            13344    78999999999999999999763

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.2e-36  Score=334.19  Aligned_cols=319  Identities=16%  Similarity=0.217  Sum_probs=232.0

Q ss_pred             ecCCCC-CeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEE
Q 001352          393 VRDPGV-SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  471 (1093)
Q Consensus       393 ~~~h~~-~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  471 (1093)
                      +.+|.. .|.+++|+|||++||+|+.|++|+|||+.++..........+|...|.+++|+|+++  +|++|+.|++|++|
T Consensus        11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~iw   88 (345)
T 3fm0_A           11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCIW   88 (345)
T ss_dssp             ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred             ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEEE
Confidence            678987 999999999999999999999999999998754333333468999999999999999  89999999999999


Q ss_pred             ECCCC--ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001352          472 DAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  549 (1093)
Q Consensus       472 d~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~  549 (1093)
                      |+.++  +++..+.+|...|.+++|+|  ++.+|++++.|+.|++||++.....                          
T Consensus        89 ~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~--------------------------  140 (345)
T 3fm0_A           89 KKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEY--------------------------  140 (345)
T ss_dssp             EECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCE--------------------------
T ss_pred             EccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCe--------------------------
Confidence            98877  45778889999999999865  5678999999999999987542110                          


Q ss_pred             cCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceE
Q 001352          550 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  629 (1093)
Q Consensus       550 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  629 (1093)
                                       ..+..+.+|.   ..|.+++|+|++++|++++.|++|++||..+++........++...|.++
T Consensus       141 -----------------~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l  200 (345)
T 3fm0_A          141 -----------------ECVSVLNSHT---QDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL  200 (345)
T ss_dssp             -----------------EEEEEECCCC---SCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred             -----------------EEEEEecCcC---CCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEE
Confidence                             1122334455   78999999999999999999999999999887654333333445679999


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccc
Q 001352          630 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  709 (1093)
Q Consensus       630 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  709 (1093)
                      +|+|+|++|++++.|++|++|+........       .+                                  .....  
T Consensus       201 ~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~-------~~----------------------------------~~~~~--  237 (345)
T 3fm0_A          201 AFDPSGQRLASCSDDRTVRIWRQYLPGNEQ-------GV----------------------------------ACSGS--  237 (345)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEEECTTCTT-------CC----------------------------------CCC----
T ss_pred             EECCCCCEEEEEeCCCeEEEeccccCCCCc-------cc----------------------------------eeecc--
Confidence            999999999999999999999864221000       00                                  00000  


Q ss_pred             cceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCC
Q 001352          710 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  789 (1093)
Q Consensus       710 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (1093)
                                                        .+....+....                                  +
T Consensus       238 ----------------------------------~~~~~~~~~~~----------------------------------~  249 (345)
T 3fm0_A          238 ----------------------------------DPSWKCICTLS----------------------------------G  249 (345)
T ss_dssp             -----------------------------------CEEEEEEEEC----------------------------------S
T ss_pred             ----------------------------------CCccceeEEec----------------------------------C
Confidence                                              00000000000                                  0


Q ss_pred             CceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCce---------eEEEECCCCCCeEEEEEcCCCCCE
Q 001352          790 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK---------TILTIMPPSPTATSLAFNPHDNNV  859 (1093)
Q Consensus       790 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~---------~~~~~~~~~~~i~~l~~s~~d~~~  859 (1093)
                                 .|...|.+++|+|++..|++++ |+.|++|+...+.         ......+|...|++++|+|++..+
T Consensus       250 -----------~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~  318 (345)
T 3fm0_A          250 -----------FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGL  318 (345)
T ss_dssp             -----------SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTE
T ss_pred             -----------CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceE
Confidence                       1555666777777777777666 5677777765432         112335799999999999943469


Q ss_pred             EEEEeCCCeEEEEEcCCcceeeec
Q 001352          860 IAIGMDDSTILIYNARSSEVISKL  883 (1093)
Q Consensus       860 lasg~~dg~i~iwd~~~~~~~~~l  883 (1093)
                      ||+|+.||+|++|++.+++.....
T Consensus       319 laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          319 LASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             EEEEETTSCEEEEEECC-------
T ss_pred             EEEcCCCCcEEEEEecCCCCcccc
Confidence            999999999999999987765544

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.3e-36  Score=332.94  Aligned_cols=324  Identities=13%  Similarity=0.156  Sum_probs=272.4

Q ss_pred             CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352          334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  413 (1093)
Q Consensus       334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la  413 (1093)
                      |.+.|.+++|||||++ ++++..++.+.+|+.........                   ..+|...|.+++|+|++++|+
T Consensus         8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~   67 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY   67 (337)
T ss_dssp             EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred             cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence            4568999999999994 77777667666665544322211                   447999999999999999999


Q ss_pred             EEEcCCEEEEEEccCCCcccceEEec--cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc--eeEEeecCCCCe
Q 001352          414 VAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV  489 (1093)
Q Consensus       414 s~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--~~~~~~~h~~~v  489 (1093)
                      +++ |+.|++||+.+++.......+.  +|...|.+++|+|+++  ++++++.|+.|++||+.+++  ....+..|...|
T Consensus        68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i  144 (337)
T 1gxr_A           68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC  144 (337)
T ss_dssp             EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred             EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence            998 9999999999887655554554  7999999999999999  89999999999999999887  667788899999


Q ss_pred             EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeee
Q 001352          490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  569 (1093)
Q Consensus       490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~  569 (1093)
                      .+++|++  ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++.    ++.|++||+.+++.+
T Consensus       145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~  218 (337)
T 1gxr_A          145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL  218 (337)
T ss_dssp             EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred             EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence            9999965  6679999999999999999999888888889999999999999999999986    677999999999888


Q ss_pred             eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001352          570 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  649 (1093)
Q Consensus       570 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  649 (1093)
                      ..+.. .   ..+.+++|+|+++++++++.+|.|++||+.+++... +.  .+...+.+++|+|+++++++++.||.|++
T Consensus       219 ~~~~~-~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  291 (337)
T 1gxr_A          219 QQHDF-T---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH--LHESCVLSLKFAYCGKWFVSTGKDNLLNA  291 (337)
T ss_dssp             EEEEC-S---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC--CCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             eeecC-C---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec--CCccceeEEEECCCCCEEEEecCCCcEEE
Confidence            77653 3   689999999999999999999999999999887653 33  33456999999999999999999999999


Q ss_pred             EEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcccccccc
Q 001352          650 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  729 (1093)
Q Consensus       650 w~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~  729 (1093)
                      |++.+++.+...                                                                    
T Consensus       292 ~~~~~~~~~~~~--------------------------------------------------------------------  303 (337)
T 1gxr_A          292 WRTPYGASIFQS--------------------------------------------------------------------  303 (337)
T ss_dssp             EETTTCCEEEEE--------------------------------------------------------------------
T ss_pred             EECCCCeEEEEe--------------------------------------------------------------------
Confidence            999876443211                                                                    


Q ss_pred             CccccccceEEEEeecCCceEEEeeccceeEEeee
Q 001352          730 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  764 (1093)
Q Consensus       730 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~  764 (1093)
                         .+...+.+++|+|+++.+++++.||.+++|++
T Consensus       304 ---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          304 ---KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ---cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence               14456788888888888888888888888875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.2e-35  Score=326.46  Aligned_cols=296  Identities=21%  Similarity=0.272  Sum_probs=252.1

Q ss_pred             ecCCCCCeEEEEECCCC-CEEEEEEcCCEEEEEEccCCCcc--cceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352          393 VRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  469 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg-~~las~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  469 (1093)
                      +.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+....  .....+.+|...|.+++|+|+++  ++++|+.|++|+
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v~   90 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLR   90 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred             EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEEE
Confidence            78999999999999965 89999999999999999754321  23446889999999999999999  899999999999


Q ss_pred             EEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC------CC
Q 001352          470 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN------GR  543 (1093)
Q Consensus       470 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d------~~  543 (1093)
                      +||+.+++.+..+.+|...|.+++|++  ++.+|++++.|++|++||++ ......+..|...+.++.++|.      +.
T Consensus        91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  167 (319)
T 3frx_A           91 LWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSV  167 (319)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CC
T ss_pred             EEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence            999999999999999999999999965  66799999999999999996 4566778889999999999985      44


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCC
Q 001352          544 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL  623 (1093)
Q Consensus       544 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  623 (1093)
                      .+++++.    ++.|++||+.+++....+.+|.   ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+   
T Consensus       168 ~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---  237 (319)
T 3frx_A          168 TIISAGN----DKMVKAWNLNQFQIEADFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---  237 (319)
T ss_dssp             EEEEEET----TSCEEEEETTTTEEEEEECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---
T ss_pred             EEEEEeC----CCEEEEEECCcchhheeecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---
Confidence            7888876    6679999999999999998887   89999999999999999999999999999999999888764   


Q ss_pred             CCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccce
Q 001352          624 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI  703 (1093)
Q Consensus       624 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~  703 (1093)
                      ..+.+++|+|++.++++++.+ .+++|++.....+..+..+...                                    
T Consensus       238 ~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~------------------------------------  280 (319)
T 3frx_A          238 DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG------------------------------------  280 (319)
T ss_dssp             SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT------------------------------------
T ss_pred             CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc------------------------------------
Confidence            358999999999999988865 5999998865444333211000                                    


Q ss_pred             eecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecC
Q 001352          704 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR  766 (1093)
Q Consensus       704 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~  766 (1093)
                                                ....+...+.+++|+|+|++|++++.||.|++|++..
T Consensus       281 --------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          281 --------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             --------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             --------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence                                      0012456788999999999999999999999998753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1e-35  Score=331.64  Aligned_cols=300  Identities=18%  Similarity=0.260  Sum_probs=257.9

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      .+|+||++.|++++|+|++..+||||+.||+|+|||+.+++.....              ....+.+|...|.+++|+||
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~s~d   97 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVISSD   97 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEECTT
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEECCC
Confidence            4789999999999999985447999999999999999887643221              11237789999999999999


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee-EEeecCCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGA  487 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~h~~  487 (1093)
                      |++|++++.|+.|++|+...+....   ....+...+..+.+++++.  .+++++.|+.+++||+...... ..+.+|..
T Consensus        98 g~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~  172 (340)
T 4aow_A           98 GQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESHSE  172 (340)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred             CCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccccC
Confidence            9999999999999999998875433   5567888999999999999  7999999999999998776543 44577999


Q ss_pred             CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352          488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  567 (1093)
Q Consensus       488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~  567 (1093)
                      .+..++|.+.+...++++++.|+.|++||+.+......+..+...|.+++|+|++++|++++.    ++.|++||+.+++
T Consensus       173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~~~~  248 (340)
T 4aow_A          173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLNEGK  248 (340)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETTTTE
T ss_pred             cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEeccCc
Confidence            999999988877789999999999999999999999999999999999999999999999986    7789999999999


Q ss_pred             eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec-------CCCCCCCceEEEecCCCEEEE
Q 001352          568 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-------GGGLPENPRICFNKNGTLLAV  640 (1093)
Q Consensus       568 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~v~~s~~~~~l~~  640 (1093)
                      .+..+..+    ..+.++.|+|++ .+++++.|+.|++||++++..+..+..       ..+...|.+++|+|+|++|++
T Consensus       249 ~~~~~~~~----~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s  323 (340)
T 4aow_A          249 HLYTLDGG----DIINALCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA  323 (340)
T ss_dssp             EEEEEECS----SCEEEEEECSSS-SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred             eeeeecCC----ceEEeeecCCCC-ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence            98888764    479999999986 466677899999999999888776643       234567899999999999999


Q ss_pred             EECCCeEEEEEcCCCc
Q 001352          641 IANENRIKILETPESN  656 (1093)
Q Consensus       641 ~~~dg~i~iw~~~~~~  656 (1093)
                      ++.||.|++|++.++.
T Consensus       324 gs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          324 GYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EETTSCEEEEEEEC--
T ss_pred             EeCCCEEEEEeCCCcC
Confidence            9999999999998763

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.5e-35  Score=323.76  Aligned_cols=290  Identities=20%  Similarity=0.289  Sum_probs=259.1

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +.+|...|.+++|+|++++||+|+.|+.|++|++.+++...   .+.+|...|.+++|+|+++  +|++++.|+.|++||
T Consensus        19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWD   93 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred             EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEEE
Confidence            78999999999999999999999999999999999886544   6789999999999999999  899999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      +.+++++..+.+|...|.+++|++  ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++.  
T Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--  169 (312)
T 4ery_A           94 VSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--  169 (312)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC--
Confidence            999999999999999999999965  5679999999999999999999988899999999999999999999999986  


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  632 (1093)
                        ++.|++||+.+++.+..+....  ...+..++|+|+++++++++.||.|++||+.+++.+..+..+..........++
T Consensus       170 --d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  245 (312)
T 4ery_A          170 --DGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS  245 (312)
T ss_dssp             --TSCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred             --CCcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence              6679999999998877765433  367999999999999999999999999999999999888766543333344454


Q ss_pred             -cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeec--ccc
Q 001352          633 -KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--AEN  709 (1093)
Q Consensus       633 -~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~d~  709 (1093)
                       +++.++++++.||.|++||+.+++.+..+.+|...+.+++++                      |+++.+++++  .|+
T Consensus       246 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----------------------p~~~~l~s~~~~~d~  303 (312)
T 4ery_A          246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH----------------------PTENIIASAALENDK  303 (312)
T ss_dssp             CSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------SSSSEEEEEECTTTC
T ss_pred             eCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec----------------------CcCCceEEEEccCCc
Confidence             678999999999999999999999999999999999999887                      6677788776  689


Q ss_pred             cceeccee
Q 001352          710 KSEVEKPL  717 (1093)
Q Consensus       710 ~i~~w~~~  717 (1093)
                      +|++|+.+
T Consensus       304 ~i~~W~~d  311 (312)
T 4ery_A          304 TIKLWKSD  311 (312)
T ss_dssp             CEEEEECC
T ss_pred             cEEEecCC
Confidence            99999854

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-35  Score=321.67  Aligned_cols=306  Identities=15%  Similarity=0.182  Sum_probs=232.3

Q ss_pred             CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEecCCCCCCCceEEEecCCCEEEEEE
Q 001352          565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIA  642 (1093)
Q Consensus       565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  642 (1093)
                      +.+.+..+.+|.   ..|.+++|+|+  +|++|+.|++|++||+.++  +....+....+...|.+++|+|++++|++++
T Consensus         3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s   77 (330)
T 2hes_X            3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS   77 (330)
T ss_dssp             CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred             ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence            455677788887   89999999987  8999999999999999875  3444553322456799999999999999999


Q ss_pred             CCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCc
Q 001352          643 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS  722 (1093)
Q Consensus       643 ~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~  722 (1093)
                      .|++|++|+........                                                               
T Consensus        78 ~D~~v~iw~~~~~~~~~---------------------------------------------------------------   94 (330)
T 2hes_X           78 FDSTVSIWAKEESADRT---------------------------------------------------------------   94 (330)
T ss_dssp             TTSCEEEEEC----------------------------------------------------------------------
T ss_pred             CCCcEEEEEcccCcCcc---------------------------------------------------------------
Confidence            99999999975320000                                                               


Q ss_pred             cccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCC
Q 001352          723 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS  802 (1093)
Q Consensus       723 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  802 (1093)
                                 .           ..+ .                                         ...  +  .+|
T Consensus        95 -----------~-----------~~~-~-----------------------------------------~~~--~--~~h  106 (330)
T 2hes_X           95 -----------F-----------EMD-L-----------------------------------------LAI--I--EGH  106 (330)
T ss_dssp             -----------C-----------CCE-E-----------------------------------------EEE--E--C--
T ss_pred             -----------c-----------cce-e-----------------------------------------EEE--E--cCC
Confidence                       0           000 0                                         000  0  037


Q ss_pred             CCCeeEEEEccCCCEEEEEe-CCeEEEEEccC----ceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001352          803 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  877 (1093)
Q Consensus       803 ~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~  877 (1093)
                      ...|.+++|+|+|++|++++ |++|++||+..    .+.+..+.+|...|.+++|+| ++.+|++|+.|++|++||..++
T Consensus       107 ~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             --CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCC
Confidence            77888889999988888887 68899999842    356778899999999999999 8999999999999999999876


Q ss_pred             --ceeeecccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCce---eeeeeeecCCC-cccCCCCceEEEEccCC
Q 001352          878 --EVISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGI---QTCRSLQTPDG-VMTLAPSETHIQFHKDQ  949 (1093)
Q Consensus       878 --~~~~~l~~h~~~V~~l~~s~d--g~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~-~~~~~~~v~~~~~s~dg  949 (1093)
                        +++..+.+|.+.|.+++|+|+  +.+|++++.|++|++||+..+..   ..........+ |.   ..|.+++|++++
T Consensus       186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~  262 (330)
T 2hes_X          186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG  262 (330)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS
T ss_pred             CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC
Confidence              678889999999999999998  77999999999999999975421   11122333333 44   379999999877


Q ss_pred             CEEEEEeCCeEEEEEcCCcc--eeeeeecCCCC-CEEEEEEcc--CCCEEEEEeCCCcEEEEEcCC
Q 001352          950 TRFLLVHETHLAIYEAEELT--CLKQWFPISSV-PISQATFSC--DCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus       950 ~~l~~~~d~~i~vwd~~~~~--~~~~~~~~h~~-~v~~~~fs~--dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
                      .++..+.|+.|++||..+++  .......+|.. .|.+++|+|  |+++|++++.||+|++|++..
T Consensus       263 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          263 LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            54444789999999998874  34444467876 999999999  789999999999999999865

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.4e-35  Score=333.36  Aligned_cols=293  Identities=17%  Similarity=0.214  Sum_probs=247.8

Q ss_pred             CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEecccc------------------ccEEEEEeeCCCCc
Q 001352          395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV------------------GNVNDLAFSAPCKQ  456 (1093)
Q Consensus       395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~------------------~~v~~~~~s~d~~~  456 (1093)
                      +|...|.+++|||||++||+|+ ++++++|++.+++.+.   .+.+|.                  ..|.+++|+|||+ 
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-  136 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-  136 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence            5999999999999999999986 6789999999987554   343332                  2499999999999 


Q ss_pred             EEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEE
Q 001352          457 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM  536 (1093)
Q Consensus       457 l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  536 (1093)
                       +|++|+.|++|++||+.+++.+..+.+|...|.+++|++  ++.+|++++.|++|++||+++++....+. +...+.++
T Consensus       137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~  212 (393)
T 1erj_A          137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV  212 (393)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred             -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence             899999999999999999999999999999999999965  66799999999999999999887766665 44578999


Q ss_pred             EEcc-CCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecc----cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001352          537 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  611 (1093)
Q Consensus       537 ~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~  611 (1093)
                      +|+| +++++++++.    ++.|++||+.++..+..+...    ..|...|.+++|+|+++++++++.||.|++||+.+.
T Consensus       213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            9999 8999999986    667999999999887776311    123388999999999999999999999999999764


Q ss_pred             c------------eEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCce
Q 001352          612 Q------------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  679 (1093)
Q Consensus       612 ~------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  679 (1093)
                      .            +...+..|  ...|.+++|+|++.+|++++.|+.|++||..++..+..+.+|...|.++++++....
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~  366 (393)
T 1erj_A          289 NNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL  366 (393)
T ss_dssp             ------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred             CCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence            3            33344444  446899999999999999999999999999999999999999999999999864332


Q ss_pred             eeeeccCCceEecCCCCCCCccceeecccccceecceee
Q 001352          680 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  718 (1093)
Q Consensus       680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  718 (1093)
                                      .|+++++++++.|+++++|++..
T Consensus       367 ----------------~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          367 ----------------GPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             ----------------CTTCEEEEEEETTSEEEEEEEEE
T ss_pred             ----------------CCCCCEEEEECCCCcEEECcccc
Confidence                            57899999999999999999763

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=8.7e-34  Score=363.28  Aligned_cols=529  Identities=10%  Similarity=0.022  Sum_probs=371.6

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC------CCcEE
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIK  469 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~  469 (1093)
                      +...+.+.+|||  ++||+++. +.|++|++.+++..    .+.+|...+.+++|||||+  .|++++.      +..|+
T Consensus        13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~   83 (1045)
T 1k32_A           13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY   83 (1045)
T ss_dssp             CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred             ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence            456789999995  58888876 68999999887532    4678999999999999999  5666543      24799


Q ss_pred             EEECCCCceeEEeecCCCCe-------EEeeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEE
Q 001352          470 VWDAVTGSRTYSFEGHGAPV-------YSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRM  536 (1093)
Q Consensus       470 vwd~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~  536 (1093)
                      +||+.+++ ...+..|...+       ..++|+|  ||+++++++.+      ..|.+|++..+.... +...  ....+
T Consensus        84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~--~~~~~  157 (1045)
T 1k32_A           84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLG--PATHI  157 (1045)
T ss_dssp             EEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSC--SCSEE
T ss_pred             EEECCCCC-eEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEE-ecCC--Cccee
Confidence            99988876 57788888888       8889965  55677777754      357777776554332 2222  23467


Q ss_pred             EEccCCCEEEEEecCCC--------CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001352          537 AYSANGRRLFSCGTSKE--------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  608 (1093)
Q Consensus       537 ~~s~d~~~l~~~~~~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~  608 (1093)
                      +|+| | ++++++...+        +.....+|....+.....+.+|.   ..+.++.|+++ ..+++++.++.+.+|.+
T Consensus       158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~---~~v~~~~~s~d-~l~~~~~~dg~~~l~~~  231 (1045)
T 1k32_A          158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGH-RIYFITDIDGFGQIYST  231 (1045)
T ss_dssp             EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred             eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC---CcccceEEeCC-EEEEEEeccCceEEEEE
Confidence            7999 8 7777642211        12224455332223344556666   88999999988 56667788899999986


Q ss_pred             CC-CceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCC
Q 001352          609 NK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  687 (1093)
Q Consensus       609 ~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  687 (1093)
                      .. +.....+..+.   .+...+|+|||+.++.+. ++.|++|+.... .+..+..+....                   
T Consensus       232 ~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~-------------------  287 (1045)
T 1k32_A          232 DLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLES-------------------  287 (1045)
T ss_dssp             ETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCB-------------------
T ss_pred             eCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccc-------------------
Confidence            53 44444554332   367789999999998885 789999998432 222221100000                   


Q ss_pred             ceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEee-cCCceEEEeeccceeEEeeecC
Q 001352          688 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPR  766 (1093)
Q Consensus       688 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~v~vw~~~~  766 (1093)
                                            ..                  ....+...+.+++|+ |+|+.+++++ ++.+.+|+...
T Consensus       288 ----------------------~~------------------~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~  326 (1045)
T 1k32_A          288 ----------------------PE------------------DRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG  326 (1045)
T ss_dssp             ----------------------CC------------------SEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred             ----------------------cc------------------cccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence                                  00                  000144567789999 9999888877 77888876543


Q ss_pred             cccCcCcccccccCCcccCCCCCCceeeccCCCCCCCC-CeeEEEEccCCCEEEEEeC-CeEE-EEEccCceeEEEECCC
Q 001352          767 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE-AVPCFALSKNDAYLFSASG-GVIS-LYIVMTFKTILTIMPP  843 (1093)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~s~dg~~la~~~d-g~i~-iwd~~~~~~~~~~~~~  843 (1093)
                      .                      . ...  +.  .+.. .+..++|+ ||+.++++++ +.+. +|++.+++.. .+..|
T Consensus       327 ~----------------------~-~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~  377 (1045)
T 1k32_A          327 T----------------------Y-VLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN  377 (1045)
T ss_dssp             S----------------------B-EEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC
T ss_pred             C----------------------c-eEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCC
Confidence            2                      1 111  11  2555 78899999 9999999885 6688 8898877654 44477


Q ss_pred             CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCC----------cEEE
Q 001352          844 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA----------QIFV  913 (1093)
Q Consensus       844 ~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg----------~i~i  913 (1093)
                      ...+..++|+| |+++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++          .|++
T Consensus       378 ~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l  456 (1045)
T 1k32_A          378 LGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  456 (1045)
T ss_dssp             CCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             ccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence            78999999999 999999999999999999999998887778999999999999999999887654          8999


Q ss_pred             EeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcce----------------------
Q 001352          914 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC----------------------  970 (1093)
Q Consensus       914 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~----------------------  970 (1093)
                      ||+.+++.      .....+..   .+..++|+|||++|+. +.++...+|+......                      
T Consensus       457 ~d~~~g~~------~~l~~~~~---~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (1045)
T 1k32_A          457 YDMEGRKI------FAATTENS---HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK  527 (1045)
T ss_dssp             EETTTTEE------EECSCSSS---BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred             EECCCCcE------EEeeCCCc---ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence            99998652      11222222   4778999999999988 4445555554322111                      


Q ss_pred             --------------------eeeeecCCCCCEEEEEEccCCCEEEE-------------EeCCCcEEEEEcCCCceEEEe
Q 001352          971 --------------------LKQWFPISSVPISQATFSCDCRMVFT-------------SFVDGTLSIHEASNLEVQCRI 1017 (1093)
Q Consensus       971 --------------------~~~~~~~h~~~v~~~~fs~dg~~l~t-------------~~~dg~v~vwd~~~~~~~~~~ 1017 (1093)
                                          .......|.+.+..++|+|||+++++             ...+..|.+||+.+++.....
T Consensus       528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~  607 (1045)
T 1k32_A          528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK  607 (1045)
T ss_dssp             CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE
T ss_pred             cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee
Confidence                                01112346678999999999987875             123457888999988754222


Q ss_pred             ccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCC
Q 001352         1018 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1065 (1093)
Q Consensus      1018 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1065 (1093)
                      .              ....++++| ||++|++++.+ .|++|++....
T Consensus       608 ~--------------~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          608 N--------------NLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             E--------------EEEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred             c--------------CcceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence            1              123578999 68999998877 89999996543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-36  Score=346.48  Aligned_cols=384  Identities=12%  Similarity=0.137  Sum_probs=288.2

Q ss_pred             eeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeee-cCCCCCeEEEEECC-CCCEEEEEEc
Q 001352          340 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RDPGVSVNRVVWSP-DGSLLGVAYS  417 (1093)
Q Consensus       340 ~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~s~-dg~~las~~~  417 (1093)
                      ...|+|+++. +++++      .|+ .+++.+..                   + .+|.+.|.+++|+| ++++||+|+.
T Consensus        32 ~~~f~~~~~~-~~~~~------~w~-~~g~~~~~-------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~   84 (437)
T 3gre_A           32 YKEFGPIQEI-VRSPN------MGN-LRGKLIAT-------------------LMENEPNSITSSAVSPGETPYLITGSD   84 (437)
T ss_dssp             CGGGCCCCCC-CCCCC------GGG-CCCCEEEE-------------------ECTTTTSCEEEEEEECSSSCEEEEEET
T ss_pred             hhhcCCcccc-ccccc------ccc-ccceEEee-------------------eccCCCCceEEEEECCCCCCEEEEecC
Confidence            3468999985 55543      377 44555543                   4 78999999999999 9999999999


Q ss_pred             CCEEEEEEccC---CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC---CCceeEEeecCCCCeEE
Q 001352          418 KHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYS  491 (1093)
Q Consensus       418 d~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~~~~~~h~~~v~~  491 (1093)
                      |++|+|||+.+   +...+....+ +|...|.+++|+|+++  +|++++.||+|++||+.   +++.+..+.+|  .+..
T Consensus        85 dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~  159 (437)
T 3gre_A           85 QGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRK  159 (437)
T ss_dssp             TSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEE
T ss_pred             CceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEE
Confidence            99999999987   5533333333 5999999999999999  89999999999999994   77877777766  6777


Q ss_pred             eeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE--EccCCCEEEEEecCCCCceeEEEEeCCCCeee
Q 001352          492 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIK  569 (1093)
Q Consensus       492 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~--~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~  569 (1093)
                      +.+.+.+                              +...+.++.  +++++.++++++.    ++.|++||+.+++.+
T Consensus       160 ~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~  205 (437)
T 3gre_A          160 INLKNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERL  205 (437)
T ss_dssp             EEGGGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEE
T ss_pred             EEccCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeee
Confidence            7765431                              122334444  6789999999986    677999999999999


Q ss_pred             eeeec--ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe----cCCCEEEEEEC
Q 001352          570 RTYQG--LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN----KNGTLLAVIAN  643 (1093)
Q Consensus       570 ~~~~~--~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~  643 (1093)
                      ..+.+  |.   ..|.+++|+|+++++++|+.||.|++||+++++.+..+..... ..|.+++|+    +++.+|++++.
T Consensus       206 ~~~~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~  281 (437)
T 3gre_A          206 QIIENSPRH---GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSS  281 (437)
T ss_dssp             EEEECCGGG---CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEEST
T ss_pred             EEEccCCCC---CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEEcC
Confidence            99988  55   8999999999999999999999999999999999988863322 368899665    56889999999


Q ss_pred             CCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcc
Q 001352          644 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE  723 (1093)
Q Consensus       644 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~  723 (1093)
                      ||.|++||+.+++.+..+.++...+..+.++|                                                
T Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------  313 (437)
T 3gre_A          282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP------------------------------------------------  313 (437)
T ss_dssp             TEEEEEEETTTTEEEEEEESSSSCCCGGGGSC------------------------------------------------
T ss_pred             CCcEEEEEcCCCcEEEEEEcCCCCCccceecc------------------------------------------------
Confidence            99999999999888777776655554443332                                                


Q ss_pred             ccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCC
Q 001352          724 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ  803 (1093)
Q Consensus       724 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  803 (1093)
                                            +++.+    .+.                                      .+.+..|.
T Consensus       314 ----------------------~~~~l----~~~--------------------------------------~~~~~~~~  329 (437)
T 3gre_A          314 ----------------------IEKGL----EEL--------------------------------------NFCGIRSL  329 (437)
T ss_dssp             ----------------------BCSSG----GGC--------------------------------------CCCCCCSG
T ss_pred             ----------------------ccccc----ccc--------------------------------------eecccccC
Confidence                                  22111    000                                      00001277


Q ss_pred             CCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCC---CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce
Q 001352          804 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  879 (1093)
Q Consensus       804 ~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~  879 (1093)
                      ..|.+++|+ ++++|++++ |+.|++||+.+++....+.+|.   .......+++ ...+++..        |+...+..
T Consensus       330 ~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~  399 (437)
T 3gre_A          330 NALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHS  399 (437)
T ss_dssp             GGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC------
T ss_pred             CceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccc
Confidence            889999999 788899988 7999999999999998888764   3455666776 55555443        33344455


Q ss_pred             eeecccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEe
Q 001352          880 ISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWD  915 (1093)
Q Consensus       880 ~~~l~~h~~~V~~l~~s~d--g~~l~s~s~dg~i~iwd  915 (1093)
                      ...+..|.+.|++++|+++  +.+|++++.||.|+||+
T Consensus       400 ~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          400 VDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            5666779999999999998  78999999999999995

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.3e-35  Score=341.60  Aligned_cols=346  Identities=13%  Similarity=0.120  Sum_probs=283.8

Q ss_pred             CeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce
Q 001352          399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  478 (1093)
Q Consensus       399 ~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~  478 (1093)
                      .+++++|+|+|++|++++.|+.|++||+.+++...   .+..| ..+....|+++++  +|++++.|+.|++||+.+++.
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~  131 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQ  131 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEE
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcce
Confidence            45579999999999999999999999999876554   23345 4455667899999  899999999999999999999


Q ss_pred             eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352          479 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  558 (1093)
Q Consensus       479 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i  558 (1093)
                      ...+.+|...|.+++|++  ++.+|++++.||.|++||+.+.+....+..|...|.+++|+|++++|++++.    ++.|
T Consensus       132 ~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~v  205 (420)
T 3vl1_A          132 REIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGTI  205 (420)
T ss_dssp             EEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSCE
T ss_pred             eeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCcE
Confidence            999899999999999965  5679999999999999999999999999999999999999999999999986    6679


Q ss_pred             EEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEE
Q 001352          559 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL  638 (1093)
Q Consensus       559 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  638 (1093)
                      ++||+.+++.+..+..+..+...+.++++.|.+...+                     ..  .+...+.+++|+|+++++
T Consensus       206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------~~--~~~~~v~~~~~s~~~~~l  262 (420)
T 3vl1_A          206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL---------------------HE--ISTSKKNNLEFGTYGKYV  262 (420)
T ss_dssp             EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC---------------------GG--GCCCCCCTTCSSCTTEEE
T ss_pred             EEeECCCCceeEEeecCCCCCCCccEEEEecCCccee---------------------ee--cccCcccceEEcCCCCEE
Confidence            9999999999999988766668899998877643220                     01  112457889999999999


Q ss_pred             EEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceee
Q 001352          639 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  718 (1093)
Q Consensus       639 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  718 (1093)
                      ++++.||.|++||+.++.......                                                        
T Consensus       263 ~~~~~dg~i~i~d~~~~~~~~~~~--------------------------------------------------------  286 (420)
T 3vl1_A          263 IAGHVSGVITVHNVFSKEQTIQLP--------------------------------------------------------  286 (420)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC--------------------------------------------------------
T ss_pred             EEEcCCCeEEEEECCCCceeEEcc--------------------------------------------------------
Confidence            999999999999987542211100                                                        


Q ss_pred             ccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCC
Q 001352          719 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT  798 (1093)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (1093)
                                                                                                      
T Consensus       287 --------------------------------------------------------------------------------  286 (420)
T 3vl1_A          287 --------------------------------------------------------------------------------  286 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCeeEEEEccCCC-EEEEEe-CCeEEEEEccCcee-EEEECC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001352          799 DSNSQEAVPCFALSKNDA-YLFSAS-GGVISLYIVMTFKT-ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA  874 (1093)
Q Consensus       799 ~~~~~~~v~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~  874 (1093)
                       .+|...+.+++|+|++. +|++++ ||.|++||+.+++. +..+.. |...+.++.+.  ++++|++++.||.|++|++
T Consensus       287 -~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          287 -SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             -CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEE
T ss_pred             -cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEec
Confidence             01566788888888888 888877 68899999887644 566665 56678888654  5789999999999999999


Q ss_pred             CCc---------ceeeecccccCCeEEEEEeCCCC---EEEEEeCCCcEEEEeCCC
Q 001352          875 RSS---------EVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       875 ~~~---------~~~~~l~~h~~~V~~l~~s~dg~---~l~s~s~dg~i~iwd~~~  918 (1093)
                      .+.         .....+.+|.+.|.+++|+|+++   .+++++.+|.+.+|+++.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          364 SDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             CCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             cCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            873         22234567889999999999999   788888999999999875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-35  Score=342.17  Aligned_cols=350  Identities=12%  Similarity=0.112  Sum_probs=282.6

Q ss_pred             CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352          336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  415 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~  415 (1093)
                      +.+++++|+|+|++ |++|+.||.|++||+.+++....                   +..| ..+...+|+|++++||+|
T Consensus        57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~  115 (420)
T 3vl1_A           57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILG  115 (420)
T ss_dssp             BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEE
T ss_pred             ccccceeeeecCCe-EEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEE
Confidence            35678999999996 89999999999999988765432                   3344 445566789999999999


Q ss_pred             EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeec
Q 001352          416 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  495 (1093)
Q Consensus       416 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  495 (1093)
                      +.|+.|++||+.+++...   .+.+|...|++++|+|+++  +|++++.|++|++||+.+++.+..+.+|...|.+++|+
T Consensus       116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  190 (420)
T 3vl1_A          116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII  190 (420)
T ss_dssp             ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred             ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence            999999999999875443   5679999999999999999  89999999999999999999999999999999999996


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeee
Q 001352          496 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  572 (1093)
Q Consensus       496 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  572 (1093)
                      +  ++.+|++++.||.|++||+++.+....+..   +...+.++++.+++...                         ..
T Consensus       191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------------------~~  243 (420)
T 3vl1_A          191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ-------------------------LH  243 (420)
T ss_dssp             T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS-------------------------CG
T ss_pred             C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce-------------------------ee
Confidence            5  668999999999999999999888777764   44567777776653221                         11


Q ss_pred             ecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC-EEEEEECCCeEEEEE
Q 001352          573 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILE  651 (1093)
Q Consensus       573 ~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~  651 (1093)
                      ..+   ...+.+++|+|+++++++++.||.|++||+.+++....+... +...+.+++|+|+++ ++++++.||.|++||
T Consensus       244 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd  319 (420)
T 3vl1_A          244 EIS---TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWD  319 (420)
T ss_dssp             GGC---CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             ecc---cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence            112   267888899999999999999999999999999888777542 335699999999999 999999999999999


Q ss_pred             cCCCce-eeeccc-ccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccc-cc
Q 001352          652 TPESNS-VDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS-LL  728 (1093)
Q Consensus       652 ~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~-~~  728 (1093)
                      +.++.. +..+.. +...+.++.+                       ++++++++++.|+.+++|++.......... ..
T Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~  376 (420)
T 3vl1_A          320 LRSPECPVGEFLINEGTPINNVYF-----------------------AAGALFVSSGFDTSIKLDIISDPESERPAIEFE  376 (420)
T ss_dssp             TTCTTSCSEEEEESTTSCEEEEEE-----------------------ETTEEEEEETTTEEEEEEEECCTTCCSCEECTT
T ss_pred             cCCCcCchhhhhccCCCCceEEEe-----------------------CCCCEEEEecCCccEEEEeccCCCCCccceecc
Confidence            998743 555555 4555655533                       467789999999999999987533221111 00


Q ss_pred             --cCccccccceEEEEeecCCc---eEEEeeccceeEEeeec
Q 001352          729 --LPSKVKANKISRLTYNNGGQ---AIFALASNGVHLMWRWP  765 (1093)
Q Consensus       729 --~~~~~~~~~i~~l~~s~~g~---~l~~~~~dg~v~vw~~~  765 (1093)
                        .....+...|.+++|+|+++   .+++++.+|.+.+|++.
T Consensus       377 ~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          377 TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             SCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred             CccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence              01134778899999999999   89999999999999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.4e-35  Score=324.78  Aligned_cols=321  Identities=16%  Similarity=0.261  Sum_probs=268.6

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  475 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  475 (1093)
                      |.++|.+++|+|||++++++..++.+.+|+.....  . .....+|...|++++|+|+++  ++++++ ||.|++||+.+
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~h~~~v~~~~~~~~~~--~l~~~~-dg~i~iw~~~~   81 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA--R-QINTLNHGEVVCAVTISNPTR--HVYTGG-KGCVKVWDISH   81 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE--E-EEEEECCSSCCCEEEECSSSS--EEEEEC-BSEEEEEETTS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc--c-cceeccCCCceEEEEEecCCc--EEEEcC-CCeEEEEECCC
Confidence            56789999999999999999877767666554432  2 223447999999999999999  788888 99999999988


Q ss_pred             Ccee---EEee--cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEccCCCEEEEE
Q 001352          476 GSRT---YSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSC  548 (1093)
Q Consensus       476 ~~~~---~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~  548 (1093)
                      ++..   ..+.  +|...|.+++|++  ++.+|++++.||.|++||+.+.+  ....+..+...+.+++|+|++++++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  159 (337)
T 1gxr_A           82 PGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC  159 (337)
T ss_dssp             TTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             CCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEE
Confidence            7643   3333  7999999999965  66899999999999999999877  455677788899999999999999999


Q ss_pred             ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352          549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  628 (1093)
Q Consensus       549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  628 (1093)
                      +.    ++.|++||+.+++.+..+.+|.   ..+.+++|+|+++++++++.||.|++||+.+++.+..+...   ..+.+
T Consensus       160 ~~----dg~v~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~v~~  229 (337)
T 1gxr_A          160 CS----DGNIAVWDLHNQTLVRQFQGHT---DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT---SQIFS  229 (337)
T ss_dssp             ET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS---SCEEE
T ss_pred             eC----CCcEEEEeCCCCceeeeeeccc---CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC---CceEE
Confidence            86    5669999999999999998877   89999999999999999999999999999999988887643   35889


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352          629 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  708 (1093)
Q Consensus       629 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  708 (1093)
                      ++|+|+++++++++.++.|++|++.+.....                                                 
T Consensus       230 ~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-------------------------------------------------  260 (337)
T 1gxr_A          230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-------------------------------------------------  260 (337)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTSSCEEE-------------------------------------------------
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCCeEE-------------------------------------------------
Confidence            9999999999999999999999987431100                                                 


Q ss_pred             ccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCC
Q 001352          709 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH  788 (1093)
Q Consensus       709 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1093)
                                                        +                                             
T Consensus       261 ----------------------------------~---------------------------------------------  261 (337)
T 1gxr_A          261 ----------------------------------L---------------------------------------------  261 (337)
T ss_dssp             ----------------------------------E---------------------------------------------
T ss_pred             ----------------------------------E---------------------------------------------
Confidence                                              0                                             


Q ss_pred             CCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001352          789 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS  867 (1093)
Q Consensus       789 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg  867 (1093)
                                 ..|...+.+++|+|++++|++++ +|.|++||+.+++.+... .|...+.+++|+| ++++|++++.||
T Consensus       262 -----------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg  328 (337)
T 1gxr_A          262 -----------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGDK  328 (337)
T ss_dssp             -----------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECT-TSCEEEEEETTS
T ss_pred             -----------cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECC-CCCEEEEecCCC
Confidence                       01566778888888888888887 688999998888777554 3788999999999 899999999999


Q ss_pred             eEEEEEcC
Q 001352          868 TILIYNAR  875 (1093)
Q Consensus       868 ~i~iwd~~  875 (1093)
                      .|++|++.
T Consensus       329 ~i~iw~~~  336 (337)
T 1gxr_A          329 KATVYEVI  336 (337)
T ss_dssp             CEEEEEEE
T ss_pred             eEEEEEEe
Confidence            99999963

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-36  Score=344.85  Aligned_cols=332  Identities=11%  Similarity=0.157  Sum_probs=273.2

Q ss_pred             ccccEEEEEeeCCCCcEEEEEE----------cCCCcEEEEECCCCc---eeEEeecCCCCeEEeeecccCCccEEEEEe
Q 001352          441 HVGNVNDLAFSAPCKQISVITC----------GDDKTIKVWDAVTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSIS  507 (1093)
Q Consensus       441 h~~~v~~~~~s~d~~~l~l~s~----------~~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~  507 (1093)
                      +...|.+++|+|+++. +++++          +.|+.|++||+.++.   .+..+ .|...|.+++|++  ++.+|++++
T Consensus        11 ~~~~v~~~~~sp~g~~-~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~   86 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIP-LLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSH--NNKIIAGAL   86 (416)
T ss_dssp             EEEESCBCCBCSSSSC-EEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECS--SSSCEEEEE
T ss_pred             hhhhcceEeeCCCCCC-EEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECC--CCCeEEEEc
Confidence            3346889999999875 68888          889999999999886   34444 5889999999955  668999999


Q ss_pred             cCCeEEEEEcCC----CCceEEecCCCCceEEEEEccC-CCEEEEEecCCCCceeEEEEeCCCCe------eeeeeeccc
Q 001352          508 VDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQ  576 (1093)
Q Consensus       508 ~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~  576 (1093)
                      .||.|++||+..    ......+..|...|.+++|+|+ ++++++++.    ++.|++||+.+++      ....+....
T Consensus        87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~  162 (416)
T 2pm9_A           87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN----NGEIFIWDMNKCTESPSNYTPLTPGQSM  162 (416)
T ss_dssp             SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS----SSCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred             cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC----CCeEEEEECCCCcccccccccccccccc
Confidence            999999999987    3467778889999999999998 889999876    6679999999887      333332122


Q ss_pred             ccCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEecCCC----CCCCceEEEecCC-CEEEEEECCC---eE
Q 001352          577 LQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNKNG-TLLAVIANEN---RI  647 (1093)
Q Consensus       577 ~~~~~v~~v~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~~~-~~l~~~~~dg---~i  647 (1093)
                      .+...|.+++|+|+ +..+++++.||.|++||+.+++.+..+..+..    ...+.+++|+|++ .++++++.|+   .|
T Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i  242 (416)
T 2pm9_A          163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI  242 (416)
T ss_dssp             CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred             CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence            23488999999999 78999999999999999999999988876531    3568999999987 6899999998   89


Q ss_pred             EEEEcCCCce-eeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccc
Q 001352          648 KILETPESNS-VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  726 (1093)
Q Consensus       648 ~iw~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~  726 (1093)
                      ++||+.+... ...                                                                  
T Consensus       243 ~~~d~~~~~~~~~~------------------------------------------------------------------  256 (416)
T 2pm9_A          243 LIWDLRNANTPLQT------------------------------------------------------------------  256 (416)
T ss_dssp             CEEETTSTTSCSBC------------------------------------------------------------------
T ss_pred             EEEeCCCCCCCcEE------------------------------------------------------------------
Confidence            9998774310 000                                                                  


Q ss_pred             cccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCe
Q 001352          727 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  806 (1093)
Q Consensus       727 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  806 (1093)
                                                                                            +. .+|...|
T Consensus       257 ----------------------------------------------------------------------~~-~~~~~~v  265 (416)
T 2pm9_A          257 ----------------------------------------------------------------------LN-QGHQKGI  265 (416)
T ss_dssp             ----------------------------------------------------------------------CC-SCCSSCE
T ss_pred             ----------------------------------------------------------------------ee-cCccCce
Confidence                                                                                  00 0266778


Q ss_pred             eEEEEcc-CCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCC-CEEEEEeCCCeEEEEEcCCcceeeec
Q 001352          807 PCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN-NVIAIGMDDSTILIYNARSSEVISKL  883 (1093)
Q Consensus       807 ~~l~~s~-dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~-~~lasg~~dg~i~iwd~~~~~~~~~l  883 (1093)
                      .+++|+| ++++|++++ |+.|++||+.+++.+..+..|...|.+++|+| ++ .+|++++.||.|++|++.+++.....
T Consensus       266 ~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~  344 (416)
T 2pm9_A          266 LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQNLTNTLDE  344 (416)
T ss_dssp             EEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC
T ss_pred             eEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC-CCCCEEEEEecCCcEEEEEccCCCCCccc
Confidence            8899998 888899887 79999999999999999999999999999999 66 89999999999999999876543322


Q ss_pred             cc-----------------------------------ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352          884 EG-----------------------------------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       884 ~~-----------------------------------h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~  918 (1093)
                      ..                                   |..++.+++|+|||++|++++.|+.|+||++.+
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          345 QETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             ----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             ccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence            11                                   677888999999999999999999999999986

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.5e-34  Score=318.80  Aligned_cols=288  Identities=20%  Similarity=0.224  Sum_probs=239.3

Q ss_pred             eecCCCCCeEEEEE-----CC-CCCEEEEEEcCCEEEEEEccCCCcc----cceEEeccccccEEEEEeeCCCCcEEEEE
Q 001352          392 LVRDPGVSVNRVVW-----SP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVIT  461 (1093)
Q Consensus       392 ~~~~h~~~V~~v~~-----s~-dg~~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s  461 (1093)
                      .+.+|.+.|.+++|     ++ |+++||+|+.|++|++||+.+++..    .....+.+|...|.+++|+|++.  ++++
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s   93 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS   93 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence            48899999999999     77 9999999999999999999865421    23346789999999999999999  8999


Q ss_pred             EcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEEE
Q 001352          462 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAY  538 (1093)
Q Consensus       462 ~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~  538 (1093)
                      ++.|++|++||+.+++.+..+.+|...|.+++|+|  ++.+|++++.|+.|++||+.. .......   .+...+.+++|
T Consensus        94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred             EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence            99999999999999999999999999999999965  667999999999999999973 3333332   56778999999


Q ss_pred             ccCC----------CEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001352          539 SANG----------RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  608 (1093)
Q Consensus       539 s~d~----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~  608 (1093)
                      +|++          .++++++.    ++.|++|| .++.....+.+|.   ..|.+++|+|++++|++|+.||.|++||+
T Consensus       171 ~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~---~~v~~~~~s~~g~~l~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          171 SPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHE---SNVNHLSISPNGKYIATGGKDKKLLIWDI  242 (343)
T ss_dssp             CCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred             ccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCcc---ccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            9987          68888876    67899999 4566777788877   89999999999999999999999999999


Q ss_pred             C-CCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceee--ecc-----------cccccceeeeec
Q 001352          609 N-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----------VLSDNLRKLSVN  674 (1093)
Q Consensus       609 ~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~-----------~~~~~i~~~~~~  674 (1093)
                      . .......+...   ..|.+++|+|++.+++++ .|+.+++|++.+.....  .+.           +|...+.+++|+
T Consensus       243 ~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  318 (343)
T 2xzm_R          243 LNLTYPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN  318 (343)
T ss_dssp             SCCSSCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred             CCCcccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence            4 44444554332   248999999999888765 57789999998765432  222           455566666665


Q ss_pred             CCCceeeeeccCCceEecCCCCCCCccceeecccccceecceee
Q 001352          675 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  718 (1093)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  718 (1093)
                                            |+++++++++.||.|++|++..
T Consensus       319 ----------------------p~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          319 ----------------------ALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             ----------------------SSSCCEEEEETTSEEEEEEEEE
T ss_pred             ----------------------CCCCeEEEecCCceEEEEEEEc
Confidence                                  7899999999999999999764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7e-35  Score=357.52  Aligned_cols=296  Identities=18%  Similarity=0.254  Sum_probs=250.4

Q ss_pred             hhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCC
Q 001352          330 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  409 (1093)
Q Consensus       330 ~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg  409 (1093)
                      .|.+|++.|++++|+|++..+|++|+.|++|+|||+.++.....              .....+.+|...|.+++|+|+|
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s~~g  442 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLSSDG  442 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEECTTS
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEECCCC
Confidence            46789999999999998755899999999999999987543210              0011277899999999999999


Q ss_pred             CEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe---ecCC
Q 001352          410 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---EGHG  486 (1093)
Q Consensus       410 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~---~~h~  486 (1093)
                      ++|++|+.|++|+|||+.++...+   .+.+|...|.+++|+|+++  .|++++.|++|++||..........   .+|.
T Consensus       443 ~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~  517 (694)
T 3dm0_A          443 QFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHR  517 (694)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCS
T ss_pred             CEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCC
Confidence            999999999999999999986554   6789999999999999999  7999999999999997655433322   4688


Q ss_pred             CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352          487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  566 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~  566 (1093)
                      ..|.+++|++......+++++.||+|++||+++......+..|...|.+++|+|++++|++++.    ++.|++||+.++
T Consensus       518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~  593 (694)
T 3dm0_A          518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEG  593 (694)
T ss_dssp             SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTT
T ss_pred             CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCC
Confidence            9999999987665578999999999999999999988899999999999999999999999986    667999999999


Q ss_pred             eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC-----------------CCCCceE
Q 001352          567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------------LPENPRI  629 (1093)
Q Consensus       567 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~v  629 (1093)
                      +.+..+..+    ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+..                 ...+.++
T Consensus       594 ~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  668 (694)
T 3dm0_A          594 KKLYSLEAN----SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSL  668 (694)
T ss_dssp             EEEECCBCS----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEE
T ss_pred             ceEEEecCC----CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeE
Confidence            988777653    4799999999987776665 56699999999998877753211                 1125689


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcC
Q 001352          630 CFNKNGTLLAVIANENRIKILETP  653 (1093)
Q Consensus       630 ~~s~~~~~l~~~~~dg~i~iw~~~  653 (1093)
                      +|+|+|++|++|+.||.|++|++.
T Consensus       669 ~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          669 NWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEcCCCCEEEEEcCCCeEEEEecc
Confidence            999999999999999999999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.7e-34  Score=330.14  Aligned_cols=326  Identities=16%  Similarity=0.228  Sum_probs=278.8

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      +.|.+|.+.|.. +++++|+ ++++|+.||+|++||+.+++.+..                   +.+|...|.+++|+  
T Consensus       112 ~~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~--  168 (445)
T 2ovr_B          112 KVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR--  168 (445)
T ss_dssp             EEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE--
T ss_pred             EEecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec--
Confidence            457899987643 3556787 589999999999999999988765                   77899999999997  


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  488 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  488 (1093)
                      +.+|++|+.|++|++||+.+++.+.   .+.+|...|.+++|++  +  .+++|+.||+|++||+.+++.+..+.+|...
T Consensus       169 ~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~--~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~  241 (445)
T 2ovr_B          169 DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGHVAA  241 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred             CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEecC--C--EEEEEeCCCEEEEEECCCCcEEEEEcCCccc
Confidence            6799999999999999999986554   6789999999999964  4  7999999999999999999999999999999


Q ss_pred             eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001352          489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  568 (1093)
Q Consensus       489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~  568 (1093)
                      |.++++    ++.++++++.||.|++||+++......+..+...+.+++|  ++.++++++.    ++.|++||+.+++.
T Consensus       242 v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~~~  311 (445)
T 2ovr_B          242 VRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETGNC  311 (445)
T ss_dssp             EEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTCCE
T ss_pred             EEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCCCE
Confidence            999988    5578999999999999999999888899999999999999  8899999986    66799999999999


Q ss_pred             eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-CCCCCceEEEecCCCEEEEEECCCeE
Q 001352          569 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANENRI  647 (1093)
Q Consensus       569 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i  647 (1093)
                      +..+.+|.   ..+.++.++  ++++++++.||.|++||+.+++.+..+..+. +...|.+++|+  ++++++++.||.|
T Consensus       312 ~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v  384 (445)
T 2ovr_B          312 IHTLTGHQ---SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTV  384 (445)
T ss_dssp             EEEECCCC---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEE
T ss_pred             EEEEcCCc---ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeE
Confidence            99998877   778887774  6799999999999999999999998887532 34568888885  6899999999999


Q ss_pred             EEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcccccc
Q 001352          648 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL  727 (1093)
Q Consensus       648 ~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~  727 (1093)
                      ++|++.+++.+..+...                                                               
T Consensus       385 ~iwd~~~~~~~~~~~~~---------------------------------------------------------------  401 (445)
T 2ovr_B          385 KLWDLKTGEFIRNLVTL---------------------------------------------------------------  401 (445)
T ss_dssp             EEEETTTCCEEEEEEEC---------------------------------------------------------------
T ss_pred             EEEECCCCceeeeeecc---------------------------------------------------------------
Confidence            99999987665443210                                                               


Q ss_pred             ccCccccccceEEEEeecCCceEEEeeccce----eEEeeecC
Q 001352          728 LLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR  766 (1093)
Q Consensus       728 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~----v~vw~~~~  766 (1093)
                        ....+.+.|.+++|+|++..+++++.||.    +.+||+..
T Consensus       402 --~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          402 --ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             --TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             --ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence              00125667889999999999999999987    88888764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.5e-34  Score=326.16  Aligned_cols=294  Identities=15%  Similarity=0.141  Sum_probs=246.1

Q ss_pred             HhhccCCCCceeeeecCCC-ceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          329 QTLIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg-~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      +.+.+|.+.|++++|+|+| + +||+|+.||.|+|||+.+++......                 ..+|...|.+++|+|
T Consensus        67 ~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------~~~h~~~v~~~~~~~  128 (383)
T 3ei3_B           67 RTASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQ-----------------GMGPGDAITGMKFNQ  128 (383)
T ss_dssp             EEECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEEC-----------------CCSTTCBEEEEEEET
T ss_pred             EeccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeee-----------------cCCcCCceeEEEeCC
Confidence            3567899999999999999 6 69999999999999999888765421                 347999999999999


Q ss_pred             -CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC
Q 001352          408 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  486 (1093)
Q Consensus       408 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~  486 (1093)
                       ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++  ++++++.|+.|++||+ +++.+..+.+|.
T Consensus       129 ~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~~~h~  204 (383)
T 3ei3_B          129 FNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKEKLHK  204 (383)
T ss_dssp             TEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEEECSS
T ss_pred             CCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEeccCC
Confidence             789999999999999999996 33333222334568899999999999  8999999999999998 688899999999


Q ss_pred             CCeEEeeecccCCcc-EEEEEecCCeEEEEEcCC----CCceEEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEE
Q 001352          487 APVYSLCPHAKENIH-FIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVE  560 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~i  560 (1093)
                      ..|.+++|++  ++. ++++++.||.|++||+++    ......+ .+...|.+++|+| ++++|++++.    ++.|++
T Consensus       205 ~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~i  277 (383)
T 3ei3_B          205 AKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRV  277 (383)
T ss_dssp             SCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEEE
T ss_pred             CcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEEE
Confidence            9999999965  455 899999999999999987    3344444 6888999999999 9999999986    677999


Q ss_pred             EeCCCCeeeeeeeccccc--------------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCC
Q 001352          561 WNESEGAIKRTYQGLQLQ--------------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  626 (1093)
Q Consensus       561 wd~~~~~~~~~~~~~~~~--------------~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  626 (1093)
                      ||+.+++....+.+|...              ...+..++|+|++++  +++.||.|++||+.+++.+..+..+.+...+
T Consensus       278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~  355 (383)
T 3ei3_B          278 YSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGII  355 (383)
T ss_dssp             EETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCC
T ss_pred             EECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceE
Confidence            999999888777765311              133445667777766  7789999999999999999999876555567


Q ss_pred             ceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352          627 PRICFNKNGTLLAVIANENRIKILETPE  654 (1093)
Q Consensus       627 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~  654 (1093)
                      ..++|+|++++|++++ |+.|++|++.+
T Consensus       356 ~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          356 SLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEEEEecCccEEEEec-CCcEEEEecCC
Confidence            7789999999999997 89999999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.2e-33  Score=329.73  Aligned_cols=301  Identities=18%  Similarity=0.237  Sum_probs=263.3

Q ss_pred             HhhccCCCCc-eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          329 QTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       329 ~~l~~h~~~V-~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      .+|.+|.+.| .++.|  +++ ++++|+.||+|++||+.+++.+..                   +.+|.+.|.+++|+|
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~~  172 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYAH  172 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEECS
T ss_pred             EEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEcC
Confidence            3578898886 56666  455 599999999999999999987765                   778999999999999


Q ss_pred             CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeC--CCCcEEEEEEcCCCcEEEEECCCCce-------
Q 001352          408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSR-------  478 (1093)
Q Consensus       408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~-------  478 (1093)
                      ++ +|++|+.||+|++||+.+++.+.   .+.+|...|.+++|++  ++.  ++++++.|++|++||+.++..       
T Consensus       173 ~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~  246 (464)
T 3v7d_B          173 GG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEE  246 (464)
T ss_dssp             TT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------
T ss_pred             CC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccccccc
Confidence            88 99999999999999999986544   6789999999999994  556  899999999999999988763       


Q ss_pred             ----------------eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC
Q 001352          479 ----------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG  542 (1093)
Q Consensus       479 ----------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~  542 (1093)
                                      +..+.+|...|.++..    ++.++++++.||.|++||+.+.+....+..+...|.+++|+|++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  322 (464)
T 3v7d_B          247 HDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER  322 (464)
T ss_dssp             CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred             CCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC
Confidence                            4567789999988843    55799999999999999999999999999999999999999999


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC
Q 001352          543 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG  622 (1093)
Q Consensus       543 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  622 (1093)
                      +++++++.    ++.|++||+.+++.+..+.+|.   ..|.++.|+  ++++++++.||.|++||+.++.........  
T Consensus       323 ~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~--  391 (464)
T 3v7d_B          323 KRCISASM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT--  391 (464)
T ss_dssp             TEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT--
T ss_pred             CEEEEEeC----CCcEEEEECCCCcEEEEEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC--
Confidence            99999986    6679999999999999999887   899999997  579999999999999999998877666532  


Q ss_pred             CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeee-cccccccceeeeec
Q 001352          623 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA-AGVLSDNLRKLSVN  674 (1093)
Q Consensus       623 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~  674 (1093)
                       ..+..++|+++++++++++ ||.|++||+.+++.+.. ...+...+.+++|+
T Consensus       392 -~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~  442 (464)
T 3v7d_B          392 -NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK  442 (464)
T ss_dssp             -TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred             -CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence             3477899999999999998 89999999999988875 66778888888885

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.4e-36  Score=346.05  Aligned_cols=335  Identities=10%  Similarity=0.066  Sum_probs=247.8

Q ss_pred             CCCCceeeeecCCC---------ceEEEE-------------------EccCCcEEEEecCCCceeEEeeeeeeeccccc
Q 001352          334 GSSSPMSMDFHPVQ---------HTLLLV-------------------GTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS  385 (1093)
Q Consensus       334 h~~~V~~~~~spdg---------~~llas-------------------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  385 (1093)
                      +.+.|++++|+|++         + +||+                   |+.|++|+|||+.+++.....           
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~-----------  199 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK-----------  199 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEEE-----------
T ss_pred             CCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE-----------
Confidence            56689999999986         4 3555                   456789999999887643210           


Q ss_pred             ceeeeeeecCCCCCeEEEEECCC------CCEEEEEEcCCEEEEEEccCCCcc--------cceEEeccccccEEEEEee
Q 001352          386 MLFKTALVRDPGVSVNRVVWSPD------GSLLGVAYSKHIVQLYAYHGGSDA--------RQQLEIDAHVGNVNDLAFS  451 (1093)
Q Consensus       386 ~~~~~~~~~~h~~~V~~v~~s~d------g~~las~~~d~~i~iwd~~~~~~~--------~~~~~~~~h~~~v~~~~~s  451 (1093)
                          ...+.+|.+.|.+++|+|+      +.+||+++.||+|++||+.++...        .....+.+|...|++++|+
T Consensus       200 ----~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s  275 (524)
T 2j04_B          200 ----VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL  275 (524)
T ss_dssp             ----EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES
T ss_pred             ----EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec
Confidence                0114568899999999997      579999999999999999877532        1233678999999999999


Q ss_pred             CCCCcEEEEEEcCCCcEEEEECCCCc-eeEEeecCCCCeEEeeecccCCc-cEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001352          452 APCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAP  529 (1093)
Q Consensus       452 ~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  529 (1093)
                      +++   .|++|+.||+|++||+.++. +...+.+|...|.++++...+++ .+|++++.||+|++||+++.+....+..+
T Consensus       276 ~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~  352 (524)
T 2j04_B          276 SPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR  352 (524)
T ss_dssp             SSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEE
T ss_pred             CCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccc
Confidence            864   69999999999999999874 45678999999999954335565 79999999999999999887765555444


Q ss_pred             C--CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001352          530 G--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD  607 (1093)
Q Consensus       530 ~--~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd  607 (1093)
                      .  ..+.+++|+|+++.+++++.    ++.|++||++++.++..+.+|.   ..|.+++|+|++++|++|+.||+|++||
T Consensus       353 ~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~~~~l~gH~---~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          353 FRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFAVHPLVSRE---TTITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             CSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTCCEEEEECS---SCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             cccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccccceeeecCC---CceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence            3  35789999999999988865    6679999999999888888887   8999999999999999999999999999


Q ss_pred             CCCCceEEEEecC---CCCCCCceEEEecCCCEEEEEECCCeEEEEEcC-CCceeeecccccccceeeeecCCCceeeee
Q 001352          608 MNKVQLLTTIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPISTVTGAG  683 (1093)
Q Consensus       608 ~~~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  683 (1093)
                      +..+ .+......   .....+..++|+|++..+. ...  .+.+|... ++..+..+.+|...|.+++|+|++      
T Consensus       426 ~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~------  495 (524)
T 2j04_B          426 AARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETS------  495 (524)
T ss_dssp             SCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCST------
T ss_pred             chHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCC------
Confidence            8654 22111100   0111356889999998553 222  23344332 455677888999999999998542      


Q ss_pred             ccCCceEecCCCCCCCccceeecccccceeccee
Q 001352          684 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  717 (1093)
Q Consensus       684 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  717 (1093)
                                   +.+..+++|+.+|.|++|++.
T Consensus       496 -------------~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          496 -------------AGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             -------------TTTTEEEEECTTSEEEEEECS
T ss_pred             -------------CccHHHHhhccCceEEEEEcc
Confidence                         235689999999999999976

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-33  Score=317.61  Aligned_cols=290  Identities=11%  Similarity=0.099  Sum_probs=257.5

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      ..|.+|++.|++++|+|+|+ +|++|+.||.|+|||+.+++.+..                   +.+|...|.+++|+|+
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~~   85 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDCF   85 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTT
T ss_pred             EEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcCC
Confidence            35789999999999999998 589999999999999999988765                   6789999999999999


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-----CcEEEEECCCCc------
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGS------  477 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~~------  477 (1093)
                      +++|++++.|+.|++||+.+++.+.   .+. |...|.+++|+|+++  ++++++.+     +.|++||+.++.      
T Consensus        86 ~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~  159 (369)
T 3zwl_B           86 TKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELT  159 (369)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeec
Confidence            9999999999999999999987655   343 888999999999999  78899888     999999988764      


Q ss_pred             -----eeEEeecCCC--CeEEeeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001352          478 -----RTYSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCG  549 (1093)
Q Consensus       478 -----~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~  549 (1093)
                           .+..+..|..  .+.+++|++  ++.++++++.||.|++||+.+ ......+..+...|.+++|+|++++|++++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  237 (369)
T 3zwl_B          160 KVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS  237 (369)
T ss_dssp             EECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec
Confidence                 3445556666  899999965  667999999999999999998 666778888999999999999999999997


Q ss_pred             cCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC--------------cEEEEECCCCceEE
Q 001352          550 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------------VIKIWDMNKVQLLT  615 (1093)
Q Consensus       550 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~  615 (1093)
                      .    ++.|++||+.+++.+..+.. .   ..+..++|+|+++++++++.++              .+++||..+++.+.
T Consensus       238 ~----d~~i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  309 (369)
T 3zwl_B          238 R----DTNSFLVDVSTLQVLKKYET-D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG  309 (369)
T ss_dssp             T----TSEEEEEETTTCCEEEEEEC-S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred             C----CceEEEEECCCCceeeeecC-C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence            6    66799999999999888873 3   6899999999999999999888              89999999999999


Q ss_pred             EEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCc
Q 001352          616 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN  656 (1093)
Q Consensus       616 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~  656 (1093)
                      .+..+.  ..|.+++|+|++++|++++.||.|++|++..+.
T Consensus       310 ~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          310 RVQGHF--GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             EEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             heeccc--CcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence            988664  469999999999999999999999999998653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4e-34  Score=326.50  Aligned_cols=293  Identities=12%  Similarity=0.123  Sum_probs=254.5

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCc------eeEEeeeeeeecccccceeeeeeecCCCCCeEE
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ------KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  402 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  402 (1093)
                      +.|.+|.+.|++++|+|  + +|++|+.||.|+|||+.+++      .+..                   +.+|...|.+
T Consensus        10 ~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~   67 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYS-------------------HFVHKSGLHH   67 (397)
T ss_dssp             EESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEE-------------------EECCTTCEEE
T ss_pred             hhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceE-------------------EecCCCcEEE
Confidence            45789999999999999  4 58999999999999999987      3332                   6689999999


Q ss_pred             EEECCC----C---CEEEEEEcCCEEEEEEccCCCcccc--eEEeccc-----cccEEEEEee----CCCCcEE-EEEEc
Q 001352          403 VVWSPD----G---SLLGVAYSKHIVQLYAYHGGSDARQ--QLEIDAH-----VGNVNDLAFS----APCKQIS-VITCG  463 (1093)
Q Consensus       403 v~~s~d----g---~~las~~~d~~i~iwd~~~~~~~~~--~~~~~~h-----~~~v~~~~~s----~d~~~l~-l~s~~  463 (1093)
                      ++|+|+    |   ++|++++.|+.|++||+.+++....  ...+.+|     ...|.+++|+    |+++  + |++++
T Consensus        68 ~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~  145 (397)
T 1sq9_A           68 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATD  145 (397)
T ss_dssp             EEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEE
T ss_pred             EEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEe
Confidence            999999    9   9999999999999999998875100  2367778     5899999999    9999  7 99999


Q ss_pred             CCCcEEEEECCC------CceeE-----Eee-------cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE
Q 001352          464 DDKTIKVWDAVT------GSRTY-----SFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD  525 (1093)
Q Consensus       464 ~d~~i~vwd~~~------~~~~~-----~~~-------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  525 (1093)
                      .||.|++||+.+      ++.+.     .+.       .|...|.+++|++  ++ ++++++.||.|++||+++......
T Consensus       146 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~  222 (397)
T 1sq9_A          146 VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYN  222 (397)
T ss_dssp             TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEE
T ss_pred             CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEE
Confidence            999999999998      77776     774       4899999999965  56 999999999999999999888888


Q ss_pred             ecC---C---CCceEEEEEccCCCEEEEEecCCCCc---eeEEEEeCCCCeeeeeeec-------------ccccCCCeE
Q 001352          526 YDA---P---GLGCTRMAYSANGRRLFSCGTSKEGE---SFLVEWNESEGAIKRTYQG-------------LQLQHNSVS  583 (1093)
Q Consensus       526 ~~~---~---~~~v~~~~~s~d~~~l~~~~~~~~~~---~~i~iwd~~~~~~~~~~~~-------------~~~~~~~v~  583 (1093)
                      +..   |   ...+.+++|+|++++|++++.    +   +.|++||+.+++.+..+.+             |.   ..|.
T Consensus       223 ~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~  295 (397)
T 1sq9_A          223 FESQHSMINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVM  295 (397)
T ss_dssp             EECCC---CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEE
T ss_pred             EeccccccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccC---CcEE
Confidence            888   7   889999999999999999986    5   7899999999999999887             66   8999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe------cC-------------CCCCCCceEEEecCC---------
Q 001352          584 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID------AG-------------GGLPENPRICFNKNG---------  635 (1093)
Q Consensus       584 ~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~~---------  635 (1093)
                      +++|+|++++|++++.||.|++||+.+++.+..+.      .+             .+...|.+++|+|++         
T Consensus       296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~  375 (397)
T 1sq9_A          296 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADL  375 (397)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTT
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccc
Confidence            99999999999999999999999999999999988      43             014569999999998         


Q ss_pred             -CEEEEEECCCeEEEEEcCCC
Q 001352          636 -TLLAVIANENRIKILETPES  655 (1093)
Q Consensus       636 -~~l~~~~~dg~i~iw~~~~~  655 (1093)
                       ++|++++.||.|++|++.++
T Consensus       376 ~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          376 NESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             SCEEEEEETTTEEEEEEEEC-
T ss_pred             cceEEEecCCCcEEEEEcCCC
Confidence             79999999999999998765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-35  Score=340.23  Aligned_cols=350  Identities=10%  Similarity=0.041  Sum_probs=243.7

Q ss_pred             CCCCeEEEEECCCC---------CEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC
Q 001352          396 PGVSVNRVVWSPDG---------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  466 (1093)
Q Consensus       396 h~~~V~~v~~s~dg---------~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~  466 (1093)
                      +.+.|.+|+|+|++         ++||+|+.++.        +                  -..+|+++  .+++++.|+
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~------------------~~~~~~~~--~laS~s~D~  183 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D------------------EPLNEHLE--MFDKEKHSS  183 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C------------------Cccchhhh--hhccCCCCc
Confidence            57899999999987         79999986642        0                  01368888  799999999


Q ss_pred             cEEEEECCCCcee----EEeecCCCCeEEeeeccc----CCccEEEEEecCCeEEEEEcCCCCc-----------eEEec
Q 001352          467 TIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA-----------RVDYD  527 (1093)
Q Consensus       467 ~i~vwd~~~~~~~----~~~~~h~~~v~~~~~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~  527 (1093)
                      +|+|||+.+++..    ..+.+|.+.|.+++|+|.    +++.+|++++.||+|++||+.....           ...+.
T Consensus       184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~  263 (524)
T 2j04_B          184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS  263 (524)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred             eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence            9999999888753    456778899999999886    3467999999999999999976542           23667


Q ss_pred             CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-eeeeeecccccCCCeEEE--EEcCCC-CEEEEEeCCCcE
Q 001352          528 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVV--HFDTAK-DQILAAGDDHVI  603 (1093)
Q Consensus       528 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~v--~~~~~~-~~l~~~~~dg~i  603 (1093)
                      .|...|.+++|++++ .|++++.    ++.|++||+.++. ....+.+|.   ..|.++  +|+|++ .+|++++.|++|
T Consensus       264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~---~~V~sv~~~~s~~g~~~laS~S~D~tv  335 (524)
T 2j04_B          264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHD---SYILSVSTAYSDFEDTVVSTVAVDGYF  335 (524)
T ss_dssp             CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSS---SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred             cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeeccc---ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence            788899999999865 7888876    7789999999774 445677777   899999  578887 889999999999


Q ss_pred             EEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeee
Q 001352          604 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG  683 (1093)
Q Consensus       604 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  683 (1093)
                      +|||+++++....+..+.....+.+++|+|+++.+++++.|++|++||+.++..+..+.+                    
T Consensus       336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g--------------------  395 (524)
T 2j04_B          336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS--------------------  395 (524)
T ss_dssp             EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--------------------
T ss_pred             EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--------------------
Confidence            999999988776665443223478999999999999999999999999987654433333                    


Q ss_pred             ccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEee
Q 001352          684 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR  763 (1093)
Q Consensus       684 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~  763 (1093)
                                                                        |.+.|.+++|+|+|+.|++++.||++++|+
T Consensus       396 --------------------------------------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          396 --------------------------------------------------RETTITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             --------------------------------------------------CSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             --------------------------------------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence                                                              555677777777777777777777777776


Q ss_pred             ecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcc-CceeEEEECC
Q 001352          764 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP  842 (1093)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~-~~~~~~~~~~  842 (1093)
                      .....               +....+.  .     ...+...+..++|+|+++.+..  .+.+.+|+.. ++..+..+.+
T Consensus       426 ~~~~~---------------~~~~~~~--~-----~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~g  481 (524)
T 2j04_B          426 AARRL---------------LHGIKNS--S-----ATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDA  481 (524)
T ss_dssp             SCSST---------------TTCC-------------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------
T ss_pred             chHhh---------------ccccccC--c-----cceeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecC
Confidence            43210               0000000  0     0002234678899999986533  2233344433 5677888999


Q ss_pred             CCCCeEEEEEcCCCC---CEEEEEeCCCeEEEEEcCC
Q 001352          843 PSPTATSLAFNPHDN---NVIAIGMDDSTILIYNARS  876 (1093)
Q Consensus       843 ~~~~i~~l~~s~~d~---~~lasg~~dg~i~iwd~~~  876 (1093)
                      |...|.+++|+| ++   ..||+|+.||.|+||++.-
T Consensus       482 h~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          482 HGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred             CCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence            999999999999 64   5999999999999999873

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.7e-33  Score=322.45  Aligned_cols=319  Identities=18%  Similarity=0.280  Sum_probs=270.8

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+.   .+.+|...|.+++|+  +.  ++++|+.||+|++||
T Consensus       114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd  185 (445)
T 2ovr_B          114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN  185 (445)
T ss_dssp             EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred             ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence            6679887643 355579999999999999999999987554   678999999999998  34  799999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      +.+++.+..+.+|...|.+++++    +..+++++.||.|++||+.+++....+..+...+.++++  +++++++++.  
T Consensus       186 ~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~--  257 (445)
T 2ovr_B          186 AETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY--  257 (445)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred             CCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence            99999999999999999999983    358999999999999999999999999999999999998  7889999886  


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  632 (1093)
                        ++.|++||+.+++.+..+.+|.   ..+.++.|  ++.++++++.||.|++||+.+++.+..+..+.  ..+.++.+ 
T Consensus       258 --dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~-  327 (445)
T 2ovr_B          258 --DFMVKVWDPETETCLHTLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ--SLTSGMEL-  327 (445)
T ss_dssp             --TSCEEEEEGGGTEEEEEECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCC--SCEEEEEE-
T ss_pred             --CCEEEEEECCCCcEeEEecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc--ccEEEEEE-
Confidence              6679999999999999998887   88999999  78899999999999999999999998887653  34555554 


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccce
Q 001352          633 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  712 (1093)
Q Consensus       633 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  712 (1093)
                       +++++++++.||.|++||+.+++.+..+..+                                                
T Consensus       328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------------  358 (445)
T 2ovr_B          328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGP------------------------------------------------  358 (445)
T ss_dssp             -ETTEEEEEETTSCEEEEETTTCCEEEEECST------------------------------------------------
T ss_pred             -eCCEEEEEeCCCeEEEEECCCCcEEEEEccC------------------------------------------------
Confidence             5779999999999999998765333221100                                                


Q ss_pred             ecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCce
Q 001352          713 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF  792 (1093)
Q Consensus       713 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (1093)
                                                                                                      
T Consensus       359 --------------------------------------------------------------------------------  358 (445)
T 2ovr_B          359 --------------------------------------------------------------------------------  358 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEE-----CCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001352          793 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDD  866 (1093)
Q Consensus       793 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~d  866 (1093)
                             ..|...|.+++|+  +.++++++ ||.|++||+.+++.+..+     ..|...|.+++|+| ++.++|+|+.|
T Consensus       359 -------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~d  428 (445)
T 2ovr_B          359 -------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRN  428 (445)
T ss_dssp             -------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSS
T ss_pred             -------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccC
Confidence                   0156677778774  57888887 789999999999888887     46788999999999 89999999999


Q ss_pred             Ce----EEEEEcCC
Q 001352          867 ST----ILIYNARS  876 (1093)
Q Consensus       867 g~----i~iwd~~~  876 (1093)
                      |+    |.+||+..
T Consensus       429 g~~~~~l~v~df~~  442 (445)
T 2ovr_B          429 GTEETKLLVLDFDV  442 (445)
T ss_dssp             SSSCCEEEEEECCC
T ss_pred             CCCccEEEEEECCC
Confidence            97    99999874

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-35  Score=338.75  Aligned_cols=386  Identities=12%  Similarity=0.142  Sum_probs=277.4

Q ss_pred             EECCCCCEEEEEEcCCEEEEEEccCCCcccceEEe-ccccccEEEEEeeC-CCCcEEEEEEcCCCcEEEEECCC---Cc-
Q 001352          404 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI-DAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVT---GS-  477 (1093)
Q Consensus       404 ~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~---~~-  477 (1093)
                      .|+|+++.+++++      .|+.. ++.+.   .+ .+|.+.|++++|+| +++  +|++|+.||+|+|||+.+   +. 
T Consensus        34 ~f~~~~~~~~~~~------~w~~~-g~~~~---~~~~~h~~~V~~~~~s~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~  101 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLR-GKLIA---TLMENEPNSITSSAVSPGETP--YLITGSDQGVIKIWNLKEIIVGEV  101 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCC-CCEEE---EECTTTTSCEEEEEEECSSSC--EEEEEETTSEEEEEEHHHHHTTCC
T ss_pred             hcCCccccccccc------ccccc-ceEEe---eeccCCCCceEEEEECCCCCC--EEEEecCCceEEEeECcccccCcc
Confidence            3788888888765      37743 33333   56 78999999999999 998  899999999999999877   43 


Q ss_pred             --eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC---CCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          478 --RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD---SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       478 --~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                        ....+ +|...|.+++|++  ++.+|++++.||.|++||+.   .+........+  .+..+.++|++          
T Consensus       102 ~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~----------  166 (437)
T 3gre_A          102 YSSSLTY-DCSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG----------  166 (437)
T ss_dssp             CSCSEEE-ECSSCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS----------
T ss_pred             cceeeec-cCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc----------
Confidence              23344 4999999999965  66799999999999999985   32222222211  23333333321          


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccccCCCeEEEE--EcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH--FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  630 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  630 (1093)
                                            +   ...+.++.  +++++.++++++.||.|++||+.+++.+..+..+.+...|.+++
T Consensus       167 ----------------------~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~  221 (437)
T 3gre_A          167 ----------------------K---NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSIC  221 (437)
T ss_dssp             ----------------------S---CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEE
T ss_pred             ----------------------c---ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEE
Confidence                                  1   24455555  67889999999999999999999999999998743345799999


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccc
Q 001352          631 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  710 (1093)
Q Consensus       631 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~  710 (1093)
                      |+|++++|++++.||.|++||+.++..+..+..                                               
T Consensus       222 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----------------------------------------------  254 (437)
T 3gre_A          222 IDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF-----------------------------------------------  254 (437)
T ss_dssp             ECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC-----------------------------------------------
T ss_pred             ECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec-----------------------------------------------
Confidence            999999999999999999999986543332210                                               


Q ss_pred             ceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCC
Q 001352          711 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP  790 (1093)
Q Consensus       711 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (1093)
                                            .+...|.+++++|                                             
T Consensus       255 ----------------------~~~~~v~~~~~~~---------------------------------------------  267 (437)
T 3gre_A          255 ----------------------GDHAPITHVEVCQ---------------------------------------------  267 (437)
T ss_dssp             ----------------------TTCEEEEEEEECT---------------------------------------------
T ss_pred             ----------------------CCCCceEEEEecc---------------------------------------------
Confidence                                  0112233332222                                             


Q ss_pred             ceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeE
Q 001352          791 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI  869 (1093)
Q Consensus       791 ~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i  869 (1093)
                                         +|++++.+|++++ |+.|++||+.+++.+..+.+|...+..+.|+| +++.+    .+.  
T Consensus       268 -------------------~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l----~~~--  321 (437)
T 3gre_A          268 -------------------FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP-IEKGL----EEL--  321 (437)
T ss_dssp             -------------------TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC-BCSSG----GGC--
T ss_pred             -------------------ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc-ccccc----ccc--
Confidence                               2446778888887 68899999999999999999999999999999 66554    111  


Q ss_pred             EEEEcCCcceeeeccc--ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEcc
Q 001352          870 LIYNARSSEVISKLEG--HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK  947 (1093)
Q Consensus       870 ~iwd~~~~~~~~~l~~--h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  947 (1093)
                                  .+.+  |...|++++|+ ++++|++++.|+.|++||+.+++...     ...++......+....+++
T Consensus       322 ------------~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  383 (437)
T 3gre_A          322 ------------NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK-----AVISPSRFSDVFIPTQVTA  383 (437)
T ss_dssp             ------------CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE-----EEECC--CCCEEEEEEEET
T ss_pred             ------------eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce-----EEecccccCceEEEEEeec
Confidence                        1445  99999999999 78999999999999999999876332     2222222123466677777


Q ss_pred             CCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEE
Q 001352          948 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD--CRMVFTSFVDGTLSIHE 1007 (1093)
Q Consensus       948 dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~d--g~~l~t~~~dg~v~vwd 1007 (1093)
                      +..+++..       |+...+.... ....|...|.+++|+++  +.+|++|+.||.|+||+
T Consensus       384 ~~~~~~~~-------~~~~~~~~~~-~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          384 NLTMLLRK-------MKRTSTHSVD-DSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             TEEEEEEE-------CC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ceEEEEEe-------cccccccccC-cccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            76665544       2222333332 24568999999999998  78999999999999994

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-33  Score=308.32  Aligned_cols=291  Identities=20%  Similarity=0.276  Sum_probs=253.7

Q ss_pred             HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      ..++|.+|.+.|++++| |++++ |++|+.||.|++||+.+++....                   +..|...|.+++|+
T Consensus        10 ~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~~~   68 (313)
T 3odt_A           10 LSATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVCYD   68 (313)
T ss_dssp             EEEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEEEE
T ss_pred             HHHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEEEC
Confidence            34568899999999999 99984 89999999999999988876654                   55689999999999


Q ss_pred             CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC
Q 001352          407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  486 (1093)
Q Consensus       407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~  486 (1093)
                      |++++|++++.|+.|++|++...........+.+|...|.+++|  +++  ++++++.|+.|++||  .++.+..+..|.
T Consensus        69 ~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~~~  142 (313)
T 3odt_A           69 SEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQAHN  142 (313)
T ss_dssp             TTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEECCS
T ss_pred             CCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecccCC
Confidence            99999999999999999999876554555578899999999999  456  799999999999999  788888999999


Q ss_pred             CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352          487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  565 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~  565 (1093)
                      ..+.++++.+. ++.++++++.||.|++||  .......+.. +...+.+++|+|++. +++++.    ++.|++||+.+
T Consensus       143 ~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~  214 (313)
T 3odt_A          143 ASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHT  214 (313)
T ss_dssp             SCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTT
T ss_pred             CceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCc
Confidence            99999999763 457999999999999999  4445556665 788999999999999 777765    67799999999


Q ss_pred             CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352          566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  645 (1093)
Q Consensus       566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  645 (1093)
                      ++.+..+.+|.   ..+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.  ..+.+++|+|+++ +++++.||
T Consensus       215 ~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~~~~~~dg  287 (313)
T 3odt_A          215 GDVLRTYEGHE---SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA--ISIWSVDCMSNGD-IIVGSSDN  287 (313)
T ss_dssp             CCEEEEEECCS---SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS--SCEEEEEECTTSC-EEEEETTS
T ss_pred             hhhhhhhhcCC---ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC--ceEEEEEEccCCC-EEEEeCCC
Confidence            99999998887   899999999998 69999999999999999999999988664  4689999999998 66799999


Q ss_pred             eEEEEEcCCCceee
Q 001352          646 RIKILETPESNSVD  659 (1093)
Q Consensus       646 ~i~iw~~~~~~~~~  659 (1093)
                      .|++|++.+++...
T Consensus       288 ~i~iw~~~~~~~~~  301 (313)
T 3odt_A          288 LVRIFSQEKSRWAS  301 (313)
T ss_dssp             CEEEEESCGGGCCC
T ss_pred             cEEEEeCCCCceee
Confidence            99999998775543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=7.5e-34  Score=319.00  Aligned_cols=294  Identities=12%  Similarity=0.188  Sum_probs=246.0

Q ss_pred             hhccCCCCceeeeecCCCceEEEEEcc---CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          330 TLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       330 ~l~~h~~~V~~~~~spdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      .+.+|.+.|.+++|+|++++++++|+.   ||.|+|||+.+++.....                  ..+|...|.+++|+
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v~~~~~~   74 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPIKCGTFG   74 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCEEEEECT
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcEEEEEEc
Confidence            457899999999999999888889887   999999999998865432                  22589999999999


Q ss_pred             CC---CCEEEEEEcCCEEEEEEccCCC-cccceEEeccccccEEEEE------eeCCCCcEEEEEEcCCCcEEEEECCCC
Q 001352          407 PD---GSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLA------FSAPCKQISVITCGDDKTIKVWDAVTG  476 (1093)
Q Consensus       407 ~d---g~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~------~s~d~~~l~l~s~~~d~~i~vwd~~~~  476 (1093)
                      |+   +++|++|+.|+.|++||+.+++ .+.   .+.+|...|.+++      |+|+++  +|++++.|+.|++||+.++
T Consensus        75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~  149 (357)
T 3i2n_A           75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQK  149 (357)
T ss_dssp             TCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSC
T ss_pred             CCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCC
Confidence            99   7999999999999999999886 333   6789999999995      568888  8999999999999999998


Q ss_pred             c-eeEEeecCCC----CeEEeeec--ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc---CCCEEE
Q 001352          477 S-RTYSFEGHGA----PVYSLCPH--AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA---NGRRLF  546 (1093)
Q Consensus       477 ~-~~~~~~~h~~----~v~~~~~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~  546 (1093)
                      + .+..+..|.+    .+.+++|.  .++++.++++++.||.|++||+++..... ...+...+.+++|+|   ++.+++
T Consensus       150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~  228 (357)
T 3i2n_A          150 DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLV  228 (357)
T ss_dssp             SSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEE
T ss_pred             CCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEE
Confidence            7 7788876655    78888742  24577899999999999999999877644 355677999999999   999999


Q ss_pred             EEecCCCCceeEEEEeCCCCeeeeeee-----cccccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc--------
Q 001352          547 SCGTSKEGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ--------  612 (1093)
Q Consensus       547 ~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~~~~~--------  612 (1093)
                      +++.    ++.|++||+.+++....+.     +|.   ..|.+++|+|+++ ++++++.||.|++||+.++.        
T Consensus       229 ~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  301 (357)
T 3i2n_A          229 ATSL----EGKFHVFDMRTQHPTKGFASVSEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE  301 (357)
T ss_dssp             EEES----TTEEEEEEEEEEETTTEEEEEEEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred             EECC----CCeEEEEeCcCCCcccceeeeccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence            9876    6679999999888776665     555   8999999999998 79999999999999998643        


Q ss_pred             -----------eEEEEecCCCCCCCceEEEecCCCEEE-EEECCCeEEEEEcCCCc
Q 001352          613 -----------LLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESN  656 (1093)
Q Consensus       613 -----------~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~  656 (1093)
                                 .+..+..+  ...|.+++|+|++++|+ +++.||.|++|++.+..
T Consensus       302 g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          302 GIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             SCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             CCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence                       44555544  45699999999999998 79999999999998653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.4e-32  Score=320.74  Aligned_cols=344  Identities=15%  Similarity=0.195  Sum_probs=271.5

Q ss_pred             eEEecCCCCce-EEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC
Q 001352          523 RVDYDAPGLGC-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH  601 (1093)
Q Consensus       523 ~~~~~~~~~~v-~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg  601 (1093)
                      ...+.+|...+ .++.+  +++++++++.    ++.|++||+.+++.+..+.+|.   ..|.+++|+|++ .+++|+.||
T Consensus       114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~----dg~i~vwd~~~~~~~~~~~~h~---~~V~~l~~~~~~-~l~s~s~dg  183 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQF--EDNYVITGAD----DKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHGG-ILVSGSTDR  183 (464)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECSTT-EEEEEETTS
T ss_pred             eEEEcCCCCCcEEEEEE--CCCEEEEEcC----CCcEEEEECCCCcEEEEEeCCC---cCEEEEEEcCCC-EEEEEeCCC
Confidence            34556666664 55544  6789999986    6679999999999999999888   999999999987 999999999


Q ss_pred             cEEEEECCCCceEEEEecCCCCCCCceEEEe--cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCce
Q 001352          602 VIKIWDMNKVQLLTTIDAGGGLPENPRICFN--KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  679 (1093)
Q Consensus       602 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  679 (1093)
                      +|++||+.+++.+..+..+  ...|.+++|+  +++.++++++.||.|++|++.+............             
T Consensus       184 ~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-------------  248 (464)
T 3v7d_B          184 TVRVWDIKKGCCTHVFEGH--NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-------------  248 (464)
T ss_dssp             CEEEEETTTTEEEEEECCC--SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-------------
T ss_pred             CEEEEECCCCcEEEEECCC--CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-------------
Confidence            9999999999999888765  4568999998  5789999999999999999986643321110000             


Q ss_pred             eeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecccee
Q 001352          680 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH  759 (1093)
Q Consensus       680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v  759 (1093)
                                                                                ...+.+.+++...+.       
T Consensus       249 ----------------------------------------------------------~~~~~~~~~~~~~~~-------  263 (464)
T 3v7d_B          249 ----------------------------------------------------------YPLVFHTPEENPYFV-------  263 (464)
T ss_dssp             ----------------------------------------------------------SSEEESCGGGCTTEE-------
T ss_pred             ----------------------------------------------------------cceEeeccCCCeEEE-------
Confidence                                                                      000011111110000       


Q ss_pred             EEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEE
Q 001352          760 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTIL  838 (1093)
Q Consensus       760 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~  838 (1093)
                                                       ..  +  .+|...+.++  ++++.++++++ |+.|++||+.+++.+.
T Consensus       264 ---------------------------------~~--~--~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~  304 (464)
T 3v7d_B          264 ---------------------------------GV--L--RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLY  304 (464)
T ss_dssp             ---------------------------------EE--E--CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ---------------------------------EE--c--cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence                                             00  0  0266666665  68899999998 7999999999999999


Q ss_pred             EECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352          839 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       839 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~  918 (1093)
                      .+.+|...|.+++|+| ++++|++|+.||.|++||+.+++++..+.+|...|.+++|+  +++|++++.||.|++||+.+
T Consensus       305 ~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~  381 (464)
T 3v7d_B          305 ILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND  381 (464)
T ss_dssp             EECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred             EecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC
Confidence            9999999999999999 89999999999999999999999999999999999999997  57999999999999999998


Q ss_pred             CceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEe
Q 001352          919 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF  998 (1093)
Q Consensus       919 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~  998 (1093)
                      ++...    ...  +.   ..+..++|++++++++++.|+.|++||+.+++.+.....+|...|.+++|+ ++.++++++
T Consensus       382 ~~~~~----~~~--~~---~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~  451 (464)
T 3v7d_B          382 YSRKF----SYH--HT---NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVE  451 (464)
T ss_dssp             CCEEE----EEE--CT---TCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEE
T ss_pred             Cceee----eec--CC---CCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEE
Confidence            65322    111  11   257789999999999998899999999999999987777899999999997 445566666


Q ss_pred             CCCcEEEEEc
Q 001352          999 VDGTLSIHEA 1008 (1093)
Q Consensus       999 ~dg~v~vwd~ 1008 (1093)
                      .||.+.+|-+
T Consensus       452 ~~g~~~i~~l  461 (464)
T 3v7d_B          452 KDGQSFLEIL  461 (464)
T ss_dssp             ETTEEEEEEE
T ss_pred             eCCeEEEEEe
Confidence            6776655543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.1e-32  Score=307.23  Aligned_cols=299  Identities=21%  Similarity=0.304  Sum_probs=249.5

Q ss_pred             ecCCCCCeEEEEECCC-CCEEEEEEcCCEEEEEEccCCCcc--cceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352          393 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  469 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~d-g~~las~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  469 (1093)
                      |.||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++..  .....+.+|...|.+++|+|+++  +|++++.|+.|+
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i~  111 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTLR  111 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccce
Confidence            8899999999999997 689999999999999999876542  23446789999999999999999  899999999999


Q ss_pred             EEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCC--CEEE
Q 001352          470 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANG--RRLF  546 (1093)
Q Consensus       470 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~d~--~~l~  546 (1093)
                      +|+...+........+...+..+.+.+  ++.+|++++.|+.+++||........ ....+...+..++|++++  .+++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  189 (340)
T 4aow_A          112 LWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV  189 (340)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred             EEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence            999999999988888888888888754  55789999999999999987655433 345677889999998875  4566


Q ss_pred             EEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCC
Q 001352          547 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  626 (1093)
Q Consensus       547 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  626 (1093)
                      +++.    ++.|++||+.+++.+..+.+|.   ..|.+++|+|++++|++|+.||.|++||+.+++.+..+..+.   .+
T Consensus       190 s~~~----d~~i~i~d~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v  259 (340)
T 4aow_A          190 SCGW----DKLVKVWNLANCKLKTNHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---II  259 (340)
T ss_dssp             EEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS---CE
T ss_pred             EEcC----CCEEEEEECCCCceeeEecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc---eE
Confidence            6665    6679999999999999999887   899999999999999999999999999999999998887653   48


Q ss_pred             ceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeec
Q 001352          627 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  706 (1093)
Q Consensus       627 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  706 (1093)
                      .+++|+|++.++ +++.|+.|++||+.+...+..+.....                                        
T Consensus       260 ~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~----------------------------------------  298 (340)
T 4aow_A          260 NALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVI----------------------------------------  298 (340)
T ss_dssp             EEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC------------------------------------------
T ss_pred             EeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccce----------------------------------------
Confidence            999999988655 555689999999987765544432110                                        


Q ss_pred             ccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCc
Q 001352          707 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN  767 (1093)
Q Consensus       707 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~  767 (1093)
                                           ......|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus       299 ---------------------~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          299 ---------------------STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             --------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             ---------------------eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence                                 0011237778999999999999999999999999998653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4e-34  Score=322.46  Aligned_cols=293  Identities=16%  Similarity=0.220  Sum_probs=245.9

Q ss_pred             hccCCCCceeeeecCC---CceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          331 LIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       331 l~~h~~~V~~~~~spd---g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      +.+|.+.|++++|+|+   +..++++++.++.|++||+.+++.+....              ......|...|.+++|+|
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~   79 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAWTY   79 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEEEE
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEecc
Confidence            4589999999999984   44456666677899999999887765321              111334788999999999


Q ss_pred             C----CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeC-CCCcEEEEEEcCCCcEEEEECCCCceeEEe
Q 001352          408 D----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSF  482 (1093)
Q Consensus       408 d----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~  482 (1093)
                      +    |++|++|+.|+.|++||+.+++.+.   .+.+|...|.+++|+| ++.  ++++++.||.|++||+.+++.+..+
T Consensus        80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~  154 (366)
T 3k26_A           80 DSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIF  154 (366)
T ss_dssp             CTTTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEe
Confidence            9    6799999999999999999987554   6778999999999999 777  8999999999999999999999988


Q ss_pred             ---ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE----------------------------ecCCCC
Q 001352          483 ---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----------------------------YDAPGL  531 (1093)
Q Consensus       483 ---~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----------------------------~~~~~~  531 (1093)
                         .+|...|.+++|++  ++.+|++++.||.|++||+++.+....                            ...+..
T Consensus       155 ~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (366)
T 3k26_A          155 GGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN  232 (366)
T ss_dssp             CSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred             cccccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence               68999999999965  667999999999999999987544322                            223788


Q ss_pred             ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee--------------eeeeecccccCCCeEEEEEcCC--CCEEE
Q 001352          532 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--------------KRTYQGLQLQHNSVSVVHFDTA--KDQIL  595 (1093)
Q Consensus       532 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~~~v~~v~~~~~--~~~l~  595 (1093)
                      .|.+++|+  ++++++++.    ++.|++||+.++..              +..+.+|.   ..|.+++|+|+  +++|+
T Consensus       233 ~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~l~  303 (366)
T 3k26_A          233 YVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ---CDIWYMRFSMDFWQKMLA  303 (366)
T ss_dssp             CCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS---CCSSCCCCEECTTSSEEE
T ss_pred             eEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccC---CcEEEEEEcCCCCCcEEE
Confidence            89999998  778988876    67799999988744              66666666   78999999999  99999


Q ss_pred             EEeCCCcEEEEECCCCce----EEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352          596 AAGDDHVIKIWDMNKVQL----LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  653 (1093)
Q Consensus       596 ~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  653 (1093)
                      +++.||.|++||+.+++.    ...+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus       304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            999999999999998764    3466666445679999999999999999999999999975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.4e-34  Score=330.22  Aligned_cols=300  Identities=17%  Similarity=0.198  Sum_probs=236.7

Q ss_pred             hhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-C
Q 001352          330 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-D  408 (1093)
Q Consensus       330 ~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-d  408 (1093)
                      ...+|.+.|+|++|+|.+..+||+|+.||+|+|||+.+++......                 +.+|.+.|++++|+| +
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-----------------~~gH~~~V~~l~f~p~~  176 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-----------------GIGAGGSITGLKFNPLN  176 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-----------------CCSSSCCCCEEEECSSC
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-----------------ccCCCCCEEEEEEeCCC
Confidence            4567899999999999654479999999999999999876543311                 568999999999998 7


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  488 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  488 (1093)
                      +.+|++|+.|++|++||++++. .........+...+.+++|+|+++  +|++|+.||.|++||+. ++.+..+.+|...
T Consensus       177 ~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~  252 (435)
T 4e54_B          177 TNQFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKK  252 (435)
T ss_dssp             TTEEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSC
T ss_pred             CCEEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccce
Confidence            8999999999999999998753 222212223455688999999999  89999999999999975 5677888999999


Q ss_pred             eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352          489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  565 (1093)
Q Consensus       489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~  565 (1093)
                      |.+++|+|..+ .++++++.|+.|++||++......   ....|...|.+++|+|+|++|++++.    ++.|++||+.+
T Consensus       253 v~~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~  327 (435)
T 4e54_B          253 VTHVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQ  327 (435)
T ss_dssp             EEEEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSS
T ss_pred             EEeeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCC
Confidence            99999976532 588999999999999998766543   33567789999999999999999986    66799999999


Q ss_pred             Ceeeeeeeccccc---CCCeEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCceEEEEecCCCCCCCceE-
Q 001352          566 GAIKRTYQGLQLQ---HNSVSVVHFDTAKDQILAAG------------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-  629 (1093)
Q Consensus       566 ~~~~~~~~~~~~~---~~~v~~v~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-  629 (1093)
                      +.....+..|...   ...+..+.|+|++..+++++            .++.|++||..+++.+..+..+. ...|.++ 
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~  406 (435)
T 4e54_B          328 WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLN  406 (435)
T ss_dssp             SSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEE
T ss_pred             CccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEE
Confidence            9887777665411   11233456777776666653            34679999999999988875433 3457776 


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCCCce
Q 001352          630 CFNKNGTLLAVIANENRIKILETPESNS  657 (1093)
Q Consensus       630 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~  657 (1093)
                      +|+|+|++|++|+ |+.|+||++.+++.
T Consensus       407 ~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          407 EFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             EECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             EECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            6999999999876 78999999987753

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.7e-33  Score=313.34  Aligned_cols=203  Identities=13%  Similarity=0.127  Sum_probs=172.3

Q ss_pred             CCCCeeEEEEccCCCEEEEEe---CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352          802 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  878 (1093)
Q Consensus       802 ~~~~v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~  878 (1093)
                      +...+.+++|||||+++++++   |++|+|||+.+++.+..+. |...|.+++|+| |+++|++++.+ .+++|+..+++
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~  208 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS  208 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence            556788999999999988765   6899999999999998886 778899999999 99999999855 57777777776


Q ss_pred             eee--ecccccCCeEEEEEeCCCCEEEEEeCCC----cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEE
Q 001352          879 VIS--KLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF  952 (1093)
Q Consensus       879 ~~~--~l~~h~~~V~~l~~s~dg~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  952 (1093)
                      .+.  ...+|...|.+++|+||++++++++.|+    .+++|++......... .....++..   .|++++|||||++|
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~---~V~~~~~Spdg~~l  284 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-SKQVTNRFK---GITSMDVDMKGELA  284 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-EEEEESSCS---CEEEEEECTTSCEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-eeeecCCCC---CeEeEEECCCCCce
Confidence            553  4567999999999999999999999887    6888998775533222 222334443   79999999999999


Q ss_pred             EE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001352          953 LL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus       953 ~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
                      |+ +.|++|+|||+.+++++..+..+|...|++++|||||++||+||.|++|+|||++..
T Consensus       285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99 578999999999999999888899999999999999999999999999999999754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.6e-33  Score=319.93  Aligned_cols=348  Identities=11%  Similarity=0.123  Sum_probs=242.5

Q ss_pred             eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEec-----------CCCC
Q 001352          556 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGL  623 (1093)
Q Consensus       556 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~  623 (1093)
                      ..+++|+...++....+.+|.   ..|.+++|+| +++++++++.||.|++||+.+++....+..           ..+.
T Consensus        23 ~~~~v~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (408)
T 4a11_B           23 STRRVLGLELNKDRDVERIHG---GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR   99 (408)
T ss_dssp             HHHHHHTEEECTTEEECCCCS---SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred             CcceeeccccCcceeeeeccC---CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence            347788888888888888877   9999999999 999999999999999999998766544431           1244


Q ss_pred             CCCceEEEec-CCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccc
Q 001352          624 PENPRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  702 (1093)
Q Consensus       624 ~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  702 (1093)
                      ..|.+++|+| ++.++++++.||.|++|++.++.....+.                                        
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------------------------------  139 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----------------------------------------  139 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----------------------------------------
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----------------------------------------
Confidence            5689999999 77899999999999999987653221110                                        


Q ss_pred             eeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCc
Q 001352          703 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  782 (1093)
Q Consensus       703 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  782 (1093)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (408)
T 4a11_B          140 --------------------------------------------------------------------------------  139 (408)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCceeeccCCCCCCCCCeeEEEEcc---CCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCC
Q 001352          783 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN  858 (1093)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~---dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~  858 (1093)
                                         +...+.++++++   ++.++++++ ++.|++||+.+++.+..+..|...|.+++|+| ++.
T Consensus       140 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~  199 (408)
T 4a11_B          140 -------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYD  199 (408)
T ss_dssp             -------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCT
T ss_pred             -------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCC
Confidence                               222334444544   445777776 68999999999999999999999999999999 666


Q ss_pred             -EEEEEeCCCeEEEEEcCCcc-eeeec---------------ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce
Q 001352          859 -VIAIGMDDSTILIYNARSSE-VISKL---------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI  921 (1093)
Q Consensus       859 -~lasg~~dg~i~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~  921 (1093)
                       +|++|+.||.|++||+.++. .+..+               .+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus       200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  279 (408)
T 4a11_B          200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN  279 (408)
T ss_dssp             TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred             cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence             69999999999999998765 33333               57999999999999999999999999999999998664


Q ss_pred             eeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCC
Q 001352          922 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1001 (1093)
Q Consensus       922 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg 1001 (1093)
                      ..............  ...........+.+++++.++.|++||+.+++.+.. +.+|...|.+++|+|||++|++++.||
T Consensus       280 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg  356 (408)
T 4a11_B          280 TLVNYGKVCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCCVFQSNFQELYSGSRDC  356 (408)
T ss_dssp             CCCCCCCCCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE-ECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             ceeccccccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceee-eccCCCeEEEEEEcCCCCEEEEECCCC
Confidence            32111111111111  122333444456666668999999999999999887 568999999999999999999999999


Q ss_pred             cEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352         1002 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus      1002 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
                      .|++||+.+++.+.......             ....+.|.+...+...+.++.+++|+.+
T Consensus       357 ~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          357 NILAWVPSLYEPVPDDDETT-------------TKSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             CEEEEEECC----------------------------------------------------
T ss_pred             eEEEEeCCCCCccCCCCceE-------------eccccccccceeecccCccCceeecCCc
Confidence            99999999998775443111             1122333345677888899999999864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.1e-33  Score=314.20  Aligned_cols=292  Identities=12%  Similarity=0.054  Sum_probs=246.6

Q ss_pred             hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCc--eeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      +..|.+.|++++|+|||+ +|++|+.|+.|++||+.+++  .+..                   +.+|...|.+++|+|+
T Consensus         4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~   63 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPD   63 (372)
T ss_dssp             EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETT
T ss_pred             ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCC
Confidence            456889999999999998 58999999999999999886  4433                   6689999999999999


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce---eEE-eec
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYS-FEG  484 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~-~~~  484 (1093)
                      +++|++++.|+.|++||+.+++... ...+.+|...|.+++|+|+++  ++++++.|+.|++||+.+++.   ... ...
T Consensus        64 ~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  140 (372)
T 1k8k_C           64 SNRIVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKP  140 (372)
T ss_dssp             TTEEEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred             CCEEEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecc
Confidence            9999999999999999998876332 224567999999999999999  899999999999999998873   333 367


Q ss_pred             CCCCeEEeeecccCCccEEEEEecCCeEEEEEcC------------------CCCceEEecCCCCceEEEEEccCCCEEE
Q 001352          485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------------SLGARVDYDAPGLGCTRMAYSANGRRLF  546 (1093)
Q Consensus       485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~------------------~~~~~~~~~~~~~~v~~~~~s~d~~~l~  546 (1093)
                      |...|.+++|++  ++.++++++.||.|++||+.                  .......+..+...+.+++|+|++++++
T Consensus       141 ~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  218 (372)
T 1k8k_C          141 IRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  218 (372)
T ss_dssp             CCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             cCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence            899999999965  66799999999999999954                  5566777778888999999999999999


Q ss_pred             EEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceEEE--------
Q 001352          547 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLLTT--------  616 (1093)
Q Consensus       547 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~--------  616 (1093)
                      +++.    ++.|++||+.+++.+..+..+.   ..+.+++|+|++.+++++ .|+.|++|++.+  ++....        
T Consensus       219 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~  290 (372)
T 1k8k_C          219 WVSH----DSTVCLADADKKMAVATLASET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ  290 (372)
T ss_dssp             EEET----TTEEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred             EEeC----CCEEEEEECCCCceeEEEccCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence            9986    6779999999999999998877   899999999999877777 999999999987  431100        


Q ss_pred             ----------------------------Eec-CCCCCCCceEEEe-cCC---CEEEEEECCCeEEEEEcCCC
Q 001352          617 ----------------------------IDA-GGGLPENPRICFN-KNG---TLLAVIANENRIKILETPES  655 (1093)
Q Consensus       617 ----------------------------~~~-~~~~~~v~~v~~s-~~~---~~l~~~~~dg~i~iw~~~~~  655 (1093)
                                                  ... .++...|.+++|. ++|   .+|++++.||.|++|++.+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             ------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             chhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence                                        111 1445679999866 566   99999999999999998754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-32  Score=307.65  Aligned_cols=289  Identities=12%  Similarity=0.146  Sum_probs=259.1

Q ss_pred             eeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEE
Q 001352          391 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  470 (1093)
Q Consensus       391 ~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  470 (1093)
                      ..+.+|...|++++|+|++++|++++.|+.|++||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|+.|++
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i  100 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKL  100 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEE
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEE
Confidence            3478999999999999999999999999999999999987554   6789999999999999999  8999999999999


Q ss_pred             EECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecC-----CeEEEEEcCCCCc-----------eEEecCCCC--c
Q 001352          471 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGA-----------RVDYDAPGL--G  532 (1093)
Q Consensus       471 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~-----------~~~~~~~~~--~  532 (1093)
                      ||+.+++.+..+. +...|.+++|++  ++.++++++.+     |.|++||+.....           ...+..+..  .
T Consensus       101 wd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (369)
T 3zwl_B          101 WDVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA  177 (369)
T ss_dssp             EETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred             EECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence            9999999999988 889999999965  66899999999     9999999976542           233344444  8


Q ss_pred             eEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001352          533 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  611 (1093)
Q Consensus       533 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~  611 (1093)
                      +.+++|+|+++++++++.    ++.|++||+.+ +..+..+..|.   ..|.+++|+|++++|++++.||.|++||+.++
T Consensus       178 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          178 ATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHE---KSISDMQFSPDLTYFITSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             EEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             eeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCC---CceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence            999999999999999876    67799999998 78888888877   89999999999999999999999999999999


Q ss_pred             ceEEEEecCCCCCCCceEEEecCCCEEEEEECCC--------------eEEEEEcCCCceeeecccccccceeeeecCCC
Q 001352          612 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--------------RIKILETPESNSVDAAGVLSDNLRKLSVNPIS  677 (1093)
Q Consensus       612 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~  677 (1093)
                      +.+..+...   ..+..++|+|+++++++++.++              .+++|+..+++.+..+.+|...|.+++|+   
T Consensus       251 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s---  324 (369)
T 3zwl_B          251 QVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS---  324 (369)
T ss_dssp             CEEEEEECS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC---
T ss_pred             ceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC---
Confidence            999888743   4589999999999999999988              89999999999999999999999999986   


Q ss_pred             ceeeeeccCCceEecCCCCCCCccceeecccccceecceeec
Q 001352          678 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA  719 (1093)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~  719 (1093)
                                         |+++++++++.|+.+++|++...
T Consensus       325 -------------------~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          325 -------------------PQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             -------------------TTSSEEEEEETTSEEEEEEECHH
T ss_pred             -------------------CCCCEEEEEcCCCeEEEEECccc
Confidence                               78889999999999999998743

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.5e-33  Score=323.09  Aligned_cols=302  Identities=12%  Similarity=0.117  Sum_probs=232.0

Q ss_pred             eeeecccccCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec-CCCEEEEEECCCeE
Q 001352          570 RTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRI  647 (1093)
Q Consensus       570 ~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i  647 (1093)
                      ....+|.   ..|++++|+|. ++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++++|++++.||+|
T Consensus       113 ~~~~~~~---~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v  189 (435)
T 4e54_B          113 QKAAPFD---RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT  189 (435)
T ss_dssp             CEEEECS---SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred             ccCCCCC---CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence            3444454   78999999994 5789999999999999999888777776666677899999998 78999999999999


Q ss_pred             EEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcccccc
Q 001352          648 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL  727 (1093)
Q Consensus       648 ~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~  727 (1093)
                      ++||+.+..... +                                                                  
T Consensus       190 ~iwd~~~~~~~~-~------------------------------------------------------------------  202 (435)
T 4e54_B          190 RLQDFKGNILRV-F------------------------------------------------------------------  202 (435)
T ss_dssp             EEEETTSCEEEE-E------------------------------------------------------------------
T ss_pred             EEeeccCCceeE-E------------------------------------------------------------------
Confidence            999986431100 0                                                                  


Q ss_pred             ccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCee
Q 001352          728 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  807 (1093)
Q Consensus       728 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  807 (1093)
                                     ...          +                                            .+...+.
T Consensus       203 ---------------~~~----------~--------------------------------------------~~~~~~~  213 (435)
T 4e54_B          203 ---------------ASS----------D--------------------------------------------TINIWFC  213 (435)
T ss_dssp             ---------------ECC----------S--------------------------------------------SCSCCCC
T ss_pred             ---------------ecc----------C--------------------------------------------CCCccEE
Confidence                           000          0                                            1344567


Q ss_pred             EEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeee---c
Q 001352          808 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK---L  883 (1093)
Q Consensus       808 ~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~---l  883 (1093)
                      +++|+|++++|++++ ||.|++||+. ++.+..+.+|...|++++|+|++..+|++|+.|+.|++||+.+++....   .
T Consensus       214 ~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~  292 (435)
T 4e54_B          214 SLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS  292 (435)
T ss_dssp             CEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBC
T ss_pred             EEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEe
Confidence            889999999999998 6999999986 5667788899999999999995556899999999999999988765433   3


Q ss_pred             ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE--------
Q 001352          884 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--------  955 (1093)
Q Consensus       884 ~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--------  955 (1093)
                      .+|...|++++|+|||++|++++.||.|+|||+.+++............  .....+..+.|+|++..++++        
T Consensus       293 ~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  370 (435)
T 4e54_B          293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH--FQHLTPIKAAWHPRYNLIVVGRYPDPNFK  370 (435)
T ss_dssp             CBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC--CSSSCCCBCEECSSSSCEEEECCCCTTSC
T ss_pred             eeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc--cccceeEEEEEcCCCCEEEEEEcCCCCeE
Confidence            5799999999999999999999999999999999876443221111110  000123445666666666653        


Q ss_pred             -----eCCeEEEEEcCCcceeeeeecCCCCCEEEE-EEccCCCEEEEEeCCCcEEEEEcCCCceE
Q 001352          956 -----HETHLAIYEAEELTCLKQWFPISSVPISQA-TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1014 (1093)
Q Consensus       956 -----~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~-~fs~dg~~l~t~~~dg~v~vwd~~~~~~~ 1014 (1093)
                           .++.|++||..+++.+..+..+|...|.++ +|+|||.+|++|+ |++|+||++.+++..
T Consensus       371 ~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          371 SCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             EEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence                 235799999999999998888898899887 6999999999875 889999999988654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.1e-33  Score=313.32  Aligned_cols=307  Identities=16%  Similarity=0.168  Sum_probs=243.3

Q ss_pred             EEeCCCCeeeeeeecccccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec-CCCE
Q 001352          560 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTL  637 (1093)
Q Consensus       560 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~  637 (1093)
                      +|+.........+.+|.   ..|.+++|+|++ +++++|+.||.|++||+.+++....+...++...|.+++|+| ++++
T Consensus        57 ~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  133 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPFD---RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ  133 (383)
T ss_dssp             HHHHTTCEEEEEECCCS---SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred             cccccccceEEeccCCC---CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence            34455666777777777   899999999998 899999999999999999999888887655567799999999 7899


Q ss_pred             EEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceeccee
Q 001352          638 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  717 (1093)
Q Consensus       638 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  717 (1093)
                      |++++.|+.|++||+.+. .+..+..                                                      
T Consensus       134 l~s~~~d~~i~iwd~~~~-~~~~~~~------------------------------------------------------  158 (383)
T 3ei3_B          134 LFVSSIRGATTLRDFSGS-VIQVFAK------------------------------------------------------  158 (383)
T ss_dssp             EEEEETTTEEEEEETTSC-EEEEEEC------------------------------------------------------
T ss_pred             EEEEeCCCEEEEEECCCC-ceEEEec------------------------------------------------------
Confidence            999999999999998732 1100000                                                      


Q ss_pred             eccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccC
Q 001352          718 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT  797 (1093)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  797 (1093)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (383)
T 3ei3_B          159 --------------------------------------------------------------------------------  158 (383)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCC-EEEEEeCCCeEEEEEcC
Q 001352          798 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNAR  875 (1093)
Q Consensus       798 ~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~dg~i~iwd~~  875 (1093)
                       ..++...|.+++|+|++++|++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.||.|++||+.
T Consensus       159 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~  235 (383)
T 3ei3_B          159 -TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLR  235 (383)
T ss_dssp             -CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGG
T ss_pred             -cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCC
Confidence             001556788899999999999988 689999998 5778888999999999999999 777 99999999999999999


Q ss_pred             C----cceeeecccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeec--CCCccc-------CCCCce
Q 001352          876 S----SEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMT-------LAPSET  941 (1093)
Q Consensus       876 ~----~~~~~~l~~h~~~V~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~-------~~~~v~  941 (1093)
                      +    +.++..+ +|...|.+++|+| ++++|++++.|+.|++||+.+++.........  ...+..       ....+.
T Consensus       236 ~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  314 (383)
T 3ei3_B          236 NIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLI  314 (383)
T ss_dssp             GCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred             CCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCce
Confidence            8    5566666 6999999999999 99999999999999999999866433211110  001111       002334


Q ss_pred             EEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001352          942 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus       942 ~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
                      .++|+|||++ ..+.|+.|++||+.+++++..+... |...+..++|+|||++|++++ ||.|++||+.+
T Consensus       315 ~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          315 VAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            4666666666 2357899999999999998885533 467788889999999999997 99999999975

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.4e-32  Score=311.36  Aligned_cols=296  Identities=17%  Similarity=0.228  Sum_probs=245.4

Q ss_pred             ccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCE
Q 001352          332 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  411 (1093)
Q Consensus       332 ~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~  411 (1093)
                      .+|.+.+.+..+++++.. +++++.||.|++||+.+++.....                  ...|...|.+++|+|++++
T Consensus        88 ~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~~~~  148 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHDGSF  148 (401)
T ss_dssp             TTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTTSSE
T ss_pred             CCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCCCCE
Confidence            367666555444444454 566778999999999999877542                  2238899999999999999


Q ss_pred             EEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC-CCceeEEeecCCCCeE
Q 001352          412 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGAPVY  490 (1093)
Q Consensus       412 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~~~~~~~~h~~~v~  490 (1093)
                      |++|+.||.|++||+.+++.+.   .+.+|...|.+++|+  ++  ++++++.||.|++||+. .+..+..+.+|...|.
T Consensus       149 l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~  221 (401)
T 4aez_A          149 LSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC  221 (401)
T ss_dssp             EEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred             EEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCee
Confidence            9999999999999999987555   677999999999994  45  79999999999999999 5677888999999999


Q ss_pred             EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352          491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  570 (1093)
Q Consensus       491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~  570 (1093)
                      +++|++  ++.+|++++.||.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+.
T Consensus       222 ~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~~  298 (401)
T 4aez_A          222 GLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARVN  298 (401)
T ss_dssp             EEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEEE
T ss_pred             EEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEEE
Confidence            999966  6789999999999999999999888899899999999999998765555432 1237789999999999988


Q ss_pred             eeecccccCCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352          571 TYQGLQLQHNSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  648 (1093)
Q Consensus       571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  648 (1093)
                      .+..+    ..+.+++|+|++++++++  +.||.|++||+.+++.........+...|.+++|+|++++|++++.||.|+
T Consensus       299 ~~~~~----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~  374 (401)
T 4aez_A          299 TVDAG----SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLK  374 (401)
T ss_dssp             EEECS----SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEE
T ss_pred             EEeCC----CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            88642    589999999999999994  489999999999987766654444456799999999999999999999999


Q ss_pred             EEEcCCCceeee
Q 001352          649 ILETPESNSVDA  660 (1093)
Q Consensus       649 iw~~~~~~~~~~  660 (1093)
                      +|++.+++.+..
T Consensus       375 iw~~~~~~~~~~  386 (401)
T 4aez_A          375 FWRVYDGDHVKR  386 (401)
T ss_dssp             EEECCC------
T ss_pred             EEECCCCccccc
Confidence            999998866544

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.8e-32  Score=310.20  Aligned_cols=289  Identities=16%  Similarity=0.256  Sum_probs=244.1

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  416 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~  416 (1093)
                      ..+.++||+++  +||+|. |++|+|||+.+|+.+....                 +.+|...|++|+|+|||++||+|+
T Consensus       107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasgs  166 (420)
T 4gga_A          107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT  166 (420)
T ss_dssp             TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred             cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEEE
Confidence            57889999875  588875 8999999999998876422                 557889999999999999999999


Q ss_pred             cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-ceeEEeecCCCCeEEeeec
Q 001352          417 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH  495 (1093)
Q Consensus       417 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~  495 (1093)
                      .|++|+|||+.+++.++   .+.+|...+.+++++  +.  ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus       167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~  239 (420)
T 4gga_A          167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA  239 (420)
T ss_dssp             TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence            99999999999987655   678999999998886  45  7999999999999998865 5567889999999999985


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccCCCEE-EEEecCCCCceeEEEEeCCCCeeee
Q 001352          496 AKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKR  570 (1093)
Q Consensus       496 ~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l-~~~~~~~~~~~~i~iwd~~~~~~~~  570 (1093)
                      +  ++.++++++.||.+++|+....+.    ......+...|.+++|+|++..+ ++++.  ..++.|++||+.+++...
T Consensus       240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~  315 (420)
T 4gga_A          240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS  315 (420)
T ss_dssp             T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred             C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence            4  668999999999999999987653    45667788899999999976654 44433  237789999999999998


Q ss_pred             eeecccccCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352          571 TYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  648 (1093)
Q Consensus       571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  648 (1093)
                      .+..+.    .+.++.|+|+++.+++++  .|+.|+|||+.+++++..+..|  ...|.+++|+|+|++|++++.|++|+
T Consensus       316 ~~~~~~----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH--~~~V~~l~~spdg~~l~S~s~D~tvr  389 (420)
T 4gga_A          316 AVDAHS----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLR  389 (420)
T ss_dssp             EEECSS----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEE
T ss_pred             eecccc----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEE
Confidence            887654    789999999999998865  7999999999999999999866  45699999999999999999999999


Q ss_pred             EEEcCCCceeeecc
Q 001352          649 ILETPESNSVDAAG  662 (1093)
Q Consensus       649 iw~~~~~~~~~~~~  662 (1093)
                      +|++.+..+.....
T Consensus       390 iWdv~~~~~~~~~~  403 (420)
T 4gga_A          390 LWRCFELDPARRRE  403 (420)
T ss_dssp             EECCSCSSCC----
T ss_pred             EEECCCCCccchhh
Confidence            99998765544443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.2e-33  Score=311.84  Aligned_cols=298  Identities=11%  Similarity=0.124  Sum_probs=230.6

Q ss_pred             CceeeeecCCCceEEEEEccC-------CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCC
Q 001352          337 SPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  409 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg  409 (1093)
                      +|+|++|+|||+ +||+|+.+       +.|++|++..+.......+         .......+.+|...|.+++++  +
T Consensus        16 PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~---------~~~~~~~l~~~~~~v~s~~~~--~   83 (365)
T 4h5i_A           16 PAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF---------HILSEFALEDNDDSPTAIDAS--K   83 (365)
T ss_dssp             CEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE---------EEEEEEECCTTSCCCCEEEEE--T
T ss_pred             CEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeee---------eeeeEEEccCCCCceEEEEeC--C
Confidence            899999999998 68888653       3599999987654321111         111223377899999888764  5


Q ss_pred             CEEEEE-----------EcCCEEEEEEccCCCcccc-eEE-----eccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          410 SLLGVA-----------YSKHIVQLYAYHGGSDARQ-QLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       410 ~~las~-----------~~d~~i~iwd~~~~~~~~~-~~~-----~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      ..+++|           +.|+++++|++.++..... ...     ...+...+.+++|||||+.+.+++++.|++|+|||
T Consensus        84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd  163 (365)
T 4h5i_A           84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIID  163 (365)
T ss_dssp             TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEE
T ss_pred             CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeE
Confidence            566665           3567899999887643221 111     12345568999999999965556777899999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEEEEccCCCEEEEEec
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCGT  550 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~d~~~l~~~~~  550 (1093)
                      +.+++++..+. |...|.+++|+|  ||.++++++.+ .+++|+..++.....  ...+...+.+++|+|+++++++++.
T Consensus       164 ~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~  239 (365)
T 4h5i_A          164 PSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL  239 (365)
T ss_dssp             TTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence            99999999886 778899999954  77899998855 566666666665543  3456678999999999999999988


Q ss_pred             CCCCceeEEEEeCCCCee----eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-ecCCCCCC
Q 001352          551 SKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLPE  625 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~  625 (1093)
                      ++.....+++|+...+..    ...+.+|.   ..|.+++|+|+|++|++|+.|++|+|||+.+++++..+ ..|  ...
T Consensus       240 d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~~  314 (365)
T 4h5i_A          240 KKGKGIVLTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SFA  314 (365)
T ss_dssp             SSSCCEEEEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SSC
T ss_pred             CCcceeEEeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cCC
Confidence            766566789999877654    23455555   88999999999999999999999999999999998876 444  456


Q ss_pred             CceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352          626 NPRICFNKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       626 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      |++++|+|||++||+++.|++|+||++...
T Consensus       315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          315 ITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999999999999999999999999999754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2e-32  Score=297.54  Aligned_cols=250  Identities=13%  Similarity=0.167  Sum_probs=210.5

Q ss_pred             hhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCC--ceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          330 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       330 ~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      .+.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++  +.+..                   +.+|.++|.+++|+|
T Consensus         4 ~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~-------------------l~gH~~~V~~v~~s~   63 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDWAH   63 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEE-------------------ECCCSSCEEEEEECC
T ss_pred             eccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEE-------------------EccccCCeEEEEecC
Confidence            4679999999999999999 5999999999999999754  33333                   779999999999987


Q ss_pred             C--CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEEEECCCCce--eEE
Q 001352          408 D--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR--TYS  481 (1093)
Q Consensus       408 d--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~~--~~~  481 (1093)
                      +  +++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+  +.  +|++++.|++|++||+.++..  ...
T Consensus        64 ~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~  140 (297)
T 2pm7_B           64 PKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPII  140 (297)
T ss_dssp             GGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEE
T ss_pred             CCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeee
Confidence            4  899999999999999999987522 23357789999999999998  77  899999999999999987642  467


Q ss_pred             eecCCCCeEEeeecccC-----------CccEEEEEecCCeEEEEEcCCCC----ceEEecCCCCceEEEEEccCC---C
Q 001352          482 FEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG---R  543 (1093)
Q Consensus       482 ~~~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~d~---~  543 (1093)
                      +.+|...|.+++|+|..           ++.+|++|+.|++|++||++...    ....+.+|...|.+++|+|++   .
T Consensus       141 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~  220 (297)
T 2pm7_B          141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS  220 (297)
T ss_dssp             EECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred             eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCce
Confidence            78999999999998752           35799999999999999998766    445678899999999999995   7


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCee---eeee--ecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001352          544 RLFSCGTSKEGESFLVEWNESEGAI---KRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  609 (1093)
Q Consensus       544 ~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~--~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~  609 (1093)
                      +|++++.    ++.|++||+.++..   ...+  ..+   ...|.+++|+|++++|++++.||.|++|+..
T Consensus       221 ~las~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          221 YMASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKF---PDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEEET----TSCEEEEEESSTTSCCEEEESSSSCC---SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEEEEC----CCcEEEEEeCCCCCccceeeeecccC---CCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            8999886    66799999887431   1222  233   3789999999999999999999999999976

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.7e-34  Score=322.61  Aligned_cols=288  Identities=12%  Similarity=0.059  Sum_probs=225.6

Q ss_pred             ccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCC--ceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCC
Q 001352          332 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  409 (1093)
Q Consensus       332 ~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg  409 (1093)
                      ..|.+.|++++|+|||+ +||+|+.|+.|+|||+.++  +.+..                   +.+|...|.+++|+|++
T Consensus         8 ~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~   67 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPKS   67 (377)
T ss_dssp             EECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTTT
T ss_pred             ecCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCCC
Confidence            34667999999999998 5899999999999999987  33332                   67899999999999999


Q ss_pred             CEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc---eeEEeec-C
Q 001352          410 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEG-H  485 (1093)
Q Consensus       410 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~---~~~~~~~-h  485 (1093)
                      ++|++++.|++|++||+.+++.......+.+|...|.+++|+|+++  +|++++.|+.|++||+.+++   ....+.+ |
T Consensus        68 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h  145 (377)
T 3dwl_C           68 NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPL  145 (377)
T ss_dssp             CCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSC
T ss_pred             CEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeeccc
Confidence            9999999999999999999873444456778999999999999999  79999999999999999987   4778887 9


Q ss_pred             CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC------------------CceEEecCCCCceEEEEEccCCCEEEE
Q 001352          486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL------------------GARVDYDAPGLGCTRMAYSANGRRLFS  547 (1093)
Q Consensus       486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~------------------~~~~~~~~~~~~v~~~~~s~d~~~l~~  547 (1093)
                      ...|.+++|++  ++.+|++++.||.|++||+...                  .....+ .+...|.+++|+|++++|++
T Consensus       146 ~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~  222 (377)
T 3dwl_C          146 RSTILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAY  222 (377)
T ss_dssp             CSCEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEE
T ss_pred             CCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEE
Confidence            99999999965  6689999999999999998632                  233344 77888999999999999999


Q ss_pred             EecCCCCceeEEEEeCCCCee----eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------
Q 001352          548 CGTSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ-----------  612 (1093)
Q Consensus       548 ~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------  612 (1093)
                      ++.    ++.|++||+.+++.    +..+.+|.   ..|.+++|+|+++++++++.++.+ +|+.....           
T Consensus       223 ~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  294 (377)
T 3dwl_C          223 AGH----DSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGT  294 (377)
T ss_dssp             EET----TTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCC
T ss_pred             EeC----CCcEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccc
Confidence            986    67799999999987    77888877   899999999999988888766655 66654211           


Q ss_pred             ----------------------------eEEEEec-----------CCCCCCCceEEEecC-CC---EEEEEECCCeEEE
Q 001352          613 ----------------------------LLTTIDA-----------GGGLPENPRICFNKN-GT---LLAVIANENRIKI  649 (1093)
Q Consensus       613 ----------------------------~~~~~~~-----------~~~~~~v~~v~~s~~-~~---~l~~~~~dg~i~i  649 (1093)
                                                  .......           ..+...|.++++.+. +.   .+++++.||.|++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~i  374 (377)
T 3dwl_C          295 SKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVL  374 (377)
T ss_dssp             CCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred             cccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEE
Confidence                                        0000000           014456888886653 33   6999999999999


Q ss_pred             EEc
Q 001352          650 LET  652 (1093)
Q Consensus       650 w~~  652 (1093)
                      ||+
T Consensus       375 Wdl  377 (377)
T 3dwl_C          375 WTL  377 (377)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.4e-32  Score=311.74  Aligned_cols=357  Identities=17%  Similarity=0.216  Sum_probs=239.9

Q ss_pred             cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-CCCEEEEEEcCCEEEEEEccCCCcccc
Q 001352          356 NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQ  434 (1093)
Q Consensus       356 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-dg~~las~~~d~~i~iwd~~~~~~~~~  434 (1093)
                      .++.+++|++.+++....                   +.+|.+.|.+++|+| ++++||+|+.||.|++||+.+++....
T Consensus        21 ~~~~~~v~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~   81 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDV-------------------ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY   81 (408)
T ss_dssp             HHHHHHHHTEEECTTEEE-------------------CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC
T ss_pred             ccCcceeeccccCcceee-------------------eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence            346677888777665543                   678999999999999 999999999999999999998876553


Q ss_pred             eEEe----------ccccccEEEEEeeC-CCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEE
Q 001352          435 QLEI----------DAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI  503 (1093)
Q Consensus       435 ~~~~----------~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  503 (1093)
                      ....          .+|...|.+++|+| ++.  ++++++.|+.|++||+.+++.+..+. +...+.++++.+..     
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~-----  153 (408)
T 4a11_B           82 YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVS-----  153 (408)
T ss_dssp             EEECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSC-----
T ss_pred             EeccccccccccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCC-----
Confidence            3211          25999999999999 555  79999999999999999998887776 66667766664432     


Q ss_pred             EEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeE
Q 001352          504 FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVS  583 (1093)
Q Consensus       504 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~  583 (1093)
                                                          +++.++++++.    ++.|++||+.+++.+..+.+|.   ..|.
T Consensus       154 ------------------------------------~~~~~~~~~~~----~~~v~~~d~~~~~~~~~~~~~~---~~v~  190 (408)
T 4a11_B          154 ------------------------------------TKHCLVAVGTR----GPKVQLCDLKSGSCSHILQGHR---QEIL  190 (408)
T ss_dssp             ------------------------------------SSCCEEEEEES----SSSEEEEESSSSCCCEEECCCC---SCEE
T ss_pred             ------------------------------------CCCcEEEEEcC----CCeEEEEeCCCcceeeeecCCC---CcEE
Confidence                                                13334444443    3346666666666666666666   8899


Q ss_pred             EEEEcCCCCE-EEEEeCCCcEEEEECCCCc-eEEEEec-------------CCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352          584 VVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQ-LLTTIDA-------------GGGLPENPRICFNKNGTLLAVIANENRIK  648 (1093)
Q Consensus       584 ~v~~~~~~~~-l~~~~~dg~i~iwd~~~~~-~~~~~~~-------------~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  648 (1093)
                      +++|+|++++ +++++.||.|++||+.++. .+..+..             ..+...|.+++|+|++++|++++.||.|+
T Consensus       191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  270 (408)
T 4a11_B          191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR  270 (408)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence            9999999985 8899999999999998776 3444321             23345689999999999999999999999


Q ss_pred             EEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccc
Q 001352          649 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL  728 (1093)
Q Consensus       649 iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~  728 (1093)
                      +|++.++........+....                                                            
T Consensus       271 vwd~~~~~~~~~~~~~~~~~------------------------------------------------------------  290 (408)
T 4a11_B          271 LWNSSNGENTLVNYGKVCNN------------------------------------------------------------  290 (408)
T ss_dssp             EEETTTCCBCCCCCCCCCCC------------------------------------------------------------
T ss_pred             EEECCCCccceecccccccc------------------------------------------------------------
Confidence            99998764322111000000                                                            


Q ss_pred             cCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeE
Q 001352          729 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC  808 (1093)
Q Consensus       729 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  808 (1093)
                                                                                              ........
T Consensus       291 ------------------------------------------------------------------------~~~~~~~~  298 (408)
T 4a11_B          291 ------------------------------------------------------------------------SKKGLKFT  298 (408)
T ss_dssp             ------------------------------------------------------------------------CSSCCCCE
T ss_pred             ------------------------------------------------------------------------ccccceeE
Confidence                                                                                    00001111


Q ss_pred             EEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccC
Q 001352          809 FALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK  888 (1093)
Q Consensus       809 l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~  888 (1093)
                      ......+.+++++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+..
T Consensus       299 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~  377 (408)
T 4a11_B          299 VSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTT  377 (408)
T ss_dssp             ECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC------------
T ss_pred             EecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEe
Confidence            2223345566666689999999999999999999999999999999 899999999999999999999887765554332


Q ss_pred             CeEEEEEeC-CCCEEEEEeCCCcEEEEeCCC
Q 001352          889 RVTGLVFSD-ALNILVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       889 ~V~~l~~s~-dg~~l~s~s~dg~i~iwd~~~  918 (1093)
                      .   ..+.+ +...+.+.+.++.+++|+...
T Consensus       378 ~---~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          378 K---SQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             -------------------------------
T ss_pred             c---cccccccceeecccCccCceeecCCcc
Confidence            2   22333 334566777899999998754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.6e-32  Score=329.63  Aligned_cols=211  Identities=18%  Similarity=0.303  Sum_probs=183.6

Q ss_pred             EeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-----ceeEEeecCCCCeEEeeecccCCccEEEEEecCCe
Q 001352          437 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK  511 (1093)
Q Consensus       437 ~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~  511 (1093)
                      .+.+|.+.|++++|++++.. +|+||+.|++|++||+.++     .....+.+|...|.+++|++  ++.+|++|+.||+
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~Dg~  453 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSWDGE  453 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSE
T ss_pred             hcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeCCCc
Confidence            57799999999999998654 8999999999999998763     45678899999999999955  6789999999999


Q ss_pred             EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCC
Q 001352          512 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK  591 (1093)
Q Consensus       512 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~  591 (1093)
                      |++||+.++.....+..|...|.+++|+|++++|++++.    ++.|++||...............|...|.+++|+|++
T Consensus       454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  529 (694)
T 3dm0_A          454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT  529 (694)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred             EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence            999999999888899999999999999999999999987    6679999987665444433333344889999999986


Q ss_pred             --CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCc
Q 001352          592 --DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN  656 (1093)
Q Consensus       592 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~  656 (1093)
                        ..+++++.|++|++||+.+++....+..|.  ..|.+++|+|++++|++++.||.|++||+.+++
T Consensus       530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK  594 (694)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred             CcceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence              579999999999999999999988887664  469999999999999999999999999987653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.3e-32  Score=310.57  Aligned_cols=296  Identities=16%  Similarity=0.151  Sum_probs=250.7

Q ss_pred             eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC------ceEEecCCCCceEEEEEccC----C---CEE
Q 001352          479 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYDAPGLGCTRMAYSAN----G---RRL  545 (1093)
Q Consensus       479 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~v~~~~~s~d----~---~~l  545 (1093)
                      ...+.+|...|++++|++    .+|++++.||.|++||+....      ....+..+...|.+++|+|+    +   ++|
T Consensus         9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            456789999999999965    599999999999999999988      67788889999999999999    9   999


Q ss_pred             EEEecCCCCceeEEEEeCCCCee-----eeeeeccccc--CCCeEEEEEc----CCCCE-EEEEeCCCcEEEEECCC---
Q 001352          546 FSCGTSKEGESFLVEWNESEGAI-----KRTYQGLQLQ--HNSVSVVHFD----TAKDQ-ILAAGDDHVIKIWDMNK---  610 (1093)
Q Consensus       546 ~~~~~~~~~~~~i~iwd~~~~~~-----~~~~~~~~~~--~~~v~~v~~~----~~~~~-l~~~~~dg~i~iwd~~~---  610 (1093)
                      ++++.    ++.|++||+.+++.     ...+..|..+  ...|.+++|+    |++++ +++++.||.|++||+.+   
T Consensus        85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence            99886    66799999998887     7777777322  3789999999    99999 99999999999999998   


Q ss_pred             ---CceEE-----EEec-----CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCC
Q 001352          611 ---VQLLT-----TIDA-----GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS  677 (1093)
Q Consensus       611 ---~~~~~-----~~~~-----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~  677 (1093)
                         ++.+.     .+..     ..+...+.+++|+|++ ++++++.||.|++||+.+.+.+..+..              
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------  225 (397)
T 1sq9_A          161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES--------------  225 (397)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC--------------
T ss_pred             ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec--------------
Confidence               66665     6643     3344568999999999 999999999999999875422211100              


Q ss_pred             ceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccc
Q 001352          678 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG  757 (1093)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg  757 (1093)
                                                                                                      
T Consensus       226 --------------------------------------------------------------------------------  225 (397)
T 1sq9_A          226 --------------------------------------------------------------------------------  225 (397)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCC---CCCeeEEEEccCCCEEEEEe-C---CeEEEEE
Q 001352          758 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS---QEAVPCFALSKNDAYLFSAS-G---GVISLYI  830 (1093)
Q Consensus       758 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~l~~s~dg~~la~~~-d---g~i~iwd  830 (1093)
                                                             .  .+|   ...+.+++|+|++++|++++ +   +.|++||
T Consensus       226 ---------------------------------------~--~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d  264 (397)
T 1sq9_A          226 ---------------------------------------Q--HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE  264 (397)
T ss_dssp             ---------------------------------------C--C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred             ---------------------------------------c--ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEE
Confidence                                                   0  014   66788999999999999887 6   7999999


Q ss_pred             ccCceeEEEECC-------------CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecc------cc-----
Q 001352          831 VMTFKTILTIMP-------------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------GH-----  886 (1093)
Q Consensus       831 ~~~~~~~~~~~~-------------~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~------~h-----  886 (1093)
                      +.+++.+..+..             |...|.+++|+| ++++|++++.||.|++||+.+++.+..+.      +|     
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  343 (397)
T 1sq9_A          265 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL  343 (397)
T ss_dssp             TTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred             CCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhh
Confidence            999999999988             999999999999 89999999999999999999999999998      88     


Q ss_pred             ----------cCCeEEEEEeCCC----------CEEEEEeCCCcEEEEeCCCC
Q 001352          887 ----------SKRVTGLVFSDAL----------NILVSSGGDAQIFVWDVDGW  919 (1093)
Q Consensus       887 ----------~~~V~~l~~s~dg----------~~l~s~s~dg~i~iwd~~~~  919 (1093)
                                ...|++++|+|++          ++|++++.||.|++|++.++
T Consensus       344 ~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          344 AVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             CBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence                      9999999999998          79999999999999999875

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-33  Score=311.25  Aligned_cols=314  Identities=11%  Similarity=0.034  Sum_probs=246.0

Q ss_pred             CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEE
Q 001352          335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  414 (1093)
Q Consensus       335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las  414 (1093)
                      ...|.+++|||||+ ++|+++.|++|+  |...++.                      +.+|...|.+++|+|+|     
T Consensus        15 ~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg-----   64 (588)
T 2j04_A           15 EDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE-----   64 (588)
T ss_dssp             SSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC-----
T ss_pred             hccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC-----
Confidence            45999999999998 699999999999  7555542                      45799999999999999     


Q ss_pred             EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC-----Ce
Q 001352          415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-----PV  489 (1093)
Q Consensus       415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~-----~v  489 (1093)
                        .++.+.+|+.+....+    .+ +|...|.+++|||||+  .|++++.||.|++||.++  ++..+. |..     .|
T Consensus        65 --~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv  132 (588)
T 2j04_A           65 --FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTY  132 (588)
T ss_dssp             --CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCE
T ss_pred             --CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccE
Confidence              4555555554432211    12 5688999999999999  799999999999999544  677777 765     49


Q ss_pred             EEeeecccCCccEEEEEecCCeEEEEEcCCCCc-------eEEe----cCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352          490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-------RVDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  558 (1093)
Q Consensus       490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~----~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i  558 (1093)
                      .+++|+|  ||++|++|+.||+|++||+..+..       ...+    .+|...|.+++|+|||  +++++.    ++.|
T Consensus       133 ~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tV  204 (588)
T 2j04_A          133 HCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSV  204 (588)
T ss_dssp             EEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCE
T ss_pred             EEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeE
Confidence            9999954  778999999999999999998753       3454    5567799999999999  666654    6779


Q ss_pred             EEEeCCCCeee---eeee-cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEE--e
Q 001352          559 VEWNESEGAIK---RTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF--N  632 (1093)
Q Consensus       559 ~iwd~~~~~~~---~~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~--s  632 (1093)
                      ++||+.++...   +++. +|.   ..|.+++|+  ++.+++++ +++|++||+.+++.......  +...+..++|  +
T Consensus       205 rlWd~~~~~~~~~~~tL~~~h~---~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s  276 (588)
T 2j04_A          205 FSMTVSASSHQPVSRMIQNASR---RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHE  276 (588)
T ss_dssp             EEECCCSSSSCCCEEEEECCCS---SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTC
T ss_pred             EEEECCCCccccceeeeccccc---CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeC
Confidence            99999887743   4553 554   789999999  58888887 69999999998877444433  4567999999  9


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccce
Q 001352          633 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  712 (1093)
Q Consensus       633 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  712 (1093)
                      |++..+++++.+|+ ++|....                +++                      +||+..+++.  |++++
T Consensus       277 ~d~~~La~a~edG~-klw~~d~----------------~~~----------------------spd~~l~a~~--d~~v~  315 (588)
T 2j04_A          277 KESTILLMSNKTSY-KVLLEDE----------------LHV----------------------TADNIIAPYL--EKKFK  315 (588)
T ss_dssp             SSCEEEEECSSCEE-EEEESSS----------------EEE----------------------ECCCSSHHHH--HHHHH
T ss_pred             CCCCEEEEEcCCCC-EEEeecc----------------EEE----------------------CCCceEEEEc--CCEEE
Confidence            99999999999999 9999871                223                      4777777775  89999


Q ss_pred             ecceeeccCccccccccCccccccceEEEEeecCCceEEEeec
Q 001352          713 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS  755 (1093)
Q Consensus       713 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~  755 (1093)
                      +|+.....      +.  ...+...|.+++|+|||+.+++++.
T Consensus       316 lW~~~g~~------l~--~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          316 KWSTIWNE------FN--NYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             HTTTTTTS------SS--SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             EEECCCCc------ee--eeccceEEEEEEECCCCCEEEEEEe
Confidence            99974322      11  1113567999999999998877764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.9e-32  Score=295.24  Aligned_cols=252  Identities=17%  Similarity=0.299  Sum_probs=213.3

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV  470 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v  470 (1093)
                      +.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++.. .....+.+|.++|++++|+++  ++  +|++|+.|++|++
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i   81 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI   81 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence            678999999999999999999999999999999975421 233478899999999999864  77  8999999999999


Q ss_pred             EECCCCc--eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccC-----
Q 001352          471 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN-----  541 (1093)
Q Consensus       471 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~d-----  541 (1093)
                      ||+.+++  .+..+.+|...|.+++|+|..++.+|++++.||.|++||++....  ...+..|...|.+++|+|+     
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence            9999874  567788899999999998875578999999999999999987642  4567788889999999997     


Q ss_pred             --------CCEEEEEecCCCCceeEEEEeCCCCe----eeeeeecccccCCCeEEEEEcCCC---CEEEEEeCCCcEEEE
Q 001352          542 --------GRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIW  606 (1093)
Q Consensus       542 --------~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~v~~~~~~---~~l~~~~~dg~i~iw  606 (1093)
                              +++|++++.    ++.|++||+.++.    ....+.+|.   ..|.+++|+|++   .+|++++.|++|++|
T Consensus       162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~iW  234 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCIIW  234 (297)
T ss_dssp             --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC---CceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence                    578999886    6679999998765    556777777   899999999984   789999999999999


Q ss_pred             ECCCCc--e-EEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352          607 DMNKVQ--L-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  654 (1093)
Q Consensus       607 d~~~~~--~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  654 (1093)
                      |+.++.  . ...+....+...|.+++|+|+|++|++++.|+.|++|+...
T Consensus       235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            998753  1 22332233445689999999999999999999999999763

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=316.00  Aligned_cols=330  Identities=10%  Similarity=0.037  Sum_probs=248.0

Q ss_pred             CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001352          529 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  608 (1093)
Q Consensus       529 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~  608 (1093)
                      -...|.+++|+|||+++|+++.    |++|+  |...++   .+.+|.   ..|.+++|+|+|       .++.+.+|+.
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~----D~TV~--d~~~~~---~l~gh~---~~v~~V~FsPdg-------~~~~~~~~~~   74 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFP----DISIG--QPKYAK---DINCNS---KNLFHVKEFPLE-------FENKLDFELA   74 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSS----SEEEE--EECCCS---CCSSBG---GGTEEEEEECCC-------CCCTTTTSCC
T ss_pred             hhccEEEEEECCCCCEEEEEcC----Cceee--cccccc---eecCCC---ccEEEEEECCCC-------CcceEEEEeC
Confidence            3467899999999999999986    77788  655554   446776   899999999998       4555555554


Q ss_pred             CCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCc
Q 001352          609 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS  688 (1093)
Q Consensus       609 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  688 (1093)
                      +   ....+.... ...|.+++|||+|.+||+++.||.+++|+...  .+..+. |...+                    
T Consensus        75 ~---~~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~--------------------  127 (588)
T 2j04_A           75 Q---QNGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL--------------------  127 (588)
T ss_dssp             C---SSCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS--------------------
T ss_pred             C---CceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc--------------------
Confidence            3   222232222 45699999999999999999999999999543  222211 11110                    


Q ss_pred             eEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcc
Q 001352          689 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND  768 (1093)
Q Consensus       689 ~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~  768 (1093)
                                                                   ....+.+++|||||++|++++.||.+++|++....
T Consensus       128 ---------------------------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~  162 (588)
T 2j04_A          128 ---------------------------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS  162 (588)
T ss_dssp             ---------------------------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred             ---------------------------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence                                                         13358899999999999999999999999876431


Q ss_pred             cCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCcee---EEEE-CCCC
Q 001352          769 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI-MPPS  844 (1093)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~---~~~~-~~~~  844 (1093)
                      ...         ++.      ..+........+|...|.+++|+||| +++++.|++|++||+.++..   .+++ .+|.
T Consensus       163 l~~---------~~~------i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~  226 (588)
T 2j04_A          163 ENT---------PEF------YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASR  226 (588)
T ss_dssp             TTC---------CCC------EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred             ccc---------ccc------eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence            100         000      00122221223488999999999999 55555689999999988773   3566 4788


Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEE--eCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001352          845 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--SDALNILVSSGGDAQIFVWDVDGWGIQ  922 (1093)
Q Consensus       845 ~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~--s~dg~~l~s~s~dg~i~iwd~~~~~~~  922 (1093)
                      ..|.+++|+   ++.||+++ +++|++||+.+++......+|.+.|..++|  +||+..|++++.||+ ++|..+.    
T Consensus       227 ~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~----  297 (588)
T 2j04_A          227 RKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE----  297 (588)
T ss_dssp             SCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS----
T ss_pred             CcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc----
Confidence            899999998   37889887 699999999988774444489999999999  999999999999999 9999872    


Q ss_pred             eeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEe
Q 001352          923 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF  998 (1093)
Q Consensus       923 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~  998 (1093)
                                          ++|+||+..++.. |+++++|+...+. +.. +.+ ...|.+++|||||+.+|+++
T Consensus       298 --------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~-~~~-~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          298 --------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNN-YET-TLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             --------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSS-SCC-EEEEEEEEECTTSSEEEEEE
T ss_pred             --------------------EEECCCceEEEEc-CCEEEEEECCCCc-eee-ecc-ceEEEEEEECCCCCEEEEEE
Confidence                                5599999988875 9999999986554 332 333 67799999999999999886

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8.5e-32  Score=304.19  Aligned_cols=290  Identities=12%  Similarity=0.099  Sum_probs=246.5

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +..|..+|.+++|+|++++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++  ++++++.|+.|++||
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence            44599999999999999999999999999999999875 113336779999999999999999  899999999999999


Q ss_pred             CCCCceeEE--eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccCCCEEE
Q 001352          473 AVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLF  546 (1093)
Q Consensus       473 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l~  546 (1093)
                      +.+++....  +..|...|.+++|++  ++.+|++++.||.|++||++....    ......+...|.+++|+|++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  158 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA  158 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence            999876544  467999999999965  668999999999999999998774    223356688999999999999999


Q ss_pred             EEecCCCCceeEEEEeC------------------CCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001352          547 SCGTSKEGESFLVEWNE------------------SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  608 (1093)
Q Consensus       547 ~~~~~~~~~~~i~iwd~------------------~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~  608 (1093)
                      +++.    ++.|++||+                  .+++.+..+.+|.   ..+.+++|+|+++++++++.||.|++||+
T Consensus       159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  231 (372)
T 1k8k_C          159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADA  231 (372)
T ss_dssp             EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCC---CeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            9986    667999995                  4677888887776   89999999999999999999999999999


Q ss_pred             CCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC--Cce--e--------------------------
Q 001352          609 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE--SNS--V--------------------------  658 (1093)
Q Consensus       609 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~--~~~--~--------------------------  658 (1093)
                      .+++.+..+..+.  ..+.+++|+|++++++++ .|+.|++|++.+  +..  .                          
T Consensus       232 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
T 1k8k_C          232 DKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK  308 (372)
T ss_dssp             GGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred             CCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence            9999999988663  468999999999988887 899999999987  310  0                          


Q ss_pred             ----------eec-ccccccceeeeecCCCceeeeeccCCceEecCCCCCCC---ccceeecccccceecceee
Q 001352          659 ----------DAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV---KPEISVEAENKSEVEKPLF  718 (1093)
Q Consensus       659 ----------~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~---~~l~s~~~d~~i~~w~~~~  718 (1093)
                                ..+ .+|...|+++++.                     .++|   +++++++.||.|++|++..
T Consensus       309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~---------------------~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          309 ASSEGSAAAGAGLDSLHKNSVSQISVL---------------------SGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             C---------CCCSSSSSSCEEEEEEE---------------------ESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cccccCccccccccccccCCcceeEEe---------------------cCCCcceeeEEEecCCCceEEEEecC
Confidence                      222 4777888888765                     3566   8999999999999999764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=9e-31  Score=288.52  Aligned_cols=282  Identities=16%  Similarity=0.270  Sum_probs=236.8

Q ss_pred             ceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc
Q 001352          338 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  417 (1093)
Q Consensus       338 V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~  417 (1093)
                      .++++||+++  +||+|. |++|+|||+.+|+++....                 +.+|...|.+++|+|++++||+|+.
T Consensus        28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~~V~~v~~~~~~~~l~sgs~   87 (318)
T 4ggc_A           28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGTS   87 (318)
T ss_dssp             CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCeEEEEEECCCCCEEEEEEC
Confidence            5789999997  578774 8999999999999876532                 5578999999999999999999999


Q ss_pred             CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-ceeEEeecCCCCeEEeeecc
Q 001352          418 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHA  496 (1093)
Q Consensus       418 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~  496 (1093)
                      |++|++||+++++.++   .+.+|...+.++++.  +.  .+++++.++.+++|+..++ ..+..+.+|...+..+.+.+
T Consensus        88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (318)
T 4ggc_A           88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  160 (318)
T ss_dssp             TSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             CCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence            9999999999987655   677999988876665  45  7999999999999998876 45677889999999999854


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeee
Q 001352          497 KENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  572 (1093)
Q Consensus       497 ~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  572 (1093)
                        ++.++++++.||.|++||+.+++.    ......+...+.+++++|++..++.... +..++.|++||...+......
T Consensus       161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~  237 (318)
T 4ggc_A          161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV  237 (318)
T ss_dssp             --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred             --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence              667999999999999999987653    3455667778999999998776553322 123778999999988776665


Q ss_pred             ecccccCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001352          573 QGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  650 (1093)
Q Consensus       573 ~~~~~~~~~v~~v~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  650 (1093)
                      ...    ..+..+.|+|+++.+++++  .|+.|++||+.+++++..+..|  ...|.+++|+|+|++|++++.||+|++|
T Consensus       238 ~~~----~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH--~~~V~~l~~spdg~~l~S~s~D~~v~iW  311 (318)
T 4ggc_A          238 DAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLW  311 (318)
T ss_dssp             ECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             cce----eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence            443    5799999999999988755  7999999999999999999866  4569999999999999999999999999


Q ss_pred             EcCCC
Q 001352          651 ETPES  655 (1093)
Q Consensus       651 ~~~~~  655 (1093)
                      |+.+.
T Consensus       312 d~~~~  316 (318)
T 4ggc_A          312 RCFEL  316 (318)
T ss_dssp             CCSCC
T ss_pred             ECCCC
Confidence            98754

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.2e-31  Score=302.24  Aligned_cols=293  Identities=17%  Similarity=0.223  Sum_probs=245.5

Q ss_pred             eecCCCCCeEEEEECCC----CCEEEEEEcCCEEEEEEccCCCcccceEEec--cccccEEEEEeeCC----CCcEEEEE
Q 001352          392 LVRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAP----CKQISVIT  461 (1093)
Q Consensus       392 ~~~~h~~~V~~v~~s~d----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d----~~~l~l~s  461 (1093)
                      +..+|..+|.+++|+|+    ...+++++.++.|++||+.+++.+.......  .|...|.+++|+|+    +.  +|++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~   90 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV   90 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence            36689999999999984    4566677777799999999887665443332  26788999999999    55  7999


Q ss_pred             EcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCCceEEEEE
Q 001352          462 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAY  538 (1093)
Q Consensus       462 ~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~  538 (1093)
                      |+.||.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+   ..+...|.+++|
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  169 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY  169 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred             ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence            999999999999999999999999999999999652 5579999999999999999998888877   678889999999


Q ss_pred             ccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeec-------------------------ccccCCCeEEEEEcCCCCE
Q 001352          539 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------------------LQLQHNSVSVVHFDTAKDQ  593 (1093)
Q Consensus       539 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~v~~v~~~~~~~~  593 (1093)
                      +|+++++++++.    ++.|++||+.+++....+..                         ...+...|.+++|+  +++
T Consensus       170 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  243 (366)
T 3k26_A          170 DLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL  243 (366)
T ss_dssp             CTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred             CCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence            999999999986    66799999998876654443                         00133889999998  679


Q ss_pred             EEEEeCCCcEEEEECCCCce--------------EEEEecCCCCCCCceEEEecC--CCEEEEEECCCeEEEEEcCCCce
Q 001352          594 ILAAGDDHVIKIWDMNKVQL--------------LTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESNS  657 (1093)
Q Consensus       594 l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iw~~~~~~~  657 (1093)
                      +++++.||.|++||+.++..              +..+..+  ...|.+++|+|+  +++|++++.||.|++|++.+++.
T Consensus       244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~  321 (366)
T 3k26_A          244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP  321 (366)
T ss_dssp             EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred             EEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence            99999999999999988754              5555544  346899999999  99999999999999999998754


Q ss_pred             e----eecccc--cccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceeccee
Q 001352          658 V----DAAGVL--SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  717 (1093)
Q Consensus       658 ~----~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  717 (1093)
                      .    ..+..|  ...|.+++|+                      |+++++++++.||.|++||+.
T Consensus       322 ~~~~~~~~~~~~~~~~v~~~~~s----------------------~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          322 HKAKCTTLTHHKCGAAIRQTSFS----------------------RDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             GGCEEEEECCTTCCSCEEEEEEC----------------------TTSSEEEEEETTSEEEEEEC-
T ss_pred             ccccceEEcccccCCceEEEEeC----------------------CCCCeEEEEeCCCEEEEEEec
Confidence            3    356666  6888888886                      788999999999999999964

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3e-32  Score=298.91  Aligned_cols=253  Identities=15%  Similarity=0.201  Sum_probs=205.5

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-  407 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-  407 (1093)
                      ..+.+|++.|++++|+|+|+ +||+|+.|++|+|||+.++......                 .+.+|.+.|.+++|+| 
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~~-----------------~l~gH~~~V~~v~~~~~   68 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILIA-----------------DLRGHEGPVWQVAWAHP   68 (316)
T ss_dssp             -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEECCG
T ss_pred             eecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEEE-----------------EEcCCCccEEEEEeCCC
Confidence            45779999999999999998 5999999999999999887532211                 1678999999999987 


Q ss_pred             -CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEEEECCCCce---eEE
Q 001352          408 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---TYS  481 (1093)
Q Consensus       408 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~~---~~~  481 (1093)
                       ++++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+  +.  +|++|+.|++|++||+.++..   ...
T Consensus        69 ~~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~  145 (316)
T 3bg1_A           69 MYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKI  145 (316)
T ss_dssp             GGSSCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred             CCCCEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeee
Confidence             4899999999999999999987422 23367899999999999998  66  799999999999999987642   355


Q ss_pred             eecCCCCeEEeeecccC---------------CccEEEEEecCCeEEEEEcCCCC---ceEEecCCCCceEEEEEccCC-
Q 001352          482 FEGHGAPVYSLCPHAKE---------------NIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSANG-  542 (1093)
Q Consensus       482 ~~~h~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~s~d~-  542 (1093)
                      +.+|...|.+++|+|..               ++.+|++++.|+.|++||++...   ....+..|...|.+++|+|++ 
T Consensus       146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~  225 (316)
T 3bg1_A          146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG  225 (316)
T ss_dssp             TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred             eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence            67899999999997652               14689999999999999997553   445677888999999999987 


Q ss_pred             ---CEEEEEecCCCCceeEEEEeCCCCe----eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001352          543 ---RRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  609 (1093)
Q Consensus       543 ---~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~  609 (1093)
                         ++|++++.    ++.|++|++.+..    ....+..|.   ..|.+++|+|++++|++++.||+|++|+..
T Consensus       226 ~~~~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          226 LPTSTIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFN---DVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CSCCEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CCCceEEEEcC----CCeEEEEEccCccccchhhhhhhcCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence               78999886    7789999987631    223444555   889999999999999999999999999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.4e-31  Score=310.74  Aligned_cols=299  Identities=13%  Similarity=0.208  Sum_probs=232.6

Q ss_pred             CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeeccccccee-eeeeecCCC------------CCe
Q 001352          334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF-KTALVRDPG------------VSV  400 (1093)
Q Consensus       334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~------------~~V  400 (1093)
                      |.+.|++++|+|+|+ +||+|+.||.|+|||+.+++......         ...+ ....+.+|.            ..|
T Consensus        27 ~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~---------~~~~~~~~~~~~h~~~~~~~~~~~~~~~V   96 (447)
T 3dw8_B           27 EADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHS---------RGEYNVYSTFQSHEPEFDYLKSLEIEEKI   96 (447)
T ss_dssp             GGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCC---------CCCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred             ccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCccc---------ccceeEecccccccccccccccccccCce
Confidence            567999999999998 59999999999999999876311000         0000 011266788            889


Q ss_pred             EEEEECCCC--CEEEEEEcCCEEEEEEccCCCccc------------------------------------ceEE-eccc
Q 001352          401 NRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSDAR------------------------------------QQLE-IDAH  441 (1093)
Q Consensus       401 ~~v~~s~dg--~~las~~~d~~i~iwd~~~~~~~~------------------------------------~~~~-~~~h  441 (1093)
                      .+++|+|++  .+|++++.|++|++||+.++....                                    .... ..+|
T Consensus        97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  176 (447)
T 3dw8_B           97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH  176 (447)
T ss_dssp             CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred             EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence            999999998  899999999999999998743210                                    0011 3689


Q ss_pred             cccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC-CceeE-------EeecCCCCeEEeeecccCCc-cEEEEEecCCeE
Q 001352          442 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTY-------SFEGHGAPVYSLCPHAKENI-HFIFSISVDGKI  512 (1093)
Q Consensus       442 ~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~-------~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i  512 (1093)
                      ...|.+++|+|+++  +|++| .|+.|++||+.+ ++.+.       .+.+|...|.+++|+|  ++ .+|++++.||.|
T Consensus       177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTI  251 (447)
T ss_dssp             SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred             CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeE
Confidence            99999999999999  78888 799999999984 44444       2568999999999965  44 799999999999


Q ss_pred             EEEEcCCCCc----eEEecCCCC------------ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-Ceeeeeeecc
Q 001352          513 KAWLYDSLGA----RVDYDAPGL------------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGL  575 (1093)
Q Consensus       513 ~vwd~~~~~~----~~~~~~~~~------------~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~  575 (1093)
                      ++||+++...    ...+..+..            .|.+++|+|+|++|++++.     +.|++||+.+ ++.+..+.+|
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~  326 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVETYQVH  326 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCCEESC
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccceeecc
Confidence            9999998876    677777765            8999999999999998863     5699999997 8888888887


Q ss_pred             cccCC------------CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-----------------------
Q 001352          576 QLQHN------------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------  620 (1093)
Q Consensus       576 ~~~~~------------~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------  620 (1093)
                      .....            .+..++|+|++++|++|+.||.|++||+.+++.+......                       
T Consensus       327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (447)
T 3dw8_B          327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD  406 (447)
T ss_dssp             GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred             ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence            62111            1334899999999999999999999999998876422111                       


Q ss_pred             -------CCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352          621 -------GGLPENPRICFNKNGTLLAVIANENRIKILETP  653 (1093)
Q Consensus       621 -------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  653 (1093)
                             .....|..++|+|++++||+++.++ +.+|..+
T Consensus       407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence                   1123578899999999999998865 7777654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.7e-31  Score=298.16  Aligned_cols=292  Identities=13%  Similarity=0.165  Sum_probs=240.7

Q ss_pred             eecCCCCCeEEEEECCCCCEEE-EEEc---CCEEEEEEccCCCcccceEEeccccccEEEEEeeCC---CCcEEEEEEcC
Q 001352          392 LVRDPGVSVNRVVWSPDGSLLG-VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGD  464 (1093)
Q Consensus       392 ~~~~h~~~V~~v~~s~dg~~la-s~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~~  464 (1093)
                      ++.+|...|.+++|+|++..++ +|+.   |+.|++||+.+++....  ...+|...|.+++|+|+   ++  ++++++.
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~   88 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF   88 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence            3667999999999999997655 5554   89999999998864332  23379999999999999   57  7999999


Q ss_pred             CCcEEEEECCCCc-eeEEeecCCCCeEEeeecc----cCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCC----ceE
Q 001352          465 DKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHA----KENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL----GCT  534 (1093)
Q Consensus       465 d~~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~----~v~  534 (1093)
                      ||.|++||+.+++ .+..+.+|...|.+++|.+    ++++.+|++++.||.|++||+.... ....+..+..    .+.
T Consensus        89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  168 (357)
T 3i2n_A           89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW  168 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred             CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence            9999999999998 8899999999999997643    5678899999999999999999887 5666655443    788


Q ss_pred             EEE----EccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC---CCCEEEEEeCCCcEEEEE
Q 001352          535 RMA----YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT---AKDQILAAGDDHVIKIWD  607 (1093)
Q Consensus       535 ~~~----~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~---~~~~l~~~~~dg~i~iwd  607 (1093)
                      +++    |+|+++++++++.    ++.|++||+.+++.... ..+.   ..+.+++|+|   +++++++++.||.|++||
T Consensus       169 ~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d  240 (357)
T 3i2n_A          169 TVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVFD  240 (357)
T ss_dssp             EEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEEE
T ss_pred             EEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEEe
Confidence            888    7899999999986    67799999999987544 3444   7899999999   899999999999999999


Q ss_pred             CCCCceEEEEe---cCCCCCCCceEEEecCCC-EEEEEECCCeEEEEEcCCC-------------------ceeeecccc
Q 001352          608 MNKVQLLTTID---AGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES-------------------NSVDAAGVL  664 (1093)
Q Consensus       608 ~~~~~~~~~~~---~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~-------------------~~~~~~~~~  664 (1093)
                      +.+++....+.   ...+...|.+++|+|+++ ++++++.||.|++|++...                   ..+..+.+|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  320 (357)
T 3i2n_A          241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS  320 (357)
T ss_dssp             EEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC
T ss_pred             CcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC
Confidence            98876654443   112345699999999998 8999999999999998754                   245566777


Q ss_pred             cccceeeeecCCCceeeeeccCCceEecCCCCCCCccce-eecccccceeccee
Q 001352          665 SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI-SVEAENKSEVEKPL  717 (1093)
Q Consensus       665 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-s~~~d~~i~~w~~~  717 (1093)
                      ...|.+++|+                      |++++++ +++.|+.+++|++.
T Consensus       321 ~~~v~~~~~s----------------------~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          321 TQPISSLDWS----------------------PDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             SSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEEC
T ss_pred             CCCeeEEEEc----------------------CCCCeEEEEecCCCcEEEEECC
Confidence            8888888886                      7788888 89999999999976

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-30  Score=287.24  Aligned_cols=281  Identities=15%  Similarity=0.169  Sum_probs=246.3

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +.+|.+.|.+++| |++++|++++.||.|++||+.+++...   .+..|...|.+++|+|+++  ++++++.|+.|++|+
T Consensus        14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~~   87 (313)
T 3odt_A           14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGVP   87 (313)
T ss_dssp             ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred             hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEEE
Confidence            7899999999999 999999999999999999998875443   5678999999999999999  899999999999999


Q ss_pred             CCCC---ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCCEEEEE
Q 001352          473 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSC  548 (1093)
Q Consensus       473 ~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~  548 (1093)
                      +...   +.+..+.+|...|.+++|    ++.++++++.||.|++||  .......+..+...+.++++.| ++++++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  161 (313)
T 3odt_A           88 LFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA  161 (313)
T ss_dssp             TTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred             eeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence            8754   667888999999999998    346999999999999999  5667778888999999999988 99999999


Q ss_pred             ecCCCCceeEEEEeCCCCeeeeeeec-ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCc
Q 001352          549 GTSKEGESFLVEWNESEGAIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  627 (1093)
Q Consensus       549 ~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  627 (1093)
                      +.    ++.|++||  .++....+.. +.   ..+.+++|+|++. +++++.||.|++||+.+++.+..+..+.  ..+.
T Consensus       162 ~~----d~~i~i~d--~~~~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~  229 (313)
T 3odt_A          162 SA----DKTIKLWQ--NDKVIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFVY  229 (313)
T ss_dssp             ET----TSCEEEEE--TTEEEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS--SCEE
T ss_pred             EC----CCCEEEEe--cCceEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC--ceEE
Confidence            86    66799999  5566666666 44   8899999999987 9999999999999999999999888654  4699


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001352          628 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  707 (1093)
Q Consensus       628 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~  707 (1093)
                      +++|+|++ .+++++.||.|++||+.+++....+..+...+.+++++                      |+++ +++++.
T Consensus       230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~-~~~~~~  285 (313)
T 3odt_A          230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM----------------------SNGD-IIVGSS  285 (313)
T ss_dssp             EEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC----------------------TTSC-EEEEET
T ss_pred             EEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc----------------------cCCC-EEEEeC
Confidence            99999999 58999999999999999999999999999999999886                      5666 667899


Q ss_pred             cccceecceeeccC
Q 001352          708 ENKSEVEKPLFARP  721 (1093)
Q Consensus       708 d~~i~~w~~~~~~~  721 (1093)
                      |+.+++|++.....
T Consensus       286 dg~i~iw~~~~~~~  299 (313)
T 3odt_A          286 DNLVRIFSQEKSRW  299 (313)
T ss_dssp             TSCEEEEESCGGGC
T ss_pred             CCcEEEEeCCCCce
Confidence            99999999875443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.3e-30  Score=299.06  Aligned_cols=282  Identities=19%  Similarity=0.252  Sum_probs=242.3

Q ss_pred             CeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce
Q 001352          399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  478 (1093)
Q Consensus       399 ~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~  478 (1093)
                      .++.|+||++ .+||+|. |++|+|||..+|+.... ..+.+|...|++++|+|||+  +|++|+.||+|+|||+.++++
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR  181 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE-EEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence            4677999986 4777775 89999999999976543 24567889999999999999  899999999999999999999


Q ss_pred             eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001352          479 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  557 (1093)
Q Consensus       479 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~  557 (1093)
                      +..+.+|...+.++++    ++.++++|+.|+.+++||...... ...+..|...+..+.++|+++++++++.    ++.
T Consensus       182 ~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~----D~~  253 (420)
T 4gga_A          182 LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNL  253 (420)
T ss_dssp             EEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred             EEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----ccc
Confidence            9999999999999877    346999999999999999987554 4577889999999999999999999986    667


Q ss_pred             EEEEeCCCCee----eeeeecccccCCCeEEEEEcCCCCEE-EE--EeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352          558 LVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQI-LA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  630 (1093)
Q Consensus       558 i~iwd~~~~~~----~~~~~~~~~~~~~v~~v~~~~~~~~l-~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  630 (1093)
                      +++|+..+++.    +.....+.   ..|.+++|+|.+..+ ++  |+.|++|++||+.+++....+..+.   .+.++.
T Consensus       254 v~i~~~~~~~~~~~~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~  327 (420)
T 4gga_A          254 VNVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSIL  327 (420)
T ss_dssp             EEEEESSCCSSCSCCSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEEEEE
T ss_pred             ceEEeeccccccceeeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---ceeeee
Confidence            99999987753    33444444   889999999986544 43  4579999999999999999887653   488999


Q ss_pred             EecCCCEEEEEE--CCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352          631 FNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  708 (1093)
Q Consensus       631 ~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  708 (1093)
                      |+|+++.+++++  .|+.|++||+.+++.+..+.+|...|.+++|+                      |+|+++++++.|
T Consensus       328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D  385 (420)
T 4gga_A          328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAAD  385 (420)
T ss_dssp             EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred             ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecC
Confidence            999999998876  68999999999999999999999999999996                      789999999999


Q ss_pred             ccceecceeeccC
Q 001352          709 NKSEVEKPLFARP  721 (1093)
Q Consensus       709 ~~i~~w~~~~~~~  721 (1093)
                      ++|++|++....+
T Consensus       386 ~tvriWdv~~~~~  398 (420)
T 4gga_A          386 ETLRLWRCFELDP  398 (420)
T ss_dssp             TEEEEECCSCSSC
T ss_pred             CeEEEEECCCCCc
Confidence            9999999764433

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1e-30  Score=301.46  Aligned_cols=276  Identities=21%  Similarity=0.316  Sum_probs=239.4

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  412 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l  412 (1093)
                      +|...|.|++|  |++ ++++|+.||.|++||+.+++.+..                   +.+|...|.+++|  ++++|
T Consensus       131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l  186 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVI  186 (435)
T ss_dssp             SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEE
T ss_pred             CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEE
Confidence            56778998887  777 589999999999999999988765                   7789999999999  88999


Q ss_pred             EEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee---EEeecCCCCe
Q 001352          413 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGHGAPV  489 (1093)
Q Consensus       413 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~---~~~~~h~~~v  489 (1093)
                      ++|+.||+|++||+.+++.+.   .+.+|...|.+++|++  .  .+++|+.||.|++||+.+++..   ..+.+|...|
T Consensus       187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v  259 (435)
T 1p22_A          187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  259 (435)
T ss_dssp             EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred             EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence            999999999999999987554   6789999999999974  4  7999999999999999988766   6778999999


Q ss_pred             EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeee
Q 001352          490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  569 (1093)
Q Consensus       490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~  569 (1093)
                      .++++    ++.++++++.||.|++||+++.+....+..+...+.++.+  +++++++++.    ++.|++||+.+++.+
T Consensus       260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~  329 (435)
T 1p22_A          260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACL  329 (435)
T ss_dssp             EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEE
T ss_pred             EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEE
Confidence            99988    4579999999999999999999999999999999999988  5789999886    667999999999999


Q ss_pred             eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------eEEEEecCCCCCCCceEEEecCCCEEEE
Q 001352          570 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------LLTTIDAGGGLPENPRICFNKNGTLLAV  640 (1093)
Q Consensus       570 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~~~~l~~  640 (1093)
                      ..+.+|.   ..|.+++|  ++.++++|+.||.|++||+.++.         .+..+..+  ...|.+++|  ++.+|++
T Consensus       330 ~~~~~h~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s  400 (435)
T 1p22_A          330 RVLEGHE---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVS  400 (435)
T ss_dssp             EEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEE
T ss_pred             EEEeCCc---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCCEEEE
Confidence            9999887   88999998  67899999999999999998766         67777655  446899999  7889999


Q ss_pred             EECCCeEEEEEcCCCcee
Q 001352          641 IANENRIKILETPESNSV  658 (1093)
Q Consensus       641 ~~~dg~i~iw~~~~~~~~  658 (1093)
                      ++.||.|++|++.+....
T Consensus       401 ~s~Dg~i~iwd~~~~~~~  418 (435)
T 1p22_A          401 SSHDDTILIWDFLNDPAA  418 (435)
T ss_dssp             CCSSSEEEEEC-------
T ss_pred             EeCCCEEEEEECCCCCCc
Confidence            999999999999876443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.5e-31  Score=293.63  Aligned_cols=285  Identities=8%  Similarity=0.052  Sum_probs=240.7

Q ss_pred             hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352          331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  410 (1093)
Q Consensus       331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~  410 (1093)
                      ..+|.+.|++++|+|+++ +|++|+.||.|+|||+.++......                ..+.+|...|.+++|+|+++
T Consensus         7 ~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~~   69 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDNTD   69 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEESSS
T ss_pred             ccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCCCC
Confidence            347999999999999998 5899999999999999988721110                01446999999999999999


Q ss_pred             -EEEEEEcCCEEEEEEc-cCCCcccceEEecc--ccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC---------Cc
Q 001352          411 -LLGVAYSKHIVQLYAY-HGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---------GS  477 (1093)
Q Consensus       411 -~las~~~d~~i~iwd~-~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---------~~  477 (1093)
                       +|++|+.|+.|++||+ .+++.    ..+.+  |...|.+++|+| +.  ++++++.|+.|++||+.+         ++
T Consensus        70 ~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  142 (342)
T 1yfq_A           70 LQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNL  142 (342)
T ss_dssp             EEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred             cEEEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCC
Confidence             9999999999999999 87653    36778  999999999999 77  899999999999999988         77


Q ss_pred             eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC-CC--ceEEecCCCCceEEEEEcc-CCCEEEEEecCCC
Q 001352          478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LG--ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE  553 (1093)
Q Consensus       478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~--~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~  553 (1093)
                      ++..+. |...|.+++|++  ++  +++++.||.|++||++. ..  .......+...+.+++|+| +++++++++.   
T Consensus       143 ~~~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---  214 (342)
T 1yfq_A          143 NSNNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI---  214 (342)
T ss_dssp             CSSSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET---
T ss_pred             eeeEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec---
Confidence            777777 899999999964  43  99999999999999998 44  3345556777899999999 9999999986   


Q ss_pred             CceeEEEEeCCCC------eeeeeeecccc------cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC
Q 001352          554 GESFLVEWNESEG------AIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  621 (1093)
Q Consensus       554 ~~~~i~iwd~~~~------~~~~~~~~~~~------~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  621 (1093)
                       ++.|++|+...+      +....+..|..      +...|.+++|+|++++|++++.||.|++||+.+++.+..+..+.
T Consensus       215 -dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h  293 (342)
T 1yfq_A          215 -DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN  293 (342)
T ss_dssp             -TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred             -CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhccc
Confidence             677999999887      77778887751      12489999999999999999999999999999999988877541


Q ss_pred             CCCCCceEEEecCCCEEEEEECCCe-EEEEE
Q 001352          622 GLPENPRICFNKNGTLLAVIANENR-IKILE  651 (1093)
Q Consensus       622 ~~~~v~~v~~s~~~~~l~~~~~dg~-i~iw~  651 (1093)
                       ...|.+++  |++++|++++.||. .+.+.
T Consensus       294 -~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          294 -EDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             -SSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             -CCCceEec--CCCCeEEEEecCCccccccc
Confidence             24588888  99999999999998 44444

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.2e-32  Score=308.16  Aligned_cols=241  Identities=13%  Similarity=0.107  Sum_probs=198.9

Q ss_pred             CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCC--CcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~--~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      .|.++|.+++|+|||++||+|+.|+.|++||+.++  +.+.   .+.+|...|.+++|+|+++  +|++++.|++|++||
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYE   83 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC-
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence            47789999999999999999999999999999987  4333   5779999999999999998  799999999999999


Q ss_pred             CCCCc---eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecC-CCCceEEEEEccCCCEE
Q 001352          473 AVTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDA-PGLGCTRMAYSANGRRL  545 (1093)
Q Consensus       473 ~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~-~~~~v~~~~~s~d~~~l  545 (1093)
                      +.+++   ....+.+|...|.+++|++  ++.+|++++.|+.|++||++....   ...+.. |...|.+++|+|++++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           84 KRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             -----CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred             cCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence            99987   6778888999999999965  667999999999999999998763   566666 88999999999999999


Q ss_pred             EEEecCCCCceeEEEEeCC------------------CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001352          546 FSCGTSKEGESFLVEWNES------------------EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD  607 (1093)
Q Consensus       546 ~~~~~~~~~~~~i~iwd~~------------------~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd  607 (1093)
                      ++++.    ++.|++||+.                  .++.+..+ +|.   ..|.+++|+|++++|++++.||.|++||
T Consensus       162 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~~~~~d~~i~iwd  233 (377)
T 3dwl_C          162 AAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALAYAGHDSSVTIAY  233 (377)
T ss_dssp             EEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred             EEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            99986    6679999985                  34555556 555   8899999999999999999999999999


Q ss_pred             CCCCce----EEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352          608 MNKVQL----LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  653 (1093)
Q Consensus       608 ~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  653 (1093)
                      +.+++.    +..+..+  ...|.+++|+|++++|++++.++.+ +|+..
T Consensus       234 ~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          234 PSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             ECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            999887    5666655  3468999999999999998877666 66654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.98  E-value=2.4e-31  Score=291.74  Aligned_cols=250  Identities=18%  Similarity=0.319  Sum_probs=205.7

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV  470 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v  470 (1093)
                      +.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++  ++  +|++|+.|++|++
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~i   85 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVII   85 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEEE
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEEE
Confidence            6789999999999999999999999999999999886421 23468899999999999864  67  7999999999999


Q ss_pred             EECCCCc--eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEccC----
Q 001352          471 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN----  541 (1093)
Q Consensus       471 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d----  541 (1093)
                      ||+.+++  .+..+.+|...|.+++|+|..++.+|++++.||.|++||+.....   ...+..|...+.+++|+|+    
T Consensus        86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  165 (316)
T 3bg1_A           86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG  165 (316)
T ss_dssp             ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred             EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCc
Confidence            9999874  567788999999999998876688999999999999999987643   2344567778999999998    


Q ss_pred             -------------CCEEEEEecCCCCceeEEEEeCCCC---eeeeeeecccccCCCeEEEEEcCCC----CEEEEEeCCC
Q 001352          542 -------------GRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDH  601 (1093)
Q Consensus       542 -------------~~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~v~~~~~~----~~l~~~~~dg  601 (1093)
                                   +++|++++.    ++.|++||+..+   +.+..+.+|.   ..|.+++|+|++    ++|++++.||
T Consensus       166 ~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~---~~V~~v~~sp~~~~~~~~las~s~D~  238 (316)
T 3bg1_A          166 SLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHS---DWVRDVAWAPSIGLPTSTIASCSQDG  238 (316)
T ss_dssp             -----CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCS---SCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred             cccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCC---CceEEEEecCCCCCCCceEEEEcCCC
Confidence                         468888875    677999999755   4566777777   899999999986    7899999999


Q ss_pred             cEEEEECCCCc----eEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352          602 VIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  654 (1093)
Q Consensus       602 ~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  654 (1093)
                      +|++|++.+..    ....+..+  ...|.+++|+|++++|++++.|+.|++|+...
T Consensus       239 ~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          239 RVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             eEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            99999987631    11223323  34689999999999999999999999999763

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=1e-30  Score=298.24  Aligned_cols=297  Identities=13%  Similarity=0.170  Sum_probs=241.6

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-CCCEEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVA  415 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-dg~~las~  415 (1093)
                      ....++++|+...++++|+.||.|+|||+.+......               ....+.+|.+.|.+++|+| ++++||+|
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~  100 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASG  100 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence            5667999999877777789999999999966432210               0112678999999999999 99999999


Q ss_pred             EcCCEEEEEEccCCCcc----cceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe--ecCCCCe
Q 001352          416 YSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAPV  489 (1093)
Q Consensus       416 ~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~--~~h~~~v  489 (1093)
                      +.||+|++||+.++...    .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+  .+|...|
T Consensus       101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  179 (402)
T 2aq5_A          101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI  179 (402)
T ss_dssp             ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred             eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence            99999999999987432    233467899999999999999843 7999999999999999999999999  8899999


Q ss_pred             EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCc-eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352          490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  567 (1093)
Q Consensus       490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~-v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~  567 (1093)
                      .+++|++  ++.+|++++.||.|++||+++.+....+ ..+... +.+++|+|++++++++.. +..++.|++||+.+++
T Consensus       180 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          180 YSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHLE  256 (402)
T ss_dssp             EEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBCS
T ss_pred             EEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCcccc
Confidence            9999965  6789999999999999999998888877 566654 899999999999988732 1237889999999876


Q ss_pred             e-eeeeecccccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCce-EEEEecCCCCCCCceEEEecCCCEEEEEECC
Q 001352          568 I-KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANE  644 (1093)
Q Consensus       568 ~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  644 (1093)
                      . +......  +...+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++  .+
T Consensus       257 ~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~  332 (402)
T 2aq5_A          257 EPLSLQELD--TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KC  332 (402)
T ss_dssp             SCSEEEECC--CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GT
T ss_pred             CCceEEecc--CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cc
Confidence            5 3333211  1367999999999999975 55799999999999884 555544444467999999999988764  56


Q ss_pred             CeEEEEEcCCCc
Q 001352          645 NRIKILETPESN  656 (1093)
Q Consensus       645 g~i~iw~~~~~~  656 (1093)
                      +.+++|++.++.
T Consensus       333 ~~~~~~~l~~~~  344 (402)
T 2aq5_A          333 EIARFYKLHERK  344 (402)
T ss_dssp             EEEEEEEEETTE
T ss_pred             eeEEEEEcCCCc
Confidence            799999998753

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.98  E-value=1.2e-30  Score=294.06  Aligned_cols=290  Identities=17%  Similarity=0.200  Sum_probs=237.9

Q ss_pred             HHHhhccCCCCceeeeecCC---CceEEEEEccCCcEEEEecCC-CceeEEeeeeeeecccccceeeeeeecCCCCCeEE
Q 001352          327 VAQTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  402 (1093)
Q Consensus       327 ~~~~l~~h~~~V~~~~~spd---g~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  402 (1093)
                      .++.+.+|.+.|++++|+|+   |+ +|++|+.||.|+|||+.+ +..+..                  .+.+|...|.+
T Consensus        31 ~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~v~~   91 (368)
T 3mmy_A           31 DIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGPVLD   91 (368)
T ss_dssp             CEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSCEEE
T ss_pred             eeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCCEEE
Confidence            34567899999999999999   57 699999999999999998 544321                  15679999999


Q ss_pred             EEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEe--eCCCCcEEEEEEcCCCcEEEEECCCCceeE
Q 001352          403 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTGSRTY  480 (1093)
Q Consensus       403 v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  480 (1093)
                      ++|+|++++|++++.|+.|++||+.+++.+.    +.+|...|.+++|  ++++.  ++++++.|+.|++||+.+++.+.
T Consensus        92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~  165 (368)
T 3mmy_A           92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNPMM  165 (368)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSCSE
T ss_pred             EEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcEEE
Confidence            9999999999999999999999999876443    5579999999999  88888  89999999999999999999999


Q ss_pred             EeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEccCCCE----EEEEecCCCC
Q 001352          481 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRR----LFSCGTSKEG  554 (1093)
Q Consensus       481 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~----l~~~~~~~~~  554 (1093)
                      .+..+. .+.++.+..    ..+++++.++.+++|+++.........  .......++++.++...    +++++.    
T Consensus       166 ~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  236 (368)
T 3mmy_A          166 VLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI----  236 (368)
T ss_dssp             EEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET----
T ss_pred             EEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC----
Confidence            998665 566665532    478999999999999998776554332  23345667777666554    888876    


Q ss_pred             ceeEEEEeCCCC---eeeeeeecccc---------cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC
Q 001352          555 ESFLVEWNESEG---AIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG  622 (1093)
Q Consensus       555 ~~~i~iwd~~~~---~~~~~~~~~~~---------~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  622 (1093)
                      ++.|++||+...   .....+.+|..         +...|.+++|+|++++|++++.||.|++||+.+++.+..+..+  
T Consensus       237 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--  314 (368)
T 3mmy_A          237 EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL--  314 (368)
T ss_dssp             TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC--
T ss_pred             CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC--
Confidence            677999999987   55667776651         0116999999999999999999999999999999999888765  


Q ss_pred             CCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352          623 LPENPRICFNKNGTLLAVIANENRIKILET  652 (1093)
Q Consensus       623 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  652 (1093)
                      ...|.+++|+|+|++|++++.|+..+.|+.
T Consensus       315 ~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          315 DQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             SSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             CCCceEEEECCCCCeEEEEecccccccccc
Confidence            346999999999999999999876555443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=5.3e-30  Score=291.97  Aligned_cols=285  Identities=15%  Similarity=0.155  Sum_probs=241.6

Q ss_pred             cCCCCC--eEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEE
Q 001352          394 RDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  471 (1093)
Q Consensus       394 ~~h~~~--V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  471 (1093)
                      .+|...  +.+++|++  ..+++++.|+.|++||+.+++.....  ...|...|.+++|+|+++  +|++|+.||.|++|
T Consensus        88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw  161 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIY  161 (401)
T ss_dssp             TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred             CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEE
Confidence            345544  55566664  56888889999999999998755421  224899999999999999  89999999999999


Q ss_pred             ECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001352          472 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGT  550 (1093)
Q Consensus       472 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~  550 (1093)
                      |+.+++.+..+.+|...|.+++|    ++.++++++.||.|++||++. ......+..+...|.+++|+|+++++++++.
T Consensus       162 d~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  237 (401)
T 4aez_A          162 DVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN  237 (401)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             ECcCCeEEEEecCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence            99999999999999999999998    346999999999999999994 5556778889999999999999999999986


Q ss_pred             CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE-Ee--CCCcEEEEECCCCceEEEEecCCCCCCCc
Q 001352          551 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AG--DDHVIKIWDMNKVQLLTTIDAGGGLPENP  627 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  627 (1093)
                          ++.|++||+.+++.+..+..|.   ..|.+++|+|++..+++ ++  .|+.|++||+.+++.+..+..+   ..+.
T Consensus       238 ----d~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~  307 (401)
T 4aez_A          238 ----DNVVQIWDARSSIPKFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVT  307 (401)
T ss_dssp             ----TSCEEEEETTCSSEEEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEE
T ss_pred             ----CCeEEEccCCCCCccEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEE
Confidence                6679999999999998888877   89999999998765554 44  7999999999999999888754   3589


Q ss_pred             eEEEecCCCEEEEEE--CCCeEEEEEcCCCceee--ecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccce
Q 001352          628 RICFNKNGTLLAVIA--NENRIKILETPESNSVD--AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI  703 (1093)
Q Consensus       628 ~v~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~  703 (1093)
                      +++|+|+++++++++  .||.|++|++.++....  .+.+|...+.+++++                      |++++++
T Consensus       308 ~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~  365 (401)
T 4aez_A          308 SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS----------------------PDGRILS  365 (401)
T ss_dssp             EEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC----------------------TTSSEEE
T ss_pred             EEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC----------------------CCCCEEE
Confidence            999999999999954  89999999999864443  456888888888886                      7889999


Q ss_pred             eecccccceecceeecc
Q 001352          704 SVEAENKSEVEKPLFAR  720 (1093)
Q Consensus       704 s~~~d~~i~~w~~~~~~  720 (1093)
                      +++.|+.+++|++..+.
T Consensus       366 s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          366 TAASDENLKFWRVYDGD  382 (401)
T ss_dssp             EECTTSEEEEEECCC--
T ss_pred             EEeCCCcEEEEECCCCc
Confidence            99999999999987443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=278.28  Aligned_cols=280  Identities=19%  Similarity=0.240  Sum_probs=237.1

Q ss_pred             eEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352          400 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  479 (1093)
Q Consensus       400 V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  479 (1093)
                      .++|+||+++ +||+| .|++|+|||+.+++.++.. .+.+|...|++++|+|+++  ++++|+.|++|++||+.+++++
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence            5679999987 77776 5899999999999866533 4567889999999999999  8999999999999999999999


Q ss_pred             EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352          480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  558 (1093)
Q Consensus       480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i  558 (1093)
                      ..+.+|...+.++.+    ++..+++++.++.+++|+...... ...+..+...+..+.++++++++++++.    ++.|
T Consensus       103 ~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i  174 (318)
T 4ggc_A          103 RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLV  174 (318)
T ss_dssp             EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred             EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec----Ccce
Confidence            999999999988765    346899999999999999887654 4567888899999999999999999986    6679


Q ss_pred             EEEeCCCCeeeeee-ecccccCCCeEEEEEcCCCCEEE---EEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC
Q 001352          559 VEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQIL---AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  634 (1093)
Q Consensus       559 ~iwd~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~l~---~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  634 (1093)
                      ++||+.+++..... .....+...|.++.++|++..++   +++.++.|++||.............   ..+..++|+|+
T Consensus       175 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~---~~v~~~~~~~~  251 (318)
T 4ggc_A          175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILWSPH  251 (318)
T ss_dssp             EEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS---SCEEEEEEETT
T ss_pred             eEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce---eeeeeeeeccc
Confidence            99999987643221 11222347899999999876543   4668899999999998887776544   34889999999


Q ss_pred             CCEEEEEE--CCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccce
Q 001352          635 GTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  712 (1093)
Q Consensus       635 ~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  712 (1093)
                      +..+++++  .|+.|++||+.+++.+..+.+|...|++++|+                      |+++++++++.|++|+
T Consensus       252 ~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D~~v~  309 (318)
T 4ggc_A          252 YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAADETLR  309 (318)
T ss_dssp             TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETTTEEE
T ss_pred             ccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecCCeEE
Confidence            99888765  68999999999999999999999999999996                      7889999999999999


Q ss_pred             eccee
Q 001352          713 VEKPL  717 (1093)
Q Consensus       713 ~w~~~  717 (1093)
                      +||+.
T Consensus       310 iWd~~  314 (318)
T 4ggc_A          310 LWRCF  314 (318)
T ss_dssp             EECCS
T ss_pred             EEECC
Confidence            99975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=5e-30  Score=297.73  Aligned_cols=253  Identities=14%  Similarity=0.227  Sum_probs=207.7

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCc--------ccceEEecccc------------ccEEEEEeeCCC-
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHV------------GNVNDLAFSAPC-  454 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~--------~~~~~~~~~h~------------~~v~~~~~s~d~-  454 (1093)
                      |.+.|.+++|+|+|++||+|+.||.|+|||+.+++.        ......+.+|.            ..|++++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            678999999999999999999999999999998752        11244677998            889999999998 


Q ss_pred             -CcEEEEEEcCCCcEEEEECCCCcee---------------------------------------EE-eecCCCCeEEee
Q 001352          455 -KQISVITCGDDKTIKVWDAVTGSRT---------------------------------------YS-FEGHGAPVYSLC  493 (1093)
Q Consensus       455 -~~l~l~s~~~d~~i~vwd~~~~~~~---------------------------------------~~-~~~h~~~v~~~~  493 (1093)
                       .  .+++++.|++|++||+.++...                                       .. ..+|...|.+++
T Consensus       107 ~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          107 AA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             SS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             cc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence             5  7999999999999998775432                                       12 367999999999


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEE--------ecCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCC
Q 001352          494 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNES  564 (1093)
Q Consensus       494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~  564 (1093)
                      |++  ++.+|+++ .||.|++||++.......        +..+...|.+++|+|++ +++++++.    ++.|++||+.
T Consensus       185 ~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~  257 (447)
T 3dw8_B          185 INS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDMR  257 (447)
T ss_dssp             ECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEETT
T ss_pred             EcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEECc
Confidence            966  66799998 799999999985443332        45678899999999998 89999986    6679999999


Q ss_pred             CCee----eeeeecccc---------cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEecCCCCCC-----
Q 001352          565 EGAI----KRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPE-----  625 (1093)
Q Consensus       565 ~~~~----~~~~~~~~~---------~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~-----  625 (1093)
                      +++.    ...+.++..         +...|.+++|+|++++|++++. +.|++||+.+ ++.+..+..+.....     
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~  336 (447)
T 3dw8_B          258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL  336 (447)
T ss_dssp             TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred             CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence            9887    677777650         0128999999999999999999 9999999997 888888876643111     


Q ss_pred             --------CceEEEecCCCEEEEEECCCeEEEEEcCCCcee
Q 001352          626 --------NPRICFNKNGTLLAVIANENRIKILETPESNSV  658 (1093)
Q Consensus       626 --------v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  658 (1093)
                              +..++|+|++++|++++.||.|++||+.+++.+
T Consensus       337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence                    234999999999999999999999999988665

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=7.5e-30  Score=285.27  Aligned_cols=263  Identities=10%  Similarity=0.117  Sum_probs=221.0

Q ss_pred             hhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC--
Q 001352          330 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--  407 (1093)
Q Consensus       330 ~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--  407 (1093)
                      .+.+|++.|++++|+|+|+ +||+|+.||.|+|||+.++.......               ..+.+|...|.+++|+|  
T Consensus         6 ~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~~~~~   69 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELS---------------DSWRAHDSSIVAIDWASPE   69 (351)
T ss_dssp             EECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEEE---------------EEEECCSSCEEEEEECCGG
T ss_pred             cCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcceec---------------ceeccCCCcEEEEEEcCCC
Confidence            4679999999999999998 58999999999999999875332111               11668999999999999  


Q ss_pred             CCCEEEEEEcCCEEEEEEccCCCcc------cceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEEEECCCCcee
Q 001352          408 DGSLLGVAYSKHIVQLYAYHGGSDA------RQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSRT  479 (1093)
Q Consensus       408 dg~~las~~~d~~i~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~~~  479 (1093)
                      |+++|++++.|+.|++||+.+++..      .....+.+|...|.+++|+|+  +.  ++++++.|+.|++||+.+++.+
T Consensus        70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~  147 (351)
T 3f3f_A           70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDL  147 (351)
T ss_dssp             GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCT
T ss_pred             CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHh
Confidence            6999999999999999999987431      334467899999999999999  88  8999999999999999998876


Q ss_pred             EEee-------------cCCCCeEEeeeccc-CCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccCC-
Q 001352          480 YSFE-------------GHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG-  542 (1093)
Q Consensus       480 ~~~~-------------~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~d~-  542 (1093)
                      ..+.             .|...+.+++|+|. .++.++++++.++.+.+|+......  ...+..|...|.+++|+|++ 
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~  227 (351)
T 3f3f_A          148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIG  227 (351)
T ss_dssp             TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSS
T ss_pred             ccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCC
Confidence            5443             58889999999764 1357999999999998888777665  55677788899999999998 


Q ss_pred             ---CEEEEEecCCCCceeEEEEeCCCC----------------------------------------------eeeeeee
Q 001352          543 ---RRLFSCGTSKEGESFLVEWNESEG----------------------------------------------AIKRTYQ  573 (1093)
Q Consensus       543 ---~~l~~~~~~~~~~~~i~iwd~~~~----------------------------------------------~~~~~~~  573 (1093)
                         ++|++++.    ++.|++||+.++                                              +.+..+.
T Consensus       228 ~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (351)
T 3f3f_A          228 RWYQLIATGCK----DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD  303 (351)
T ss_dssp             CSSEEEEEEET----TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC
T ss_pred             CcceEEEEEcC----CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence               78999886    667999999875                                              5566666


Q ss_pred             cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001352          574 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  617 (1093)
Q Consensus       574 ~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  617 (1093)
                      +|.   ..|.+++|+|++++|++++.||.|++||+.+++....+
T Consensus       304 ~h~---~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          304 DHN---GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             TTS---SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             ccc---ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            666   89999999999999999999999999999988765544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6e-30  Score=289.79  Aligned_cols=255  Identities=17%  Similarity=0.302  Sum_probs=217.5

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV  470 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v  470 (1093)
                      +.+|.+.|.+++|+|++++||+|+.|+.|+|||+..+. ......+.+|...|++++|+++  ++  +|++++.||.|++
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i   83 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI   83 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence            67899999999999999999999999999999998432 2333467899999999999987  77  8999999999999


Q ss_pred             EECCCCc--eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEcc------
Q 001352          471 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------  540 (1093)
Q Consensus       471 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~------  540 (1093)
                      ||+.+++  .+..+..|...|.+++|++..++.++++++.||.|++||+....  ....+..+...|.+++|+|      
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence            9999997  77888889999999999776447899999999999999998874  4456677888999999999      


Q ss_pred             -------CCCEEEEEecCCCCceeEEEEeCCCCe----eeeeeecccccCCCeEEEEEcCC---CCEEEEEeCCCcEEEE
Q 001352          541 -------NGRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW  606 (1093)
Q Consensus       541 -------d~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~dg~i~iw  606 (1093)
                             ++.++++++.    ++.|++||+.++.    ....+.+|.   ..|.+++|+|+   ++++++++.||.|++|
T Consensus       164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw  236 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW  236 (379)
T ss_dssp             ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence                   6999999986    6679999998764    345566666   89999999999   8999999999999999


Q ss_pred             ECCCCc---eEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCce
Q 001352          607 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS  657 (1093)
Q Consensus       607 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~  657 (1093)
                      |+.++.   .........+...+.+++|+|++++|++++.||.|++|++.....
T Consensus       237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~  290 (379)
T 3jrp_A          237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK  290 (379)
T ss_dssp             EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred             eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence            999875   233333333456789999999999999999999999999985533

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6e-30  Score=289.80  Aligned_cols=260  Identities=13%  Similarity=0.145  Sum_probs=216.0

Q ss_pred             HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCC--ceeEEeeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352          327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  404 (1093)
Q Consensus       327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  404 (1093)
                      ++.++.+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+  +.+..                   +.+|...|.+++
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~   62 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVD   62 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEE-------------------ECCCSSCEEEEE
T ss_pred             ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeeeE-------------------ecCCCCcEEEEE
Confidence            4567899999999999999998 5899999999999999843  33322                   678999999999


Q ss_pred             ECCC--CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEEEECCCCc--e
Q 001352          405 WSPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--R  478 (1093)
Q Consensus       405 ~s~d--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~--~  478 (1093)
                      |+|+  +++|++|+.|+.|++||+.+++. .....+.+|...|.+++|+|+  +.  ++++++.|+.|++||+.++.  .
T Consensus        63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~  139 (379)
T 3jrp_A           63 WAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTS  139 (379)
T ss_dssp             ECCGGGCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCC
T ss_pred             eCCCCCCCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCcee
Confidence            9987  99999999999999999998752 133367789999999999999  88  89999999999999999874  4


Q ss_pred             eEEeecCCCCeEEeeecccC-----------CccEEEEEecCCeEEEEEcCCCCce----EEecCCCCceEEEEEccC--
Q 001352          479 TYSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSAN--  541 (1093)
Q Consensus       479 ~~~~~~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~d--  541 (1093)
                      ...+.+|...|.+++|++..           ++.++++++.||.|++||++.....    ..+..|...|.+++|+|+  
T Consensus       140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  219 (379)
T 3jrp_A          140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  219 (379)
T ss_dssp             EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence            45677899999999997742           5789999999999999999876543    466778889999999999  


Q ss_pred             -CCEEEEEecCCCCceeEEEEeCCCCeee--eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001352          542 -GRRLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL  613 (1093)
Q Consensus       542 -~~~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~  613 (1093)
                       ++++++++.    ++.|++||+.++...  ........+...+.+++|+|++++|++++.||.|++|++..+..
T Consensus       220 ~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~  290 (379)
T 3jrp_A          220 LRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK  290 (379)
T ss_dssp             SSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred             CCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence             899999986    667999999987421  11111112347899999999999999999999999999985543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.6e-29  Score=291.55  Aligned_cols=275  Identities=16%  Similarity=0.241  Sum_probs=238.4

Q ss_pred             cCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEEC
Q 001352          394 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  473 (1093)
Q Consensus       394 ~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~  473 (1093)
                      .+|...|.+++|  ++++|++|+.||.|++||+.+++...   .+.+|...|.+++|  +++  ++++|+.||+|++||+
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence            357788998887  89999999999999999999987554   68899999999999  667  8999999999999999


Q ss_pred             CCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEccCCCEEEEEec
Q 001352          474 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGT  550 (1093)
Q Consensus       474 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~d~~~l~~~~~  550 (1093)
                      .+++.+..+.+|...|.+++|+    +..+++++.||.|++||+.+....   ..+..+...|.++++  +++++++++.
T Consensus       201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~  274 (435)
T 1p22_A          201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG  274 (435)
T ss_dssp             SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred             CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence            9999999999999999999984    358999999999999999987765   567788889999998  7889999886


Q ss_pred             CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352          551 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  630 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  630 (1093)
                          ++.|++||+.+++.+..+.+|.   ..+.++.++  ++++++|+.||.|++||+.+++.+..+..+.  ..|.+++
T Consensus       275 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~  343 (435)
T 1p22_A          275 ----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIR  343 (435)
T ss_dssp             ----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEE
T ss_pred             ----CCeEEEEECCcCcEEEEEcCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEE
Confidence                6779999999999999999887   889999984  6899999999999999999999999987654  4588888


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCCc---------eeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCcc
Q 001352          631 FNKNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP  701 (1093)
Q Consensus       631 ~s~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  701 (1093)
                      |  ++.++++++.||.|++||+.++.         .+..+.+|...|.++++.                        +++
T Consensus       344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------------------------~~~  397 (435)
T 1p22_A          344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EFQ  397 (435)
T ss_dssp             C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SSC
T ss_pred             e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC------------------------CCE
Confidence            8  78999999999999999987654         677778888888777663                        677


Q ss_pred             ceeecccccceecceeecc
Q 001352          702 EISVEAENKSEVEKPLFAR  720 (1093)
Q Consensus       702 l~s~~~d~~i~~w~~~~~~  720 (1093)
                      +++++.||.|++|++....
T Consensus       398 l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          398 IVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             EEECCSSSEEEEEC-----
T ss_pred             EEEEeCCCEEEEEECCCCC
Confidence            9999999999999987543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.2e-29  Score=285.86  Aligned_cols=290  Identities=17%  Similarity=0.152  Sum_probs=238.1

Q ss_pred             ecCCCCCeEEEEECCC---CCEEEEEEcCCEEEEEEccC-CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcE
Q 001352          393 VRDPGVSVNRVVWSPD---GSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  468 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~d---g~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  468 (1093)
                      +.+|.+.|.+++|+|+   |++|++|+.||.|++||+.+ +..+  ...+.+|...|++++|+|+++  +|++++.||.|
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v  110 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--PKAQQMHTGPVLDVCWSDDGS--KVFTASCDKTA  110 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--EEEEEECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--EEEeccccCCEEEEEECcCCC--EEEEEcCCCcE
Confidence            7789999999999999   69999999999999999997 4322  235778999999999999999  89999999999


Q ss_pred             EEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001352          469 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  548 (1093)
Q Consensus       469 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~  548 (1093)
                      ++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.+  ..++++
T Consensus       111 ~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~  186 (368)
T 3mmy_A          111 KMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVA  186 (368)
T ss_dssp             EEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEE
T ss_pred             EEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEE
Confidence            999999998776 5569999999999777788999999999999999999988888777665 555555554  466666


Q ss_pred             ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCE----EEEEeCCCcEEEEECCCC---ceEEEEecCC
Q 001352          549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ----ILAAGDDHVIKIWDMNKV---QLLTTIDAGG  621 (1093)
Q Consensus       549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~~~  621 (1093)
                      +.    ++.+.+|++............. ....+.++.+.++...    +++++.||.|++||+...   .....+..+.
T Consensus       187 ~~----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  261 (368)
T 3mmy_A          187 TA----ERGLIVYQLENQPSEFRRIESP-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR  261 (368)
T ss_dssp             EG----GGCEEEEECSSSCEEEEECCCS-CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred             eC----CCcEEEEEeccccchhhhcccc-ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence            65    5669999998765433222111 1245666666665544    999999999999999987   5566665543


Q ss_pred             CC----------CCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEe
Q 001352          622 GL----------PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV  691 (1093)
Q Consensus       622 ~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  691 (1093)
                      ..          ..|.+++|+|++++|++++.||.|++||+.+++.+..+..|...+.+++|+                 
T Consensus       262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-----------------  324 (368)
T 3mmy_A          262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN-----------------  324 (368)
T ss_dssp             EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC-----------------
T ss_pred             cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC-----------------
Confidence            21          158999999999999999999999999999999999999999999999996                 


Q ss_pred             cCCCCCCCccceeecccccceeccee
Q 001352          692 NEDPKEDVKPEISVEAENKSEVEKPL  717 (1093)
Q Consensus       692 ~~~~s~d~~~l~s~~~d~~i~~w~~~  717 (1093)
                           |+++++++++.|+..+.|++.
T Consensus       325 -----~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          325 -----HNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             -----TTSSCEEEEECCCSTTCGGGC
T ss_pred             -----CCCCeEEEEeccccccccccc
Confidence                 788899999999887777754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=2.9e-29  Score=280.47  Aligned_cols=259  Identities=13%  Similarity=0.206  Sum_probs=217.8

Q ss_pred             eecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcc-cceEEeccccccEEEEEeeC--CCCcEEEEEEcCCCcE
Q 001352          392 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTI  468 (1093)
Q Consensus       392 ~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i  468 (1093)
                      ++.+|.+.|.+++|+|++++||+|+.||.|++||+.++... .....+.+|...|++++|+|  |++  +|++++.||.|
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v   83 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV   83 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence            37799999999999999999999999999999999976532 33446779999999999999  577  89999999999


Q ss_pred             EEEECCCC---------ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec------------
Q 001352          469 KVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------------  527 (1093)
Q Consensus       469 ~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------  527 (1093)
                      ++||+.++         +.+..+.+|...|.+++|++..++.++++++.||.|++||+++......+.            
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            99999987         567888899999999999776337899999999999999998776443221            


Q ss_pred             -CCCCceEEEEEccC---CCEEEEEecCCCCceeEEEEeCCCCee--eeeeecccccCCCeEEEEEcCCC----CEEEEE
Q 001352          528 -APGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAK----DQILAA  597 (1093)
Q Consensus       528 -~~~~~v~~~~~s~d---~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~----~~l~~~  597 (1093)
                       .+...+.+++|+|+   +..+++++.    ++.+.+|+...+..  +..+.+|.   ..|.+++|+|++    ++++++
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~p~~~~~~~~l~s~  236 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHK---SLIRSISWAPSIGRWYQLIATG  236 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCC---SCEEEEEECCCSSCSSEEEEEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCC---cceeEEEECCCCCCcceEEEEE
Confidence             45668999999997   899999876    66788888777765  55666666   899999999998    799999


Q ss_pred             eCCCcEEEEECCCC----------------------------------------------ceEEEEecCCCCCCCceEEE
Q 001352          598 GDDHVIKIWDMNKV----------------------------------------------QLLTTIDAGGGLPENPRICF  631 (1093)
Q Consensus       598 ~~dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~v~~  631 (1093)
                      +.||.|++||+.++                                              +.+..+..+  ...|.+++|
T Consensus       237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~  314 (351)
T 3f3f_A          237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH--NGEVWSVSW  314 (351)
T ss_dssp             ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT--SSCEEEEEE
T ss_pred             cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc--cccEEEEEE
Confidence            99999999999875                                              344445444  456999999


Q ss_pred             ecCCCEEEEEECCCeEEEEEcCCCceeeec
Q 001352          632 NKNGTLLAVIANENRIKILETPESNSVDAA  661 (1093)
Q Consensus       632 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  661 (1093)
                      +|++++|++++.||.|++|++.++..+..+
T Consensus       315 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          315 NLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             CSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             cCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            999999999999999999999987655443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=2.3e-29  Score=280.45  Aligned_cols=285  Identities=10%  Similarity=0.000  Sum_probs=239.0

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      ..+|.+.|.+++|+|++++|++++.|+.|++||+.+++.......+.+|...|.+++|+|+++. ++++++.||.|++||
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD   85 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence            4579999999999999999999999999999999987633333356689999999999999872 388899999999999


Q ss_pred             C-CCCceeEEeec--CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC---------CCceEEecCCCCceEEEEEcc
Q 001352          473 A-VTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------LGARVDYDAPGLGCTRMAYSA  540 (1093)
Q Consensus       473 ~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~s~  540 (1093)
                      + .+++. ..+.+  |...|.+++|++   +.++++++.||.|++||+++         ......+. +...+.+++|+|
T Consensus        86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  160 (342)
T 1yfq_A           86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS  160 (342)
T ss_dssp             SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred             eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence            9 77755 77888  999999999976   57999999999999999987         55554454 777899999999


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCC-Ceee--eeeecccccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----
Q 001352          541 NGRRLFSCGTSKEGESFLVEWNESE-GAIK--RTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV-----  611 (1093)
Q Consensus       541 d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~--~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~i~iwd~~~~-----  611 (1093)
                      ++  +++++.    ++.|++||+.+ +...  .....+.   ..+.+++|+| +++++++++.||.|++|++...     
T Consensus       161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  231 (342)
T 1yfq_A          161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             Cc--EEEEeC----CCeEEEEECCccccccceeeecCCC---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence            88  777765    66799999988 5432  2233333   7899999999 9999999999999999999887     


Q ss_pred             -ceEEEEecCCC-------CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccc-cccceeeeecCCCceeee
Q 001352          612 -QLLTTIDAGGG-------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGA  682 (1093)
Q Consensus       612 -~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~  682 (1093)
                       +....+..+..       ...|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|.+++          
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~----------  301 (342)
T 1yfq_A          232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA----------  301 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE----------
T ss_pred             cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec----------
Confidence             77777776643       336899999999999999999999999999999999888888 88887665          


Q ss_pred             eccCCceEecCCCCCCCccceeeccccc-ceecce
Q 001352          683 GIANGSVSVNEDPKEDVKPEISVEAENK-SEVEKP  716 (1093)
Q Consensus       683 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~-i~~w~~  716 (1093)
                                    ++++++++++.|++ .+.|..
T Consensus       302 --------------~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          302 --------------CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             --------------ECSSEEEEEEECTHHHHCSSS
T ss_pred             --------------CCCCeEEEEecCCcccccccc
Confidence                          25778999999998 666663

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-28  Score=282.96  Aligned_cols=305  Identities=11%  Similarity=-0.006  Sum_probs=234.0

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCc---eeEEeeeeee---eccc---------------------------
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ---KLFIRNFKVW---DIGA---------------------------  383 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~---~~~~~~~~~~---~~~~---------------------------  383 (1093)
                      ++.+++|+|||+ +|+++ .++.|++||+.+|+   .+.......-   ....                           
T Consensus         6 p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            6 PLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             cEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            899999999999 45554 56899999999998   4433211000   0000                           


Q ss_pred             -----ccceeeeeeecCCCCCeEEEEECCCCCEE-EEEEcCCEEEEEEcc--CCCcccceEEeccccccEEEEEeeCCCC
Q 001352          384 -----CSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAFSAPCK  455 (1093)
Q Consensus       384 -----~~~~~~~~~~~~h~~~V~~v~~s~dg~~l-as~~~d~~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~~  455 (1093)
                           ...........+|.+.|.+++|+|+|++| |+++.|+.|++||+.  +++.+..+. ...|...|++++|+|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEECTTSS
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEEcCCCC
Confidence                 00000111134677789999999999996 889999999999999  776655321 136778999999999999


Q ss_pred             cEEEEEEcCCCcEEEEECCCCceeE----EeecCCCCeEEeeeccc-CCccEEEEEecCCeEEEEEcCCCCceEE-ecCC
Q 001352          456 QISVITCGDDKTIKVWDAVTGSRTY----SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGARVD-YDAP  529 (1093)
Q Consensus       456 ~l~l~s~~~d~~i~vwd~~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~  529 (1093)
                        +|++++.|+.|++|++.+++...    .+.+|...|.+++|++. ..+.+|++++.|+.|++||+.+...... ...|
T Consensus       163 --~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h  240 (450)
T 2vdu_B          163 --TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH  240 (450)
T ss_dssp             --EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred             --EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence              89999999999999999887654    78899999999999775 2268999999999999999998887776 5578


Q ss_pred             CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc----------------------ccCCCeEEEEE
Q 001352          530 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----------------------LQHNSVSVVHF  587 (1093)
Q Consensus       530 ~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------------------~~~~~v~~v~~  587 (1093)
                      ...|.+++|+ ++++|++++.    ++.|++||+.+++.+..+..+.                      .....+..++|
T Consensus       241 ~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  315 (450)
T 2vdu_B          241 KHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK  315 (450)
T ss_dssp             SSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred             CCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence            8999999999 9999999986    6789999999999888876431                      12356899999


Q ss_pred             cCCCCEEEEEe-CCCcEEEEEC--CCC---ceEEEEecCCCCCCCceEEEecCCCEEEEEEC------CCeEEEEEcCC
Q 001352          588 DTAKDQILAAG-DDHVIKIWDM--NKV---QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKILETPE  654 (1093)
Q Consensus       588 ~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw~~~~  654 (1093)
                      +|+++++++++ .++.|++|++  .++   +.+..+..+   ..+.+++|+|++.++++++.      +..|.+|.+..
T Consensus       316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          316 SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            99999999998 8999999999  555   566666655   45899999996533333332      45578887653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1e-28  Score=275.33  Aligned_cols=283  Identities=13%  Similarity=0.120  Sum_probs=217.0

Q ss_pred             HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      .+.++.+|.+.|++++|||||+ +||+|+.++ ++|||+.+++.....                     +...+..++++
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~   67 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRML   67 (355)
T ss_dssp             --------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEEC
T ss_pred             CccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEc
Confidence            4456688999999999999998 588888765 789999987665431                     12258889999


Q ss_pred             CCCCEEE-EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-ceeEEeec
Q 001352          407 PDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG  484 (1093)
Q Consensus       407 ~dg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~  484 (1093)
                      +++++++ +++.|++|++||+.+++.+.   .+. |...|.+++|+++.    ++.+ .|+.|++||+.++ +.+..+..
T Consensus        68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~  138 (355)
T 3vu4_A           68 HRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR  138 (355)
T ss_dssp             TTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred             CCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc
Confidence            9998885 56778999999999987655   443 67799999999864    3333 3789999999998 77777665


Q ss_pred             CCCCeEEeeecccCCccEEEE--EecCCeEEEEEcCCCC----------------ceEEecCCCCceEEEEEccCCCEEE
Q 001352          485 HGAPVYSLCPHAKENIHFIFS--ISVDGKIKAWLYDSLG----------------ARVDYDAPGLGCTRMAYSANGRRLF  546 (1093)
Q Consensus       485 h~~~v~~~~~~~~~~~~~l~s--~~~dg~i~vwd~~~~~----------------~~~~~~~~~~~v~~~~~s~d~~~l~  546 (1093)
                         +...+++++    .+++.  |+.||.|++||+.+..                ....+..|...|.+++|+|+|++|+
T Consensus       139 ---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~  211 (355)
T 3vu4_A          139 ---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA  211 (355)
T ss_dssp             ---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE
Confidence               333444543    35555  6899999999998765                1577889999999999999999999


Q ss_pred             EEecCCCCcee-EEEEeCCCCeeeeeee-c-ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--E-----
Q 001352          547 SCGTSKEGESF-LVEWNESEGAIKRTYQ-G-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T-----  616 (1093)
Q Consensus       547 ~~~~~~~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~-----  616 (1093)
                      +++.    ++. |++||+.+++.+..+. + |.   ..|.+++|+|++++|++++.|++|++||+..+....  .     
T Consensus       212 s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~  284 (355)
T 3vu4_A          212 TCSQ----DGTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI  284 (355)
T ss_dssp             EEET----TCSEEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred             EEeC----CCCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence            9986    777 9999999999999998 5 66   899999999999999999999999999997653211  1     


Q ss_pred             -------------EecC-CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352          617 -------------IDAG-GGLPENPRICFNKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       617 -------------~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                                   +... ........++|+++++++++++.||.+++|++..+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence                         0011 11122467999999999999999999999997643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=2.5e-27  Score=269.47  Aligned_cols=280  Identities=11%  Similarity=0.102  Sum_probs=228.3

Q ss_pred             ceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE-EEEEcCCEEEEEEc
Q 001352          348 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAY  426 (1093)
Q Consensus       348 ~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l-as~~~d~~i~iwd~  426 (1093)
                      ++++++++.|+.|++||+.+++.+..                   +.+| ..+.+++|+|+|++| ++++.|+.|++||+
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~   61 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT   61 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence            35899999999999999999987764                   3344 458999999999987 56668999999999


Q ss_pred             cCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEE-EE
Q 001352          427 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FS  505 (1093)
Q Consensus       427 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s  505 (1093)
                      .+++.+.   .+..+. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..+ ..+.+++|++  +++.+ ++
T Consensus        62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~  133 (391)
T 1l0q_A           62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVT  133 (391)
T ss_dssp             TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEE
T ss_pred             CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEE
Confidence            9987554   444444 8999999999994 3466777899999999999998888754 4678888855  55666 78


Q ss_pred             EecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEE
Q 001352          506 ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV  585 (1093)
Q Consensus       506 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v  585 (1093)
                      ++.++.|++||+.+++....+..+ ..+..++|+|+++++++++.   .++.|++||+.+++....+..+    ..+.++
T Consensus       134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~----~~~~~~  205 (391)
T 1l0q_A          134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE----AAPSGI  205 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SEEEEE
T ss_pred             eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC----CCccce
Confidence            888999999999988777766654 45689999999998865432   2667999999999888777643    478999


Q ss_pred             EEcCCCCEEEEEe---CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEE-EEEECCCeEEEEEcCCCceeeec
Q 001352          586 HFDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAA  661 (1093)
Q Consensus       586 ~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~  661 (1093)
                      +|+|+++++++++   .++.|++||+.+++.+..+..+.   .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+
T Consensus       206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence            9999999999987   78999999999999988887653   36889999999987 56678999999999998877766


Q ss_pred             ccccc
Q 001352          662 GVLSD  666 (1093)
Q Consensus       662 ~~~~~  666 (1093)
                      ..+..
T Consensus       283 ~~~~~  287 (391)
T 1l0q_A          283 AVGKN  287 (391)
T ss_dssp             ECSSS
T ss_pred             ECCcC
Confidence            65443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.2e-29  Score=308.45  Aligned_cols=260  Identities=13%  Similarity=0.155  Sum_probs=212.4

Q ss_pred             HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      ..++.+|.+.|++++|+|+|++ +++|+.||.|+|||+.++.....                 ..+.+|.++|.+++|+|
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~   63 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAH   63 (753)
T ss_dssp             ------CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECC
T ss_pred             eeecccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecC
Confidence            4578899999999999999995 89999999999999985432211                 11678999999999999


Q ss_pred             C--CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEEEECCCCc--eeEE
Q 001352          408 D--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTYS  481 (1093)
Q Consensus       408 d--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~--~~~~  481 (1093)
                      +  +++|++|+.||.|++||+.+++. .....+.+|...|++++|+|+  ++  .+++|+.||.|++||+.++.  ....
T Consensus        64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~  140 (753)
T 3jro_A           64 PKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPII  140 (753)
T ss_dssp             TTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeE
Confidence            8  99999999999999999998752 233367789999999999999  88  89999999999999998873  4556


Q ss_pred             eecCCCCeEEeeecccC-----------CccEEEEEecCCeEEEEEcCCCC----ceEEecCCCCceEEEEEccC---CC
Q 001352          482 FEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSAN---GR  543 (1093)
Q Consensus       482 ~~~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~d---~~  543 (1093)
                      +.+|...|.+++|++..           ++.++++|+.||.|++||+++..    ....+..|...|.+++|+|+   ++
T Consensus       141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~  220 (753)
T 3jro_A          141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS  220 (753)
T ss_dssp             EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred             eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence            78899999999997742           57899999999999999998874    34466788999999999999   89


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeee--eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001352          544 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  612 (1093)
Q Consensus       544 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~  612 (1093)
                      ++++++.    ++.|++||+.++...  ........+...|.+++|+|+++++++++.||.|++|++.++.
T Consensus       221 ~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          221 YLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             EEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            9999986    667999999887421  1111112234789999999999999999999999999998644

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=2.4e-28  Score=278.65  Aligned_cols=286  Identities=13%  Similarity=0.143  Sum_probs=233.0

Q ss_pred             CCeEEEEECCCCCEEE-EEEcCCEEEEEEccCCC-cccceEEeccccccEEEEEeeC-CCCcEEEEEEcCCCcEEEEECC
Q 001352          398 VSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAV  474 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~la-s~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~  474 (1093)
                      .....++++|+...++ +++.+|.|+||++.... .......+.+|.+.|++++|+| +++  +|++|+.||+|++||+.
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence            3455689999876554 57889999999996542 2233335779999999999999 777  89999999999999999


Q ss_pred             CC-------ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe--cCCCCceEEEEEccCCCEE
Q 001352          475 TG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRRL  545 (1093)
Q Consensus       475 ~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~s~d~~~l  545 (1093)
                      ++       +.+..+.+|...|.+++|++.. ..+|++++.||.|++||+.+++....+  ..+...|.+++|+|++++|
T Consensus       113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  191 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI  191 (402)
T ss_dssp             TTCCSSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred             CCCCccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence            88       6788999999999999996542 259999999999999999999888888  7889999999999999999


Q ss_pred             EEEecCCCCceeEEEEeCCCCeeeeee-ecccccCCCeEEEEEcCCCCEEEEE---eCCCcEEEEECCCCce-EEEEecC
Q 001352          546 FSCGTSKEGESFLVEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQL-LTTIDAG  620 (1093)
Q Consensus       546 ~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~  620 (1093)
                      ++++.    ++.|++||+++++.+..+ .+|.  ...+.++.|+|++.++++|   +.|+.|++||+.+++. +......
T Consensus       192 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~  265 (402)
T 2aq5_A          192 CTSCR----DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD  265 (402)
T ss_dssp             EEEET----TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred             EEEec----CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence            99986    677999999999999888 6666  2348999999999999998   7999999999998765 3333322


Q ss_pred             CCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCce-eeeccc--ccccceeeeecCCCceeeeeccCCceEecCCCC
Q 001352          621 GGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNS-VDAAGV--LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK  696 (1093)
Q Consensus       621 ~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~-~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s  696 (1093)
                       +...+.+++|+|+++++++++ .||.|++|++.+++. +..+..  +...+.+++|+                      
T Consensus       266 -~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s----------------------  322 (402)
T 2aq5_A          266 -TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM----------------------  322 (402)
T ss_dssp             -CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC----------------------
T ss_pred             -CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe----------------------
Confidence             234589999999999997554 699999999998764 444443  44778888886                      


Q ss_pred             CCCccceeecccccceeccee
Q 001352          697 EDVKPEISVEAENKSEVEKPL  717 (1093)
Q Consensus       697 ~d~~~l~s~~~d~~i~~w~~~  717 (1093)
                      |++.++++  .++.+++|++.
T Consensus       323 p~~~~~~s--~~~~~~~~~l~  341 (402)
T 2aq5_A          323 PKRGLEVN--KCEIARFYKLH  341 (402)
T ss_dssp             CGGGSCGG--GTEEEEEEEEE
T ss_pred             ccccccee--cceeEEEEEcC
Confidence            56666665  45689999976

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=8.7e-27  Score=264.93  Aligned_cols=328  Identities=11%  Similarity=0.130  Sum_probs=253.4

Q ss_pred             EEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCceEEE
Q 001352          458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM  536 (1093)
Q Consensus       458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  536 (1093)
                      ++++++.|+.|++||+.+++.+..+..|.. +.+++|++  ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~   79 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV   79 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence            789999999999999999999999987754 88899855  55665 677799999999999888777776655 89999


Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEE
Q 001352          537 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLT  615 (1093)
Q Consensus       537 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~  615 (1093)
                      +|+|+++++++++.   .++.|++||+.+++.+..+..+    ..+.+++|+|+++++ ++++.++.|++||+.+++.+.
T Consensus        80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  152 (391)
T 1l0q_A           80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN  152 (391)
T ss_dssp             EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCC----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            99999999877653   2567999999999988887754    368999999999988 577889999999999999988


Q ss_pred             EEecCCCCCCCceEEEecCCCEE-EEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCC
Q 001352          616 TIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED  694 (1093)
Q Consensus       616 ~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  694 (1093)
                      .+..+.   .+..++|+|+++++ ++++.++.|++||+.+++....+.                                
T Consensus       153 ~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------------------------------  197 (391)
T 1l0q_A          153 TVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--------------------------------  197 (391)
T ss_dssp             EEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred             EEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------------------------------
Confidence            887653   36899999999887 566778999999987542211000                                


Q ss_pred             CCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcc
Q 001352          695 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE  774 (1093)
Q Consensus       695 ~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~  774 (1093)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (391)
T 1l0q_A          198 --------------------------------------------------------------------------------  197 (391)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe----CCeEEEEEccCceeEEEECCCCCCeEEE
Q 001352          775 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSL  850 (1093)
Q Consensus       775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l  850 (1093)
                                                 +...+.+++|+|+++++++++    ++.|++||+.+++.+..+..+. .+.++
T Consensus       198 ---------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~  249 (391)
T 1l0q_A          198 ---------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGI  249 (391)
T ss_dssp             ---------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEE
T ss_pred             ---------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEE
Confidence                                       122355677788887777664    5789999999998888887654 57899


Q ss_pred             EEcCCCCCEE-EEEeCCCeEEEEEcCCcceeeecccccCCeE---EEE------------EeCCC----------CEEEE
Q 001352          851 AFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVT---GLV------------FSDAL----------NILVS  904 (1093)
Q Consensus       851 ~~s~~d~~~l-asg~~dg~i~iwd~~~~~~~~~l~~h~~~V~---~l~------------~s~dg----------~~l~s  904 (1093)
                      +|+| ++++| ++++.|+.|++||+.+++.+..+..|..+..   .+.            |+.+.          ..+..
T Consensus       250 ~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~  328 (391)
T 1l0q_A          250 AVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTD  328 (391)
T ss_dssp             EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEE
T ss_pred             EEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEe
Confidence            9999 77766 6778899999999999998888876654421   122            33221          34666


Q ss_pred             EeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE
Q 001352          905 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  954 (1093)
Q Consensus       905 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  954 (1093)
                      .+.|..+++|++..+....      .        .-....|+++|.+.+.
T Consensus       329 ~~~~~~~~~W~~~~g~~~~------~--------~~~~~~~~~~g~y~~~  364 (391)
T 1l0q_A          329 LSKDATEWKWDFGDGSSSK------K--------QNPTHTYSETGIYTVR  364 (391)
T ss_dssp             CCBSCSEEEEECSSSCEEC------S--------SSCEECCSSCEEEEEE
T ss_pred             CCCCceEEEEECCCCcccC------c--------CCCeEEeCCCceEEEE
Confidence            6778899999998765211      0        1224678999998875

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.2e-27  Score=248.92  Aligned_cols=270  Identities=11%  Similarity=0.058  Sum_probs=199.9

Q ss_pred             EEEEEECCCeEEEEEcCCC---ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccccee
Q 001352          637 LLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  713 (1093)
Q Consensus       637 ~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  713 (1093)
                      .+++++. ..|++|+....   +.+.+...+..+|..+.+.|+..-                      |+...- |    
T Consensus        56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------------~~~~~~-~----  107 (356)
T 2w18_A           56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN----------------------LVCVAL-G----  107 (356)
T ss_dssp             EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS----------------------CEEEEE-C----
T ss_pred             EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc----------------------eeeeee-c----
Confidence            4555554 79999999998   788889999999998888754322                      211111 0    


Q ss_pred             cceeeccCccccccccCccccccceEEEEeecC----CceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCC
Q 001352          714 EKPLFARPSECQSLLLPSKVKANKISRLTYNNG----GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  789 (1093)
Q Consensus       714 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~----g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (1093)
                                        .-+...|.+++++|+    ++.++.++.+  +.+|++                         
T Consensus       108 ------------------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l-------------------------  142 (356)
T 2w18_A          108 ------------------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL-------------------------  142 (356)
T ss_dssp             ------------------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEE-------------------------
T ss_pred             ------------------cccccceEEEEECCCccccccEEEeCCCe--EEEEec-------------------------
Confidence                              115568999999999    9988887744  555542                         


Q ss_pred             CceeeccCCCCCCCCCeeEEEEccCCCEEEEEe---CCeEEEEEc-cCceeEEEECCCCCCeEEEEEcC--CCCCEEEEE
Q 001352          790 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIV-MTFKTILTIMPPSPTATSLAFNP--HDNNVIAIG  863 (1093)
Q Consensus       790 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~---dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~s~--~d~~~lasg  863 (1093)
                                             ++|+++.++.   ++.|++|++ .+|+.+..+..|...++.++|++  .++.+||+|
T Consensus       143 -----------------------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg  199 (356)
T 2w18_A          143 -----------------------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT  199 (356)
T ss_dssp             -----------------------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred             -----------------------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence                                   3566666654   788999998 45788788888888888888887  467899999


Q ss_pred             eCCCeEEEEEcCCcceeeeccccc---CCeEEEEEeCCCCEE------------EEEeCCCcEEEEeCCCCceeeeeeee
Q 001352          864 MDDSTILIYNARSSEVISKLEGHS---KRVTGLVFSDALNIL------------VSSGGDAQIFVWDVDGWGIQTCRSLQ  928 (1093)
Q Consensus       864 ~~dg~i~iwd~~~~~~~~~l~~h~---~~V~~l~~s~dg~~l------------~s~s~dg~i~iwd~~~~~~~~~~~~~  928 (1093)
                      +.|++|+|||+.+|+++.++.+|.   ..+.+++|||||+++            ++++.|++|++||..+++......+.
T Consensus       200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~  279 (356)
T 2w18_A          200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC  279 (356)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC
T ss_pred             cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee
Confidence            999999999999999999998754   367788999999886            66888999999999997754433323


Q ss_pred             cCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCE-EEEEEccCCCEEEEEeCCCcEEEE
Q 001352          929 TPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPI-SQATFSCDCRMVFTSFVDGTLSIH 1006 (1093)
Q Consensus       929 ~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v-~~~~fs~dg~~l~t~~~dg~v~vw 1006 (1093)
                      .+.+|..   .+  +..+.++.++|+ +.|++|+|||+.+|+++.. +.+|...+ ..++|||||++|++|+.|++|+||
T Consensus       280 ~p~Gh~~---~~--lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~t-L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW  353 (356)
T 2w18_A          280 LPPGQAG---RF--LEGDVKDHCAAAILTSGTIAIWDLLLGQCTAL-LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY  353 (356)
T ss_dssp             CCTTCCC---CE--EEEEEETTEEEEEETTSCEEEEETTTCSEEEE-ECCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred             ccCCCcc---ee--EccccCCCEEEEEcCCCcEEEEECCCCcEEEE-ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence            3445543   23  334444888888 4799999999999999988 45676554 468999999999999999999999


Q ss_pred             Ec
Q 001352         1007 EA 1008 (1093)
Q Consensus      1007 d~ 1008 (1093)
                      |+
T Consensus       354 d~  355 (356)
T 2w18_A          354 HY  355 (356)
T ss_dssp             EE
T ss_pred             cC
Confidence            96

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-28  Score=303.41  Aligned_cols=254  Identities=17%  Similarity=0.297  Sum_probs=215.3

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV  470 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v  470 (1093)
                      +.+|.++|++++|+|+|++|++|+.||+|+|||+.++. ......+.+|.++|++++|+++  ++  ++++|+.||+|++
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~v   81 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI   81 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEEE
T ss_pred             cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEEE
Confidence            77899999999999999999999999999999998543 2334468899999999999988  77  8999999999999


Q ss_pred             EECCCCc--eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEcc------
Q 001352          471 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------  540 (1093)
Q Consensus       471 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~------  540 (1093)
                      ||+.+++  .+..+.+|...|.+++|++..++.++++++.||.|++||+....  ....+..+...|.+++|+|      
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence            9999987  77888899999999999876447899999999999999998773  4456677888999999999      


Q ss_pred             -------CCCEEEEEecCCCCceeEEEEeCCCC----eeeeeeecccccCCCeEEEEEcCC---CCEEEEEeCCCcEEEE
Q 001352          541 -------NGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW  606 (1093)
Q Consensus       541 -------d~~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~dg~i~iw  606 (1093)
                             ++..+++++.    ++.|++||+.++    .....+.+|.   ..|.+++|+|+   ++++++++.||.|++|
T Consensus       162 ~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw  234 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW  234 (753)
T ss_dssp             -----CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred             cccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence                   5899999986    667999999877    4556667766   89999999999   8999999999999999


Q ss_pred             ECCCCceE---EEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCc
Q 001352          607 DMNKVQLL---TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN  656 (1093)
Q Consensus       607 d~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~  656 (1093)
                      |+.+++..   .......+...|.+++|+|+|+++++++.||.|++|++....
T Consensus       235 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             cCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            99886422   112222344568999999999999999999999999998653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.7e-26  Score=266.49  Aligned_cols=355  Identities=14%  Similarity=0.092  Sum_probs=260.0

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcC-CEEEEEEccCCCcccceEEeccccccEEEEE---eeCCCCcEEEE-----------
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLA---FSAPCKQISVI-----------  460 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~---~s~d~~~l~l~-----------  460 (1093)
                      ....|..+.++|....++..... ...+++..             .....+..++   |+|+++.++++           
T Consensus        26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~   92 (433)
T 3bws_A           26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEM-------------DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYR   92 (433)
T ss_dssp             -CEEEEEEEEECCTTCEEEETTEECCEEEEEE-------------ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEE
T ss_pred             CCcEEEEEecccccCceEEcCceecceeeeec-------------ccCCccEEEEEeeccCCCcEEEEEEccccCcceee
Confidence            44567777888865444433211 11222221             1233455666   77766532222           


Q ss_pred             -EEcCCC--cEEEEECCCC--ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE-----EecCCC
Q 001352          461 -TCGDDK--TIKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-----DYDAPG  530 (1093)
Q Consensus       461 -s~~~d~--~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~  530 (1093)
                       +++.++  .|..||..++  +.+..+..+. .+.+++|++  ++.++++++.++.|++||+.+++...     .+..+.
T Consensus        93 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~  169 (433)
T 3bws_A           93 IRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL  169 (433)
T ss_dssp             ESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred             ecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence             233444  4444454445  5566666554 455888866  66788888899999999999887766     334667


Q ss_pred             CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 001352          531 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN  609 (1093)
Q Consensus       531 ~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~  609 (1093)
                      ..+.+++|+++++++++++.    ++.|++||+.+++.+..+..+.   ..+.+++|+|+++.+++++ .++.|++||+.
T Consensus       170 ~~v~~~~~~~~~~~~~s~~~----d~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  242 (433)
T 3bws_A          170 GFVETISIPEHNELWVSQMQ----ANAVHVFDLKTLAYKATVDLTG---KWSKILLYDPIRDLVYCSNWISEDISVIDRK  242 (433)
T ss_dssp             CEEEEEEEGGGTEEEEEEGG----GTEEEEEETTTCCEEEEEECSS---SSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CceeEEEEcCCCEEEEEECC----CCEEEEEECCCceEEEEEcCCC---CCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence            78999999999999998875    6779999999999988888766   7899999999999886654 89999999999


Q ss_pred             CCceEEEEecCCCCCCCceEEEecCCCEEEEEE--------CCCeEEEEEcCCCceeeecccccccceeeeecCCCceee
Q 001352          610 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--------NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG  681 (1093)
Q Consensus       610 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--------~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  681 (1093)
                      +++.+..+..+.   .+.+++|+|+++++++++        .|+.|++||+.+++.....                    
T Consensus       243 ~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--------------------  299 (433)
T 3bws_A          243 TKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI--------------------  299 (433)
T ss_dssp             TTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--------------------
T ss_pred             CCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--------------------
Confidence            999888776543   378999999999999887        3667777776543111000                    


Q ss_pred             eeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEE
Q 001352          682 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM  761 (1093)
Q Consensus       682 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~v  761 (1093)
                                                                                                      
T Consensus       300 --------------------------------------------------------------------------------  299 (433)
T 3bws_A          300 --------------------------------------------------------------------------------  299 (433)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE-e-CCeEEEEEccCceeEEE
Q 001352          762 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILT  839 (1093)
Q Consensus       762 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-dg~i~iwd~~~~~~~~~  839 (1093)
                                                             .+...+.+++|+|+++.++++ + ++.|++||+.+++.+..
T Consensus       300 ---------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~  340 (433)
T 3bws_A          300 ---------------------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS  340 (433)
T ss_dssp             ---------------------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ---------------------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence                                                   012235567888888755444 3 68999999999988887


Q ss_pred             ECCCCCCeEEEEEcCCCCCEEEEEeC---------------CCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEE
Q 001352          840 IMPPSPTATSLAFNPHDNNVIAIGMD---------------DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS  904 (1093)
Q Consensus       840 ~~~~~~~i~~l~~s~~d~~~lasg~~---------------dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s  904 (1093)
                      +. +...+.+++|+| ++++|++++.               ||.|++||+.+++.+..+.. ...+.+++|+|||++|++
T Consensus       341 ~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~  417 (433)
T 3bws_A          341 IP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVI  417 (433)
T ss_dssp             EE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEE
T ss_pred             ec-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEE
Confidence            76 677899999999 8888888876               57999999999998888876 457999999999999998


Q ss_pred             EeC-CCcEEEEeCCC
Q 001352          905 SGG-DAQIFVWDVDG  918 (1093)
Q Consensus       905 ~s~-dg~i~iwd~~~  918 (1093)
                      ++. |+.|++|+++.
T Consensus       418 ~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          418 SDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EETTTTEEEEEEETT
T ss_pred             EECCCCeEEEEEecC
Confidence            875 99999999874

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=9.5e-27  Score=268.69  Aligned_cols=300  Identities=12%  Similarity=0.038  Sum_probs=229.8

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceE--EeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352          398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  475 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  475 (1093)
                      ..+.+++|+|++.++++++.++.|++||+.+++......  .+.+|...|.+++|++++.  ++++++.|+.|++||+.+
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence            456699999988888888888999999999987553211  2347889999999999998  899999999999999999


Q ss_pred             CceeEEeecCCCCeEEeeecccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC-
Q 001352          476 GSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-  553 (1093)
Q Consensus       476 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~-  553 (1093)
                      ++.+..+..|...+.+++|++  ++..+ ++++.|+.|++||+++++....+.. ...+.+++|+|+|+++++++.... 
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~  277 (433)
T 3bws_A          201 LAYKATVDLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN  277 (433)
T ss_dssp             CCEEEEEECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred             ceEEEEEcCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence            999999999999999999965  55566 4555899999999998777666655 446899999999999998874321 


Q ss_pred             ---CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceEEEEecCCCCCCCceE
Q 001352          554 ---GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  629 (1093)
Q Consensus       554 ---~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  629 (1093)
                         .++.|++||+.+++.+..+. +.   ..+..++|+|+++.++ +++.++.|++||+.+++.+..+...   ..+.++
T Consensus       278 ~~~~dg~i~~~d~~~~~~~~~~~-~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~  350 (433)
T 3bws_A          278 QESGGGRLGIYSMDKEKLIDTIG-PP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---DKPNTI  350 (433)
T ss_dssp             TCSCCEEEEEEETTTTEEEEEEE-EE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEE
T ss_pred             cccCCCeEEEEECCCCcEEeecc-CC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---CCCCeE
Confidence               36789999999998876653 33   4788999999998664 5689999999999999988888643   347899


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccc
Q 001352          630 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  709 (1093)
Q Consensus       630 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  709 (1093)
                      +|+|+|+++++++.+..                                                 .....++++++.||
T Consensus       351 ~~s~dg~~l~~~~~~~~-------------------------------------------------~~~~~~~~~g~~dg  381 (433)
T 3bws_A          351 ALSPDGKYLYVSCRGPN-------------------------------------------------HPTEGYLKKGLVLG  381 (433)
T ss_dssp             EECTTSSEEEEEECCCC-------------------------------------------------CTTTCTTSCCSSCC
T ss_pred             EEcCCCCEEEEEecCCC-------------------------------------------------ccccccccccccce
Confidence            99999999988876320                                                 01123344555555


Q ss_pred             cceecceeeccCccccccccCccccccceEEEEeecCCceEEEeec-cceeEEeeec
Q 001352          710 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWP  765 (1093)
Q Consensus       710 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~v~vw~~~  765 (1093)
                      .+.+||....+.....       .....+.+++|+|+|+.+++++. ++.+++|++.
T Consensus       382 ~v~~~d~~~~~~~~~~-------~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          382 KVYVIDTTTDTVKEFW-------EAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEEEETTTTEEEEEE-------ECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             EEEEEECCCCcEEEEe-------cCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            5555554322111110       02345788999999998888775 8999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=1e-27  Score=275.39  Aligned_cols=254  Identities=17%  Similarity=0.249  Sum_probs=212.6

Q ss_pred             hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCC----------CceeEEeeeeeeecccccceeeeeeecCCCCCe
Q 001352          331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS----------GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  400 (1093)
Q Consensus       331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  400 (1093)
                      +.+|.+.|++++|+|++..++|+|+.||.|+|||+.+          ...+..                   +.+|...|
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v  184 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLR-------------------LRGHQKEG  184 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEE-------------------EECCSSCC
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEE-------------------ecCCCCCe
Confidence            4579999999999998555799999999999999986          233322                   67899999


Q ss_pred             EEEEECCCCC-EEEEEEcCCEEEEEEccCCCcc----cceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352          401 NRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  475 (1093)
Q Consensus       401 ~~v~~s~dg~-~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  475 (1093)
                      .+++|+|++. +|++|+.||.|++||+.++...    .....+.+|...|.+++|+|++.. ++++++.|+.|++||+.+
T Consensus       185 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~  263 (430)
T 2xyi_A          185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRN  263 (430)
T ss_dssp             CCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTC
T ss_pred             EEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence            9999999998 9999999999999999885432    223457789999999999995444 899999999999999998


Q ss_pred             C---ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCC-EEEEEec
Q 001352          476 G---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGR-RLFSCGT  550 (1093)
Q Consensus       476 ~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~  550 (1093)
                      +   +.+..+..|...|++++|++.. ..++++|+.||.|++||++. ......+..|...|.+++|+|+++ ++++++.
T Consensus       264 ~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~  342 (430)
T 2xyi_A          264 NNTSKPSHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT  342 (430)
T ss_dssp             SCSSSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET
T ss_pred             CCCCcceeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC
Confidence            7   5778888999999999997643 24799999999999999998 456778888999999999999996 5777765


Q ss_pred             CCCCceeEEEEeCCC--------------CeeeeeeecccccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 001352          551 SKEGESFLVEWNESE--------------GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ  612 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~--------------~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~~~~~  612 (1093)
                          ++.|++||+..              .+.+..+.+|.   ..|.+++|+|+++ .+++++.||.|++|++....
T Consensus       343 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          343 ----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             ----TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             ----CCcEEEEeCCCCccccCccccccCCcceEEEcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence                66799999987              24555555655   8899999999999 88899999999999987543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=3.7e-27  Score=262.76  Aligned_cols=296  Identities=13%  Similarity=0.133  Sum_probs=215.1

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      ..+|...|.+++|||||++||+|+.++ ++|||+.+++...   .  .+...+..+++.++++. ++++++.|++|++||
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd   87 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD   87 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence            467999999999999999999998776 7899998764332   2  22235788899988874 346788889999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTS  551 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~  551 (1093)
                      +.+++++..+. |...|.++++++  +  .++++ .|+.|++||+.+. +....+..   ....+++++  .++++++..
T Consensus        88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~  156 (355)
T 3vu4_A           88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEF  156 (355)
T ss_dssp             TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESS
T ss_pred             CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCC
Confidence            99999999887 677999999854  3  34443 5889999999887 54444433   444566777  667665221


Q ss_pred             CCCceeEEEEeCCCCe----------------eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceE
Q 001352          552 KEGESFLVEWNESEGA----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLL  614 (1093)
Q Consensus       552 ~~~~~~i~iwd~~~~~----------------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~  614 (1093)
                        .++.|++||+.++.                .+..+.+|.   ..|.+++|+|++++|++|+.||+ |++||+.+++.+
T Consensus       157 --~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~  231 (355)
T 3vu4_A          157 --NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV  231 (355)
T ss_dssp             --CTTCEEEEECCC------------------CCEEECCCS---SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred             --cCcEEEEEECCCCCccccccccccccccCcccEEEEccC---CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence              26679999999876                267777777   89999999999999999999998 999999999999


Q ss_pred             EEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCcee--eeccc-----cccccee---eeecCCCceeeeec
Q 001352          615 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV--DAAGV-----LSDNLRK---LSVNPISTVTGAGI  684 (1093)
Q Consensus       615 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~-----~~~~i~~---~~~~~~~~~~~~~~  684 (1093)
                      ..+....+...|.+++|+|++++|++++.|++|++|++......  ..+..     .......   ..+.+.     ...
T Consensus       232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  306 (355)
T 3vu4_A          232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD-----KHV  306 (355)
T ss_dssp             EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC-----TTC
T ss_pred             EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC-----CCC
Confidence            99873223457999999999999999999999999999865321  11111     0000110   111100     000


Q ss_pred             cCCceEecCCCCCCCccceeecccccceecceeecc
Q 001352          685 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  720 (1093)
Q Consensus       685 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~  720 (1093)
                      ....+++    +++++.+++++.||.+++|++....
T Consensus       307 ~~~~~a~----~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          307 RGCKIAW----ISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             CCCEEEE----SSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             CceEEEE----eCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            1134455    6899999999999999999987543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.9e-28  Score=268.56  Aligned_cols=273  Identities=10%  Similarity=0.061  Sum_probs=215.1

Q ss_pred             eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC
Q 001352          339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  418 (1093)
Q Consensus       339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d  418 (1093)
                      ....+.+|++ ++++|+.||+|++||+.+++.+....                     ...|.+++|+|+   +++++.|
T Consensus        40 ~~~~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~---------------------~~~v~~~~~~~~---~~s~s~D   94 (343)
T 3lrv_A           40 LNKSMYYDKW-VCMCRCEDGALHFTQLKDSKTITTIT---------------------TPNPRTGGEHPA---IISRGPC   94 (343)
T ss_dssp             ECSSSSEEEE-EEEEEEETTEEEEEEESSSSCEEEEE---------------------EECCCTTCCCCS---EEEECST
T ss_pred             hhhhhcCCCC-EEEEECCCCcEEEEECCCCcEEEEEe---------------------cCCceeeeeCCc---eEEecCC
Confidence            3445667887 69999999999999999998876421                     356778889988   9999999


Q ss_pred             CEEEEEEcc---------CCCcccceEEeccccccEEEEEeeC--CCCcEEEEEEcCCCcEEEEECCCCceeEEeec-CC
Q 001352          419 HIVQLYAYH---------GGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HG  486 (1093)
Q Consensus       419 ~~i~iwd~~---------~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-h~  486 (1093)
                      ++|++|+..         +++.++.  ...+|.+.|.+++|+|  +++  ++++++.|++|++||+.+++.+..... |.
T Consensus        95 ~~i~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~  170 (343)
T 3lrv_A           95 NRLLLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSD  170 (343)
T ss_dssp             TEEEEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSS
T ss_pred             CeEEEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCC
Confidence            999999765         3332221  1236778999999999  998  899999999999999999999776643 55


Q ss_pred             CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce-EEecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352          487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  564 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~  564 (1093)
                      ..|.+++|+|  ++.+|++|+.||.|++||+++.... ..+.. |...|.+++|+|+|.+|++++.    + .|++||++
T Consensus       171 ~~i~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~----~-~v~iwd~~  243 (343)
T 3lrv_A          171 VEYSSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD----Q-TVVCFDLR  243 (343)
T ss_dssp             CCCCEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES----S-BEEEEETT
T ss_pred             CceEEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC----C-eEEEEEcC
Confidence            6899999965  6789999999999999999998887 77777 8899999999999999999983    2 69999999


Q ss_pred             CCeeeeeeecccccCCCe--EEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEEEecCCCCCCCceEEEec---CCCEE
Q 001352          565 EGAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLL  638 (1093)
Q Consensus       565 ~~~~~~~~~~~~~~~~~v--~~v~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l  638 (1093)
                      +++....+..+..+...+  .+++|+|+++++++++. |+.+++|++.+.......      ..+..++|++   +...+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l  317 (343)
T 3lrv_A          244 KDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDM  317 (343)
T ss_dssp             SSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEE
T ss_pred             CCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCcccccccee
Confidence            988776665532222333  36999999999999988 999999999765543332      1255677777   88899


Q ss_pred             EEEECCCeEEEEEcC
Q 001352          639 AVIANENRIKILETP  653 (1093)
Q Consensus       639 ~~~~~dg~i~iw~~~  653 (1093)
                      ++++.||.+.++-..
T Consensus       318 ~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          318 DVVCGDGGIAAILKT  332 (343)
T ss_dssp             EEEEETTEEEEEEEC
T ss_pred             EEEecCCceEEEEec
Confidence            999999999887544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.1e-27  Score=264.07  Aligned_cols=278  Identities=8%  Similarity=0.047  Sum_probs=217.3

Q ss_pred             EeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001352          449 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA  528 (1093)
Q Consensus       449 ~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  528 (1093)
                      .+.+++.  ++++|+.||+|++||+.+++.+..+.  ...|.++.+++.     +++++.|++|++|+...         
T Consensus        43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~---------  104 (343)
T 3lrv_A           43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN---------  104 (343)
T ss_dssp             SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred             hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence            4456677  89999999999999999999988886  466777777654     99999999999998642         


Q ss_pred             CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeee-cccccCCCeEEEEEcC--CCCEEEEEeCCCcEEE
Q 001352          529 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKI  605 (1093)
Q Consensus       529 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~v~~~~--~~~~l~~~~~dg~i~i  605 (1093)
                                                  .+.+|+..+++.++.+. +|.   ..|.+++|+|  +++++++++.||+|++
T Consensus       105 ----------------------------~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A          105 ----------------------------QITILDSKTNKVLREIEVDSA---NEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ----------------------------EEEEEETTTCCEEEEEECCCS---SCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             ----------------------------ceEEeecCCcceeEEeecCCC---CCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence                                        27788988888666665 443   7899999999  9999999999999999


Q ss_pred             EECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCcee-eecccccccceeeeecCCCceeeeec
Q 001352          606 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV-DAAGVLSDNLRKLSVNPISTVTGAGI  684 (1093)
Q Consensus       606 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~  684 (1093)
                      ||+.+++.......+. ...+.+++|+|++.++++|+.||.|++||+.++... ..+.                      
T Consensus       154 wd~~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~----------------------  210 (343)
T 3lrv_A          154 QSYEDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP----------------------  210 (343)
T ss_dssp             EESSSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC----------------------
T ss_pred             EECCCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe----------------------
Confidence            9999999876664432 235899999999999999999999999998755221 0000                      


Q ss_pred             cCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeee
Q 001352          685 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  764 (1093)
Q Consensus       685 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~  764 (1093)
                                                                                                      
T Consensus       211 --------------------------------------------------------------------------------  210 (343)
T 3lrv_A          211 --------------------------------------------------------------------------------  210 (343)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECC--
Q 001352          765 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP--  842 (1093)
Q Consensus       765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~--  842 (1093)
                                                         .+|...|.+++|+|+|.+|++++++.|++||+.+++.+..+..  
T Consensus       211 -----------------------------------~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~  255 (343)
T 3lrv_A          211 -----------------------------------VDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYT  255 (343)
T ss_dssp             -----------------------------------CCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCB
T ss_pred             -----------------------------------ccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccc
Confidence                                               0166778888888888888888877889999888766554443  


Q ss_pred             -CCCCe--EEEEEcCCCCCEEEEEeC-CCeEEEEEcCCcceeeecccccCCeEEEEEeC---CCCEEEEEeCCCcEEEEe
Q 001352          843 -PSPTA--TSLAFNPHDNNVIAIGMD-DSTILIYNARSSEVISKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWD  915 (1093)
Q Consensus       843 -~~~~i--~~l~~s~~d~~~lasg~~-dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~---dg~~l~s~s~dg~i~iwd  915 (1093)
                       |...+  .+++|+| ++++|++++. |+.|++|++.++......    .++..++|++   +.+.+++++.|+.+.++-
T Consensus       256 ~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          256 IPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             C-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred             cccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEE
Confidence             33333  4699999 8999999998 999999999766543332    5678889998   889999999999999886


Q ss_pred             CCC
Q 001352          916 VDG  918 (1093)
Q Consensus       916 ~~~  918 (1093)
                      ...
T Consensus       331 ~~~  333 (343)
T 3lrv_A          331 KTN  333 (343)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.5e-27  Score=271.47  Aligned_cols=264  Identities=15%  Similarity=0.097  Sum_probs=219.1

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEec--------------------------------------
Q 001352          398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID--------------------------------------  439 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~--------------------------------------  439 (1093)
                      .++.+++|+|||++|+++ .++.|++||+.+|+.......+.                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            578999999999976665 57789999999987211111222                                      


Q ss_pred             ----------------cccccEEEEEeeCCCCcEE-EEEEcCCCcEEEEECC--CCceeEEee--cCCCCeEEeeecccC
Q 001352          440 ----------------AHVGNVNDLAFSAPCKQIS-VITCGDDKTIKVWDAV--TGSRTYSFE--GHGAPVYSLCPHAKE  498 (1093)
Q Consensus       440 ----------------~h~~~v~~~~~s~d~~~l~-l~s~~~d~~i~vwd~~--~~~~~~~~~--~h~~~v~~~~~~~~~  498 (1093)
                                      +|.+.|++++|+|+++  + +++++.||.|++||+.  +++.+..+.  .|...|.+++|++  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--  159 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--  159 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--
Confidence                            3455799999999999  5 4899999999999999  899888886  5778999999955  


Q ss_pred             CccEEEEEecCCeEEEEEcCCCCceE----EecCCCCceEEEEEccC---CCEEEEEecCCCCceeEEEEeCCCCeeeee
Q 001352          499 NIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAIKRT  571 (1093)
Q Consensus       499 ~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~d---~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  571 (1093)
                      ++.+|++++.+|.|++|++.+.....    .+..|...|.+++|+|+   +++|++++.    ++.|++||+.+++.+..
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~  235 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDK  235 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEE
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeee
Confidence            66899999999999999998776543    56678889999999999   999999986    56799999999988877


Q ss_pred             -eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-----------------------CCCCCCc
Q 001352          572 -YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------GGLPENP  627 (1093)
Q Consensus       572 -~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~  627 (1093)
                       +.+|.   ..|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+                       .....+.
T Consensus       236 ~~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (450)
T 2vdu_B          236 WLFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS  311 (450)
T ss_dssp             ECCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred             eecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence             44666   899999999 9999999999999999999999988887632                       1123578


Q ss_pred             eEEEecCCCEEEEEE-CCCeEEEEEc--CCC---ceeeecccccccceeeeecC
Q 001352          628 RICFNKNGTLLAVIA-NENRIKILET--PES---NSVDAAGVLSDNLRKLSVNP  675 (1093)
Q Consensus       628 ~v~~s~~~~~l~~~~-~dg~i~iw~~--~~~---~~~~~~~~~~~~i~~~~~~~  675 (1093)
                      .++|+|+++++++++ .++.|++|++  ..+   ..+..+..+ ..+.+++|+|
T Consensus       312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~  364 (450)
T 2vdu_B          312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN  364 (450)
T ss_dssp             EEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC
Confidence            899999999999999 8999999999  555   556666666 7788888885

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=8.9e-27  Score=267.64  Aligned_cols=255  Identities=16%  Similarity=0.310  Sum_probs=213.6

Q ss_pred             eeeecCCCCCeEEEEECCC-CCEEEEEEcCCEEEEEEccCC-------CcccceEEeccccccEEEEEeeCCCCcEEEEE
Q 001352          390 TALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG-------SDARQQLEIDAHVGNVNDLAFSAPCKQISVIT  461 (1093)
Q Consensus       390 ~~~~~~h~~~V~~v~~s~d-g~~las~~~d~~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s  461 (1093)
                      .....+|.+.|++++|+|+ +.+||+++.+|.|++||+.+.       ........+.+|...|.+++|+|++.. +|++
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s  199 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLS  199 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEE
Confidence            3346679999999999997 789999999999999999862       112334477899999999999999876 6999


Q ss_pred             EcCCCcEEEEECCCCce-------eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCCC
Q 001352          462 CGDDKTIKVWDAVTGSR-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGL  531 (1093)
Q Consensus       462 ~~~d~~i~vwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~  531 (1093)
                      |+.||.|++||+.++..       ...+.+|...|.+++|++. ++.++++++.||.|++||+++.   .....+..+..
T Consensus       200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence            99999999999988432       4567789999999999764 4579999999999999999987   46667778889


Q ss_pred             ceEEEEEccCCC-EEEEEecCCCCceeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC
Q 001352          532 GCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDM  608 (1093)
Q Consensus       532 ~v~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~  608 (1093)
                      .|.+++|+|++. .+++++.    ++.|++||+++ +..+..+.+|.   ..|.+++|+|+++ .+++++.||.|++||+
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~  351 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVWDL  351 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred             CeEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence            999999999998 5667765    67799999998 56778888777   8999999999985 5888999999999999


Q ss_pred             CC--------------CceEEEEecCCCCCCCceEEEecCCC-EEEEEECCCeEEEEEcCCC
Q 001352          609 NK--------------VQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES  655 (1093)
Q Consensus       609 ~~--------------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~  655 (1093)
                      ..              .+.+..+..+  ...|.+++|+|+++ ++++++.||.|++|++...
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          352 SKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             GGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            87              2444444433  45699999999999 9999999999999998754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=3e-26  Score=268.47  Aligned_cols=343  Identities=9%  Similarity=0.082  Sum_probs=256.6

Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCceE
Q 001352          537 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLL  614 (1093)
Q Consensus       537 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~  614 (1093)
                      +++|++..++++..    ++.|.+||..+++++.++....    .+..++|+|+++++++++.|++|++||+  .+++.+
T Consensus       144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~  215 (543)
T 1nir_A          144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV  215 (543)
T ss_dssp             CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence            37888887777654    6779999999999999888543    3889999999999999999999999999  889888


Q ss_pred             EEEecCCCCCCCceEEEec----CCCEEEEEEC-CCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCce
Q 001352          615 TTIDAGGGLPENPRICFNK----NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV  689 (1093)
Q Consensus       615 ~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  689 (1093)
                      ..+....   .+..++|+|    +|+++++++. +++|.+||..+.+.+..+..+...+....+                
T Consensus       216 ~~i~~g~---~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~----------------  276 (543)
T 1nir_A          216 AEIKIGI---EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY----------------  276 (543)
T ss_dssp             EEEECCS---EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE----------------
T ss_pred             EEEecCC---CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccc----------------
Confidence            8887532   368999999    9999999885 899999999888776655422111100000                


Q ss_pred             EecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEE-eeccceeEEeeecCcc
Q 001352          690 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA-LASNGVHLMWRWPRND  768 (1093)
Q Consensus       690 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~-~~~dg~v~vw~~~~~~  768 (1093)
                                                                 .....+.++.+++++..+++ ...++.+.+|++....
T Consensus       277 -------------------------------------------~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~  313 (543)
T 1nir_A          277 -------------------------------------------HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID  313 (543)
T ss_dssp             -------------------------------------------ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred             -------------------------------------------ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence                                                       02236788999997766554 4556899998865421


Q ss_pred             cCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEccCceeEEEECC----
Q 001352          769 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP----  842 (1093)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~----  842 (1093)
                      .                      +....+   .+...+.+++|+|||+++++++  +++|.+||..+++++..+..    
T Consensus       314 ~----------------------l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p  368 (543)
T 1nir_A          314 N----------------------LTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP  368 (543)
T ss_dssp             S----------------------CEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred             c----------------------ceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence            1                      110011   1344567899999999887765  68999999999999988764    


Q ss_pred             CCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCC-------cceeeecccccCCeEEEEEeCCCCEEEEEe-------C
Q 001352          843 PSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSG-------G  907 (1093)
Q Consensus       843 ~~~~i~~l~~s~~d~~~lasg~-~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s-------~  907 (1093)
                      |.+....+ ++|+++.+++++. .|++|.+||+.+       +++++++.+|.+.+..++|+|||++|++++       .
T Consensus       369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~  447 (543)
T 1nir_A          369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI  447 (543)
T ss_dssp             CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred             CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence            54444343 5774477788776 689999999998       889999999999999999999999999987       2


Q ss_pred             CCcEEEEeCCCCcee-eeeeeecCCCcccCCCCceEEEEccCCCEEEEE------eCCeEEEEEcCCcceeeeee
Q 001352          908 DAQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF  975 (1093)
Q Consensus       908 dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~------~d~~i~vwd~~~~~~~~~~~  975 (1093)
                      +++|.+||+.+++.. ....+....+-......+..++|+|||+.++++      .++.|.|||..+++++..+.
T Consensus       448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence            679999999997754 211111100001112368999999999999874      26899999999999988754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=6.8e-26  Score=265.50  Aligned_cols=345  Identities=11%  Similarity=0.091  Sum_probs=247.2

Q ss_pred             eecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeec-CCCCCeEEEEECCCCCEEEEEEcCCE
Q 001352          342 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNRVVWSPDGSLLGVAYSKHI  420 (1093)
Q Consensus       342 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s~dg~~las~~~d~~  420 (1093)
                      +|+|++. ++++++.|++|.+||..+++++..                   +. ++.  +.+++|||||++|++++.|++
T Consensus       144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~  201 (543)
T 1nir_A          144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR  201 (543)
T ss_dssp             CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred             ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence            4899996 789999999999999999998865                   33 333  889999999999999999999


Q ss_pred             EEEEEc--cCCCcccceEEeccccccEEEEEeeC----CCCcEEEEEEc-CCCcEEEEECCCCceeEEeecCCCCeEEee
Q 001352          421 VQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSA----PCKQISVITCG-DDKTIKVWDAVTGSRTYSFEGHGAPVYSLC  493 (1093)
Q Consensus       421 i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~----d~~~l~l~s~~-~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  493 (1093)
                      |.+||+  .+++.+.   ++. +...+..++|+|    ||+  ++++++ .+++|.+||..+++++.++..+...+....
T Consensus       202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~  275 (543)
T 1nir_A          202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT  275 (543)
T ss_dssp             EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred             EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence            999999  7765444   454 445689999999    999  566666 589999999999999888764322111111


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee--e
Q 001352          494 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR--T  571 (1093)
Q Consensus       494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~--~  571 (1093)
                      ++                                 +...+..+.++|++..++++..   +++.|.+||..+++.+.  .
T Consensus       276 ~~---------------------------------~~~~v~~i~~s~~~~~~~vs~~---~~g~i~vvd~~~~~~l~~~~  319 (543)
T 1nir_A          276 YH---------------------------------PEPRVAAIIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTS  319 (543)
T ss_dssp             EE---------------------------------SCCCEEEEEECSSSSEEEEEET---TTTEEEEEECTTSSSCEEEE
T ss_pred             cc---------------------------------cCCceEEEEECCCCCEEEEEEC---CCCeEEEEEecCCCcceeEE
Confidence            11                                 1225667888888777666543   36678899988765543  2


Q ss_pred             eecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEE-EecC-CCEEEEEE-CCCeE
Q 001352          572 YQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKN-GTLLAVIA-NENRI  647 (1093)
Q Consensus       572 ~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~-~~~l~~~~-~dg~i  647 (1093)
                      +. +   ...+..+.|+|+++++++++ .+++|.+||..+++++..+........-..+. ++|+ +..++++. .|++|
T Consensus       320 i~-~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V  395 (543)
T 1nir_A          320 IG-A---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI  395 (543)
T ss_dssp             EE-C---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEE
T ss_pred             ec-c---CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceE
Confidence            22 2   25678899999999887655 68999999999999998887532111112233 4676 55566654 57899


Q ss_pred             EEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcccccc
Q 001352          648 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL  727 (1093)
Q Consensus       648 ~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~  727 (1093)
                      .+|+..+..       |..                                                             
T Consensus       396 ~v~d~~~~~-------~~~-------------------------------------------------------------  407 (543)
T 1nir_A          396 SLIGTDPKN-------HPQ-------------------------------------------------------------  407 (543)
T ss_dssp             EEEECCTTT-------CTT-------------------------------------------------------------
T ss_pred             EEEEeCCCC-------Cch-------------------------------------------------------------
Confidence            999987520       000                                                             


Q ss_pred             ccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCee
Q 001352          728 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  807 (1093)
Q Consensus       728 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  807 (1093)
                            +...+                                                     +.+..    .+...+.
T Consensus       408 ------~~~~~-----------------------------------------------------v~~l~----~~g~~~~  424 (543)
T 1nir_A          408 ------YAWKK-----------------------------------------------------VAELQ----GQGGGSL  424 (543)
T ss_dssp             ------TBTSE-----------------------------------------------------EEEEE----CSCSCCC
T ss_pred             ------hcCeE-----------------------------------------------------EEEEE----cCCCCce
Confidence                  00000                                                     00000    1334456


Q ss_pred             EEEEccCCCEEEEEe--------CCeEEEEEccCceeE-EEE--------CCCCCCeEEEEEcCCCCCEEEEEe-----C
Q 001352          808 CFALSKNDAYLFSAS--------GGVISLYIVMTFKTI-LTI--------MPPSPTATSLAFNPHDNNVIAIGM-----D  865 (1093)
Q Consensus       808 ~l~~s~dg~~la~~~--------dg~i~iwd~~~~~~~-~~~--------~~~~~~i~~l~~s~~d~~~lasg~-----~  865 (1093)
                      .++++|||++|++++        +++|.+||+.+++.. ..+        ..+...+..++|+| +|+.|+++.     .
T Consensus       425 ~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~  503 (543)
T 1nir_A          425 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKND  503 (543)
T ss_dssp             CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTS
T ss_pred             EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCC
Confidence            678888888888876        468999999998877 443        35567899999999 888887663     4


Q ss_pred             CCeEEEEEcCCcceeeecccc
Q 001352          866 DSTILIYNARSSEVISKLEGH  886 (1093)
Q Consensus       866 dg~i~iwd~~~~~~~~~l~~h  886 (1093)
                      ++.|.|||..+++++.+++.+
T Consensus       504 ~~~i~v~D~~t~~~~~~i~~~  524 (543)
T 1nir_A          504 SSALVVVDDKTLKLKAVVKDP  524 (543)
T ss_dssp             CCEEEEEETTTTEEEEEECCT
T ss_pred             CCeEEEEECCCceEEEeecCC
Confidence            799999999999999988854

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.5e-26  Score=240.93  Aligned_cols=286  Identities=14%  Similarity=0.080  Sum_probs=198.1

Q ss_pred             Cceeeeec-CCCceEEEEEccCCcEEEEecCCC---ceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352          337 SPMSMDFH-PVQHTLLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  412 (1093)
Q Consensus       337 ~V~~~~~s-pdg~~llasg~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l  412 (1093)
                      .+.++-|- +..+.+.+.......|++|+..++   +.+++                   +.+|+.+|..++++||-.-|
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~~~  101 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYT-------------------WHFAEVPVLQIVPVPDVYNL  101 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEE-------------------EECCSSCEEEECCCTTCCSC
T ss_pred             EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEE-------------------EeccCceeEEEEEcCcccce
Confidence            45566664 444555555555689999999998   55554                   55677777777777754433


Q ss_pred             EEE-EcC-CEEEEEEccCC---CcccceEEeccccccEEEEEeeCCCCcEEEEEEc--CCCcEEEEEC-CCCceeEEeec
Q 001352          413 GVA-YSK-HIVQLYAYHGG---SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDA-VTGSRTYSFEG  484 (1093)
Q Consensus       413 as~-~~d-~~i~iwd~~~~---~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~-~~~~~~~~~~~  484 (1093)
                      +.. -.+ ..-.++-+.-.   +.+.+...-.+|...|..+   ++++  ++.+++  .|+.|++|++ .+|+.+..+.+
T Consensus       102 ~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~  176 (356)
T 2w18_A          102 VCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVEVMTFAEDGGGKENQFL  176 (356)
T ss_dssp             EEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEEEEEECTTSCEEEEEEE
T ss_pred             eeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEEEEEECCCCceeeeecc
Confidence            222 111 01111111110   1111111223444445443   4555  444533  5899999998 55888888899


Q ss_pred             CCCCeEEeeecc-cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC---ceEEEEEccCCCEEEEEec--------CC
Q 001352          485 HGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSANGRRLFSCGT--------SK  552 (1093)
Q Consensus       485 h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~s~d~~~l~~~~~--------~~  552 (1093)
                      |...++.++|++ .+++.+|++++.|++|++||+.+++....+..+..   .+.+++|+|+|.++++++.        ++
T Consensus       177 ~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSG  256 (356)
T 2w18_A          177 MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLR  256 (356)
T ss_dssp             CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----------
T ss_pred             CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeecc
Confidence            999999999988 67789999999999999999999999888876443   5778899999999876542        23


Q ss_pred             CCceeEEEEeCCCCeeeeeee-----cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCc
Q 001352          553 EGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  627 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  627 (1093)
                      ..++.|++||..+++.+..+.     +|.   ..+.+..++  +..+++++.|++|+|||+.+++++.++..|.. ..+.
T Consensus       257 s~D~tIklWd~~tgk~l~v~~~~~p~Gh~---~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~-~vvs  330 (356)
T 2w18_A          257 SPVFQLIVINPKTTLSVGVMLYCLPPGQA---GRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSD-QHWS  330 (356)
T ss_dssp             -CCEEEEEEETTTTEEEEEEEECCCTTCC---CCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC---CCCC
T ss_pred             CCCcEEEEEECCCCEEEEEEEeeccCCCc---ceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCC-CeEE
Confidence            458899999999999877652     443   344444443  78899999999999999999999999976543 2244


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEEc
Q 001352          628 RICFNKNGTLLAVIANENRIKILET  652 (1093)
Q Consensus       628 ~v~~s~~~~~l~~~~~dg~i~iw~~  652 (1093)
                      .++|+|||++|++|+.|++|+|||.
T Consensus       331 ~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          331 FVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCCEEEEEECCCcEEEecC
Confidence            6899999999999999999999985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=1.6e-27  Score=269.85  Aligned_cols=272  Identities=7%  Similarity=-0.013  Sum_probs=178.8

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-----
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----  407 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-----  407 (1093)
                      .|...+....+++++. +||+|+.|++|+|||+.++.......+              ..+.+|.+.|.+++|+|     
T Consensus        87 ~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~--------------~~~~gH~~~v~~v~~~p~~~~~  151 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVL--------------GGKSGHHNFVNDIDIADVYSAD  151 (393)
T ss_dssp             ----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEE--------------CTTTSCSSCEEEEEEEEEECTT
T ss_pred             ccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeee--------------cccCCCCCceEEEEEccccccc
Confidence            4555566667777776 699999999999999999876543221              12789999999999998     


Q ss_pred             ---CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec
Q 001352          408 ---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  484 (1093)
Q Consensus       408 ---dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  484 (1093)
                         ||++||+|+.|++|+|||+.++..+.   .+.+|..+|.+++|+|++.. +|++++.|++|++||+.+++.......
T Consensus       152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~  227 (393)
T 4gq1_A          152 NRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQ  227 (393)
T ss_dssp             CSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-------
T ss_pred             cCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccc
Confidence               89999999999999999998875443   56679999999999999864 799999999999999999988776654


Q ss_pred             CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEc-cCCCEEEEEecCCCCceeEEEEeC
Q 001352          485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNE  563 (1093)
Q Consensus       485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~  563 (1093)
                      +.......++.....                   ..........+...+.++.|+ +|++.+++++.    ++.+++||+
T Consensus       228 ~~~~~~~~~~s~~~~-------------------~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~  284 (393)
T 4gq1_A          228 TELVKNPWLLTLNTL-------------------PLVNTCHSSGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNL  284 (393)
T ss_dssp             ---CSCCCSEEEESG-------------------GGC------CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC
T ss_pred             cCCcccceEEecccc-------------------cceeeeecccccccceeeeeecCCCCEEEEEeC----CCCEEEEEC
Confidence            443332222211111                   011111223466678888886 79999999876    677999999


Q ss_pred             CCCeeeeeeecccccCCCeEE------------------EEEcC-CC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCC
Q 001352          564 SEGAIKRTYQGLQLQHNSVSV------------------VHFDT-AK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL  623 (1093)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~v~~------------------v~~~~-~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  623 (1093)
                      .++.....+..+.   ..+..                  ..++| .+ .++++|+.||.|++||..+++.......+.  
T Consensus       285 ~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~--  359 (393)
T 4gq1_A          285 FANNDYNEISDST---MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG--  359 (393)
T ss_dssp             ----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS--
T ss_pred             ccCCCCceEeeec---CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC--
Confidence            9887666655443   22222                  22333 23 355668899999999999998887776554  


Q ss_pred             CCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352          624 PENPRICFNKNGTLLAVIANENRIKILET  652 (1093)
Q Consensus       624 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  652 (1093)
                      ..|.+++|+|||++||+++.+| +.+|++
T Consensus       360 ~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          360 MPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            3699999999999999999766 555554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=7.5e-26  Score=256.12  Aligned_cols=276  Identities=11%  Similarity=0.082  Sum_probs=181.1

Q ss_pred             CCccEEEEEecCCeEEEEEcCCCCceE-----EecCCCCceEEEEEcc--------CCCEEEEEecCCCCceeEEEEeCC
Q 001352          498 ENIHFIFSISVDGKIKAWLYDSLGARV-----DYDAPGLGCTRMAYSA--------NGRRLFSCGTSKEGESFLVEWNES  564 (1093)
Q Consensus       498 ~~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~v~~~~~s~--------d~~~l~~~~~~~~~~~~i~iwd~~  564 (1093)
                      +++.+|++++.|++|++||.+.+....     .+.+|...|.+++|+|        |+++|++++.    |++|++||+.
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~----D~tv~~Wd~~  174 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD----DCTLIIWRLT  174 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET----TSEEEEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC----CCeEEEEECC
Confidence            356789999999999999998876533     3567889999999998        8999999986    7789999999


Q ss_pred             CCeeeeeeecccccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC
Q 001352          565 EGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  643 (1093)
Q Consensus       565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  643 (1093)
                      ++..+..+.+|.   ..+.+++|+|++. +|++++.||+|++||+.+++................+.+.+....      
T Consensus       175 ~~~~~~~~~~~~---~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~------  245 (393)
T 4gq1_A          175 DEGPILAGYPLS---SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV------  245 (393)
T ss_dssp             TTEEEEEEEECS---SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred             CCceeeeecCCC---CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce------
Confidence            988888888777   8999999999875 788999999999999998776554432211100011111000000      


Q ss_pred             CCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcc
Q 001352          644 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE  723 (1093)
Q Consensus       644 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~  723 (1093)
                                                                              .                       
T Consensus       246 --------------------------------------------------------~-----------------------  246 (393)
T 4gq1_A          246 --------------------------------------------------------N-----------------------  246 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------e-----------------------
Confidence                                                                    0                       


Q ss_pred             ccccccCccccccceEEEEee-cCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCC
Q 001352          724 CQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS  802 (1093)
Q Consensus       724 ~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  802 (1093)
                          .....+|...+.++.|+ ++++.+++++.|+.+++|++....                                  
T Consensus       247 ----~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~----------------------------------  288 (393)
T 4gq1_A          247 ----TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN----------------------------------  288 (393)
T ss_dssp             ---------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------------------------
T ss_pred             ----eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC----------------------------------
Confidence                00001134455566665 677777777777777777643210                                  


Q ss_pred             CCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeee
Q 001352          803 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK  882 (1093)
Q Consensus       803 ~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~  882 (1093)
                                 +...+..   ....++........+....+...+..+.+.+.++.++++|+.||.|++||+.+++.+..
T Consensus       289 -----------~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~  354 (393)
T 4gq1_A          289 -----------DYNEISD---STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSI  354 (393)
T ss_dssp             -----------------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEE
T ss_pred             -----------CCceEee---ecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence                       1111111   11122222222222333334444444555554566778899999999999999999888


Q ss_pred             cccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352          883 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       883 l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~  918 (1093)
                      +.+|..+|.+++|||||++||+++.+| +.+|.+..
T Consensus       355 ~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          355 PIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence            888999999999999999999999887 77776643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=3.2e-25  Score=252.19  Aligned_cols=305  Identities=9%  Similarity=0.032  Sum_probs=239.8

Q ss_pred             CCceeeeecCCCceEEEEEc----cCC----cEEEEec--CCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352          336 SSPMSMDFHPVQHTLLLVGT----NVG----DTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  405 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  405 (1093)
                      ..|...+|++.|..++++|+    .+|    +|+|||+  .+++.+....                 +.+|...+..+++
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~  125 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAGH  125 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHHH
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHHH
Confidence            47888999999987788886    357    8999999  9998775433                 4567777777776


Q ss_pred             CC--------------CCCEEEEEEcC------CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC
Q 001352          406 SP--------------DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD  465 (1093)
Q Consensus       406 s~--------------dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d  465 (1093)
                      ++              .+.++++++.+      +.|++||+.++. .+   .+.+|...|.+++|+|||+  .|++++.+
T Consensus       126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~  199 (415)
T 2hqs_A          126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE  199 (415)
T ss_dssp             HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred             HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence            64              26777777664      799999998543 33   5678999999999999999  78888877


Q ss_pred             C---cEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEE-EEecCCe--EEEEEcCCCCceEEecCCCCceEEEEEc
Q 001352          466 K---TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMAYS  539 (1093)
Q Consensus       466 ~---~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s  539 (1093)
                      +   .|++||+.+++.. .+..|...+.+++|+|  ||+.|+ +++.++.  |++||+.+++. ..+..+...+.+++|+
T Consensus       200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s  275 (415)
T 2hqs_A          200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF  275 (415)
T ss_dssp             TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred             CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence            5   9999999999875 5667888999999955  667776 6666655  99999987654 5566677789999999


Q ss_pred             cCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEE
Q 001352          540 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTT  616 (1093)
Q Consensus       540 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~  616 (1093)
                      |||++|++++.. ++...|++||+.+++.. .+..+.   ..+..++|+|+|++|++++.+   +.|++||+.+++.. .
T Consensus       276 pdg~~l~~~s~~-~g~~~i~~~d~~~~~~~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~  349 (415)
T 2hqs_A          276 PDSQNLAFTSDQ-AGRPQVYKVNINGGAPQ-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-V  349 (415)
T ss_dssp             TTSSEEEEEECT-TSSCEEEEEETTSSCCE-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-E
T ss_pred             CCCCEEEEEECC-CCCcEEEEEECCCCCEE-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-E
Confidence            999999988742 23457999999888743 333333   578899999999999987754   58999999998874 3


Q ss_pred             EecCCCCCCCceEEEecCCCEEEEEECCC---eEEEEEcCCCceeeecccccccceeeeecCCC
Q 001352          617 IDAGGGLPENPRICFNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPIS  677 (1093)
Q Consensus       617 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~  677 (1093)
                      +..+   ..+.+++|+|+|++|++++.++   .|++|++. +.....+..+...+.+++|+|..
T Consensus       350 l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          350 LSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             CCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred             ecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence            3332   2588999999999999988876   79999987 45567788899999999999754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=6.9e-24  Score=241.21  Aligned_cols=307  Identities=13%  Similarity=0.113  Sum_probs=228.9

Q ss_pred             ccccEEEEEeeCCCCcEEEEEEc----CCC----cEEEEEC--CCCcee--EEeecCCCCeEEeeeccc-----------
Q 001352          441 HVGNVNDLAFSAPCKQISVITCG----DDK----TIKVWDA--VTGSRT--YSFEGHGAPVYSLCPHAK-----------  497 (1093)
Q Consensus       441 h~~~v~~~~~s~d~~~l~l~s~~----~d~----~i~vwd~--~~~~~~--~~~~~h~~~v~~~~~~~~-----------  497 (1093)
                      +...+...+|.+.|.. ++++|+    .||    +|++||+  .+++++  ..+.+|...+..+++.+.           
T Consensus        61 ~~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~  139 (415)
T 2hqs_A           61 SAQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK  139 (415)
T ss_dssp             SGGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred             cccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence            3356788899999876 566775    567    8999999  999987  458889888887776542           


Q ss_pred             -CCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352          498 -ENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  570 (1093)
Q Consensus       498 -~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~  570 (1093)
                       ..+..++.++.+      +.|++||++. .....+..+...+.+++|+|||++|++++.++ +...|++||+.+++.. 
T Consensus       140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-  216 (415)
T 2hqs_A          140 GAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-  216 (415)
T ss_dssp             CCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-
T ss_pred             CcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-
Confidence             113466666654      7999999975 44566666778999999999999999987532 2468999999998875 


Q ss_pred             eeecccccCCCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC-CC-
Q 001352          571 TYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-EN-  645 (1093)
Q Consensus       571 ~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg-  645 (1093)
                      .+..+.   ..+.+++|+|+|++|+ +++.++.  |++||+.+++.. .+..+  ...+.+++|+|||++|++++. ++ 
T Consensus       217 ~l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~  290 (415)
T 2hqs_A          217 QVASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDG--RSNNTEPTWFPDSQNLAFTSDQAGR  290 (415)
T ss_dssp             EEECCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCC--SSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             EeecCC---CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcCC--CCcccceEECCCCCEEEEEECCCCC
Confidence            455555   6899999999999888 5665554  999999988763 34333  345789999999999988876 34 


Q ss_pred             -eEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccc
Q 001352          646 -RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC  724 (1093)
Q Consensus       646 -~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~  724 (1093)
                       .|++|++.++.... +                                                               
T Consensus       291 ~~i~~~d~~~~~~~~-l---------------------------------------------------------------  306 (415)
T 2hqs_A          291 PQVYKVNINGGAPQR-I---------------------------------------------------------------  306 (415)
T ss_dssp             CEEEEEETTSSCCEE-C---------------------------------------------------------------
T ss_pred             cEEEEEECCCCCEEE-E---------------------------------------------------------------
Confidence             45555654331000 0                                                               


Q ss_pred             cccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCC
Q 001352          725 QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE  804 (1093)
Q Consensus       725 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  804 (1093)
                                                                                               .  .+..
T Consensus       307 -------------------------------------------------------------------------~--~~~~  311 (415)
T 2hqs_A          307 -------------------------------------------------------------------------T--WEGS  311 (415)
T ss_dssp             -------------------------------------------------------------------------C--CSSS
T ss_pred             -------------------------------------------------------------------------e--cCCC
Confidence                                                                                     0  0223


Q ss_pred             CeeEEEEccCCCEEEEEe-C---CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC---eEEEEEcCCc
Q 001352          805 AVPCFALSKNDAYLFSAS-G---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSS  877 (1093)
Q Consensus       805 ~v~~l~~s~dg~~la~~~-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg---~i~iwd~~~~  877 (1093)
                      .+.+++|+|||++|++++ +   ..|.+||+.+++. ..+..+. .+.+++|+| ++++|++++.++   .|++||+. +
T Consensus       312 ~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g  387 (415)
T 2hqs_A          312 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-G  387 (415)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-S
T ss_pred             cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-C
Confidence            455677888888777765 2   4799999998876 3455554 899999999 899998888777   89999987 5


Q ss_pred             ceeeecccccCCeEEEEEeCCCC
Q 001352          878 EVISKLEGHSKRVTGLVFSDALN  900 (1093)
Q Consensus       878 ~~~~~l~~h~~~V~~l~~s~dg~  900 (1093)
                      +....+.+|.+.|.+++|+|.-.
T Consensus       388 ~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          388 RFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             CCEEECCCSSSEEEEEEECCCCC
T ss_pred             CcEEEeeCCCCCCcCCccccccc
Confidence            66788999999999999999643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=2.6e-23  Score=257.76  Aligned_cols=303  Identities=14%  Similarity=0.081  Sum_probs=213.5

Q ss_pred             CCCceeeeecCCCceEEEEEcc-CC-----cEEEEecCCCceeEEeeeeeeecccc-----cceeeeeeecCCCCCeEEE
Q 001352          335 SSSPMSMDFHPVQHTLLLVGTN-VG-----DTGLWDVNSGQKLFIRNFKVWDIGAC-----SMLFKTALVRDPGVSVNRV  403 (1093)
Q Consensus       335 ~~~V~~~~~spdg~~llasg~~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~h~~~V~~v  403 (1093)
                      ...|.+++|||||++ |++++. |+     .|++||+.+++........-.....+     ....+..........|.++
T Consensus        36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            447999999999996 677666 88     89999999998764321100000000     0000000000000348899


Q ss_pred             EECCCCCEEEEEEcCCEEEEEEccCCC--cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352          404 VWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  481 (1093)
Q Consensus       404 ~~s~dg~~las~~~d~~i~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  481 (1093)
                      +|||||++|++++. +.|++||+.++.  ...   .+..|...+.+++|||||+  +|+.++ ++.|++||+.+++....
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence            99999999999986 899999999872  233   3567888999999999999  677776 56899999999887665


Q ss_pred             eecCCCC----------------eEEeeecccCCccEEEEEecCC---------------------------------eE
Q 001352          482 FEGHGAP----------------VYSLCPHAKENIHFIFSISVDG---------------------------------KI  512 (1093)
Q Consensus       482 ~~~h~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~i  512 (1093)
                      ...+...                +..++|  ++||++|++++.|+                                 .|
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            5444432                356777  55778899888766                                 78


Q ss_pred             EEEEcCC-CCceEEec--CCCCceEEEEEccCCCEEEEEec-CCCCceeEEEEeCCCCeeeeeeecccccCC---CeEEE
Q 001352          513 KAWLYDS-LGARVDYD--APGLGCTRMAYSANGRRLFSCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVV  585 (1093)
Q Consensus       513 ~vwd~~~-~~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~v  585 (1093)
                      .+||+.+ ++......  .+...+..++| |||++|++... ....+..|++||+.+++....+..+.  ..   .+..+
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~  342 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPLHNSL  342 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCCCSCC
T ss_pred             EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCcCCce
Confidence            8899987 66554433  35567899999 99999997764 23346789999999998877776554  12   35688


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECC-CCceEEEEecCCCCCCCceE-EEecCCCEEEEEEC-CC--eEEEEEcC
Q 001352          586 HFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIAN-EN--RIKILETP  653 (1093)
Q Consensus       586 ~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~-dg--~i~iw~~~  653 (1093)
                      +|+|+|+.+++++.+|.+.||.+. ++. ...+..+  ...+..+ +|+|+|+.++..+. ++  .+++|++.
T Consensus       343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            999999988888999988888765 344 5555433  2346666 59999998765554 44  78888875

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=1e-22  Score=252.33  Aligned_cols=331  Identities=11%  Similarity=0.017  Sum_probs=236.6

Q ss_pred             cccEEEEEeeCCCCcEEEEEEcC-CC-----cEEEEECCCCceeEEeecCCCC------------------------eEE
Q 001352          442 VGNVNDLAFSAPCKQISVITCGD-DK-----TIKVWDAVTGSRTYSFEGHGAP------------------------VYS  491 (1093)
Q Consensus       442 ~~~v~~~~~s~d~~~l~l~s~~~-d~-----~i~vwd~~~~~~~~~~~~h~~~------------------------v~~  491 (1093)
                      ...+.+++|||||+  +|++++. |+     .|++||+.+++....+..+...                        +.+
T Consensus        36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred             CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence            45689999999999  7888887 88     8999999999887777654432                        677


Q ss_pred             eeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeee
Q 001352          492 LCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  569 (1093)
Q Consensus       492 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~  569 (1093)
                      ++|  ++||++|++++. +.|++||+.++.  ....+..+...+..++|||||++|++++.     +.|++||+.+++..
T Consensus       114 ~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-----~~i~~~d~~~g~~~  185 (741)
T 2ecf_A          114 YQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-----RNLWVIDLASGRQM  185 (741)
T ss_dssp             CEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-----TEEEEEETTTTEEE
T ss_pred             eEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-----CcEEEEecCCCCEE
Confidence            777  457788998886 999999998873  34455566678999999999999998863     36999999998876


Q ss_pred             eeeecccc-------------cCCCeEEEEEcCCCCEEEEEeCCC---------------------------------cE
Q 001352          570 RTYQGLQL-------------QHNSVSVVHFDTAKDQILAAGDDH---------------------------------VI  603 (1093)
Q Consensus       570 ~~~~~~~~-------------~~~~v~~v~~~~~~~~l~~~~~dg---------------------------------~i  603 (1093)
                      +....+..             ....+..++|+|||++|++++.|+                                 .|
T Consensus       186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            65544320             001147799999999999987665                                 78


Q ss_pred             EEEECCC-CceEEEEecCCCCCCCceEEEecCCCEEEEEEC-----CCeEEEEEcCCCceeeecccccccceeeeecCCC
Q 001352          604 KIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-----ENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS  677 (1093)
Q Consensus       604 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~  677 (1093)
                      ++||+.+ ++.........+...+..++| |||++|++++.     +..|++||+.+++.......              
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--------------  330 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE--------------  330 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE--------------
T ss_pred             EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc--------------
Confidence            9999988 876554332123345788999 99999987764     45566776654422111100              


Q ss_pred             ceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccc
Q 001352          678 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG  757 (1093)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg  757 (1093)
                                                                                                  ..+ 
T Consensus       331 ----------------------------------------------------------------------------~~~-  333 (741)
T 2ecf_A          331 ----------------------------------------------------------------------------TSP-  333 (741)
T ss_dssp             ----------------------------------------------------------------------------ECS-
T ss_pred             ----------------------------------------------------------------------------CCC-
Confidence                                                                                        000 


Q ss_pred             eeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcc-Cce
Q 001352          758 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM-TFK  835 (1093)
Q Consensus       758 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~-~~~  835 (1093)
                                                                 .....+..++|+|||+++++++ +|.++||.+. +++
T Consensus       334 -------------------------------------------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~  370 (741)
T 2ecf_A          334 -------------------------------------------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK  370 (741)
T ss_dssp             -------------------------------------------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC
T ss_pred             -------------------------------------------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC
Confidence                                                       0001233567888888776665 4666666654 344


Q ss_pred             eEEEECCCCCCeEEE-EEcCCCCCEEE-EEeCCC--eEEEEEcCC-cceeeecccccCCeEEEEEeCCCCEEEEEeCC--
Q 001352          836 TILTIMPPSPTATSL-AFNPHDNNVIA-IGMDDS--TILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGD--  908 (1093)
Q Consensus       836 ~~~~~~~~~~~i~~l-~~s~~d~~~la-sg~~dg--~i~iwd~~~-~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d--  908 (1093)
                       ...+..+...+..+ +|+| +++.|+ +++.++  .++||++.. ++....+.+ ...+..++|||||++|+....+  
T Consensus       371 -~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~  447 (741)
T 2ecf_A          371 -AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNS  447 (741)
T ss_dssp             -EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETT
T ss_pred             -eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCC
Confidence             67777788888887 5999 777664 555555  899999874 565667765 6678899999999998876544  


Q ss_pred             --CcEEEEeCCCCc
Q 001352          909 --AQIFVWDVDGWG  920 (1093)
Q Consensus       909 --g~i~iwd~~~~~  920 (1093)
                        ..+.+|+..++.
T Consensus       448 ~p~~~~l~~~~~~~  461 (741)
T 2ecf_A          448 TPPQIELFRANGEK  461 (741)
T ss_dssp             EEEEEEEEETTSCE
T ss_pred             CCCeEEEEEcCCCe
Confidence              468899986643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=6.4e-23  Score=253.52  Aligned_cols=386  Identities=11%  Similarity=0.077  Sum_probs=255.7

Q ss_pred             ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC---------Cc
Q 001352          532 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HV  602 (1093)
Q Consensus       532 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d---------g~  602 (1093)
                      ...+++|+|||+++++ +.    ++.|++||+.+++....+.++......+.+++|+|||++|++++.+         +.
T Consensus        18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~   92 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY   92 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred             cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence            3567899999997755 32    5579999999999887777665211248999999999999998764         78


Q ss_pred             EEEEECCCCceEEEEec-CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceee
Q 001352          603 IKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG  681 (1093)
Q Consensus       603 i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  681 (1093)
                      +++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|+..++........+...+             
T Consensus        93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~-------------  157 (723)
T 1xfd_A           93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV-------------  157 (723)
T ss_dssp             EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------------
T ss_pred             EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------------
Confidence            88999999887 33332 222334788999999999999987 799999998765543332211110             


Q ss_pred             eeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecc-ceeE
Q 001352          682 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHL  760 (1093)
Q Consensus       682 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~v~  760 (1093)
                                          +..+-.     -|-.+              ..-...+.+++|||||+.|++++.+ +.+.
T Consensus       158 --------------------~~~g~~-----~~v~~--------------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~  198 (723)
T 1xfd_A          158 --------------------IYNGLS-----DWLYE--------------EEILKTHIAHWWSPDGTRLAYAAINDSRVP  198 (723)
T ss_dssp             --------------------EEEEEC-----CHHHH--------------HTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred             --------------------eECccc-----ceeEE--------------EEeccCcceEEECCCCCEEEEEEECCCccc
Confidence                                000000     00000              0011245789999999999988765 4667


Q ss_pred             EeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEE
Q 001352          761 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI  840 (1093)
Q Consensus       761 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~  840 (1093)
                      +|++....                    +           .+...+..+.|+++|..   ..+..|.+||+.+++....+
T Consensus       199 ~~~~~~~~--------------------~-----------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l  244 (723)
T 1xfd_A          199 IMELPTYT--------------------G-----------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEM  244 (723)
T ss_dssp             EEEECCCS--------------------S-----------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEEC
T ss_pred             eEEeeccC--------------------C-----------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEe
Confidence            77654211                    0           02234678888888863   12357999999998876666


Q ss_pred             CCC------CCCeEEEEEcCCCCCEEEEEeC----CCeEEEEEcCCcceeeeccc-ccCCeE----EEEEeCCCCEEEE-
Q 001352          841 MPP------SPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEVISKLEG-HSKRVT----GLVFSDALNILVS-  904 (1093)
Q Consensus       841 ~~~------~~~i~~l~~s~~d~~~lasg~~----dg~i~iwd~~~~~~~~~l~~-h~~~V~----~l~~s~dg~~l~s-  904 (1093)
                      ..+      ...+..++||| |+++|++...    +..|++||+.+++....+.. |.+.+.    .++|||||+.|+. 
T Consensus       245 ~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          245 MPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             CCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             eCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence            654      56789999999 8988877653    35899999999987766544 334443    7899999998775 


Q ss_pred             -EeCCC------cEEEEe-CCCCceeeeeeeecCCCcccCCCCceE-EEEccCCCEEEE-EeC---CeEEEEEcCCcc--
Q 001352          905 -SGGDA------QIFVWD-VDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQTRFLL-VHE---THLAIYEAEELT--  969 (1093)
Q Consensus       905 -~s~dg------~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~dg~~l~~-~~d---~~i~vwd~~~~~--  969 (1093)
                       +..++      .|.+|| ..+++...  ......++.    .+.. ++|||||+.|+. +.+   +.++||++....  
T Consensus       324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~  397 (723)
T 1xfd_A          324 RAIPQGGRGKFYHITVSSSQPNSSNDN--IQSITSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF  397 (723)
T ss_dssp             EEECCSSSSCEEEEEEECSSCCSSSCC--CCBSCCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC
T ss_pred             EecccCCCcceeEEEEEeccCCCCccc--eeEeecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC
Confidence             45666      566777 34432000  111112222    2444 699999999986 444   679999986432  


Q ss_pred             eeeeeecC--CCCCEEEEEEccCCCEEEEEeCC-C--cEEEEEcCCCceEEEe
Q 001352          970 CLKQWFPI--SSVPISQATFSCDCRMVFTSFVD-G--TLSIHEASNLEVQCRI 1017 (1093)
Q Consensus       970 ~~~~~~~~--h~~~v~~~~fs~dg~~l~t~~~d-g--~v~vwd~~~~~~~~~~ 1017 (1093)
                      ....+...  |...+..++|||||++|+..... +  .+.+++..++..+..+
T Consensus       398 ~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~  450 (723)
T 1xfd_A          398 NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL  450 (723)
T ss_dssp             CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred             CcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence            23332222  56778899999999988865432 2  3455676666554444

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=3.7e-23  Score=255.65  Aligned_cols=312  Identities=9%  Similarity=0.079  Sum_probs=223.9

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCC---CeEEEEECCCCCEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLG  413 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~s~dg~~la  413 (1093)
                      .+.+++|||||++ +++ +.||+|++||+.+++....                   +.+|..   .|.+++|||||++||
T Consensus        18 ~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~   76 (723)
T 1xfd_A           18 HDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL   76 (723)
T ss_dssp             CCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred             cccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence            5789999999994 666 6899999999999987643                   444554   499999999999999


Q ss_pred             EEEcC---------CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec
Q 001352          414 VAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  484 (1093)
Q Consensus       414 s~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  484 (1093)
                      +++.+         +.+.+||+.+++. +.+....+|...+..++|||||+  .|+.++. +.|++||+.+++..+....
T Consensus        77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~  152 (723)
T 1xfd_A           77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST  152 (723)
T ss_dssp             EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred             EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence            99764         7889999999875 22222335666689999999999  5777664 7999999999988776655


Q ss_pred             CCCCe------------------EEeeecccCCccEEEEEecCC----------------------------------eE
Q 001352          485 HGAPV------------------YSLCPHAKENIHFIFSISVDG----------------------------------KI  512 (1093)
Q Consensus       485 h~~~v------------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i  512 (1093)
                      +...+                  .+++|  ++||+.|++++.|+                                  .|
T Consensus       153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l  230 (723)
T 1xfd_A          153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL  230 (723)
T ss_dssp             CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred             CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence            44433                  67777  55778898887653                                  79


Q ss_pred             EEEEcCCCCceEEecCC------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCe----
Q 001352          513 KAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV----  582 (1093)
Q Consensus       513 ~vwd~~~~~~~~~~~~~------~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v----  582 (1093)
                      ++||+.+++....+..+      ...+..++|+|||+++++.......+..|++||+.+++....+..+.  ...+    
T Consensus       231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~  308 (723)
T 1xfd_A          231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQN  308 (723)
T ss_dssp             EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCC
T ss_pred             EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccC
Confidence            99999887765555543      45788999999999987776544456789999999998777665432  1223    


Q ss_pred             EEEEEcCCCCEEEE--EeCCC------cEEEEE-CCCCce--EEEEecCCCCCCCce-EEEecCCCEEEEEECC---CeE
Q 001352          583 SVVHFDTAKDQILA--AGDDH------VIKIWD-MNKVQL--LTTIDAGGGLPENPR-ICFNKNGTLLAVIANE---NRI  647 (1093)
Q Consensus       583 ~~v~~~~~~~~l~~--~~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~~~~l~~~~~d---g~i  647 (1093)
                      ..++|+|||+.|+.  +..++      .|++|| ..++..  ...+...  ...+.. ++|+|||+.|+..+.+   +.+
T Consensus       309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~  386 (723)
T 1xfd_A          309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRR  386 (723)
T ss_dssp             CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred             CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcce
Confidence            37899999998775  44666      577777 344441  3333321  122333 6899999999877665   789


Q ss_pred             EEEEcCCCc--eeeeccc---ccccceeeeecCCCce
Q 001352          648 KILETPESN--SVDAAGV---LSDNLRKLSVNPISTV  679 (1093)
Q Consensus       648 ~iw~~~~~~--~~~~~~~---~~~~i~~~~~~~~~~~  679 (1093)
                      ++|++....  ....+..   +...+..++|+|++..
T Consensus       387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~  423 (723)
T 1xfd_A          387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDF  423 (723)
T ss_dssp             EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSE
T ss_pred             EEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCE
Confidence            999986432  2333332   3455666777654443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=1.8e-21  Score=215.28  Aligned_cols=282  Identities=10%  Similarity=0.056  Sum_probs=207.0

Q ss_pred             eeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc-CC
Q 001352          341 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KH  419 (1093)
Q Consensus       341 ~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~-d~  419 (1093)
                      +.|.+++++++++++.++.|.+||..+++.+..                   +..+...+ +++|+|||++|++++. ++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~   62 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ   62 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence            467788888899999999999999999988764                   22345566 9999999998777765 88


Q ss_pred             EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-C--cEEEEECCCCceeEEeecCCCCeEEeeecc
Q 001352          420 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  496 (1093)
Q Consensus       420 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~  496 (1093)
                      .|.+||..+++..  ...+..+..+..+++|+|||+  +++++..+ +  .|.+||+.+++.+..+..+ .....++|+|
T Consensus        63 ~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~sp  137 (331)
T 3u4y_A           63 TLVQIETQLEPPK--VVAIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISP  137 (331)
T ss_dssp             EEEEEECSSSSCE--EEEEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECT
T ss_pred             eEEEEECCCCcee--EEecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECC
Confidence            9999999998751  224555666665699999999  56655544 3  8999999999998887654 4468888855


Q ss_pred             cCCccEE-EEEecCCe-EEEEEcCCCCceE----EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee--
Q 001352          497 KENIHFI-FSISVDGK-IKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--  568 (1093)
Q Consensus       497 ~~~~~~l-~s~~~dg~-i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--  568 (1093)
                        +|+++ ++...++. |.+|+++......    ...........++|+|+|++++++..   .++.|.+||+.+++.  
T Consensus       138 --dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~  212 (331)
T 3u4y_A          138 --NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT  212 (331)
T ss_dssp             --TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred             --CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence              55544 45556688 9999998655432    22233456789999999998777653   256799999999988  


Q ss_pred             -eeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce--EEEEecC----CC-CCCCceEEEecCCCEEE
Q 001352          569 -KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL--LTTIDAG----GG-LPENPRICFNKNGTLLA  639 (1093)
Q Consensus       569 -~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~~~~l~  639 (1093)
                       +..+...    ..+..++|+|++++++++. .++.|.+||..+++.  +..+...    .. ......++|+|+|++|+
T Consensus       213 ~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  288 (331)
T 3u4y_A          213 LLNAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF  288 (331)
T ss_dssp             EEEEEECS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred             eeeeccCC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence             6666543    4678899999999877654 578899999999887  4444322    11 11124589999999887


Q ss_pred             EEEC-CCeEEEEEcCCCc
Q 001352          640 VIAN-ENRIKILETPESN  656 (1093)
Q Consensus       640 ~~~~-dg~i~iw~~~~~~  656 (1093)
                      +++. ++.|.+|++....
T Consensus       289 v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          289 ISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEETTTTEEEEEETTSCE
T ss_pred             EecCCCCcEEEEEecCCc
Confidence            6665 5699999998653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=4.9e-21  Score=214.00  Aligned_cols=274  Identities=11%  Similarity=0.085  Sum_probs=213.5

Q ss_pred             CCceeeeecCCCceEEEEEcc------CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCC
Q 001352          336 SSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  409 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg  409 (1093)
                      ..+..++|+|||++++++...      ++.|.+||..+++.+....                    ....+..++|+|||
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~s~dg  100 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATINNTT  100 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEEETTT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEECCCC
Confidence            478899999999975555433      6789999999998776422                    23457789999999


Q ss_pred             CEEEEE-EcCCEEEEEEccCCCcccceEEeccccc---------cEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352          410 SLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVG---------NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  479 (1093)
Q Consensus       410 ~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~---------~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  479 (1093)
                      ++++++ ..++.|.+||..+++.+.   .+..+..         .+.+++|+|+|+.+++...+.++.|.+||..+++.+
T Consensus       101 ~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~  177 (353)
T 3vgz_A          101 QTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK  177 (353)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred             CEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence            976655 457899999999987554   3333322         278899999999532222246889999999999999


Q ss_pred             EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC----CCCceEEEEEccCCCEEEEEecCCCCc
Q 001352          480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGE  555 (1093)
Q Consensus       480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~~~  555 (1093)
                      ..+..+...+..++|+  +++.++++++.++.|.+||..+.+....+..    +...+..++|+|+|++++++..   .+
T Consensus       178 ~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~  252 (353)
T 3vgz_A          178 TAIQNTGKMSTGLALD--SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KA  252 (353)
T ss_dssp             EEECCCCTTCCCCEEE--TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SS
T ss_pred             EEecCCCCccceEEEC--CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CC
Confidence            9887666667888885  4667899999999999999998877766554    3446788999999998887753   25


Q ss_pred             eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC
Q 001352          556 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  634 (1093)
Q Consensus       556 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  634 (1093)
                      +.|.+||..+++.+..+....     ...++|+|++++++++. .++.|.+||..+++.+..+....   .+..++|+|+
T Consensus       253 ~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~d  324 (353)
T 3vgz_A          253 AEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSAD  324 (353)
T ss_dssp             SEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTT
T ss_pred             CEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCC
Confidence            679999999999888777533     25689999999777655 78999999999999988887653   3688999999


Q ss_pred             CCEEEEEECCC
Q 001352          635 GTLLAVIANEN  645 (1093)
Q Consensus       635 ~~~l~~~~~dg  645 (1093)
                      |++++++..++
T Consensus       325 g~~l~v~~~~~  335 (353)
T 3vgz_A          325 GKTLYVSVKQK  335 (353)
T ss_dssp             SCEEEEEEECC
T ss_pred             CCEEEEEEccc
Confidence            99887776653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=4.4e-21  Score=236.07  Aligned_cols=238  Identities=9%  Similarity=-0.002  Sum_probs=166.1

Q ss_pred             eEEEEECCCCCEEEEEEcCCEEEEEEccCCCcc-cceEEecccc-----------------ccEEEEEeeCCCCcEEEEE
Q 001352          400 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHV-----------------GNVNDLAFSAPCKQISVIT  461 (1093)
Q Consensus       400 V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~-----------------~~v~~~~~s~d~~~l~l~s  461 (1093)
                      +..+.|+  |..+++++.++ | +||+.+++.+ +.   +..|.                 ..|.+++|+|| +  .++.
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~   97 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL   97 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence            4457788  66777777888 8 9999998753 32   22232                 46999999999 5  3443


Q ss_pred             EcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC-----CCceEEecCCCCc----
Q 001352          462 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVDYDAPGLG----  532 (1093)
Q Consensus       462 ~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~----  532 (1093)
                      + .++.|++||+.+++... +..+...+.+++|+  +||+.|+++ .++.|++||+.+     ++...........    
T Consensus        98 ~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g  172 (706)
T 2z3z_A           98 F-TQGGLVGFDMLARKVTY-LFDTNEETASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG  172 (706)
T ss_dssp             E-ETTEEEEEETTTTEEEE-EECCTTCCTTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred             E-ECCEEEEEECCCCceEE-ccCCcccccCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence            3 35999999999887654 44567778888885  477788884 789999999988     6655433333322    


Q ss_pred             ----------eEEEEEccCCCEEEEEecC-----------------------------CCCceeEEEEeCCCCeeeeeee
Q 001352          533 ----------CTRMAYSANGRRLFSCGTS-----------------------------KEGESFLVEWNESEGAIKRTYQ  573 (1093)
Q Consensus       533 ----------v~~~~~s~d~~~l~~~~~~-----------------------------~~~~~~i~iwd~~~~~~~~~~~  573 (1093)
                                +.+++|||||++|++++.+                             ...+..|++||+.+++......
T Consensus       173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~  252 (706)
T 2z3z_A          173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT  252 (706)
T ss_dssp             SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred             cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence                      4789999999999988632                             1235789999999988765543


Q ss_pred             cccccCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEe-cCC--CCCCCceEEEec--CCCEEEEEEC
Q 001352          574 GLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID-AGG--GLPENPRICFNK--NGTLLAVIAN  643 (1093)
Q Consensus       574 ~~~~~~~~v~~v~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~~~--~~~~v~~v~~s~--~~~~l~~~~~  643 (1093)
                      ... +...+..++|+|||+++++++.++     .|++||+.+++....+. ...  ....+..++|+|  ||++++++..
T Consensus       253 ~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~  331 (706)
T 2z3z_A          253 GEP-KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR  331 (706)
T ss_dssp             CSC-TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred             CCC-CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence            211 236789999999999999987765     89999999984333332 111  111246789999  9988888888


Q ss_pred             CCeEEEEEcC
Q 001352          644 ENRIKILETP  653 (1093)
Q Consensus       644 dg~i~iw~~~  653 (1093)
                      ++.+++|.+.
T Consensus       332 ~g~~~l~~~~  341 (706)
T 2z3z_A          332 DGWNHLYLYD  341 (706)
T ss_dssp             TSSCEEEEEE
T ss_pred             CCccEEEEEE
Confidence            8877777654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=1.5e-20  Score=208.94  Aligned_cols=277  Identities=14%  Similarity=0.162  Sum_probs=194.1

Q ss_pred             CceEEEEEccCCcEEEEecC-CCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC-CEEEEE
Q 001352          347 QHTLLLVGTNVGDTGLWDVN-SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLY  424 (1093)
Q Consensus       347 g~~llasg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d-~~i~iw  424 (1093)
                      +++++++++.|+.|.+||+. +++.....                  ...|...+.+++|+|+|++|++++.+ +.|.+|
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~   65 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY   65 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence            34567777889999999996 34322111                  12367789999999999999999886 899999


Q ss_pred             Ecc--CCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC---CCceeEEeecCCCCeEEeeecccCC
Q 001352          425 AYH--GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCPHAKEN  499 (1093)
Q Consensus       425 d~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~  499 (1093)
                      ++.  +++ ......+..+. .+..++|+|+++. +++++..++.|.+||+.   +++.+..+..+ ..+.+++|++  +
T Consensus        66 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~--d  139 (343)
T 1ri6_A           66 RIAPDDGA-LTFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP--D  139 (343)
T ss_dssp             EECTTTCC-EEEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT--T
T ss_pred             EecCCCCc-eeeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC--C
Confidence            998  544 22233444444 7899999999994 33445568899999994   44455555543 3577788854  6


Q ss_pred             ccEEEEEe-cCCeEEEEEcCC-CCceE----EecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC--Cee--
Q 001352          500 IHFIFSIS-VDGKIKAWLYDS-LGARV----DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GAI--  568 (1093)
Q Consensus       500 ~~~l~s~~-~dg~i~vwd~~~-~~~~~----~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~~--  568 (1093)
                      +.++++++ .++.|++||+.+ +....    .... ....+..++|+|+++++++++.   .++.|.+|++..  ++.  
T Consensus       140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~  216 (343)
T 1ri6_A          140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC  216 (343)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred             CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence            67777777 899999999987 43321    2222 3457888999999998877653   256799999953  433  


Q ss_pred             eeeeeccc---ccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECC--C--CceEEEEecCCCCCCCceEEEecCCCEEEE
Q 001352          569 KRTYQGLQ---LQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMN--K--VQLLTTIDAGGGLPENPRICFNKNGTLLAV  640 (1093)
Q Consensus       569 ~~~~~~~~---~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  640 (1093)
                      ........   .....+..++|+|++++++++ ..++.|.+||+.  +  .+.+..+....   .+..++|+|+|++|++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~  293 (343)
T 1ri6_A          217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA  293 (343)
T ss_dssp             EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred             EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence            22222111   012356789999999988854 478999999998  3  33444454432   2789999999999888


Q ss_pred             EE-CCCeEEEEEcC
Q 001352          641 IA-NENRIKILETP  653 (1093)
Q Consensus       641 ~~-~dg~i~iw~~~  653 (1093)
                      ++ .++.+.+|++.
T Consensus       294 ~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          294 AGQKSHHISVYEIV  307 (343)
T ss_dssp             ECTTTCEEEEEEEE
T ss_pred             ecCCCCeEEEEEEc
Confidence            88 57999999554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=5e-21  Score=235.63  Aligned_cols=324  Identities=9%  Similarity=0.079  Sum_probs=220.4

Q ss_pred             EEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee-EEeecCC-----------------CCeEEeeecccCCccEEEEE
Q 001352          445 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHG-----------------APVYSLCPHAKENIHFIFSI  506 (1093)
Q Consensus       445 v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~h~-----------------~~v~~~~~~~~~~~~~l~s~  506 (1093)
                      +..+.|+  |+  .+++++.|+ | +||+.+|+.+ ..+..|.                 ..|.+++|+++  + .++.+
T Consensus        28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd--~-~~~~~   98 (706)
T 2z3z_A           28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR--G-LVVLF   98 (706)
T ss_dssp             CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT--T-EEEEE
T ss_pred             CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC--C-eEEEE
Confidence            4457788  55  466667777 8 9999999873 4443332                 46899999664  3 44444


Q ss_pred             ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-----Ceeeeeeecccc----
Q 001352          507 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-----GAIKRTYQGLQL----  577 (1093)
Q Consensus       507 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-----~~~~~~~~~~~~----  577 (1093)
                       .++.|++||+.+++... +..+...+.+++|||||++|+++.     ++.|++||+.+     ++..+.......    
T Consensus        99 -~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~  171 (706)
T 2z3z_A           99 -TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY  171 (706)
T ss_dssp             -ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred             -ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence             45999999998765443 344556788899999999999864     45799999998     776655444330    


Q ss_pred             -------cCCCeEEEEEcCCCCEEEEEe---------------------------------CCCcEEEEECCCCceEEEE
Q 001352          578 -------QHNSVSVVHFDTAKDQILAAG---------------------------------DDHVIKIWDMNKVQLLTTI  617 (1093)
Q Consensus       578 -------~~~~v~~v~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~  617 (1093)
                             +...+.++.|+|||++|++++                                 .+..|++||+.+++.....
T Consensus       172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~  251 (706)
T 2z3z_A          172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ  251 (706)
T ss_dssp             SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred             ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence                   001247899999999999987                                 4567999999998865544


Q ss_pred             ecCCCCCCCceEEEecCCCEEEEEECCC-----eEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEec
Q 001352          618 DAGGGLPENPRICFNKNGTLLAVIANEN-----RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN  692 (1093)
Q Consensus       618 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  692 (1093)
                      ....+...+..++|+|||+.|++++.++     .|.+||..++.....+.                              
T Consensus       252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~------------------------------  301 (706)
T 2z3z_A          252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLF------------------------------  301 (706)
T ss_dssp             CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE------------------------------
T ss_pred             cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE------------------------------
Confidence            3222334578999999999999887665     77777776542111000                              


Q ss_pred             CCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcC
Q 001352          693 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS  772 (1093)
Q Consensus       693 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~  772 (1093)
                                                                                 .....                
T Consensus       302 -----------------------------------------------------------~~~~~----------------  306 (706)
T 2z3z_A          302 -----------------------------------------------------------VETDK----------------  306 (706)
T ss_dssp             -----------------------------------------------------------EEECS----------------
T ss_pred             -----------------------------------------------------------EccCC----------------
Confidence                                                                       00000                


Q ss_pred             cccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc--CCCEEEEEe-CCeEEEEEcc-CceeEEEECCCCCCeE
Q 001352          773 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK--NDAYLFSAS-GGVISLYIVM-TFKTILTIMPPSPTAT  848 (1093)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~la~~~-dg~i~iwd~~-~~~~~~~~~~~~~~i~  848 (1093)
                                                  .....+.+++|+|  ||+++++++ ++.++||++. +++.+..+..+...+.
T Consensus       307 ----------------------------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~  358 (706)
T 2z3z_A          307 ----------------------------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT  358 (706)
T ss_dssp             ----------------------------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE
T ss_pred             ----------------------------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE
Confidence                                        0111234567888  888777776 5778888776 6677778877777787


Q ss_pred             E-EEEcCCCCCEEEEEe-CCC----eEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCC----CcEEEEeCCC
Q 001352          849 S-LAFNPHDNNVIAIGM-DDS----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----AQIFVWDVDG  918 (1093)
Q Consensus       849 ~-l~~s~~d~~~lasg~-~dg----~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d----g~i~iwd~~~  918 (1093)
                      . ++|+| +++.|+.++ .++    .|+.||+.+++ ...+. |...+.+++|||||++++..+.+    +.|.+||+.+
T Consensus       359 ~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~  435 (706)
T 2z3z_A          359 NFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK  435 (706)
T ss_dssp             EEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred             eeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence            6 89999 777665544 444    67777877765 34444 67779999999999998876544    4699999988


Q ss_pred             Cc
Q 001352          919 WG  920 (1093)
Q Consensus       919 ~~  920 (1093)
                      ++
T Consensus       436 ~~  437 (706)
T 2z3z_A          436 GS  437 (706)
T ss_dssp             CE
T ss_pred             Ce
Confidence            65

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=3.4e-20  Score=206.16  Aligned_cols=205  Identities=9%  Similarity=0.145  Sum_probs=143.9

Q ss_pred             CeeEEEEccCCCEEEEEe--CCeEEEEEc---cCceeEEEECCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCC-c
Q 001352          805 AVPCFALSKNDAYLFSAS--GGVISLYIV---MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-S  877 (1093)
Q Consensus       805 ~v~~l~~s~dg~~la~~~--dg~i~iwd~---~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~i~iwd~~~-~  877 (1093)
                      .+..++|+|+|+++++++  ++.|.+||+   .+++....+.. ...+.+++|+| ++++|++++ .++.|++||+.+ +
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~  162 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDG  162 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCC
Confidence            456788889988777665  578999998   44455555553 34688999999 888777777 899999999987 6


Q ss_pred             ceee----eccc-ccCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCC--CceeeeeeeecCCCcccCCCCceEEEEccCC
Q 001352          878 EVIS----KLEG-HSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  949 (1093)
Q Consensus       878 ~~~~----~l~~-h~~~V~~l~~s~dg~~l~s~s-~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg  949 (1093)
                      +...    .+.. ....+.+++|+|++++|++++ .++.|.+|++..  ++...................+..++|+|||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  242 (343)
T 1ri6_A          163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG  242 (343)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred             ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence            5432    2222 344788999999999776554 789999999954  4433222333222211111246789999999


Q ss_pred             CEEEEE--eCCeEEEEEcC--Cc--ceeeeeecCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcC--CCce
Q 001352          950 TRFLLV--HETHLAIYEAE--EL--TCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEAS--NLEV 1013 (1093)
Q Consensus       950 ~~l~~~--~d~~i~vwd~~--~~--~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~-~dg~v~vwd~~--~~~~ 1013 (1093)
                      ++|+++  .++.|.+||+.  ++  +.+..+. .+. .+..++|+|||++|++++ .++.|.+|+++  ++..
T Consensus       243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~  313 (343)
T 1ri6_A          243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQP-TET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  313 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-CSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             CEEEEEecCCCEEEEEEEcCCCCceEEeeeec-CCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence            988863  57899999998  33  3333322 233 388999999999988887 57999999554  6644

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=4e-20  Score=204.96  Aligned_cols=279  Identities=13%  Similarity=0.087  Sum_probs=203.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEEcCCCceeeeccccccccee
Q 001352          592 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRK  670 (1093)
Q Consensus       592 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~i~~  670 (1093)
                      +++++++.++.|++||..+++.+..+........+..++|+|+|++++++ ..++.|.+||..+++.+..+....     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-----   76 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST-----   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB-----
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC-----
Confidence            47888999999999999999998888754321136789999999876554 557899999987664432221000     


Q ss_pred             eeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceE
Q 001352          671 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI  750 (1093)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  750 (1093)
                                                                                                 .+.  
T Consensus        77 ---------------------------------------------------------------------------~~~--   79 (337)
T 1pby_B           77 ---------------------------------------------------------------------------PEE--   79 (337)
T ss_dssp             ---------------------------------------------------------------------------TTE--
T ss_pred             ---------------------------------------------------------------------------ccc--
Confidence                                                                                       000  


Q ss_pred             EEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE---------
Q 001352          751 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA---------  821 (1093)
Q Consensus       751 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~---------  821 (1093)
                                                                         +...+.+++|+|||++++++         
T Consensus        80 ---------------------------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~  108 (337)
T 1pby_B           80 ---------------------------------------------------RVKSLFGAALSPDGKTLAIYESPVRLELT  108 (337)
T ss_dssp             ---------------------------------------------------EEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred             ---------------------------------------------------ccccccceEECCCCCEEEEEecccccccc
Confidence                                                               00012244555565555555         


Q ss_pred             ----eCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeC
Q 001352          822 ----SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD  897 (1093)
Q Consensus       822 ----~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~  897 (1093)
                          .++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++  ++.|++||+.+++.+..+..+.. ...+.|+|
T Consensus       109 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~  183 (337)
T 1pby_B          109 HFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQP  183 (337)
T ss_dssp             CEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCC
T ss_pred             cccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCC
Confidence                358899999999988887764 45678899999 88888877  68999999999988877665431 11237899


Q ss_pred             CCCEEEEEeCCC------------------------cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEE
Q 001352          898 ALNILVSSGGDA------------------------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL  953 (1093)
Q Consensus       898 dg~~l~s~s~dg------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  953 (1093)
                      |++.++..+.++                        .|.+||+.+++... .....   +.   ..+..++|+|||++++
T Consensus       184 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~---~~---~~~~~~~~s~dg~~l~  256 (337)
T 1pby_B          184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM-REVRI---MD---VFYFSTAVNPAKTRAF  256 (337)
T ss_dssp             BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE-EEEEE---CS---SCEEEEEECTTSSEEE
T ss_pred             CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE-eecCC---CC---CceeeEEECCCCCEEE
Confidence            998776554332                        46899999877541 11111   11   2477899999999998


Q ss_pred             EEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352          954 LVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       954 ~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                      ++ ++.|.+||+.+++.+..+..  ...+.+++|+|||++|++++.++.|.+||+.+++.+..+.
T Consensus       257 ~~-~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          257 GA-YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             Ee-CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence            88 79999999999988776543  3467899999999999999999999999999999988776

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=3.6e-20  Score=205.31  Aligned_cols=280  Identities=10%  Similarity=0.048  Sum_probs=207.6

Q ss_pred             EEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCC-CeEEEEECCCCCEEEEE-EcCCEEEEEEcc
Q 001352          350 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SVNRVVWSPDGSLLGVA-YSKHIVQLYAYH  427 (1093)
Q Consensus       350 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~s~dg~~las~-~~d~~i~iwd~~  427 (1093)
                      ++++++.++.|.+||+.+++.+....                  .++.. .+..++|+|||++++++ ..++.|.+||+.
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~   64 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence            58888999999999999998775421                  12222 47889999999877554 567899999999


Q ss_pred             CCCcccceEEecc---ccccEEEEEeeCCCCcEEEEEEc------------CCCcEEEEECCCCceeEEeecCCCCeEEe
Q 001352          428 GGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRTYSFEGHGAPVYSL  492 (1093)
Q Consensus       428 ~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~l~l~s~~------------~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  492 (1093)
                      +++.+... ....   |...+..++|+|||+  .+++++            .++.|.+||+.+++.+..+.. ...+..+
T Consensus        65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~  140 (337)
T 1pby_B           65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML  140 (337)
T ss_dssp             TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred             CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence            98755422 1111   223677899999999  555554            579999999999998887764 4457777


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC------------------
Q 001352          493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------------------  554 (1093)
Q Consensus       493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~------------------  554 (1093)
                      +|+  +++.+++++  ++.|.+||+.+++....+..... ...+.|+|+++.++..+.....                  
T Consensus       141 ~~s--~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (337)
T 1pby_B          141 AWA--RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT  215 (337)
T ss_dssp             EEC--TTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred             EEC--CCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence            775  466777777  68999999998877666554431 1123789999877655421110                  


Q ss_pred             --ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352          555 --ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       555 --~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  632 (1093)
                        ...|.+||+.+++.. ...... +...+..++|+|++++++++  ++.|++||+.+++.+..+....   .+.+++|+
T Consensus       216 ~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s  288 (337)
T 1pby_B          216 AYRTGLLTMDLETGEMA-MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNVS  288 (337)
T ss_dssp             GEEEEEEEEETTTCCEE-EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEEC
T ss_pred             ccccceEEEeCCCCCce-EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEEC
Confidence              014789999998875 322211 22568889999999999888  7999999999999888877543   36899999


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCCceeeeccc
Q 001352          633 KNGTLLAVIANENRIKILETPESNSVDAAGV  663 (1093)
Q Consensus       633 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  663 (1093)
                      |+|+++++++.++.|.+||+.+++.+..+..
T Consensus       289 ~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          289 TDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            9999999998999999999998877766553

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=1.5e-19  Score=199.76  Aligned_cols=199  Identities=10%  Similarity=0.010  Sum_probs=142.9

Q ss_pred             EEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEec-CCeEEEEEcCCCCc-eEE
Q 001352          448 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGA-RVD  525 (1093)
Q Consensus       448 ~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~-~~~  525 (1093)
                      ..|.++++. ++++++.++.|.+||..+++.+..+..+...+ .++|++  +++++++++. ++.|.+||+.+.+. ...
T Consensus         3 ~~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~   78 (331)
T 3u4y_A            3 AMFQTTSNF-GIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITS--DCSNVVVTSDFCQTLVQIETQLEPPKVVA   78 (331)
T ss_dssp             ----CCCCE-EEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECS--SSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred             eeEcCCCCE-EEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcC--CCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence            456666664 68889999999999999999988887766666 888854  6666665555 89999999998887 556


Q ss_pred             ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEE-eCCCc-E
Q 001352          526 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHV-I  603 (1093)
Q Consensus       526 ~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~-i  603 (1093)
                      +..+.....+++|+|+|+++++... ..+...|.+||+.+++.+..+...    .....++|+|++++++++ ..++. |
T Consensus        79 ~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~i  153 (331)
T 3u4y_A           79 IQEGQSSMADVDITPDDQFAVTVTG-LNHPFNMQSYSFLKNKFISTIPIP----YDAVGIAISPNGNGLILIDRSSANTV  153 (331)
T ss_dssp             EEECSSCCCCEEECTTSSEEEECCC-SSSSCEEEEEETTTTEEEEEEECC----TTEEEEEECTTSSCEEEEEETTTTEE
T ss_pred             cccCCCCccceEECCCCCEEEEecC-CCCcccEEEEECCCCCeEEEEECC----CCccceEECCCCCEEEEEecCCCceE
Confidence            6555555555999999999994432 212238999999999988877653    356899999999876664 56688 9


Q ss_pred             EEEECCCCceEEEE--ecCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCC
Q 001352          604 KIWDMNKVQLLTTI--DAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPES  655 (1093)
Q Consensus       604 ~iwd~~~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~  655 (1093)
                      .+|++.....+...  ..-........++|+|+|+++++++ .++.|.+||+.++
T Consensus       154 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  208 (331)
T 3u4y_A          154 RRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP  208 (331)
T ss_dssp             EEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST
T ss_pred             EEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence            99998764433111  0001112367899999998666555 5788999987754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=1e-20  Score=205.32  Aligned_cols=257  Identities=14%  Similarity=0.121  Sum_probs=187.9

Q ss_pred             EEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccC-CCc
Q 001352          353 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG-GSD  431 (1093)
Q Consensus       353 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~-~~~  431 (1093)
                      .++.|++|++||+.+++...                    +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~   75 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP   75 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred             CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence            34568999999999987653                    334788999999999999999986 78999999998 764


Q ss_pred             ccceEEeccc-cccEEEEEeeCCCCcEEEEEEc--CCCcEEEE--ECCCCceeEEeecCCCCeEEeeecccCCccEEE-E
Q 001352          432 ARQQLEIDAH-VGNVNDLAFSAPCKQISVITCG--DDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-S  505 (1093)
Q Consensus       432 ~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s  505 (1093)
                      ..   ...+| ...+.+++|+||++  ++++++  .++...||  +..+++ ...+..+. .+..++|++  ++..|+ +
T Consensus        76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp--dg~~l~~~  146 (297)
T 2ojh_A           76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP--DGKSFTYC  146 (297)
T ss_dssp             EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT--TSSEEEEE
T ss_pred             eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC--CCCEEEEE
Confidence            43   23344 46789999999999  677776  33445555  545554 44554443 488888854  566666 7


Q ss_pred             EecCCeEEEEEcCCC-CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeeeeeeecccccCCCeE
Q 001352          506 ISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVS  583 (1093)
Q Consensus       506 ~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~  583 (1093)
                      ++.++.+++|+++.. .....+..+...+.+++|+|+|+.+++++..   ++.+.+|++. .+.....+..+.   ..+.
T Consensus       147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---~~~~  220 (297)
T 2ojh_A          147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSA---YGDW  220 (297)
T ss_dssp             EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCS---EEEE
T ss_pred             ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCC---cccC
Confidence            889999999997543 3445566667789999999999998877631   3346666654 344555565554   6788


Q ss_pred             EEEEcCCCCEEEEEeCC-----------CcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352          584 VVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  645 (1093)
Q Consensus       584 ~v~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  645 (1093)
                      .++|+|++++|++++.+           +.|++||+.+++.........+...+..++|+|++++|++++.+.
T Consensus       221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            99999999999987765           569999999887654443222234588999999999998887653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=3.1e-19  Score=199.34  Aligned_cols=248  Identities=13%  Similarity=0.124  Sum_probs=195.6

Q ss_pred             CCCeEEEEECCCCCEEEEEEc-------CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352          397 GVSVNRVVWSPDGSLLGVAYS-------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  469 (1093)
Q Consensus       397 ~~~V~~v~~s~dg~~las~~~-------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  469 (1093)
                      ...+..++|+|+|+++++++.       ++.|.+||..+++.+..   +. ....+..++|+|+|+. ++++...++.|.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v~  114 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---IH-NDLKPFGATINNTTQT-LWFGNTVNSAVT  114 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---EE-ESSCCCSEEEETTTTE-EEEEETTTTEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---Ee-cCCCcceEEECCCCCE-EEEEecCCCEEE
Confidence            356889999999999988874       56899999999875553   32 2345778999999985 456667789999


Q ss_pred             EEECCCCceeEEeecCCCC---------eEEeeecccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCceEEEEE
Q 001352          470 VWDAVTGSRTYSFEGHGAP---------VYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAY  538 (1093)
Q Consensus       470 vwd~~~~~~~~~~~~h~~~---------v~~~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  538 (1093)
                      +||..+++.+..+..+...         +..+++++  ++.++++++  .++.|.+||..+.+....+......+..++|
T Consensus       115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  192 (353)
T 3vgz_A          115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL  192 (353)
T ss_dssp             EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred             EEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence            9999999998888765432         67788854  556666655  4889999999988887777756666889999


Q ss_pred             ccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc-cCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEE
Q 001352          539 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTT  616 (1093)
Q Consensus       539 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~  616 (1093)
                      +|+|++++++..    ++.|.+||..+++....+..... +...+..++|+|+++++++++. ++.|.+||..+++.+..
T Consensus       193 s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  268 (353)
T 3vgz_A          193 DSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK  268 (353)
T ss_dssp             ETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             CCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            999999998864    56799999999998877765221 2356788999999998877664 59999999999999888


Q ss_pred             EecCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCceee
Q 001352          617 IDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVD  659 (1093)
Q Consensus       617 ~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~  659 (1093)
                      +....    ...++|+|+|++++++. .++.|.+||..+++.+.
T Consensus       269 ~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~  308 (353)
T 3vgz_A          269 VAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK  308 (353)
T ss_dssp             EECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence            87543    25799999999776666 68999999998775544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=1.2e-20  Score=232.58  Aligned_cols=378  Identities=12%  Similarity=0.037  Sum_probs=245.2

Q ss_pred             EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeC---------CCcEEE
Q 001352          535 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------DHVIKI  605 (1093)
Q Consensus       535 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~---------dg~i~i  605 (1093)
                      .++|+|||++++++ .    ++.|++||+.+++....+.++......+.+++|+|||++|++++.         ++.|++
T Consensus        20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~   94 (719)
T 1z68_A           20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI   94 (719)
T ss_dssp             CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence            67899999665543 2    556999999999988777765411124889999999999998876         789999


Q ss_pred             EECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeecc
Q 001352          606 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA  685 (1093)
Q Consensus       606 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  685 (1093)
                      ||+.+++.+......   ..+..++|||||+.|+.+. ++.|++|++.++...........                   
T Consensus        95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~-------------------  151 (719)
T 1z68_A           95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE-------------------  151 (719)
T ss_dssp             EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT-------------------
T ss_pred             EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc-------------------
Confidence            999998773111111   3478899999999999986 68999999987754332110000                   


Q ss_pred             CCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecc-ceeEEeee
Q 001352          686 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRW  764 (1093)
Q Consensus       686 ~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~v~vw~~  764 (1093)
                                    ..+..|..+   .++.-                .-.....+++|||||+.|+.++.+ +.+.+|.+
T Consensus       152 --------------~~v~~g~~~---~v~~e----------------e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~  198 (719)
T 1z68_A          152 --------------NKIFNGIPD---WVYEE----------------EMLATKYALWWSPNGKFLAYAEFNDTDIPVIAY  198 (719)
T ss_dssp             --------------TTEEESSCC---HHHHH----------------HTTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             --------------CCeEccccc---ceeee----------------ecccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence                          000000000   00000                001123468999999999988765 55566654


Q ss_pred             cCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeE--EE---
Q 001352          765 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI--LT---  839 (1093)
Q Consensus       765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~--~~---  839 (1093)
                      .....                               .+...+..+.+...|..   .....|++||+.+++..  ..   
T Consensus       199 ~~~~~-------------------------------~~~~~~~~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~~~~~~  244 (719)
T 1z68_A          199 SYYGD-------------------------------EQYPRTINIPYPKAGAK---NPVVRIFIIDTTYPAYVGPQEVPV  244 (719)
T ss_dssp             EECCS-------------------------------SSSCEEEEEECCBTTSC---CCEEEEEEEESSCHHHHCCEECCC
T ss_pred             eccCC-------------------------------CCCccceeecCCCCCCC---CCeeEEEEEECCCCCccceeEccC
Confidence            32100                               12233445556555431   11247999999988753  12   


Q ss_pred             ---ECCCCCCeEEEEEcCCCCCEEEEEeCC----CeEEEEE----cCCcceeeec----ccccCCeE-----EEEEeCCC
Q 001352          840 ---IMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYN----ARSSEVISKL----EGHSKRVT-----GLVFSDAL  899 (1093)
Q Consensus       840 ---~~~~~~~i~~l~~s~~d~~~lasg~~d----g~i~iwd----~~~~~~~~~l----~~h~~~V~-----~l~~s~dg  899 (1093)
                         +..|...+..++||| |++++++....    ..|.+||    +.++++...+    .+|.+.+.     .++|||||
T Consensus       245 ~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  323 (719)
T 1z68_A          245 PAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA  323 (719)
T ss_dssp             CHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence               235777899999999 78887775433    2588999    8888877666    46777777     89999999


Q ss_pred             CEEEE--EeCCC--cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeC-----CeEEEEEcCC--
Q 001352          900 NILVS--SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAEE--  967 (1093)
Q Consensus       900 ~~l~s--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d-----~~i~vwd~~~--  967 (1093)
                      +.|+.  ...+|  .|.+|++.+++..     ....+.    ..+..+.++ +++.|+. +.+     +..++|.+..  
T Consensus       324 ~~l~~~~~~~~g~~~l~~~~~~~~~~~-----~lt~~~----~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~  393 (719)
T 1z68_A          324 ISYYKIFSDKDGYKHIHYIKDTVENAI-----QITSGK----WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGS  393 (719)
T ss_dssp             SCEEEEEECTTSCEEEEEESSCSTTCE-----ECSCSS----SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSS
T ss_pred             CeEEEEEEccCCceEEEEEECCCCceE-----ecccCc----eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCC
Confidence            96654  44555  5777777765421     111121    146777888 8888877 443     6788887753  


Q ss_pred             cce-eeeee---cCCCCCEEEEEEccCCCEEEE-EeCC--CcEEEEEcCCCceEEEec
Q 001352          968 LTC-LKQWF---PISSVPISQATFSCDCRMVFT-SFVD--GTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       968 ~~~-~~~~~---~~h~~~v~~~~fs~dg~~l~t-~~~d--g~v~vwd~~~~~~~~~~~ 1018 (1093)
                      +.. ...+.   .+|...+..+.|||||++++. ++.+  ..+.+||+.+++....+.
T Consensus       394 g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~  451 (719)
T 1z68_A          394 YPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE  451 (719)
T ss_dssp             SSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred             CCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence            421 22221   225677889999999988774 4333  468899999887665544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=4.1e-20  Score=221.45  Aligned_cols=281  Identities=12%  Similarity=0.069  Sum_probs=201.3

Q ss_pred             HHHHhhcc-CCCCceeeeecCCCceEEEEEcc-CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCC-CCeEE
Q 001352          326 TVAQTLIE-GSSSPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNR  402 (1093)
Q Consensus       326 ~~~~~l~~-h~~~V~~~~~spdg~~llasg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~  402 (1093)
                      ++++.++. +..+|++++|||||++ ||+++. ||++.||++.+++...                    +..|. ..|.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~   69 (582)
T 3o4h_A           11 RIVRDVERLIAVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLD   69 (582)
T ss_dssp             HHHHHHHHHHHSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECE
T ss_pred             HHHHHHHHHhccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eeccccccccc
Confidence            44444442 2558999999999996 566555 9999999997766543                    44455 68999


Q ss_pred             EEECCCCCEEEEEEc---CCEEEEEEccC--CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352          403 VVWSPDGSLLGVAYS---KHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  477 (1093)
Q Consensus       403 v~~s~dg~~las~~~---d~~i~iwd~~~--~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  477 (1093)
                      ++|||| +.+++++.   +....+|.+..  .....   .+..+. .+...+|+|||+.+++++++.++ +.+||+.+++
T Consensus        70 ~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~  143 (582)
T 3o4h_A           70 PHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGG  143 (582)
T ss_dssp             ECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTE
T ss_pred             ccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCc
Confidence            999999 77777765   44566666544  22112   222222 34467899999875666666555 4599999987


Q ss_pred             eeEEeecCCCCeEEeeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001352          478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  553 (1093)
Q Consensus       478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~  553 (1093)
                      .......+.   .+++|+  +||++|++++.+    +.|++||+.+++.. .+..+...+..++|||||+.|+++..  +
T Consensus       144 ~~~l~~~~~---~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~  215 (582)
T 3o4h_A          144 LRELARLPG---FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--A  215 (582)
T ss_dssp             EEEEEEESS---CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--S
T ss_pred             EEEeecCCC---ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--C
Confidence            765554333   566664  577899988877    78999999877655 55667778899999999999995443  3


Q ss_pred             CceeEEEEeCCCCeeeeeeecccccCCCeEEEE--------EcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCC
Q 001352          554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH--------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE  625 (1093)
Q Consensus       554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  625 (1093)
                      +...|++||+.+++.. .+.++.   ..+..+.        |+|||..+++++.+|++++|++  ++.....     ...
T Consensus       216 ~~~~i~~~d~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----~~~  284 (582)
T 3o4h_A          216 REARLVTVDPRDGSVE-DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----QGN  284 (582)
T ss_dssp             SCEEEEEECTTTCCEE-ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----SSE
T ss_pred             CeeEEEEEcCCCCcEE-EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----CCc
Confidence            3458999999998877 666554   4555556        9999988888999999999999  6554411     134


Q ss_pred             CceEEEecCCCEEEEEECCCe---EEEEEcC
Q 001352          626 NPRICFNKNGTLLAVIANENR---IKILETP  653 (1093)
Q Consensus       626 v~~v~~s~~~~~l~~~~~dg~---i~iw~~~  653 (1093)
                      +.+++|+ +++++++++.+..   +.+|+..
T Consensus       285 v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          285 HGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             eEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence            7789999 9999988877644   5556554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=1.2e-18  Score=193.87  Aligned_cols=252  Identities=12%  Similarity=0.138  Sum_probs=170.2

Q ss_pred             CCCCeeEEEEccCCCEEEEEe---CCeEEEEEccCce--eEEEECCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcC
Q 001352          802 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR  875 (1093)
Q Consensus       802 ~~~~v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~i~iwd~~  875 (1093)
                      +...+..++|+|||+++++..   ++.|.+|++.+++  .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus        38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence            345667899999999444443   3789999998776  4444455677889999999 888888877 67999999996


Q ss_pred             C-cc--eeeeccc---------ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC-CCceeeeeeeecCCCcccCCCCceE
Q 001352          876 S-SE--VISKLEG---------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH  942 (1093)
Q Consensus       876 ~-~~--~~~~l~~---------h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~  942 (1093)
                      . +.  .+..+..         +...+.+++|+|||+++++...++.|.+|++. +++...........+     ..+..
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~  191 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH  191 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence            3 32  2333321         12348899999999977777778899999998 444332222222222     24678


Q ss_pred             EEEccCCCEEEEE--eCCeEEEEEcCC--cceeee-eecCCC------CCEEEEEEccCCCEE-EEEeCCCcEEEEEcCC
Q 001352          943 IQFHKDQTRFLLV--HETHLAIYEAEE--LTCLKQ-WFPISS------VPISQATFSCDCRMV-FTSFVDGTLSIHEASN 1010 (1093)
Q Consensus       943 ~~~s~dg~~l~~~--~d~~i~vwd~~~--~~~~~~-~~~~h~------~~v~~~~fs~dg~~l-~t~~~dg~v~vwd~~~ 1010 (1093)
                      ++|+|||++++++  .++.+.+|++..  ++.... ......      ..+..++|+|||++| ++...++.|.+|++..
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            9999999987774  467899999874  443211 111111      458899999999987 4556689999999973


Q ss_pred             CceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCC-CcEEEEecCCCCCC
Q 001352         1011 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDT 1067 (1093)
Q Consensus      1011 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d-g~v~~w~~~~~~~~ 1067 (1093)
                      ......+.   ..+..  .  -.+..++|+| |+++|++++.+ +.|.+|++.....+
T Consensus       272 ~g~~~~~~---~~~~~--~--~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          272 DGHLTLIQ---QISTE--G--DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK  321 (347)
T ss_dssp             GGCEEEEE---EEECS--S--SCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             CCcEEEeE---EEecC--C--CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence            32222221   11110  1  2345789999 58888777765 89999988654444

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=8.8e-20  Score=224.88  Aligned_cols=279  Identities=14%  Similarity=0.078  Sum_probs=198.1

Q ss_pred             eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCC---CeEEEEECCCCCEEEEE
Q 001352          339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLGVA  415 (1093)
Q Consensus       339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~s~dg~~las~  415 (1093)
                      ..++|+|||+ +++++ .|++|++||+.+++....                   +.+|..   .|.+++|||||++||++
T Consensus        19 ~~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~   77 (719)
T 1z68_A           19 FFPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLE   77 (719)
T ss_dssp             CCCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred             CccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEE
Confidence            4889999996 46654 589999999999987643                   223332   48999999999999998


Q ss_pred             Ec---------CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe-ecC
Q 001352          416 YS---------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH  485 (1093)
Q Consensus       416 ~~---------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~h  485 (1093)
                      +.         ++.|++||+.+++.+... .+   ...+.+++|||||+  .|+.+. ++.|++||+.+++..+.. .++
T Consensus        78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~  150 (719)
T 1z68_A           78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGR  150 (719)
T ss_dssp             EEEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred             ecCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence            76         689999999998652101 12   24688999999999  566665 789999999988775432 233


Q ss_pred             CCCe-----------------EEeeecccCCccEEEEEecCC----------------------------------eEEE
Q 001352          486 GAPV-----------------YSLCPHAKENIHFIFSISVDG----------------------------------KIKA  514 (1093)
Q Consensus       486 ~~~v-----------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~v  514 (1093)
                      ...|                 .+++|  ++||++|++++.|.                                  .|++
T Consensus       151 ~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~  228 (719)
T 1z68_A          151 ENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI  228 (719)
T ss_dssp             TTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             cCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence            3222                 36777  55788999887652                                  7889


Q ss_pred             EEcCCCCce--EE------ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe----CCCCeeeeee----eccccc
Q 001352          515 WLYDSLGAR--VD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN----ESEGAIKRTY----QGLQLQ  578 (1093)
Q Consensus       515 wd~~~~~~~--~~------~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~  578 (1093)
                      ||+.++...  ..      +..+...+..++|+||++.+++..........|.+||    ..+++....+    .++.  
T Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~--  306 (719)
T 1z68_A          229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT--  306 (719)
T ss_dssp             EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS--
T ss_pred             EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC--
Confidence            999876642  12      2245667899999999887776544334456799999    8888877666    3444  


Q ss_pred             CCCeE-----EEEEcCCCCEEEE--EeCCC--cEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC-----
Q 001352          579 HNSVS-----VVHFDTAKDQILA--AGDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----  644 (1093)
Q Consensus       579 ~~~v~-----~v~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----  644 (1093)
                       ..+.     .+.|+|+|+.++.  ...+|  .|++||+.+++. ..+..+  ...+..+.++ +++.++..+.+     
T Consensus       307 -~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~  381 (719)
T 1z68_A          307 -GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYP  381 (719)
T ss_dssp             -SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred             -ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccC--ceEEEEEEEE-eCCEEEEEEecCCCCC
Confidence             4454     7899999996655  33455  577778877763 344322  2336677777 88888777765     


Q ss_pred             CeEEEEEcCC
Q 001352          645 NRIKILETPE  654 (1093)
Q Consensus       645 g~i~iw~~~~  654 (1093)
                      +..++|.+..
T Consensus       382 ~~~~l~~~~~  391 (719)
T 1z68_A          382 GRRNIYRISI  391 (719)
T ss_dssp             TCBEEEEEEC
T ss_pred             ceEEEEEEeC
Confidence            7888888754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=5.5e-19  Score=191.61  Aligned_cols=252  Identities=10%  Similarity=0.020  Sum_probs=189.0

Q ss_pred             CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEecCCCCCCCceEEEe
Q 001352          554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s  632 (1093)
                      .++.|++||+.+++.... ..+.   ..+.+++|+|+++++++++ ++.|++||+.+ ++.......+. ...+.+++|+
T Consensus        20 ~~~~i~~~d~~~~~~~~~-~~~~---~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s   93 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMRVV-WQTP---ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA-TICNNDHGIS   93 (297)
T ss_dssp             CCEEEEEEETTTTEEEEE-EEES---SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC-CCBCSCCEEC
T ss_pred             cceeEEEEeCCCCceeee-ccCC---cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc-cccccceEEC
Confidence            378899999999887644 4444   7899999999999999887 78999999999 87765554332 2457889999


Q ss_pred             cCCCEEEEEEC--CCeEEEEEc--CCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352          633 KNGTLLAVIAN--ENRIKILET--PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  708 (1093)
Q Consensus       633 ~~~~~l~~~~~--dg~i~iw~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  708 (1093)
                      |+++++++++.  ++...||.+  .++.. ..+.                                              
T Consensus        94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~----------------------------------------------  126 (297)
T 2ojh_A           94 PDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMT----------------------------------------------  126 (297)
T ss_dssp             TTSSEEEEEECTTTSSCEEEEEETTCCCC-EECC----------------------------------------------
T ss_pred             CCCCEEEEEEeCCCCcceEEEEECCCCce-EEee----------------------------------------------
Confidence            99999999983  345555544  32211 0000                                              


Q ss_pred             ccceecceeeccCccccccccCccccccceEEEEeecCCceEE-EeeccceeEEeeecCcccCcCcccccccCCcccCCC
Q 001352          709 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR  787 (1093)
Q Consensus       709 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1093)
                                               ....+..++|+|+++.++ ++..++.+.+|++...                    
T Consensus       127 -------------------------~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~--------------------  161 (297)
T 2ojh_A          127 -------------------------KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID--------------------  161 (297)
T ss_dssp             -------------------------SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT--------------------
T ss_pred             -------------------------cCCCccceEECCCCCEEEEEECCCCceEEEEEECC--------------------
Confidence                                     112366789999999887 5667899999986532                    


Q ss_pred             CCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEcc-CceeEEEECCCCCCeEEEEEcCCCCCEEEEEe
Q 001352          788 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVM-TFKTILTIMPPSPTATSLAFNPHDNNVIAIGM  864 (1093)
Q Consensus       788 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~  864 (1093)
                      ++. ...  +.  .+...+.+++|+|+|+++++++  ++.+++|++. .+.....+..+...+.+++|+| ++++|++++
T Consensus       162 ~~~-~~~--~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~  235 (297)
T 2ojh_A          162 SGV-ETR--LT--HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVS  235 (297)
T ss_dssp             TCC-EEE--CC--CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEE
T ss_pred             CCc-ceE--cc--cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEE
Confidence            111 111  11  2567889999999999888765  6889999886 5666777888888899999999 899988887


Q ss_pred             CC-----------CeEEEEEcCCcce--eeecccccCCeEEEEEeCCCCEEEEEeCCC
Q 001352          865 DD-----------STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA  909 (1093)
Q Consensus       865 ~d-----------g~i~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg  909 (1093)
                      .+           +.|++||+.+++.  +..+.+|...+.+++|+||+++|++++.+.
T Consensus       236 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          236 YDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             cCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            66           5799999998865  344557888999999999999999887664

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.84  E-value=1.5e-18  Score=213.57  Aligned_cols=280  Identities=14%  Similarity=0.119  Sum_probs=186.6

Q ss_pred             CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCC-----CeEEEEECCCC
Q 001352          335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDG  409 (1093)
Q Consensus       335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~s~dg  409 (1093)
                      ......++|+|||+ +++++  |++|++||+.+|+....                   +.+|..     ....++|||||
T Consensus        16 ~~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg   73 (740)
T 4a5s_A           16 RLKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDG   73 (740)
T ss_dssp             CCCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTS
T ss_pred             cccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCC
Confidence            34577999999998 57776  89999999999986543                   344443     23458999999


Q ss_pred             CEEEEEEcC---------CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE
Q 001352          410 SLLGVAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  480 (1093)
Q Consensus       410 ~~las~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  480 (1093)
                      ++|++++.+         +.+.+||+.+++...    +..|...+..++|||||+  .|+.+. |+.|++||+.+++..+
T Consensus        74 ~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~  146 (740)
T 4a5s_A           74 QFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYR  146 (740)
T ss_dssp             SEEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEE
T ss_pred             CEEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEE
Confidence            999999876         556799999986433    557788899999999999  466654 7899999999887554


Q ss_pred             E-eecCCCCe-----------------EEeeecccCCccEEEEEecCCe-EEEEEcCCCCceEEecCCCCceEEEEEccC
Q 001352          481 S-FEGHGAPV-----------------YSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSAN  541 (1093)
Q Consensus       481 ~-~~~h~~~v-----------------~~~~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d  541 (1093)
                      . ..++...+                 ..+.|  ++||+.|+.++.|.+ +.+|++.......   .+...+..+.+.+.
T Consensus       147 lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~  221 (740)
T 4a5s_A          147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKA  221 (740)
T ss_dssp             CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBT
T ss_pred             EcCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCC
Confidence            2 22333222                 23556  568888988876655 8888763221100   12335566777776


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCC---Ce--eeeeeeccc---ccCCCeEEEEEcCCCCEEEEEe----CCCcEEEEECC
Q 001352          542 GRRLFSCGTSKEGESFLVEWNESE---GA--IKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMN  609 (1093)
Q Consensus       542 ~~~l~~~~~~~~~~~~i~iwd~~~---~~--~~~~~~~~~---~~~~~v~~v~~~~~~~~l~~~~----~dg~i~iwd~~  609 (1093)
                      |..        .....|++||+.+   ++  ....+....   .+...+..++|+|||+.++...    .+..|++||+.
T Consensus       222 G~~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~  293 (740)
T 4a5s_A          222 GAV--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD  293 (740)
T ss_dssp             TSC--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred             cCc--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC
Confidence            643        1244699999998   73  122232200   1236789999999998766643    23479999999


Q ss_pred             CCc----eE--EEE--ecCCCCCC---CceEEEecCCCEEE-EEEC-C--CeEEEEEcCCCc
Q 001352          610 KVQ----LL--TTI--DAGGGLPE---NPRICFNKNGTLLA-VIAN-E--NRIKILETPESN  656 (1093)
Q Consensus       610 ~~~----~~--~~~--~~~~~~~~---v~~v~~s~~~~~l~-~~~~-d--g~i~iw~~~~~~  656 (1093)
                      +++    +.  ..+  ..+.....   ...++|+|||+.++ ..+. +  ..|++|+..++.
T Consensus       294 tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          294 ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence            887    21  111  22221111   23789999999887 6654 3  457777776543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=2.7e-17  Score=184.04  Aligned_cols=312  Identities=10%  Similarity=0.085  Sum_probs=196.0

Q ss_pred             cCCCEEEEEecCCCCceeEEEEeC--CCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCC--C
Q 001352          540 ANGRRLFSCGTSKEGESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNK--V  611 (1093)
Q Consensus       540 ~d~~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d----g~i~iwd~~~--~  611 (1093)
                      +...++++++.....++.|++|.+  .+++.......+   ...+..++|+|++++|++++.+    +.|.+|++..  +
T Consensus        11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~---~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g   87 (361)
T 3scy_A           11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE---VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG   87 (361)
T ss_dssp             GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE---CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred             CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc---CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence            444566666554444556777755  566554433332   3667889999999999998875    7999998865  4


Q ss_pred             ceEEEEecCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceE
Q 001352          612 QLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS  690 (1093)
Q Consensus       612 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  690 (1093)
                      +................+++  ++++++++. .++.+.+|++.....+.....                           
T Consensus        88 ~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~---------------------------  138 (361)
T 3scy_A           88 TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD---------------------------  138 (361)
T ss_dssp             EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE---------------------------
T ss_pred             cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce---------------------------
Confidence            43322221111123455666  788777776 578899999864322111100                           


Q ss_pred             ecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccC
Q 001352          691 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT  770 (1093)
Q Consensus       691 ~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~  770 (1093)
                                                                       .+.....+.                      
T Consensus       139 -------------------------------------------------~~~~~g~~~----------------------  147 (361)
T 3scy_A          139 -------------------------------------------------VIEFKGSGP----------------------  147 (361)
T ss_dssp             -------------------------------------------------EEECCCCCS----------------------
T ss_pred             -------------------------------------------------eEEccCCCC----------------------
Confidence                                                             000000000                      


Q ss_pred             cCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEccCce-------e-----
Q 001352          771 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK-------T-----  836 (1093)
Q Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~-------~-----  836 (1093)
                                                .+...+...+.+++|+|||+++++++  ++.|.+|++....       .     
T Consensus       148 --------------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          148 --------------------------DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             --------------------------CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             --------------------------CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence                                      00001334467788899988776665  5788999876433       1     


Q ss_pred             -EEEECCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCCcce--eee---cccccCCeEEEEEeCCCCEEEEEeCC-
Q 001352          837 -ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV--ISK---LEGHSKRVTGLVFSDALNILVSSGGD-  908 (1093)
Q Consensus       837 -~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~i~iwd~~~~~~--~~~---l~~h~~~V~~l~~s~dg~~l~s~s~d-  908 (1093)
                       ......+......++|+| |+++|++++ .++.|.+|++.+++.  +..   ...+...+..++|+|||++|+++..+ 
T Consensus       202 ~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~  280 (361)
T 3scy_A          202 PEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK  280 (361)
T ss_dssp             EEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred             ccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence             122233456688999999 888887777 689999999987754  222   23344567899999999998766654 


Q ss_pred             -CcEEEEeCC--CCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE--eCCeEEEEE--cCCcceeeeeecCCCCC
Q 001352          909 -AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYE--AEELTCLKQWFPISSVP  981 (1093)
Q Consensus       909 -g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd--~~~~~~~~~~~~~h~~~  981 (1093)
                       +.|.+|+++  +++......+..  +     ..+..++|+|||++|+++  .++.|.+|+  ..+|+........+...
T Consensus       281 ~~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~  353 (361)
T 3scy_A          281 ADGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDK  353 (361)
T ss_dssp             SCEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSS
T ss_pred             CCEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCC
Confidence             889999996  344222222222  1     247799999999999885  467899965  45676554322234567


Q ss_pred             EEEEEEc
Q 001352          982 ISQATFS  988 (1093)
Q Consensus       982 v~~~~fs  988 (1093)
                      +.++.|.
T Consensus       354 p~~v~~~  360 (361)
T 3scy_A          354 PVCLKFV  360 (361)
T ss_dssp             EEEEEEE
T ss_pred             CeEEEEc
Confidence            8888886

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=1.4e-17  Score=186.23  Aligned_cols=302  Identities=13%  Similarity=0.115  Sum_probs=198.2

Q ss_pred             eeecCCCceEEEEEcc----CCcEEEEec--CCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEE
Q 001352          341 MDFHPVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  414 (1093)
Q Consensus       341 ~~~spdg~~llasg~~----dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las  414 (1093)
                      .+..+... .+.+|+.    ++.|.+|++  .+|+.....                  .. +...+..++|+|||++|++
T Consensus         7 ~~~~~~~~-~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~   66 (361)
T 3scy_A            7 PSTTDSEL-TMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYS   66 (361)
T ss_dssp             CCGGGGEE-EEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEE
T ss_pred             hhhCCCce-EEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEE
Confidence            33444444 4666643    567888876  456544321                  11 5677888999999999999


Q ss_pred             EEcC----CEEEEEEccCC-CcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe------e
Q 001352          415 AYSK----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF------E  483 (1093)
Q Consensus       415 ~~~d----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~------~  483 (1093)
                      ++.+    +.|.+|++... ..+........+......+++  +++. ++++...++.|.+|++.+...+..+      .
T Consensus        67 ~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~  143 (361)
T 3scy_A           67 VNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFK  143 (361)
T ss_dssp             EECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECC
T ss_pred             EEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEcc
Confidence            9875    79999998763 223333344445667778888  7773 3444557889999999765433211      1


Q ss_pred             c--------CCCCeEEeeecccCCccEEEEEe-cCCeEEEEEcCCCCc------e-------EEecCCCCceEEEEEccC
Q 001352          484 G--------HGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA------R-------VDYDAPGLGCTRMAYSAN  541 (1093)
Q Consensus       484 ~--------h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~------~-------~~~~~~~~~v~~~~~s~d  541 (1093)
                      +        +...+.+++|+  ++++++++++ .++.|++|+++....      .       ............++|+||
T Consensus       144 g~~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd  221 (361)
T 3scy_A          144 GSGPDKERQTMPHLHCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD  221 (361)
T ss_dssp             CCCSCTTTCSSCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT
T ss_pred             CCCCCccccCCCcceEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC
Confidence            1        12234678885  4667665554 589999999886542      1       222334456789999999


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCCCee--eeeeecccccCCCeEEEEEcCCCCEEEEEeC--CCcEEEEECC--CCc--e
Q 001352          542 GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMN--KVQ--L  613 (1093)
Q Consensus       542 ~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~--dg~i~iwd~~--~~~--~  613 (1093)
                      |++++++..   .++.|.+|++.+++.  +..+.....+......++|+|+|++++++..  ++.|.+|++.  +++  .
T Consensus       222 g~~l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~  298 (361)
T 3scy_A          222 GKFAYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTK  298 (361)
T ss_dssp             SSEEEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEE
T ss_pred             CCEEEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEE
Confidence            998887763   256799999987755  2333332222245689999999999977665  4899999985  455  3


Q ss_pred             EEEEecCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcC--CCceeeec-ccccccceeeee
Q 001352          614 LTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETP--ESNSVDAA-GVLSDNLRKLSV  673 (1093)
Q Consensus       614 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~--~~~~~~~~-~~~~~~i~~~~~  673 (1093)
                      +..+..   ...+..++|+|+|++|++++ .++.+.+|++.  +++..... ..+...+.|+.|
T Consensus       299 ~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~  359 (361)
T 3scy_A          299 VGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF  359 (361)
T ss_dssp             EEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred             eeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence            344443   13478999999999998888 57999997654  55444332 223334555554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.83  E-value=4.4e-19  Score=200.96  Aligned_cols=299  Identities=11%  Similarity=0.027  Sum_probs=195.9

Q ss_pred             HhhccCCCCcee-----eeecCCCceEEEEEccCC--cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE
Q 001352          329 QTLIEGSSSPMS-----MDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  401 (1093)
Q Consensus       329 ~~l~~h~~~V~~-----~~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  401 (1093)
                      ..|..|...+..     .+|||||++|++++..+|  .|.+||+.+++....                   ..+|...+.
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t~~~~~~~~   84 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------------------TEGRGDNTF   84 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-------------------CCSSCBCSS
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-------------------eeCCCCCcc
Confidence            445556655555     899999997555544467  488889998876542                   344555565


Q ss_pred             EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEE--eeCCCCcEEEEE------------------
Q 001352          402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVIT------------------  461 (1093)
Q Consensus       402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~d~~~l~l~s------------------  461 (1093)
                      .++|||||++|++++.++.|++||+.+++...   ....+...+....  +++|++  +++.                  
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~  159 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFH  159 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHH
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchhh
Confidence            78899999999999999999999999986433   2334555454443  489998  4543                  


Q ss_pred             ----EcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCC-
Q 001352          462 ----CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPG-  530 (1093)
Q Consensus       462 ----~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~-  530 (1093)
                          .+.+..|.+||+.+++.. .+..+...+..++|+|. |+..|+....+      ..|.++|.............. 
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~  237 (388)
T 3pe7_A          160 EFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEG  237 (388)
T ss_dssp             HHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTT
T ss_pred             hhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCC
Confidence                224568999999998754 44456677888888541 66777776653      367777776554433222222 


Q ss_pred             CceEEEEEccCCCEEEEEecCC-CCceeEEEEeCCCCeeeee--eecccccCCCeEEEEEcCCCCEEEEE---------e
Q 001352          531 LGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAA---------G  598 (1093)
Q Consensus       531 ~~v~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~v~~~~~~~~l~~~---------~  598 (1093)
                      ..+..++|+|||+.|+..+... .....|++||+.+++....  +.++...........|+|+|+.++..         .
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  317 (388)
T 3pe7_A          238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE  317 (388)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------C
T ss_pred             cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence            2577889999999887665432 2234599999999875332  22210000001123689999988764         4


Q ss_pred             CCCcEEEEECCCCceEEEEecCCCCC--------CCceEEEecCCCEEEEEEC-CCeEEEEEcC
Q 001352          599 DDHVIKIWDMNKVQLLTTIDAGGGLP--------ENPRICFNKNGTLLAVIAN-ENRIKILETP  653 (1093)
Q Consensus       599 ~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~  653 (1093)
                      .+..|++||+.+++............        .+..++|+|||+.|+..+. +|...+|.+.
T Consensus       318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          318 NDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             CCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence            56789999999887644433222100        3678899999998887764 6666666544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=6e-18  Score=208.16  Aligned_cols=381  Identities=12%  Similarity=0.030  Sum_probs=243.4

Q ss_pred             ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCe--EEEEEcCCCCEEEEEeCC---------
Q 001352          532 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGDD---------  600 (1093)
Q Consensus       532 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v--~~v~~~~~~~~l~~~~~d---------  600 (1093)
                      ...++.|+|||++++++      ++.|++||+.+++....+.++......+  ..+.|||||++|+.++.+         
T Consensus        18 ~~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             cccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence            34578999999988875      4469999999999888887776222223  448899999999998875         


Q ss_pred             CcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecc-cccccceeeeecCCCce
Q 001352          601 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTV  679 (1093)
Q Consensus       601 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~  679 (1093)
                      +.+.+||+.+++... +..  +...+..++|||||+.||.+. ++.|++|+..++...+... ++...            
T Consensus        92 ~~~~~~d~~~~~~~~-l~~--~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~------------  155 (740)
T 4a5s_A           92 ASYDIYDLNKRQLIT-EER--IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI------------  155 (740)
T ss_dssp             EEEEEEETTTTEECC-SSC--CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT------------
T ss_pred             eEEEEEECCCCcEEE-ccc--CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc------------
Confidence            567799999988653 222  234578999999999999885 5899999998765432211 10000            


Q ss_pred             eeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecc-ce
Q 001352          680 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GV  758 (1093)
Q Consensus       680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~  758 (1093)
                                            +..+..   -.+|.-+                -.+....+.|||||+.|+....| +.
T Consensus       156 ----------------------~~~g~~---~~v~~ee----------------~~~~~~~~~wSpDg~~la~~~~d~~~  194 (740)
T 4a5s_A          156 ----------------------IYNGIT---DWVYEEE----------------VFSAYSALWWSPNGTFLAYAQFNDTE  194 (740)
T ss_dssp             ----------------------EEESBC---CHHHHHH----------------TSSSSBCEEECTTSSEEEEEEEECTT
T ss_pred             ----------------------eecCcc---cccccch----------------hcCCCcceEECCCCCEEEEEEEcccC
Confidence                                  000000   0000000                01223457899999999988766 44


Q ss_pred             eEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccC---ce
Q 001352          759 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT---FK  835 (1093)
Q Consensus       759 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~---~~  835 (1093)
                      +.+|++.....                 ..            .+...+..+.+.+.|..-   ...+|.+||+.+   ++
T Consensus       195 v~~~~~~~~~~-----------------~~------------~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~~~~~  242 (740)
T 4a5s_A          195 VPLIEYSFYSD-----------------ES------------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVT  242 (740)
T ss_dssp             CCEEEEEECCS-----------------TT------------CSSCEEEEEECCBTTSCC---CEEEEEEEETTSCCSSS
T ss_pred             CceEEEEeecC-----------------CC------------CCCCcceeecCCCCcCcC---CeeEEEEEECCCCCCCC
Confidence            88877643210                 00            133455667777776431   123689999998   73


Q ss_pred             --eEEEECC------CCCCeEEEEEcCCCCCEEEEEeC----CCeEEEEEcCCcc----ee--eec--ccccCCeE----
Q 001352          836 --TILTIMP------PSPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSE----VI--SKL--EGHSKRVT----  891 (1093)
Q Consensus       836 --~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~----dg~i~iwd~~~~~----~~--~~l--~~h~~~V~----  891 (1093)
                        ....+..      +...+..++|+| |+++++....    +..|++||+.+++    +.  ..+  .+|...|.    
T Consensus       243 ~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~  321 (740)
T 4a5s_A          243 NATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP  321 (740)
T ss_dssp             CCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred             cceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence              2334442      677899999999 8887665543    3379999999987    33  222  45665554    


Q ss_pred             -EEEEeCCCCEEE-EEeC-C--CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeC-----C--
Q 001352          892 -GLVFSDALNILV-SSGG-D--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----T--  958 (1093)
Q Consensus       892 -~l~~s~dg~~l~-s~s~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d-----~--  958 (1093)
                       .++|||||+.|+ ..+. +  ..|.+||+.+++.     .+...+..    .+..+. ++|++.|+. +..     +  
T Consensus       322 ~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~~----~v~~~~-~~d~~~i~f~~~~~~~~~~~~  391 (740)
T 4a5s_A          322 SEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGTW----EVIGIE-ALTSDYLYYISNEYKGMPGGR  391 (740)
T ss_dssp             CCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSSS----CEEEEE-EECSSEEEEEESCGGGCTTCB
T ss_pred             CCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCCE----EEEEEE-EEeCCEEEEEEecCCCCCcee
Confidence             789999999887 6654 3  4688889887552     22333322    244443 355777766 432     2  


Q ss_pred             eEEEEEcCCcceeeeeec---CCCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceEEEec
Q 001352          959 HLAIYEAEELTCLKQWFP---ISSVPISQATFSCDCRMVFTSFVD---GTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       959 ~i~vwd~~~~~~~~~~~~---~h~~~v~~~~fs~dg~~l~t~~~d---g~v~vwd~~~~~~~~~~~ 1018 (1093)
                      .|+..++..+.....+..   +....+..+.|||||++++.....   ..+.+++..+++....+.
T Consensus       392 ~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~  457 (740)
T 4a5s_A          392 NLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE  457 (740)
T ss_dssp             EEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence            455555555443222221   234678899999999987755433   368888988887655443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=1.1e-17  Score=185.91  Aligned_cols=247  Identities=11%  Similarity=0.141  Sum_probs=170.7

Q ss_pred             CCCCeEEEEECCCCCEEEEEEc---CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEc-CCCcEEEE
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVW  471 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d~~i~vw  471 (1093)
                      +...+..++|+|||+ |++++.   ++.|.+||+.+++. +....+..+...+..++|+|||+  +|++++ .++.|.+|
T Consensus        38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v~  113 (347)
T 3hfq_A           38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEVM  113 (347)
T ss_dssp             ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEEE
T ss_pred             ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEEE
Confidence            456788899999999 555544   58999999987652 33334456778899999999999  566555 78999999


Q ss_pred             ECCC-Cc--eeEEeec---------CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecC-CCCceEE
Q 001352          472 DAVT-GS--RTYSFEG---------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDA-PGLGCTR  535 (1093)
Q Consensus       472 d~~~-~~--~~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~-~~~~v~~  535 (1093)
                      ++.. |.  .+..+..         +...+.+++|++  +++++++...++.|++|++.......   .... .......
T Consensus       114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~  191 (347)
T 3hfq_A          114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH  191 (347)
T ss_dssp             EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred             EeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence            9963 33  2333322         112477888855  55677777778999999998433222   1222 3346788


Q ss_pred             EEEccCCCEEEEEecCCCCceeEEEEeCCC--Ceee--eeeecccc---cCCCeEEEEEcCCCCEEEE-EeCCCcEEEEE
Q 001352          536 MAYSANGRRLFSCGTSKEGESFLVEWNESE--GAIK--RTYQGLQL---QHNSVSVVHFDTAKDQILA-AGDDHVIKIWD  607 (1093)
Q Consensus       536 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~~~--~~~~~~~~---~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd  607 (1093)
                      ++|+|||++++++..   .++.|.+|++..  ++..  ..+.....   ....+..++|+|+|+++++ ...++.|.+|+
T Consensus       192 ~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~  268 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGE---LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA  268 (347)
T ss_dssp             EEECTTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred             EEECCCCCEEEEEeC---CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence            999999998877653   255688898764  5432  22222210   0134888999999998855 56789999999


Q ss_pred             CCC-C--ceEEEEecCCCCCCCceEEEecCCCEEEEEECC-CeEEEEEcC
Q 001352          608 MNK-V--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKILETP  653 (1093)
Q Consensus       608 ~~~-~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~~  653 (1093)
                      +.. +  +.+..+..++  ..+..++|+|+|++|++++.+ +.+.+|++.
T Consensus       269 ~~~~g~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          269 VTADGHLTLIQQISTEG--DFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             ECGGGCEEEEEEEECSS--SCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCcEEEeEEEecCC--CCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            973 2  4444554432  346899999999998888764 899999554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.82  E-value=3e-19  Score=203.37  Aligned_cols=272  Identities=13%  Similarity=0.102  Sum_probs=187.7

Q ss_pred             CCCeeEEEEccCCCEEEEEeCCeEEEEEccCce----------eEEE-----ECCCCCCeEEEEEcCCCCCEEE----EE
Q 001352          803 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFK----------TILT-----IMPPSPTATSLAFNPHDNNVIA----IG  863 (1093)
Q Consensus       803 ~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~----------~~~~-----~~~~~~~i~~l~~s~~d~~~la----sg  863 (1093)
                      ...+..+++++++.++++++.+.+++|+.....          .+..     ...+...|.+++|+| ++++||    +|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEecc
Confidence            446788999999999999986559998864211          1111     112456799999999 899999    78


Q ss_pred             eCCCeEEEEEcCCc--------c---eeeecccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCceeeeeeeecCC
Q 001352          864 MDDSTILIYNARSS--------E---VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD  931 (1093)
Q Consensus       864 ~~dg~i~iwd~~~~--------~---~~~~l~~h~~~V~~l~~s~d-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  931 (1093)
                      +.|+.|+|||+.++        +   .+..+.+|...|.+++|+|+ +++|++++.||+|++||+.++..     .....
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-----~~~~~  189 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-----VCATL  189 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-----EEEEE
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-----eeecc
Confidence            88999999999765        1   14567789999999999998 89999999999999999998632     11122


Q ss_pred             CcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeec------CCCCCEEEEEEccCCCEEEEE-eCCCc-
Q 001352          932 GVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTS-FVDGT- 1002 (1093)
Q Consensus       932 ~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~------~h~~~v~~~~fs~dg~~l~t~-~~dg~- 1002 (1093)
                      +|..   .|.+++|+|+|++|++ +.|++|++||+. ++....+..      .|...|.+++|++++.++++. +.||. 
T Consensus       190 ~~~~---~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~  265 (434)
T 2oit_A          190 PSTV---AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL  265 (434)
T ss_dssp             CGGG---CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred             CCCC---ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence            2332   6999999999999999 578999999998 544443221      233489999999999887653 34433 


Q ss_pred             -----EEEEEcCCCce-----EEEeccccccCCCCCCCccceeEEEeCCCCCCEEEE-EeCCCcEEEEecCCCCCCcccC
Q 001352         1003 -----LSIHEASNLEV-----QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV-GLTNGEVYVIEPNEPGDTWAVL 1071 (1093)
Q Consensus      1003 -----v~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~-~~~dg~v~~w~~~~~~~~~~~~ 1071 (1093)
                           +++|++.....     ...+....+-...   .....+.+.+.++ .+++++ .+..+.|.+......+..|...
T Consensus       266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~l~d-w~l~~v~s~~s~dv~vl~~~~~~~~~~~~  341 (434)
T 2oit_A          266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCT---ERQHHYYLSYIEE-WDLVLAASAASTEVSILARQSDQINWESW  341 (434)
T ss_dssp             SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCS---SSCCCEEEEEEGG-GTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred             CCCCceEEEEeccCCCCCCcceEecccCCCCCCC---CcCcceeeehhcc-CCEEEEecCCCCceeEEEecCCCCccEEE
Confidence                 89999986532     1111111110001   1112223444453 455544 4455679999887776678777


Q ss_pred             CCccccCCCCCCCCccc
Q 001352         1072 PPDEIVGDQPTSTSEGD 1088 (1093)
Q Consensus      1072 ~~~~~~~~~~~~~~~~~ 1088 (1093)
                      ...|...+.-+...+++
T Consensus       342 ~~~d~~ra~lP~~~~~~  358 (434)
T 2oit_A          342 LLEDSSRAELPVTDKSD  358 (434)
T ss_dssp             EECGGGCCBCCBCTTSC
T ss_pred             eccccccccccCCCCCC
Confidence            77776666666555543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=4e-18  Score=189.89  Aligned_cols=284  Identities=11%  Similarity=0.043  Sum_probs=194.3

Q ss_pred             eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-Ec
Q 001352          339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YS  417 (1093)
Q Consensus       339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~-~~  417 (1093)
                      +.++++++++ ++++++.+++|.+||+.+++.+.....                  +....+..++|+|||++++++ ..
T Consensus         3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~s~dg~~~~v~~~~   63 (349)
T 1jmx_B            3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVM------------------PDKFGPGTAMMAPDNRTAYVLNNH   63 (349)
T ss_dssp             -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEEC------------------SSCCSSCEEEECTTSSEEEEEETT
T ss_pred             ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEec------------------CCCCCCceeEECCCCCEEEEEeCC
Confidence            3568888887 688889999999999999987754221                  122257889999999976554 56


Q ss_pred             CCEEEEEEccCCCcccceEEec-cc-----cccEEEEEeeCCCCcEEEEEEcCC------------CcEEEEECCCCcee
Q 001352          418 KHIVQLYAYHGGSDARQQLEID-AH-----VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSRT  479 (1093)
Q Consensus       418 d~~i~iwd~~~~~~~~~~~~~~-~h-----~~~v~~~~~s~d~~~l~l~s~~~d------------~~i~vwd~~~~~~~  479 (1093)
                      ++.|.+||+.+++...   .+. ++     ...+..++|+|||+  ++++++.+            +.|.+||+.+++..
T Consensus        64 ~~~i~~~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  138 (349)
T 1jmx_B           64 YGDIYGIDLDTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  138 (349)
T ss_dssp             TTEEEEEETTTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             CCcEEEEeCCCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence            8899999999886543   222 22     23478899999999  56666654            89999999985543


Q ss_pred             ---EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC------------------------c
Q 001352          480 ---YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL------------------------G  532 (1093)
Q Consensus       480 ---~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------------------------~  532 (1093)
                         ..+. +...+.+++|++  ++. +++++  +.|.+||+.+++....+.....                        .
T Consensus       139 ~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (349)
T 1jmx_B          139 KPVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM  212 (349)
T ss_dssp             CCSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred             ceeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence               3444 334577788854  556 55543  4499999988877665543320                        2


Q ss_pred             eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 001352          533 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV  611 (1093)
Q Consensus       533 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~i~iwd~~~~  611 (1093)
                      ...+++++++........   ....+..+|..+++.... .... ....+..++|+| ++++++++  ++.|.+||+.++
T Consensus       213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~  285 (349)
T 1jmx_B          213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQ-EFAD-LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR  285 (349)
T ss_dssp             EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEE-EEEE-CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT
T ss_pred             eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEec-cccc-CCCcceeeEecCCCCCEEEEE--cCeEEEEECccC
Confidence            344666655432211110   011233356665543211 1111 235688999999 99999888  889999999999


Q ss_pred             ceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecc
Q 001352          612 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  662 (1093)
Q Consensus       612 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  662 (1093)
                      +.+..+....   .+.+++|+|+|++|++++.++.|.+||..+.+.+..+.
T Consensus       286 ~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          286 KLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             EEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             eEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            9888877543   36799999999999988889999999999887766554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=1.2e-18  Score=208.60  Aligned_cols=236  Identities=16%  Similarity=0.168  Sum_probs=175.8

Q ss_pred             CCCeEEEEECCCCCEEEEEEc-CCEEEEEEccCCCcccceEEecccc-ccEEEEEeeCCCCcEEEEEEcC---CCcEEEE
Q 001352          397 GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---DKTIKVW  471 (1093)
Q Consensus       397 ~~~V~~v~~s~dg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~---d~~i~vw  471 (1093)
                      ..+|.+++|+|||++||+++. ||++.||++.+++..    .+..|. ..+..++|+|| +  ++++++.   +...++|
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF   93 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence            568999999999999999887 999999999776432    344555 68999999999 5  6776664   4556665


Q ss_pred             ECCC---CceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001352          472 DAVT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  548 (1093)
Q Consensus       472 d~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~  548 (1093)
                      .+..   +... .+..+. .+...+|++++++..+++++.++.. +||+.+++.......+.   .+++|||||++++++
T Consensus        94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~  167 (582)
T 3o4h_A           94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAGL  167 (582)
T ss_dssp             EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred             EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence            5433   3322 443222 3445677777666566666555554 99998876555443333   789999999999988


Q ss_pred             ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceEEEEecCCCCCCC
Q 001352          549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGLPEN  626 (1093)
Q Consensus       549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v  626 (1093)
                      +.+..+...|++||+.+++.. .+..+.   ..+..++|+|||+.|+++..++  .|++||+.+++.. .+..+  ...+
T Consensus       168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~  240 (582)
T 3o4h_A          168 GFFGGGRVSLFTSNLSSGGLR-VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDF  240 (582)
T ss_dssp             EEEETTEEEEEEEETTTCCCE-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHH
T ss_pred             EEcCCCCeEEEEEcCCCCCce-EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcCh
Confidence            765444477999999988765 555555   6789999999999999888888  8999999998877 44433  2335


Q ss_pred             ceEE--------EecCCCEEEEEECCCeEEEEEc
Q 001352          627 PRIC--------FNKNGTLLAVIANENRIKILET  652 (1093)
Q Consensus       627 ~~v~--------~s~~~~~l~~~~~dg~i~iw~~  652 (1093)
                      ..++        |+|||.++++++.++.+++|++
T Consensus       241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            5666        9999998999999999999998

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=1.6e-18  Score=197.35  Aligned_cols=221  Identities=12%  Similarity=0.038  Sum_probs=160.4

Q ss_pred             CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE-
Q 001352          335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-  413 (1093)
Q Consensus       335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la-  413 (1093)
                      ...++.+++++++. ++++|+.++ |+||+.........   ...+.. ............|...|.+++|+|+|++|| 
T Consensus        36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav  109 (434)
T 2oit_A           36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNK---PGDDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA  109 (434)
T ss_dssp             CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCC---TTCCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred             CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcc---cccCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence            34789999999998 577888777 89988643211000   000000 000000011224677899999999999999 


Q ss_pred             ---EEEcCCEEEEEEccCC--------CcccceEEeccccccEEEEEeeCC-CCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352          414 ---VAYSKHIVQLYAYHGG--------SDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYS  481 (1093)
Q Consensus       414 ---s~~~d~~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~~~~~  481 (1093)
                         +|+.|++|+|||+.++        +.+.....+.+|...|.+++|+|+ +.  +|++++.||+|++||+.++..+..
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~  187 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA  187 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence               7788999999999765        222233456789999999999998 56  899999999999999999988777


Q ss_pred             eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-------CceEEEEEccCCCEEEEEecCC--
Q 001352          482 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-------LGCTRMAYSANGRRLFSCGTSK--  552 (1093)
Q Consensus       482 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-------~~v~~~~~s~d~~~l~~~~~~~--  552 (1093)
                      ..+|...|.+++|++  +|.+|++|+.||.|++||.+ ......+..+.       ..+.+++|++++.++++.....  
T Consensus       188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~  264 (434)
T 2oit_A          188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT  264 (434)
T ss_dssp             EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred             ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence            778999999999965  57899999999999999998 44444443332       2789999999988887654321  


Q ss_pred             -CCceeEEEEeCCCC
Q 001352          553 -EGESFLVEWNESEG  566 (1093)
Q Consensus       553 -~~~~~i~iwd~~~~  566 (1093)
                       +....+++|++...
T Consensus       265 ~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          265 LETSPDVVMALLPKK  279 (434)
T ss_dssp             SSSCCEEEEEECCCT
T ss_pred             cCCCCceEEEEeccC
Confidence             11234899998764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=2e-17  Score=184.27  Aligned_cols=297  Identities=9%  Similarity=0.017  Sum_probs=197.7

Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecc
Q 001352          497 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  575 (1093)
Q Consensus       497 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  575 (1093)
                      ..++.++++++.++.|++||+.+++....+..+. ..+..++|+|+|++++++..   .++.|.+||+.+++.+..+...
T Consensus         8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~   84 (349)
T 1jmx_B            8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLS   84 (349)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESC
T ss_pred             cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcc
Confidence            4466789999999999999999887776665443 25778999999997776542   2567999999999887776542


Q ss_pred             ccc---CCCeEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCce---EEEEecCCCCCCCceEEEecCCCE
Q 001352          576 QLQ---HNSVSVVHFDTAKDQILAAGDD------------HVIKIWDMNKVQL---LTTIDAGGGLPENPRICFNKNGTL  637 (1093)
Q Consensus       576 ~~~---~~~v~~v~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~  637 (1093)
                      ...   ...+..++|+|+++++++++.+            +.|.+||+.+++.   +......   ..+.+++|+|+|+ 
T Consensus        85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~-  160 (349)
T 1jmx_B           85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP---RQVYLMRAADDGS-  160 (349)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC---SSCCCEEECTTSC-
T ss_pred             cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC---CcccceeECCCCc-
Confidence            200   1237789999999999998865            8999999998543   3344333   2478899999999 


Q ss_pred             EEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceeccee
Q 001352          638 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  717 (1093)
Q Consensus       638 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  717 (1093)
                      +++++  +.|.+||..+++....+........  .+.                     .+           ..+.+|...
T Consensus       161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~--~~~---------------------~~-----------~~~~~~~~~  204 (349)
T 1jmx_B          161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRK--GYS---------------------AP-----------DVLYFWPHQ  204 (349)
T ss_dssp             EEEES--SSEEEECTTTCCEEEEECSTTCCCT--TBC---------------------CC-----------BCCCCCCCC
T ss_pred             EEEcc--CcEEEEeCCCCceeccccccccCCc--ccc---------------------Cc-----------cceeeecCC
Confidence            55553  4499999988766554432110000  000                     00           111222211


Q ss_pred             eccCccccccccCccccccceEEEEeecCCceE-----------EEeeccceeEEeeecCcccCcCcccccccCCcccCC
Q 001352          718 FARPSECQSLLLPSKVKANKISRLTYNNGGQAI-----------FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP  786 (1093)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l-----------~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~  786 (1093)
                      ....            .......+++++++...           ..-..++.+.+|++.                     
T Consensus       205 ~~~~------------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  251 (349)
T 1jmx_B          205 SPRH------------EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA---------------------  251 (349)
T ss_dssp             CTTC------------EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE---------------------
T ss_pred             Ccce------------eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc---------------------
Confidence            0000            00122345555544211           111222333333321                     


Q ss_pred             CCCCceeeccCCCCCCCCCeeEEEEcc-CCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeC
Q 001352          787 RHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD  865 (1093)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~  865 (1093)
                                    .+...+..++++| ||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|++++.
T Consensus       252 --------------~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~  314 (349)
T 1jmx_B          252 --------------DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGT  314 (349)
T ss_dssp             --------------ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESB
T ss_pred             --------------cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecC
Confidence                          1345678999999 99999988 89999999999998888763 34577999999 8888888888


Q ss_pred             CCeEEEEEcCCcceeeecccc
Q 001352          866 DSTILIYNARSSEVISKLEGH  886 (1093)
Q Consensus       866 dg~i~iwd~~~~~~~~~l~~h  886 (1093)
                      ++.|.+||+.+++.+..+...
T Consensus       315 ~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          315 FNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             SSEEEEEETTTTEEEEEEECS
T ss_pred             CCeEEEEeccccceeeeeecC
Confidence            999999999999888777644

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=1.1e-17  Score=189.53  Aligned_cols=295  Identities=11%  Similarity=0.018  Sum_probs=198.6

Q ss_pred             ecCCCCCeEE-----EEECCCCCEEEEEEc-CC--EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC
Q 001352          393 VRDPGVSVNR-----VVWSPDGSLLGVAYS-KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD  464 (1093)
Q Consensus       393 ~~~h~~~V~~-----v~~s~dg~~las~~~-d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~  464 (1093)
                      +..|......     .+|||||++||+++. ++  .|.+||+.+++...   ...++...+..++|+|||+  .|+.++.
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~  100 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD  100 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence            5566666666     899999999999987 66  48888998876433   2345555566788999999  7888888


Q ss_pred             CCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEe----------------------cCCeEEEEEcCCCCc
Q 001352          465 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------------------VDGKIKAWLYDSLGA  522 (1093)
Q Consensus       465 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------------------~dg~i~vwd~~~~~~  522 (1093)
                      ++.|++||+.+++....+..+...+....+..++++.+++...                      .++.|.+||+.+++.
T Consensus       101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            8999999999998877777666666555554467777777432                      346799999988764


Q ss_pred             eEEecCCCCceEEEEEcc-CCCEEEEEecCCC--CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeC
Q 001352          523 RVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD  599 (1093)
Q Consensus       523 ~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  599 (1093)
                      ... ..+...+..++|+| ||+.|+.+.....  ....|.++|..++..........  ...+....|+|||+.|+..+.
T Consensus       181 ~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          181 TVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE--GESCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             EEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT--TEEEEEEEECTTSSCEEEEEE
T ss_pred             EEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC--CcccccceECCCCCEEEEEec
Confidence            443 34455788999999 9999988765321  14468889987665443333221  124778899999998866442


Q ss_pred             -CC----cEEEEECCCCceEEEEecCCC--C-CCCceEEEecCCCEEEEE---------ECCCeEEEEEcCCCceeeecc
Q 001352          600 -DH----VIKIWDMNKVQLLTTIDAGGG--L-PENPRICFNKNGTLLAVI---------ANENRIKILETPESNSVDAAG  662 (1093)
Q Consensus       600 -dg----~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~~  662 (1093)
                       ++    .|++||+.+++..........  . ......+|+|||+.|+..         ..+..|++|++.+++. ..+.
T Consensus       258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~  336 (388)
T 3pe7_A          258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVA  336 (388)
T ss_dssp             ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEE
T ss_pred             CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEec
Confidence             22    399999999875443322210  0 012335799999988864         4467899999987654 2333


Q ss_pred             cccc-----------cceeeeecCCCceeeeeccCCceEecCCCCCCCccceeec-ccccceecceee
Q 001352          663 VLSD-----------NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE-AENKSEVEKPLF  718 (1093)
Q Consensus       663 ~~~~-----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~-~d~~i~~w~~~~  718 (1093)
                      .+..           .+..++|                      +|||+.++..+ .++...+|.+..
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~----------------------spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          337 RHDTSWKVFEGDRQVTHPHPSF----------------------TPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             ECCCCCCCBTTBSSTTCCCCEE----------------------CTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             cccCcccccccccccCCCCccC----------------------CCCCCEEEEEecCCCceeEEEEEC
Confidence            2222           2333333                      57887776544 567777877653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=3.3e-17  Score=183.21  Aligned_cols=249  Identities=9%  Similarity=0.104  Sum_probs=169.4

Q ss_pred             CCeeEEEEccCCCEEEEEeCCeEEEEEcc-CceeEEEECC-CCCCeEEEEEcCCCCCE--EEEEe-------------CC
Q 001352          804 EAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHDNNV--IAIGM-------------DD  866 (1093)
Q Consensus       804 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~s~~d~~~--lasg~-------------~d  866 (1093)
                      ..+..++|+|||++|++++.+.|.+|++. +++....... ..+...+++|+| ++++  ++++.             .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence            45778999999999988886699999997 7876543321 112356789999 8884  55553             68


Q ss_pred             CeEEEEEcC-Ccceeeecc----cccCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCC-CCceeeeeeeecCCCcccCCCC
Q 001352          867 STILIYNAR-SSEVISKLE----GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPS  939 (1093)
Q Consensus       867 g~i~iwd~~-~~~~~~~l~----~h~~~V~~l~~s~dg~~l~s~s~-dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~  939 (1093)
                      |.+.+|++. +++....+.    .+...+.+++|+|||++|++++. ++.|++|++. +++......+.... +   ...
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~---g~~  194 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-P---GDH  194 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-T---TCC
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-C---CCC
Confidence            999999997 466544443    24567999999999998887664 6789999998 66543222222111 0   125


Q ss_pred             ceEEEEccCCCEEEEEe--CCeEEEEEcC--Ccceee---ee--ec----CCCC------CEEEEE-EccCCCEEEEEeC
Q 001352          940 ETHIQFHKDQTRFLLVH--ETHLAIYEAE--ELTCLK---QW--FP----ISSV------PISQAT-FSCDCRMVFTSFV  999 (1093)
Q Consensus       940 v~~~~~s~dg~~l~~~~--d~~i~vwd~~--~~~~~~---~~--~~----~h~~------~v~~~~-fs~dg~~l~t~~~  999 (1093)
                      +..++|+|||++|+++.  ++.+.+|++.  +|+...   .+  ..    +|..      .+..++ |||||++|+++..
T Consensus       195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence            78999999999998853  5789999875  565421   11  11    1222      488999 9999999887764


Q ss_pred             CC------cEEEEEcC-CCceEEEeccccccCCCCCCCccceeEEEeCCC--CCCEEEEEeCC-CcEEEEecCCC
Q 001352         1000 DG------TLSIHEAS-NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTN-GEVYVIEPNEP 1064 (1093)
Q Consensus      1000 dg------~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~~~l~~~~~d-g~v~~w~~~~~ 1064 (1093)
                      +.      +|.+|++. ++++...........     .  .+..++|+|.  |+++|++++.+ ++|.+|++...
T Consensus       275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~-----~--~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT-----S--GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ESSTTSCCEEEEEEECTTSCEEEEEEEEECSS-----C--CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCCeEEEEEECCCCCEEEeeeeeecCC-----C--CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            32      89999996 566443211011011     1  1224678884  47889888875 89999998654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=1.1e-16  Score=177.63  Aligned_cols=297  Identities=11%  Similarity=0.127  Sum_probs=202.5

Q ss_pred             CCCceEEEEE-----ccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc--
Q 001352          345 PVQHTLLLVG-----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS--  417 (1093)
Q Consensus       345 pdg~~llasg-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~--  417 (1093)
                      +++++++++.     ..|+.|.+||..+++.+..                   +..+..+  .++|||||++|+++..  
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~   71 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYH   71 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecc
Confidence            4666655543     2378999999999987754                   3334444  8999999999999863  


Q ss_pred             --------CCEEEEEEccCCCcccceEEecc---ccccEEEEEeeCCCCcEEEEEEc--CCCcEEEEECCCCceeEE-ee
Q 001352          418 --------KHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYS-FE  483 (1093)
Q Consensus       418 --------d~~i~iwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~~-~~  483 (1093)
                              +++|.+||..+++.+..+.....   +......++|+|||+  +|+++.  .+++|.+||+.+++.+.+ +.
T Consensus        72 ~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~  149 (361)
T 2oiz_A           72 ERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTA  149 (361)
T ss_dssp             TTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred             cccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence                    66899999998876554322111   224567899999999  455544  368999999999998887 65


Q ss_pred             cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE-E------ecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001352          484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-D------YDAPGLGCTRMAYSANGRRLFSCGTSKEGES  556 (1093)
Q Consensus       484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~------~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~  556 (1093)
                      ...  ...+.+.|.+ ...+++.+.||.+.+|++....... .      +.....+ ..+.+++++..++..+.    ++
T Consensus       150 ~~~--~~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~  221 (361)
T 2oiz_A          150 AAG--CWSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YG  221 (361)
T ss_dssp             GTT--EEEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TS
T ss_pred             CCC--cceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CC
Confidence            322  1223344433 2578889999999999987533322 1      1111112 23345677877776654    45


Q ss_pred             eEEEEeCCCCeee--eeeeccc---cc----CCCeEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCceEEE
Q 001352          557 FLVEWNESEGAIK--RTYQGLQ---LQ----HNSVSVVHFDTAKDQILAAGD-----------DHVIKIWDMNKVQLLTT  616 (1093)
Q Consensus       557 ~i~iwd~~~~~~~--~~~~~~~---~~----~~~v~~v~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~  616 (1093)
                      .|+++|...+...  ..+....   ..    ......++|+|++++++++..           .+.|.+||+.+++.+..
T Consensus       222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~  301 (361)
T 2oiz_A          222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR  301 (361)
T ss_dssp             EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred             eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence            6999998755321  2211000   00    011123689999988887643           35899999999999999


Q ss_pred             EecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC--ceeeecccccccceeeeecCCC
Q 001352          617 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPIS  677 (1093)
Q Consensus       617 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~  677 (1093)
                      +..+.    ...++|+|||++|+++.. +.|.+||..++  +.+..+.........++++|++
T Consensus       302 i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G  359 (361)
T 2oiz_A          302 IPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG  359 (361)
T ss_dssp             EECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred             EecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence            98764    789999999999998887 99999999999  8887765555666667776543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=4.7e-16  Score=172.62  Aligned_cols=313  Identities=10%  Similarity=0.097  Sum_probs=209.3

Q ss_pred             CccEEEEEe------cCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec------CCCCceeEEEEeCCCC
Q 001352          499 NIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT------SKEGESFLVEWNESEG  566 (1093)
Q Consensus       499 ~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~------~~~~~~~i~iwd~~~~  566 (1093)
                      ++.++++..      .|+.|.+||..+++....+.....+  .++|+|||++++++..      .++.++.|.+||..++
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            455565553      4789999999888877766655444  8999999999998863      1223567999999999


Q ss_pred             eeeeeeecccc---cCCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEE-EecCCCCCCCceEEEecCC-CEEE
Q 001352          567 AIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTT-IDAGGGLPENPRICFNKNG-TLLA  639 (1093)
Q Consensus       567 ~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l~  639 (1093)
                      +.+..+.....   .......++++|+|++++++..  +++|.+||+.+++.+.. +...+    ...+.+.|++ ..++
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~  167 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM  167 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence            88887764310   1235677899999999999763  68999999999988877 65432    2335677765 6788


Q ss_pred             EEECCCeEEEEEcCC-CceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceee
Q 001352          640 VIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  718 (1093)
Q Consensus       640 ~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  718 (1093)
                      +.+.||.+.+|+... ++......                                               ...+|+...
T Consensus       168 ~~~~dg~~~~v~~~~~g~~~~~~~-----------------------------------------------~~~~~~~~~  200 (361)
T 2oiz_A          168 TICGDGGLLTINLGEDGKVASQSR-----------------------------------------------SKQMFSVKD  200 (361)
T ss_dssp             EEETTSSEEEEEECTTSSEEEEEE-----------------------------------------------CCCCSCTTT
T ss_pred             EECCCCcEEEEEECCCCcEeeecc-----------------------------------------------ccceEcCCC
Confidence            888999999998764 22221100                                               001111100


Q ss_pred             ccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCC
Q 001352          719 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT  798 (1093)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (1093)
                                       .. ..+.+++++..++..+.++.+.++++.......         +..|........   ...
T Consensus       201 -----------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~---~~~  250 (361)
T 2oiz_A          201 -----------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDK---AKN  250 (361)
T ss_dssp             -----------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHH---HTT
T ss_pred             -----------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccc---ccc
Confidence                             00 011224555555555666777777764321100         000110000000   000


Q ss_pred             CCCCCCCeeEEEEccCCCEEEEEe------------CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001352          799 DSNSQEAVPCFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD  866 (1093)
Q Consensus       799 ~~~~~~~v~~l~~s~dg~~la~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d  866 (1093)
                      .  .......++|+||++.+.++.            .+.|.+||+.+++.+.++..+.  +.+++|+| |+++|+++.. 
T Consensus       251 ~--~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-  324 (361)
T 2oiz_A          251 W--VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-  324 (361)
T ss_dssp             C--EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-
T ss_pred             c--ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-
Confidence            0  011122378999988777653            2479999999999999998776  99999999 8889998887 


Q ss_pred             CeEEEEEcCCc--ceeeecccccCCeEEEEEeCCCC
Q 001352          867 STILIYNARSS--EVISKLEGHSKRVTGLVFSDALN  900 (1093)
Q Consensus       867 g~i~iwd~~~~--~~~~~l~~h~~~V~~l~~s~dg~  900 (1093)
                      +.|.+||..++  +.+..+..+......++++|||+
T Consensus       325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            99999999999  99988877778889999999986

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=1.5e-16  Score=177.78  Aligned_cols=250  Identities=9%  Similarity=0.057  Sum_probs=172.6

Q ss_pred             CCCCeEEEEECCCCCEEEEEEcCCEEEEEEcc-CCCcccceEEeccccccEEEEEeeCCCCcEEEEEEc-----------
Q 001352          396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----------  463 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-----------  463 (1093)
                      +...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++           
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence            34568899999999999999888 89999997 665332 1121111 235568999999853355553           


Q ss_pred             --CCCcEEEEECC-CCceeEEee----cCCCCeEEeeecccCCccEEEEEe-cCCeEEEEEcC-CCCceE--Eec--CCC
Q 001352          464 --DDKTIKVWDAV-TGSRTYSFE----GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARV--DYD--APG  530 (1093)
Q Consensus       464 --~d~~i~vwd~~-~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~vwd~~-~~~~~~--~~~--~~~  530 (1093)
                        .++++.+|++. +|+....+.    .+...+.+++|+  +||++++++. .++.|++|+++ +++...  .+.  .+.
T Consensus       115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s--pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T 1jof_A          115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD--PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC--CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence              68999999997 576654443    245678888885  4667777765 46899999998 554432  232  235


Q ss_pred             CceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeeee---eeecccc----cCC------CeEEEE-EcCCCCEE
Q 001352          531 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR---TYQGLQL----QHN------SVSVVH-FDTAKDQI  594 (1093)
Q Consensus       531 ~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~~----~~~------~v~~v~-~~~~~~~l  594 (1093)
                      ..+..++|+|||++++++..   .++.|.+|+..  +++...   .+.....    +..      .+..++ |+|+|+++
T Consensus       193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l  269 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence            67899999999999988764   24568887654  565421   2221110    011      478899 99999998


Q ss_pred             EEEeCC-C-----cEEEEECC-CCceEEE---EecCCCCCCCceEEEec---CCCEEEEEECC-CeEEEEEcCCC
Q 001352          595 LAAGDD-H-----VIKIWDMN-KVQLLTT---IDAGGGLPENPRICFNK---NGTLLAVIANE-NRIKILETPES  655 (1093)
Q Consensus       595 ~~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~~~~l~~~~~d-g~i~iw~~~~~  655 (1093)
                      +++..+ +     .|.+|++. +++....   ....  ......++|+|   +|++|+++..+ +.|.+|++...
T Consensus       270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            876543 2     89999996 6665432   2222  22367899999   89999998864 89999998765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.76  E-value=5.4e-17  Score=184.30  Aligned_cols=283  Identities=10%  Similarity=-0.024  Sum_probs=186.3

Q ss_pred             CceeeeecCCCceEEEEEccC--CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCC-eEEEEECCCCCEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWSPDGSLLG  413 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~s~dg~~la  413 (1093)
                      .+..++|||||++++++...+  ..|.+||+.+++...                    +..+... ...+.|||||++|+
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~--------------------l~~~~~~~~~~~~~spdg~~l~   96 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ--------------------LTEGKGDNTFGGFISTDERAFF   96 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE--------------------CCCSSCBCTTTCEECTTSSEEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE--------------------eecCCCCccccceECCCCCEEE
Confidence            488999999999755555443  368888998886543                    2223333 33478999999999


Q ss_pred             EEEcCCEEEEEEccCCCcccceEEeccccccEEE-------------------EEeeCCCCcEEEEEE-----cCCCcEE
Q 001352          414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-------------------LAFSAPCKQISVITC-----GDDKTIK  469 (1093)
Q Consensus       414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-------------------~~~s~d~~~l~l~s~-----~~d~~i~  469 (1093)
                      +++.++.|++||+.+++...   ....+......                   ++|+|+++.  ++..     ..+..|.
T Consensus        97 ~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~  171 (396)
T 3c5m_A           97 YVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLI  171 (396)
T ss_dssp             EEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEE
T ss_pred             EEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEE
Confidence            99999999999999876432   22223332222                   356788873  3333     4567899


Q ss_pred             EEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCC-CCceEEEEEccCC
Q 001352          470 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANG  542 (1093)
Q Consensus       470 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~d~  542 (1093)
                      +||+.+++..... .+...+..+.|++. ++..|+..+.+      ..|.+||+............ ...+..++|+|||
T Consensus       172 ~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg  249 (396)
T 3c5m_A          172 KVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDG  249 (396)
T ss_dssp             EEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTS
T ss_pred             EEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCC
Confidence            9999998865544 46677888888652 45556655543      35888887655433322211 2357889999999


Q ss_pred             CEEEEEecCC-CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC-CCCEEEEEe----------------CCCcEE
Q 001352          543 RRLFSCGTSK-EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAG----------------DDHVIK  604 (1093)
Q Consensus       543 ~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~----------------~dg~i~  604 (1093)
                      ++|+..+... .....|++||+.+++....... .    ... +.|+| +++.+++++                .++.|+
T Consensus       250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~  323 (396)
T 3c5m_A          250 SAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLY  323 (396)
T ss_dssp             SCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEE
T ss_pred             CEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEE
Confidence            9888775422 1225599999998876543322 1    123 88999 999888754                347899


Q ss_pred             EEECCCCceEEEEecCCCC--------CCCceEEEecCCCEEEEEEC-CCeEEEEEc
Q 001352          605 IWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENRIKILET  652 (1093)
Q Consensus       605 iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~  652 (1093)
                      +||+.+++...........        ..+..++|+|+|+.|+..+. ++...+|.+
T Consensus       324 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          324 VLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             EEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence            9999888764333222110        02466899999999888775 455555543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.73  E-value=9.7e-15  Score=169.86  Aligned_cols=329  Identities=11%  Similarity=0.106  Sum_probs=223.0

Q ss_pred             ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceEEEEecCCCCCCCceEEEe
Q 001352          555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s  632 (1093)
                      ++.|.++|..+++.+..+...    ..+..+.|+||++++++++.++.|.+||+.  +++.+..+.....   ...++|+
T Consensus       176 ~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~---P~~ia~s  248 (567)
T 1qks_A          176 AGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE---ARSIETS  248 (567)
T ss_dssp             TTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE---EEEEEEC
T ss_pred             CCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC---CceeEEc
Confidence            667999999999998887653    356789999999999999999999999996  8888888775432   5789999


Q ss_pred             ----cCCCEEEEEEC-CCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001352          633 ----KNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  707 (1093)
Q Consensus       633 ----~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~  707 (1093)
                          |||++++++.. ++++.++|..+.+.+..+......+....+.                                 
T Consensus       249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~---------------------------------  295 (567)
T 1qks_A          249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH---------------------------------  295 (567)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE---------------------------------
T ss_pred             cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccccc---------------------------------
Confidence                69998887765 5999999988876665443211000000000                                 


Q ss_pred             cccceecceeeccCccccccccCccccccceEEEEeecCCceEEEee-ccceeEEeeecCcccCcCcccccccCCcccCC
Q 001352          708 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP  786 (1093)
Q Consensus       708 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~  786 (1093)
                                                ....+..+.+++++..++... ..|.+.++++.....                 
T Consensus       296 --------------------------p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-----------------  332 (567)
T 1qks_A          296 --------------------------PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-----------------  332 (567)
T ss_dssp             --------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----------------
T ss_pred             --------------------------CCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-----------------
Confidence                                      112456677777766554443 447887777543210                 


Q ss_pred             CCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEccCceeEEEECC-----CCCCeEEEEEcCCCCCE
Q 001352          787 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNV  859 (1093)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~  859 (1093)
                           +.....   .......++.|+|||++++++.  ++.|.++|+.+++.+..+..     |.+.-..+ ++|+.+.+
T Consensus       333 -----~~v~~i---~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v  403 (567)
T 1qks_A          333 -----LKTTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPV  403 (567)
T ss_dssp             -----EEEEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEE
T ss_pred             -----ceeeee---eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcE
Confidence                 111001   1233456789999999998886  58999999999998877654     32222222 57733555


Q ss_pred             EEEEe-CCCeEEEEEcCC-------cceeeecccccCCeEEEEEeCCCCEEEEEeC-------CCcEEEEeCCCCce---
Q 001352          860 IAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGI---  921 (1093)
Q Consensus       860 lasg~-~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-------dg~i~iwd~~~~~~---  921 (1093)
                      .+++. .++.|.++|..+       .+.+.++......-..+..+|++++|.+...       ..+|.++|+.+.+.   
T Consensus       404 ~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~  483 (567)
T 1qks_A          404 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGS  483 (567)
T ss_dssp             EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSS
T ss_pred             EEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccccc
Confidence            55554 468999999988       5677777755444355788999999887663       35899999987521   


Q ss_pred             e-eeeeeecC--CCcccCCCCceEEEEccCCCEEEEE-e-----CCeEEEEEcCCcceeeeee
Q 001352          922 Q-TCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWF  975 (1093)
Q Consensus       922 ~-~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~l~~~-~-----d~~i~vwd~~~~~~~~~~~  975 (1093)
                      . ....+...  .+-......+..+.|+|+|+++.++ .     ++.|.|+|..+++....+.
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          484 DPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             CCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence            1 11222210  0000011358899999999998874 2     6899999999998877644

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.72  E-value=1.4e-15  Score=185.34  Aligned_cols=294  Identities=10%  Similarity=0.002  Sum_probs=194.9

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEE--ccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE-----
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVG--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-----  401 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-----  401 (1093)
                      ..+.+|...|..++|++++- +++++  +.++...||....+.....                   +..|...+.     
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~   76 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFE   76 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGG
T ss_pred             HHHhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccc
Confidence            45678999999999999875 35565  5578899999654443332                   445555555     


Q ss_pred             ----EEEEC--CCCCE-EEEEEc-CCEEEEEEcc--C-CCcccceEEecc-----ccccEEEEEeeCCCCcEEEEEEcCC
Q 001352          402 ----RVVWS--PDGSL-LGVAYS-KHIVQLYAYH--G-GSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDD  465 (1093)
Q Consensus       402 ----~v~~s--~dg~~-las~~~-d~~i~iwd~~--~-~~~~~~~~~~~~-----h~~~v~~~~~s~d~~~l~l~s~~~d  465 (1093)
                          ..+|+  |||++ |+.++. +..|.+|++.  + ++ .+   .+..     |...+.+++|+|||+  .|++++.|
T Consensus        77 ~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~  150 (662)
T 3azo_A           77 YSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEE  150 (662)
T ss_dssp             TCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEE
T ss_pred             cCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEec
Confidence                56565  99999 887654 4556666665  2 33 22   3444     677899999999999  67766665


Q ss_pred             ----------CcEEEEECCC------CceeEEee-cCCCCeEEeeecccCCccEEEEEecCC--------eEEEEEcC-C
Q 001352          466 ----------KTIKVWDAVT------GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDG--------KIKAWLYD-S  519 (1093)
Q Consensus       466 ----------~~i~vwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg--------~i~vwd~~-~  519 (1093)
                                ..|++||+.+      ++ ...+. .+...+..++|  ++||++|+.++.++        .|++||+. +
T Consensus       151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~  227 (662)
T 3azo_A          151 FTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTED  227 (662)
T ss_dssp             ECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred             ccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence                      5899999988      54 44555 55666777777  55788898887653        79999998 4


Q ss_pred             C---CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCC-----CeEEEEEcCCC
Q 001352          520 L---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN-----SVSVVHFDTAK  591 (1093)
Q Consensus       520 ~---~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~v~~~~~~  591 (1093)
                      +   ........+...+..++|+|||++++++..  ++...|++||..+++.......+.....     .+..++|+|++
T Consensus       228 g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~  305 (662)
T 3azo_A          228 GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG  305 (662)
T ss_dssp             SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred             CcccccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence            5   333333444678899999999995555433  3344788999878876555443321100     15678999999


Q ss_pred             CEEEEEeCCCcEEEE--ECCCCceEEEEecCCCCCCCceEEEecCCCE--EEEEECCC--eEEEEEcCCCcee
Q 001352          592 DQILAAGDDHVIKIW--DMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANEN--RIKILETPESNSV  658 (1093)
Q Consensus       592 ~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg--~i~iw~~~~~~~~  658 (1093)
                      ..+++++. +.++||  |..+++ +..+..+.  ..+..+ +++++..  ++.++.+.  .|.++++.+++..
T Consensus       306 ~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~  373 (662)
T 3azo_A          306 LIAVVHGK-GAAVLGILDPESGE-LVDAAGPW--TEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRAR  373 (662)
T ss_dssp             CEEEEEBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             EEEEEEEc-CccEEEEEECCCCc-EEEecCCC--CeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence            99999888 999999  655555 45554432  234444 1444443  34445554  4555566666543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.70  E-value=4e-14  Score=164.74  Aligned_cols=325  Identities=13%  Similarity=0.136  Sum_probs=219.6

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC--CCceeeecccccc
Q 001352          589 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSD  666 (1093)
Q Consensus       589 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~  666 (1093)
                      |.+..+++...++.|.++|..+++.+..+....   .+..++|+|||+++++++.++.|.+||+.  +.+.+..+.    
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~----  237 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK----  237 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----
Confidence            344556667789999999999999999887543   35689999999999999999999999985  443332221    


Q ss_pred             cceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEee--
Q 001352          667 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN--  744 (1093)
Q Consensus       667 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s--  744 (1093)
                                                                                         .......++|+  
T Consensus       238 -------------------------------------------------------------------~G~~P~~ia~s~~  250 (567)
T 1qks_A          238 -------------------------------------------------------------------IGSEARSIETSKM  250 (567)
T ss_dssp             -------------------------------------------------------------------CCSEEEEEEECCS
T ss_pred             -------------------------------------------------------------------cCCCCceeEEccc
Confidence                                                                               01124568888  


Q ss_pred             --cCCceEEEeecc-ceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCC------CC-CCCeeEEEEccC
Q 001352          745 --NGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS------NS-QEAVPCFALSKN  814 (1093)
Q Consensus       745 --~~g~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~v~~l~~s~d  814 (1093)
                        |||++++++... +.+.++|....                      +.+......+.      .| ...+..+.++++
T Consensus       251 ~~pDGk~l~v~n~~~~~v~ViD~~t~----------------------~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~  308 (567)
T 1qks_A          251 EGWEDKYAIAGAYWPPQYVIMDGETL----------------------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHY  308 (567)
T ss_dssp             TTCTTTEEEEEEEETTEEEEEETTTC----------------------CEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred             cCCCCCEEEEEEccCCeEEEEECCCC----------------------cEEEEEeccccccccccccCCCceEEEEEcCC
Confidence              689888777654 78888774332                      11211111100      01 236778999998


Q ss_pred             CCEEEEEe--CCeEEEEEccCceeEE--EECCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCCcceeeeccc----
Q 001352          815 DAYLFSAS--GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG----  885 (1093)
Q Consensus       815 g~~la~~~--dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~i~iwd~~~~~~~~~l~~----  885 (1093)
                      +..+++..  .|.|.++|..+.+...  .+. .......+.|+| ++++++++. .++.|.++|+.+++.+..+.-    
T Consensus       309 ~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~  386 (567)
T 1qks_A          309 RPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT  386 (567)
T ss_dssp             SSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred             CCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence            87666654  4999999987654322  222 344577889999 888776655 578999999999987765542    


Q ss_pred             -ccCCeEEEEEeCCCCEE-EEEe-CCCcEEEEeCCCCc-----eeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEe-
Q 001352          886 -HSKRVTGLVFSDALNIL-VSSG-GDAQIFVWDVDGWG-----IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-  956 (1093)
Q Consensus       886 -h~~~V~~l~~s~dg~~l-~s~s-~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-  956 (1093)
                       |.+.-.. -++|++..+ +++. .++.|.++|..+.+     ......+....+      .-..+.++||++++.+.. 
T Consensus       387 Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~------g~~~i~~~p~~~~l~v~~~  459 (567)
T 1qks_A          387 PHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG------GSLFIKTHPNSQYLYVDAT  459 (567)
T ss_dssp             BCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS------CCCCEECCTTCSEEEEECT
T ss_pred             CCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC------CCEEEEeCCCCCeEEEecC
Confidence             4332222 257875544 4443 46899999998732     111122222211      234578999999999854 


Q ss_pred             -------CCeEEEEEcCCc-----cee-eeeec-------CCCCCEEEEEEccCCCEEEEEe-----CCCcEEEEEcCCC
Q 001352          957 -------ETHLAIYEAEEL-----TCL-KQWFP-------ISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNL 1011 (1093)
Q Consensus       957 -------d~~i~vwd~~~~-----~~~-~~~~~-------~h~~~v~~~~fs~dg~~l~t~~-----~dg~v~vwd~~~~ 1011 (1093)
                             .++|.|+|+.+.     ... ..+..       ....++..+.|++||+.+..+.     .++.|.|+|..++
T Consensus       460 ~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~  539 (567)
T 1qks_A          460 LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL  539 (567)
T ss_dssp             TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             CCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence                   358999999877     211 22211       1245789999999999877663     3789999999999


Q ss_pred             ceEEEec
Q 001352         1012 EVQCRIL 1018 (1093)
Q Consensus      1012 ~~~~~~~ 1018 (1093)
                      ++..++.
T Consensus       540 ~~~~~i~  546 (567)
T 1qks_A          540 ELKHVIK  546 (567)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEeC
Confidence            9998886

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.70  E-value=4.1e-15  Score=165.22  Aligned_cols=262  Identities=10%  Similarity=0.115  Sum_probs=178.9

Q ss_pred             CceeeeecCCCceEEEEEc--------cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          337 SPMSMDFHPVQHTLLLVGT--------NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      .+..+++  ||++++.+..        .++.|.+||+.+++...                    +    ..+.+++||||
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~SpD   69 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISPD   69 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECTT
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECCC
Confidence            6778888  9987555431        25679999999886432                    2    46888999999


Q ss_pred             CCEEEEEEcC---C--EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC-------------------
Q 001352          409 GSLLGVAYSK---H--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-------------------  464 (1093)
Q Consensus       409 g~~las~~~d---~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-------------------  464 (1093)
                      |++||+++.+   +  .|.+||+.+++...    +..+.. +..++|+|||+.  |+.++.                   
T Consensus        70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~  142 (347)
T 2gop_A           70 GKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWFD  142 (347)
T ss_dssp             SSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC--
T ss_pred             CCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceeec
Confidence            9999988754   3  47788888765332    223334 999999999994  555442                   


Q ss_pred             --------CCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCC-------eEEEEEcCCCCceEEecCC
Q 001352          465 --------DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-------KIKAWLYDSLGARVDYDAP  529 (1093)
Q Consensus       465 --------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~vwd~~~~~~~~~~~~~  529 (1093)
                              ...|.+||+.+++.+..+.. . .+..++|+  +|| +++++..++       ...+|.++ ......+..+
T Consensus       143 g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~  216 (347)
T 2gop_A          143 DLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK  216 (347)
T ss_dssp             -------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE
T ss_pred             CcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEeccC
Confidence                    25799999999887555654 3 67777885  577 777776542       44556555 3333333333


Q ss_pred             CCceEEEEEccCCCEEEEEecCCC----CceeEEEEeCCCCeeeeeeecccccCCCeEE-EEEcCCCCEEEEEeCCCcEE
Q 001352          530 GLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNESEGAIKRTYQGLQLQHNSVSV-VHFDTAKDQILAAGDDHVIK  604 (1093)
Q Consensus       530 ~~~v~~~~~s~d~~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-v~~~~~~~~l~~~~~dg~i~  604 (1093)
                       ..+..+  +|||++|+..+....    ....|++||  +++.......+.   ..+.. +.|+ ++ .+++++.++.++
T Consensus       217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~  286 (347)
T 2gop_A          217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN  286 (347)
T ss_dssp             -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred             -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence             344443  999999988764321    235789999  666554444444   56775 8999 88 888899999999


Q ss_pred             EEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeE-EEEEcC
Q 001352          605 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETP  653 (1093)
Q Consensus       605 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i-~iw~~~  653 (1093)
                      +| +.+++.......   ...+.+++|+|  .++++++.++.. .+|.+.
T Consensus       287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            99 876665444432   23578899999  677777777654 777765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.69  E-value=1.5e-15  Score=185.12  Aligned_cols=209  Identities=9%  Similarity=0.010  Sum_probs=144.4

Q ss_pred             eccccccEEEEEeeCCCCcEEEEEE--cCCCcEEEEECCCCceeEEeecCCCCeE---------EeeecccCCccE-EEE
Q 001352          438 IDAHVGNVNDLAFSAPCKQISVITC--GDDKTIKVWDAVTGSRTYSFEGHGAPVY---------SLCPHAKENIHF-IFS  505 (1093)
Q Consensus       438 ~~~h~~~v~~~~~s~d~~~l~l~s~--~~d~~i~vwd~~~~~~~~~~~~h~~~v~---------~~~~~~~~~~~~-l~s  505 (1093)
                      +.+|...+..++|++++-  ++++.  +.++...||....+.....+..|...+.         ...|+.++||+. |+.
T Consensus        19 ~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             HhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            557889999999997754  67777  6688999999766666777777776655         455553467777 665


Q ss_pred             Eec-CCeEEEEEcC--CCCceEEecC-----CCCceEEEEEccCCCEEEEEecCC------CCceeEEEEeCCC------
Q 001352          506 ISV-DGKIKAWLYD--SLGARVDYDA-----PGLGCTRMAYSANGRRLFSCGTSK------EGESFLVEWNESE------  565 (1093)
Q Consensus       506 ~~~-dg~i~vwd~~--~~~~~~~~~~-----~~~~v~~~~~s~d~~~l~~~~~~~------~~~~~i~iwd~~~------  565 (1093)
                      ++. +..|.++++.  .......+..     +...+..++|+|||+.|++++.+.      .+...|++||+.+      
T Consensus        97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  176 (662)
T 3azo_A           97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR  176 (662)
T ss_dssp             EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred             EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence            543 4566666654  2033444444     455788999999999999887531      2236899999988      


Q ss_pred             Ceeeeeee-cccccCCCeEEEEEcCCCCEEEEEeCC--------CcEEEEECC-CC---ceEEEEecCCCCCCCceEEEe
Q 001352          566 GAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMN-KV---QLLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       566 ~~~~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~~~v~~v~~s  632 (1093)
                      ++.. .+. .+.   ..+..++|+|||++|+.++.+        ..|++||+. ++   +.......+  ...+..++|+
T Consensus       177 ~~~~-~l~~~~~---~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~--~~~~~~~~~s  250 (662)
T 3azo_A          177 SAVR-ELSDDAH---RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP--EEAIAQAEWA  250 (662)
T ss_dssp             GGSE-ESSCSCS---SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET--TBCEEEEEEC
T ss_pred             Ccee-EEEecCC---CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC--CceEcceEEC
Confidence            5543 333 333   567788999999999987754        379999998 56   333333322  2347889999


Q ss_pred             cCCCEEEEEECCC--eEEEEEcCC
Q 001352          633 KNGTLLAVIANEN--RIKILETPE  654 (1093)
Q Consensus       633 ~~~~~l~~~~~dg--~i~iw~~~~  654 (1093)
                      |||++++++..++  .|.+|+..+
T Consensus       251 pdg~l~~~~~~~~~~~l~~~~~~~  274 (662)
T 3azo_A          251 PDGSLIVATDRTGWWNLHRVDPAT  274 (662)
T ss_dssp             TTSCEEEEECTTSSCEEEEECTTT
T ss_pred             CCCeEEEEECCCCCeEEEEEECCC
Confidence            9999777777777  444444433

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.69  E-value=9.2e-16  Score=174.09  Aligned_cols=244  Identities=9%  Similarity=-0.013  Sum_probs=165.6

Q ss_pred             eEEEEECCCCCEEEEEEcC---CEEEEEEccCCCcccceEEeccccccE-EEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352          400 VNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAVT  475 (1093)
Q Consensus       400 V~~v~~s~dg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v-~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  475 (1093)
                      +.+++|||||++|+.+...   ..|.+||+.+++..    .+..+...+ ..+.|+|||+  .|+.++.++.|++||+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~  111 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV----QLTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLET  111 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE----ECCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETTT
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE----EeecCCCCccccceECCCCC--EEEEEEcCCcEEEEECCC
Confidence            7788999999999888553   47889999887532    233333333 3478999999  788888888999999999


Q ss_pred             CceeEEeecCCCCeEE---eee--------------cccCCccEEEEE-----ecCCeEEEEEcCCCCceEEecCCCCce
Q 001352          476 GSRTYSFEGHGAPVYS---LCP--------------HAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGC  533 (1093)
Q Consensus       476 ~~~~~~~~~h~~~v~~---~~~--------------~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~v  533 (1093)
                      ++.......+......   +++              ..++++..++..     ..+..|.+||+.+++..... .+...+
T Consensus       112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~  190 (396)
T 3c5m_A          112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWL  190 (396)
T ss_dssp             CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCE
T ss_pred             CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccc
Confidence            8876655544443222   111              123344444433     35668999999887655444 345578


Q ss_pred             EEEEEcc-CCCEEEEEecCCCC--ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-----CcEEE
Q 001352          534 TRMAYSA-NGRRLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKI  605 (1093)
Q Consensus       534 ~~~~~s~-d~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~i  605 (1093)
                      ..+.|+| +++.++..+.....  ...|++||+.+++.........  ...+..+.|+|+|++|+.++.+     +.|++
T Consensus       191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  268 (396)
T 3c5m_A          191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE--GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK  268 (396)
T ss_dssp             EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT--TEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred             ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC--CccccceEECCCCCEEEEEecCCCCccceEEE
Confidence            8999999 88888777642210  1569999987765443333211  1357889999999988776543     44999


Q ss_pred             EECCCCceEEEEecCCCCCCCceEEEec-CCCEEEEEE----------------CCCeEEEEEcCCCce
Q 001352          606 WDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIA----------------NENRIKILETPESNS  657 (1093)
Q Consensus       606 wd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~----------------~dg~i~iw~~~~~~~  657 (1093)
                      ||+.+++.........    .. ++|+| +|+++++++                .++.|++|++.++..
T Consensus       269 ~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          269 ANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             ECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             EECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence            9999887655443221    23 89999 999888765                347899999887653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=1e-14  Score=160.03  Aligned_cols=248  Identities=12%  Similarity=0.095  Sum_probs=181.3

Q ss_pred             CCCeeEEEEccCCCEEEEEeCC-------------------------eEEEEEccCceeEEEEC-CCCCCeEEEEEcCCC
Q 001352          803 QEAVPCFALSKNDAYLFSASGG-------------------------VISLYIVMTFKTILTIM-PPSPTATSLAFNPHD  856 (1093)
Q Consensus       803 ~~~v~~l~~s~dg~~la~~~dg-------------------------~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d  856 (1093)
                      -..+.+++++|+|+++++...+                         .|.+||..+++.+..+. .+......++++| +
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence            4568999999999999887643                         69999999998887765 3446789999999 8


Q ss_pred             CCEEEEEeCCCeEEEEEcCCcc-eeeec---------ccccCCeEEEEEeC-CCCEEEEEe-CCCcEEEEeCCCCceeee
Q 001352          857 NNVIAIGMDDSTILIYNARSSE-VISKL---------EGHSKRVTGLVFSD-ALNILVSSG-GDAQIFVWDVDGWGIQTC  924 (1093)
Q Consensus       857 ~~~lasg~~dg~i~iwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-dg~~l~s~s-~dg~i~iwd~~~~~~~~~  924 (1093)
                      ++++++...++.|++|+..... .+..+         .++......++++| +++++++.+ .++.|++|+.+. +....
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence            8888888889999999986442 44444         34555789999999 788888886 689999999544 32221


Q ss_pred             eeeecC-----CCcccCCCCceEEEEccC-CCEEEE-EeCCeEEEEEcCCcceeeeee-cCCCCCEEEEEEcc------C
Q 001352          925 RSLQTP-----DGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAEELTCLKQWF-PISSVPISQATFSC------D  990 (1093)
Q Consensus       925 ~~~~~~-----~~~~~~~~~v~~~~~s~d-g~~l~~-~~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~~~fs~------d  990 (1093)
                      ......     .+..   .....++++|+ +.++++ ..+++|++|+..+|+.+..+. ..+...+..++|+|      +
T Consensus       181 ~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~  257 (329)
T 3fvz_A          181 WGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN  257 (329)
T ss_dssp             ECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred             eccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence            100000     0111   24789999999 555555 367799999999898887754 24567889999999      3


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352          991 CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus       991 g~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
                      |..+++...+..|++|++.+++.+..+....       ...-.+..++++| ||.++++...+++|++|++..
T Consensus       258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCCCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred             CCEEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence            3333333344589999999999887764211       1123456789999 578899999999999999854

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=1.6e-14  Score=158.62  Aligned_cols=248  Identities=11%  Similarity=0.085  Sum_probs=184.4

Q ss_pred             CCceeeeecCCCceEEEEEccC------------------------CcEEEEecCCCceeEEeeeeeeecccccceeeee
Q 001352          336 SSPMSMDFHPVQHTLLLVGTNV------------------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA  391 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (1093)
                      +.|.+++++|+|+ ++++...+                        ++|.+||..+|+.+...                 
T Consensus        24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-----------------   85 (329)
T 3fvz_A           24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS-----------------   85 (329)
T ss_dssp             SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----------------
T ss_pred             CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----------------
Confidence            4899999999998 57777766                        47999999988876421                 


Q ss_pred             eecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCC-cccceEEe---------ccccccEEEEEeeC-CCCcEEEE
Q 001352          392 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEI---------DAHVGNVNDLAFSA-PCKQISVI  460 (1093)
Q Consensus       392 ~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~-~~~~~~~~---------~~h~~~v~~~~~s~-d~~~l~l~  460 (1093)
                       -.++-..+..++++|+|+++++...++.|++||..... .+.   .+         .++......++|+| ++.  +++
T Consensus        86 -~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv  159 (329)
T 3fvz_A           86 -GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV  159 (329)
T ss_dssp             -CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred             -CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence             12455678999999999988888889999999986542 222   33         24455789999999 677  677


Q ss_pred             EEc-CCCcEEEEECCCCceeEEeecCC----------CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--
Q 001352          461 TCG-DDKTIKVWDAVTGSRTYSFEGHG----------APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--  527 (1093)
Q Consensus       461 s~~-~d~~i~vwd~~~~~~~~~~~~h~----------~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--  527 (1093)
                      +.+ .++.|++|| .+|+.+..+....          .....+++.+. .+.++++...++.|++|+.++++....+.  
T Consensus       160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~  237 (329)
T 3fvz_A          160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA  237 (329)
T ss_dssp             EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred             EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence            776 689999999 7788877774322          33788888543 25788888889999999998777766663  


Q ss_pred             CCCCceEEEEEccCCCEEEEEec---CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 001352          528 APGLGCTRMAYSANGRRLFSCGT---SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  604 (1093)
Q Consensus       528 ~~~~~v~~~~~s~d~~~l~~~~~---~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~  604 (1093)
                      .....+..++++| +..++..+.   .......|.+||..+++.+..+.....+...+..++++|+|..+++...++.|+
T Consensus       238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~  316 (329)
T 3fvz_A          238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW  316 (329)
T ss_dssp             TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred             ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence            3455788999999 444443321   012245799999999999888753222236789999999997777788899999


Q ss_pred             EEECCC
Q 001352          605 IWDMNK  610 (1093)
Q Consensus       605 iwd~~~  610 (1093)
                      +|++..
T Consensus       317 ~~~~~~  322 (329)
T 3fvz_A          317 KFTLTE  322 (329)
T ss_dssp             EEEEEE
T ss_pred             EEeCCc
Confidence            999753

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.68  E-value=3.3e-14  Score=152.93  Aligned_cols=242  Identities=10%  Similarity=0.091  Sum_probs=175.3

Q ss_pred             CCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECC------CCCCeEEEEEc-CCCCCEEEEEeC-CCeEEEE
Q 001352          802 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP------PSPTATSLAFN-PHDNNVIAIGMD-DSTILIY  872 (1093)
Q Consensus       802 ~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s-~~d~~~lasg~~-dg~i~iw  872 (1093)
                      +-..+.+++++++|+++++.. ++.|.+||.. ++.+..+..      +...+..++++ + +++++++... ++.|++|
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEE
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEE
Confidence            456788999999999888765 6899999987 666666642      33578899994 6 7777776643 8899999


Q ss_pred             EcCCcceeeecc-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCE
Q 001352          873 NARSSEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  951 (1093)
Q Consensus       873 d~~~~~~~~~l~-~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~  951 (1093)
                      | .+++.+..+. .+...+.+++++|+|+++++...++.|.+|+..... ..  .+... +..   ..+..++++++|++
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~--~~~~~-~~~---~~p~~i~~~~~g~l  177 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-LH--KFGCS-KHL---EFPNGVVVNDKQEI  177 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EE--EEECT-TTC---SSEEEEEECSSSEE
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-EE--EeCCC-Ccc---CCcEEEEECCCCCE
Confidence            9 5677766664 345678999999999988888888999999976422 11  11111 111   24789999999997


Q ss_pred             EEEE-eCCeEEEEEcCCcceeeeeec-CCCCCEEEEEEccCCCEEEEEeCCC-cEEEEEcCCCceEEEeccccccCCCCC
Q 001352          952 FLLV-HETHLAIYEAEELTCLKQWFP-ISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTTS 1028 (1093)
Q Consensus       952 l~~~-~d~~i~vwd~~~~~~~~~~~~-~h~~~v~~~~fs~dg~~l~t~~~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~ 1028 (1093)
                      +++. .++.|.+||.. ++.+..+.. ++...+..++++++|.++++...++ .|.+|+. .++.+..+...        
T Consensus       178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~--------  247 (286)
T 1q7f_A          178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK--------  247 (286)
T ss_dssp             EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES--------
T ss_pred             EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc--------
Confidence            7774 57899999974 555554322 2236789999999999988887776 9999995 56666665421        


Q ss_pred             CCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCC
Q 001352         1029 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1065 (1093)
Q Consensus      1029 ~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1065 (1093)
                      .....+..++++| +++++++ +.|++|++|++....
T Consensus       248 ~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          248 VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEccccc
Confidence            1112456788998 5676666 679999999986543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.68  E-value=2e-10  Score=142.29  Aligned_cols=586  Identities=9%  Similarity=0.033  Sum_probs=339.4

Q ss_pred             CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352          336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  415 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~  415 (1093)
                      ..|+++.-.++|..  -.|+.+| +..||-.+   ..     .+......    .  ..-....|.++...++|.+.+ |
T Consensus        43 n~v~~I~qD~~G~l--WigT~~G-L~ryDG~~---f~-----~~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWi-g  104 (795)
T 4a2l_A           43 STVFSIDQDKRGNM--WFATYDG-VNKYDGYA---FT-----VYQHNEDD----P--NSIANDISRIVKTDSQGRVWI-G  104 (795)
T ss_dssp             SCEEEEEECTTSCE--EEEETTE-EEEECSSC---EE-----EECCCTTC----T--TSCSCSCEEEEEECTTSCEEE-E
T ss_pred             ceeEEEEEcCCCCE--EEeecCc-CcccCCCc---eE-----EEeCCCCC----C--CcccccceeEEEECCCCCEEE-E
Confidence            38999999999963  4555665 56666332   11     11100000    0  000246799999999987654 4


Q ss_pred             EcCCEEEEEEccCCCcccceEEeccccc----cEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecC-CCC-e
Q 001352          416 YSKHIVQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAP-V  489 (1093)
Q Consensus       416 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~----~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h-~~~-v  489 (1093)
                      +.+| +..||..+++. .   .+.....    .|.++...++|.  +.+ ++. +.|..||..+++.......+ ... |
T Consensus       105 T~~G-l~~yd~~~~~f-~---~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i  175 (795)
T 4a2l_A          105 TRDG-LSRYDEEKDIF-Q---NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTI  175 (795)
T ss_dssp             ESSC-EEEEETTTTEE-E---EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCC
T ss_pred             eCCc-hheeCCCCCeE-E---eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcce
Confidence            5566 89999877542 1   2221111    288898888887  333 443 45899998776543211111 112 6


Q ss_pred             EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001352          490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  568 (1093)
Q Consensus       490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~  568 (1093)
                      .++...  .++ .+..++.++.+..|+..+....... ......|.++...++|.+.+....     .-+..||..+++.
T Consensus       176 ~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~-----~Gl~~~~~~~~~~  247 (795)
T 4a2l_A          176 ASTLYR--QGD-QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEG-----AGLFLINPKTKEI  247 (795)
T ss_dssp             EEEEEE--ETT-EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBS-----SCEEEEETTTTEE
T ss_pred             EEEEEC--CCC-CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECC-----CCeEEEeCCCCeE
Confidence            776653  344 4555666556888887665433221 123456888888888876665422     1289999887765


Q ss_pred             eeeeecc----cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-----CCCCCceEEEecCCCEEE
Q 001352          569 KRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLA  639 (1093)
Q Consensus       569 ~~~~~~~----~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~  639 (1093)
                      .......    ......|.++...++|.. ..|+.+ .|.+||..+++.........     ....|.++...++|. |.
T Consensus       248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW  324 (795)
T 4a2l_A          248 KNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MW  324 (795)
T ss_dssp             EEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EE
T ss_pred             EEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EE
Confidence            4332211    112356999999888764 445555 58999988776544322110     123477888888886 45


Q ss_pred             EEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeec
Q 001352          640 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA  719 (1093)
Q Consensus       640 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~  719 (1093)
                      +|+.++-|..|+..+.... ....          .                      +.                     
T Consensus       325 igt~~~Gl~~~~~~~~~~~-~~~~----------~----------------------~~---------------------  350 (795)
T 4a2l_A          325 LGTYFGGLNYYHPIRNRFK-NIRN----------I----------------------PY---------------------  350 (795)
T ss_dssp             EEESSSCEEEECGGGGSSE-EECC----------C----------------------TT---------------------
T ss_pred             EEECCCCeEEeCCCcccce-EEcC----------C----------------------CC---------------------
Confidence            5677677777775433111 0000          0                      00                     


Q ss_pred             cCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCC
Q 001352          720 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD  799 (1093)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (1093)
                                +.......|.++...++|. +..++.++.+..|+......            ..+....+.      ...
T Consensus       351 ----------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~------~~~  401 (795)
T 4a2l_A          351 ----------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDE------SAR  401 (795)
T ss_dssp             ----------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC------------
T ss_pred             ----------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCC------ccc
Confidence                      0000234588888888887 55566665666665332211            001000000      000


Q ss_pred             CCCCCCeeEEEEccCCC-EEEEEeCCeEEEEEccCceeEEEEC----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001352          800 SNSQEAVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA  874 (1093)
Q Consensus       800 ~~~~~~v~~l~~s~dg~-~la~~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~  874 (1093)
                      .-....|.+++..++|. +.+...++.|.++|..+++......    .+...|.++...+ ++++.+ |+.+ -+.+|+.
T Consensus       402 ~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~  478 (795)
T 4a2l_A          402 GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNP  478 (795)
T ss_dssp             CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEET
T ss_pred             CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeC
Confidence            00346789999999998 5554446789999998876543322    1345789999988 676555 4454 5889998


Q ss_pred             CCcceeeecc------cccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccC
Q 001352          875 RSSEVISKLE------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  948 (1093)
Q Consensus       875 ~~~~~~~~l~------~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d  948 (1093)
                      .+++......      -+...|.++...++|++.+... .| |..|+..+++. .  ..............|.++...++
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~~~~~~~~-~--~~~~~~~~~l~~~~i~~i~~d~~  553 (795)
T 4a2l_A          479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-LSVFKQEGLDI-Q--KASILPVSNVTKLFTNCIYEASN  553 (795)
T ss_dssp             TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-EEEEEEETTEE-E--ECCCSCSCGGGGSCEEEEEECTT
T ss_pred             CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc-eEEEeCCCCeE-E--EecCCCCCCCCCCeeEEEEECCC
Confidence            8765433221      1236799999999988777554 44 88899877543 1  11000000111136889999999


Q ss_pred             CCEEEEEeCCeEEEEEcCCcceeeeeecC---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCC
Q 001352          949 QTRFLLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1025 (1093)
Q Consensus       949 g~~l~~~~d~~i~vwd~~~~~~~~~~~~~---h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 1025 (1093)
                      |.+.+++.. .+..||..+++... +...   ....|.++...++|.+.+++ . +-|..|+..++... .+....-++.
T Consensus       554 g~lWigT~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~dGl~~  628 (795)
T 4a2l_A          554 GIIWVGTRE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESDGLQS  628 (795)
T ss_dssp             SCEEEEESS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGGTCSC
T ss_pred             CCEEEEeCC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcCCCcc
Confidence            997776554 78899987765432 2211   14578899999999877754 3 45788998876543 3432332332


Q ss_pred             CCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352         1026 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus      1026 ~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
                      .    .+..-++..++ +| .|..|+.+| +..++..
T Consensus       629 ~----~f~~~~~~~~~-~G-~l~~g~~~G-l~~~~p~  658 (795)
T 4a2l_A          629 N----QFNTASYCRTS-VG-QMYFGGING-ITTFRPE  658 (795)
T ss_dssp             S----CEEEEEEEECT-TS-CEEEEETTE-EEEECGG
T ss_pred             c----cCccCceeECC-CC-eEEEecCCc-eEEEcHH
Confidence            2    23233455665 34 466677776 4555653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.66  E-value=2.6e-10  Score=141.30  Aligned_cols=535  Identities=8%  Similarity=0.031  Sum_probs=319.7

Q ss_pred             CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352          336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  415 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~  415 (1093)
                      ..|.++...++|..  -.|+. +.+..||..+++.... ...               .......|.++...++|.+.+. 
T Consensus        88 n~I~~i~~d~~g~l--WigT~-~Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~-  147 (795)
T 4a2l_A           88 DISRIVKTDSQGRV--WIGTR-DGLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIS-  147 (795)
T ss_dssp             SCEEEEEECTTSCE--EEEES-SCEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEE-
T ss_pred             cceeEEEECCCCCE--EEEeC-CchheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEE-
Confidence            47999999999973  33444 4489999887653321 000               0000011888888888876654 


Q ss_pred             EcCCEEEEEEccCCCcccceEEeccc-ccc-EEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe-ecCCCCeEEe
Q 001352          416 YSKHIVQLYAYHGGSDARQQLEIDAH-VGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL  492 (1093)
Q Consensus       416 ~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~-v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~  492 (1093)
                      +. +.|..||..+++.....   .++ ... |.++...+++.   +..+..++.|..||..+++..... ......|.++
T Consensus       148 t~-~gl~~~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i  220 (795)
T 4a2l_A          148 TP-EGLIMFDIKESKFIDDS---FSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAI  220 (795)
T ss_dssp             ET-TEEEEEETTTTEEECSS---SCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEE
T ss_pred             EC-CceEEEECCCCEEEecc---CCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEE
Confidence            44 44899998765321100   011 123 88888888886   344555555899998777654321 1234567777


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352          493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  565 (1093)
Q Consensus       493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~  565 (1093)
                      ...  .++ .+..++.++-+..||..+.........       ....|.++...++|...+...     . -|.+||..+
T Consensus       221 ~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~~  291 (795)
T 4a2l_A          221 LQQ--SPT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEGT  291 (795)
T ss_dssp             EEE--ETT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETTT
T ss_pred             EEc--CCC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCCC
Confidence            653  344 455566554588888766543332211       234689999999888766542     1 289999887


Q ss_pred             Ceeeeeeec----ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC--C--CCCCCceEEEecCCCE
Q 001352          566 GAIKRTYQG----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--G--GLPENPRICFNKNGTL  637 (1093)
Q Consensus       566 ~~~~~~~~~----~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~--~~~~v~~v~~s~~~~~  637 (1093)
                      +........    .......|.++...++|. +..|+.++.|..|+..++.........  .  ....|.+++..++|. 
T Consensus       292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-  369 (795)
T 4a2l_A          292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-  369 (795)
T ss_dssp             TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-
T ss_pred             CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-
Confidence            765433221    112236799999998875 566777778999987765543222111  0  123477888888776 


Q ss_pred             EEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceeccee
Q 001352          638 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  717 (1093)
Q Consensus       638 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  717 (1093)
                      |.+|+.++-|..|+..++.........                                 ..                  
T Consensus       370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~---------------------------------~~------------------  398 (795)
T 4a2l_A          370 LWIGTNDGGLNLYNPITQRFTSYTLQE---------------------------------DE------------------  398 (795)
T ss_dssp             EEEEESSSCEEEECTTTCCEEEECCC------------------------------------------------------
T ss_pred             EEEEECCCCeEEEcCCCCcEEEEecCC---------------------------------CC------------------
Confidence            555777777888887654221110000                                 00                  


Q ss_pred             eccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccC
Q 001352          718 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT  797 (1093)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  797 (1093)
                         +   . .    ......|.++...++|+.|.+++.++.+.+|+......            ..+.....        
T Consensus       399 ---~---~-~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~------------~~~~~~~~--------  447 (795)
T 4a2l_A          399 ---S---A-R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV------------ENFNQRNS--------  447 (795)
T ss_dssp             --------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE------------EEECTTTS--------
T ss_pred             ---c---c-c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE------------EEeecCCC--------
Confidence               0   0 0    00234578888888887455566655677766432211            11110000        


Q ss_pred             CCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECC------CCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001352          798 TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILI  871 (1093)
Q Consensus       798 ~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~i~i  871 (1093)
                        ......|.++...++|.+.+... +.+.+|+..+++.......      ....|.++...+ ++++.+ |+. +-+..
T Consensus       448 --~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~  521 (795)
T 4a2l_A          448 --QLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSV  521 (795)
T ss_dssp             --CCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEE
T ss_pred             --CcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEE
Confidence              01346789999999998777665 5688999887755432211      235789999988 776655 444 45888


Q ss_pred             EEcCCcceeeecc-------cccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEE
Q 001352          872 YNARSSEVISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  944 (1093)
Q Consensus       872 wd~~~~~~~~~l~-------~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  944 (1093)
                      |+..+++.  .+.       .....|.++...++|++.+... .| |..||..+++...   .....+-..  ..|.++.
T Consensus       522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~~---~~~~~gl~~--~~i~~i~  592 (795)
T 4a2l_A          522 FKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIKR---YNTTNGLPN--NVVYGIL  592 (795)
T ss_dssp             EEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEEE---ECGGGTCSC--SCEEEEE
T ss_pred             EeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEEE---eCCCCCCch--hheEEEE
Confidence            99887665  221       2345799999999998776544 34 8889987754322   222222211  3588899


Q ss_pred             EccCCCEEEEEeCCeEEEEEcCCcceeeeeecCC---CCCE--EEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001352          945 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPI--SQATFSCDCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus       945 ~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h---~~~v--~~~~fs~dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
                      ..++|.+.+++ ++.|..|+..+++.. .+....   ...+  .++...+||.+++ |+.+| +..++..
T Consensus       593 ~d~~g~lWi~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~~~p~  658 (795)
T 4a2l_A          593 EDSFGRLWLST-NRGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYF-GGING-ITTFRPE  658 (795)
T ss_dssp             ECTTSCEEEEE-TTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEE-EETTE-EEEECGG
T ss_pred             ECCCCCEEEEc-CCceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCeEEE-ecCCc-eEEEcHH
Confidence            99999877766 567888998776543 222111   2222  4677788997666 56677 4555543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.64  E-value=1.4e-13  Score=147.95  Aligned_cols=246  Identities=12%  Similarity=0.092  Sum_probs=177.1

Q ss_pred             CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEe---ccccccEEEEEee-CCCCcEEEEEEc-CCCcEE
Q 001352          395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFS-APCKQISVITCG-DDKTIK  469 (1093)
Q Consensus       395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~---~~h~~~v~~~~~s-~d~~~l~l~s~~-~d~~i~  469 (1093)
                      ++-..+.+++++++|+++++...++.|.+||.. ++.+......   .+|...+..++++ +++.  ++++.. .++.|+
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~  103 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ  103 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence            455779999999999988888889999999987 4433311100   1345678999995 6665  555553 388999


Q ss_pred             EEECCCCceeEEeec-CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEccCCCEEE
Q 001352          470 VWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLF  546 (1093)
Q Consensus       470 vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~  546 (1093)
                      +|| .+++.+..+.. +...+..+++.+  ++.++++...++.|.+||.. +.....+.  .....+..++++++|+.++
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v  179 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI  179 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence            999 77887777643 345678888854  66777877788999999964 33344443  3334688999999999776


Q ss_pred             EEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceEEEEecCCCCCC
Q 001352          547 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-VIKIWDMNKVQLLTTIDAGGGLPE  625 (1093)
Q Consensus       547 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~  625 (1093)
                      +...    ++.|++||. +++.+..+.... +...+..++++++|+.+++...++ .|.+||. +++.+..+..+.....
T Consensus       180 ~~~~----~~~i~~~~~-~g~~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~  252 (286)
T 1q7f_A          180 SDNR----AHCVKVFNY-EGQYLRQIGGEG-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQ  252 (286)
T ss_dssp             EEGG----GTEEEEEET-TCCEEEEESCTT-TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSC
T ss_pred             EECC----CCEEEEEcC-CCCEEEEEccCC-ccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCc
Confidence            6543    567999997 455555554321 124688999999998888877775 9999995 5667777665443334


Q ss_pred             CceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352          626 NPRICFNKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       626 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      +..++++|+|+++++ +.++.|++|+....
T Consensus       253 ~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          253 CFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             ceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            668999999986666 67999999998654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.63  E-value=1.3e-13  Score=152.07  Aligned_cols=274  Identities=10%  Similarity=0.030  Sum_probs=188.3

Q ss_pred             CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352          336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  415 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~  415 (1093)
                      ..|.+++|+|++.. ++..+.++.++.|   .++....                   +.++...+.+++|+|+|++++++
T Consensus         6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~   62 (333)
T 2dg1_A            6 QDLPTLFYSGKSNS-AVPIISESELQTI---TAEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD   62 (333)
T ss_dssp             CCCCBCCSCGGGGC-SSCCCCGGGSCEE---ECEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred             cccceeeecCCccc-eeEEeecccCccc---ccceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence            36889999999985 6666778899999   2333222                   44566778999999999988888


Q ss_pred             EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC----CcEEEEECCCCceeEEee--cCCCCe
Q 001352          416 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE--GHGAPV  489 (1093)
Q Consensus       416 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~--~h~~~v  489 (1093)
                      ..++.|.+||..+++...   ....+...+.+++|+++|+  ++++...+    +.|.+||..+++....+.  .+...+
T Consensus        63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  137 (333)
T 2dg1_A           63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI  137 (333)
T ss_dssp             TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred             CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence            888999999998875332   1224667899999999998  66666655    689999988887654443  244568


Q ss_pred             EEeeecccCCccEEEEEec------CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001352          490 YSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  563 (1093)
Q Consensus       490 ~~~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~  563 (1093)
                      ..+++.+  ++.++++...      .+.|..++........ +......+..++|+|+|+.++.+..   .++.|.+||.
T Consensus       138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~  211 (333)
T 2dg1_A          138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL  211 (333)
T ss_dssp             EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred             cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence            8888854  5666666543      2455555554433322 2222335788999999997766542   1456999998


Q ss_pred             CC-Ceeeeeee-----cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC----CCCCceEEEec
Q 001352          564 SE-GAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNK  633 (1093)
Q Consensus       564 ~~-~~~~~~~~-----~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~  633 (1093)
                      .+ +.....+.     ... ....+..++++++++.+++...++.|.+||. +++.+..+.....    ...+.+++|+|
T Consensus       212 ~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~  289 (333)
T 2dg1_A          212 EDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP  289 (333)
T ss_dssp             CTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred             cCCCcCcccccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC
Confidence            64 33322211     111 0135788999999988888778899999998 5666666654321    11478999999


Q ss_pred             CCCEEEEEECCC
Q 001352          634 NGTLLAVIANEN  645 (1093)
Q Consensus       634 ~~~~l~~~~~dg  645 (1093)
                      +++.|++++.++
T Consensus       290 dg~~L~v~~~~g  301 (333)
T 2dg1_A          290 GTNQLIICSNDI  301 (333)
T ss_dssp             TSCEEEEEEECG
T ss_pred             CCCEEEEEeCcc
Confidence            987777766653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=2.1e-13  Score=166.80  Aligned_cols=250  Identities=10%  Similarity=0.001  Sum_probs=174.9

Q ss_pred             CCCCCeEEEEECCCCCEEEEEEcCC-----EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCc--
Q 001352          395 DPGVSVNRVVWSPDGSLLGVAYSKH-----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--  467 (1093)
Q Consensus       395 ~h~~~V~~v~~s~dg~~las~~~d~-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--  467 (1093)
                      +|...+..++|||||++||.++.++     .|++||+.+++....  .+.  ...+..++|+|||+  .|+.++.++.  
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~--~~~~~~~~wspDg~--~l~~~~~~~~~~  195 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGK--GMFYNAYPQQDG  195 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSS--EEEEEECCCCSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--ccc--CcccceEEEEeCCC--EEEEEEECCccc
Confidence            4555789999999999999886543     899999999875432  222  22367899999999  5666666655  


Q ss_pred             --------------EEEEECCCCcee--EEee--cCCCCeEEeeecccCCccEEEEEec-----CCeEEEEEcCC-----
Q 001352          468 --------------IKVWDAVTGSRT--YSFE--GHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYDS-----  519 (1093)
Q Consensus       468 --------------i~vwd~~~~~~~--~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~-----  519 (1093)
                                    |++|++.+++..  ..+.  .|...+..+.|  ++||++|+..+.     +..|.+||+.+     
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~  273 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI  273 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence                          999999988632  2222  24555677777  557788887765     56899999986     


Q ss_pred             -CC-ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee--eeeeecccccCCCeEEEEEcCCCCEEE
Q 001352          520 -LG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQIL  595 (1093)
Q Consensus       520 -~~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~  595 (1093)
                       +. ....+..+...+.. .|+|+|+.|+..+........|.+||+.++..  .+.+..+. ....+..+.|++++..++
T Consensus       274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~  351 (710)
T 2xdw_A          274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVL  351 (710)
T ss_dssp             CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEE
T ss_pred             CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEE
Confidence             32 34444444444443 58899999888775443466899999988742  34444443 013577889987777777


Q ss_pred             EEeCCCc--EEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC----CCeEEEEEcCCCc
Q 001352          596 AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN  656 (1093)
Q Consensus       596 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~  656 (1093)
                      +...++.  |++|++.+++.+..+..+  ...+..++++|++..++....    .+++..||+.+++
T Consensus       352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            7888874  566787778877777655  334677889999877665432    4789999998765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=2.7e-09  Score=131.81  Aligned_cols=588  Identities=12%  Similarity=0.100  Sum_probs=337.7

Q ss_pred             CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352          336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  415 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~  415 (1093)
                      ..|.++.-.++|.  |-.|+.+| +..||-.+   ..     .+... .. ....  ..-....|.++...++|..|-+|
T Consensus        19 n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~---f~-----~~~~~-~~-~~~~--~~l~~n~I~~i~~d~~g~~lWig   83 (781)
T 3v9f_A           19 NYVLSITQDKQGF--LWFATEEG-LNKFDGTR---FI-----TYYKE-EQ-SSSV--QSITGNELNEVYTDPVQPVIWIA   83 (781)
T ss_dssp             SBEEEEEECTTSC--EEEEESSC-EEEECSSS---EE-----EECCC-SS-CSSS--CCCSCSCEEEEEECSSSSEEEEE
T ss_pred             CEeEEEEECCCCC--EEEccCCc-CccccCCc---eE-----EEEcC-CC-CCcc--ccccccccceEEEcCCCCEEEEE
Confidence            3899999999996  44455655 66677432   11     11100 00 0000  00023569999999888845567


Q ss_pred             EcCCEEEEEEccCCCcccceEEec-----c---ccccEEEEEeeC--CCCcEEEEEEcCCCcEEEEECCCCceeEEeec-
Q 001352          416 YSKHIVQLYAYHGGSDARQQLEID-----A---HVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-  484 (1093)
Q Consensus       416 ~~d~~i~iwd~~~~~~~~~~~~~~-----~---h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-  484 (1093)
                      +.++-+..||..+++..    .+.     .   ....|.++....  ++.   +..++.++.|..+|..+++... +.. 
T Consensus        84 t~~~Gl~~~d~~~~~f~----~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~-~~~~  155 (781)
T 3v9f_A           84 TQRAGLNAYNYETQSFS----VYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTH-YNKS  155 (781)
T ss_dssp             ESSSCEEEEETTTTEEE----EECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEE-ESTT
T ss_pred             eCCCCcceECCCCCeEE----eeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEe-eccC
Confidence            77734999998875421    121     0   123688888877  665   4445544558899987766433 221 


Q ss_pred             -----CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-------CCCCceEEEEEccCCCEEEEEecCC
Q 001352          485 -----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       485 -----h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                           ....|.++...  .++ .|..++.++-+..||..+........       .....|.++...++|.+.+...   
T Consensus       156 ~~~~l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~---  229 (781)
T 3v9f_A          156 TVPALPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS---  229 (781)
T ss_dssp             TCTTCSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET---
T ss_pred             cccCCCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC---
Confidence                 12446766553  233 45556766568888876654322111       1235688999888888776542   


Q ss_pred             CCceeEEEEeCCCCeeeeeeecc----cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe-------cC-
Q 001352          553 EGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-------AG-  620 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~-  620 (1093)
                        . -+.+||..+++........    ......|.++...++|. +..|+..+.|.++|..++.......       .. 
T Consensus       230 --~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~  305 (781)
T 3v9f_A          230 --K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGD  305 (781)
T ss_dssp             --T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCS
T ss_pred             --C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCC
Confidence              2 3899998877654322211    11235689998887764 5666765678999988765432221       10 


Q ss_pred             ----CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCC
Q 001352          621 ----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK  696 (1093)
Q Consensus       621 ----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s  696 (1093)
                          -....|.++...++|. |-+|+.++-|..++........ ...          .                      
T Consensus       306 ~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~----------~----------------------  351 (781)
T 3v9f_A          306 NNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSY----------S----------------------  351 (781)
T ss_dssp             STTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC----------------------------------
T ss_pred             CCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-ecc----------C----------------------
Confidence                0123467788888776 5566666677777765432111 000          0                      


Q ss_pred             CCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccc
Q 001352          697 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT  776 (1093)
Q Consensus       697 ~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~  776 (1093)
                      +..                            ..+.......|.++...++|. +..++.++.+..|+......       
T Consensus       352 ~~~----------------------------~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~-------  395 (781)
T 3v9f_A          352 PTQ----------------------------MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA-------  395 (781)
T ss_dssp             --C----------------------------CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE-------
T ss_pred             ccc----------------------------cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE-------
Confidence            000                            000000234578888888887 45555555566665432111       


Q ss_pred             cccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEEC--CCCCCeEEEEEcC
Q 001352          777 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNP  854 (1093)
Q Consensus       777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~  854 (1093)
                           ..+....           ......|.+++..++|.+.+...++.+..++..+++......  .....|.++...+
T Consensus       396 -----~~~~~~~-----------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~  459 (781)
T 3v9f_A          396 -----IYNKENR-----------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK  459 (781)
T ss_dssp             -----ECC----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT
T ss_pred             -----EEccCCC-----------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC
Confidence                 0010000           014567899999888887775556778899987775433221  2346789999887


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCcceeeecccc-----cCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeec
Q 001352          855 HDNNVIAIGMDDSTILIYNARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT  929 (1093)
Q Consensus       855 ~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h-----~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  929 (1093)
                       ++.+.+ |+. +-|..||..+++........     ...|.++...++|++.+.....| |..||..+++...   +..
T Consensus       460 -~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~  532 (781)
T 3v9f_A          460 -NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQ  532 (781)
T ss_dssp             -TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECT
T ss_pred             -CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccC
Confidence             665544 555 55889998876543322111     46799999999988776544355 7889887754322   221


Q ss_pred             CCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCC---CCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001352          930 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPISQATFSCDCRMVFTSFVDGTLSIH 1006 (1093)
Q Consensus       930 ~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h---~~~v~~~~fs~dg~~l~t~~~dg~v~vw 1006 (1093)
                      ..+-  ....|.++...++|.+.+++.+|-+..||..+++... +...+   ...|.++...++|.+.++ +..| |..+
T Consensus       533 ~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~  607 (781)
T 3v9f_A          533 YEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCY  607 (781)
T ss_dssp             TTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEE
T ss_pred             CCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEE
Confidence            1111  1246889999999998777664444889887765332 11111   346788999999987664 4555 7788


Q ss_pred             EcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352         1007 EASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus      1007 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
                      +..++... .+....-++..    ....-++..++ +| .|..|+.+| +..++..
T Consensus       608 ~~~~~~~~-~~~~~dGl~~~----~f~~~~~~~~~-~G-~l~~g~~~G-l~~f~p~  655 (781)
T 3v9f_A          608 ITSKKCFY-TYDHSNNIPQG----SFISGCVTKDH-NG-LIYFGSING-LCFFNPD  655 (781)
T ss_dssp             ETTTTEEE-EECGGGTCCSS----CEEEEEEEECT-TS-CEEEEETTE-EEEECSC
T ss_pred             ECCCCceE-EecccCCcccc----ccccCceEECC-CC-EEEEECCCc-eEEEChh
Confidence            88876543 34322222222    22223455665 34 466677777 5556643

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.60  E-value=1.3e-13  Score=168.75  Aligned_cols=250  Identities=10%  Similarity=-0.008  Sum_probs=173.1

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCC----cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      +|+..+..++|||||++|+.+.+.+|    .|++||+.+|+.+.. .                 +  +...+..++||||
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wspD  181 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHD  181 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTT
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEeC
Confidence            35557889999999997444444333    899999999987642 0                 1  1123667999999


Q ss_pred             CCEEEEEEcCCE----------------EEEEEccCCCcccce-EEeccccccEEEEEeeCCCCcEEEEEEcC-----CC
Q 001352          409 GSLLGVAYSKHI----------------VQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGD-----DK  466 (1093)
Q Consensus       409 g~~las~~~d~~----------------i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-----d~  466 (1093)
                      |+.|+.++.++.                |++|++.++...... .....|...+..++|||||+.  |+.++.     +.
T Consensus       182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~  259 (710)
T 2xdw_A          182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVN  259 (710)
T ss_dssp             SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCC
T ss_pred             CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCcc
Confidence            999999987765                999999887532111 112235666889999999995  444432     56


Q ss_pred             cEEEEECCC------Cc-eeEEeecCCCCeEEeeecccCCccEEEEEecC----CeEEEEEcCCCCc--eEEecCCC--C
Q 001352          467 TIKVWDAVT------GS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA--RVDYDAPG--L  531 (1093)
Q Consensus       467 ~i~vwd~~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~--~~~~~~~~--~  531 (1093)
                      .|.+||+.+      +. ....+..+...+... |++  +|..|+..+..    +.|.+||+.+...  ...+..+.  .
T Consensus       260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  336 (710)
T 2xdw_A          260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD  336 (710)
T ss_dssp             EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred             EEEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence            899999987      53 466676676666553 443  45555555443    3699999987642  23333333  3


Q ss_pred             ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe----CCCcEEEEE
Q 001352          532 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWD  607 (1093)
Q Consensus       532 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~----~dg~i~iwd  607 (1093)
                      .+..++|++++.++++...  ++...|++|++.+|+.++.+..+.   ..+..+.++|+++.++...    ..++++.||
T Consensus       337 ~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          337 VLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             EEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred             eEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC---ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence            6778899877777766654  335678899987887777776654   6788899999987776432    457899999


Q ss_pred             CCCCc
Q 001352          608 MNKVQ  612 (1093)
Q Consensus       608 ~~~~~  612 (1093)
                      +.+++
T Consensus       412 ~~tg~  416 (710)
T 2xdw_A          412 LTKEE  416 (710)
T ss_dssp             TTSSS
T ss_pred             CCCCc
Confidence            99887

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.60  E-value=3.9e-13  Score=149.17  Aligned_cols=285  Identities=11%  Similarity=0.039  Sum_probs=175.6

Q ss_pred             CeEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC---C--e
Q 001352          581 SVSVVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE---N--R  646 (1093)
Q Consensus       581 ~v~~v~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d---g--~  646 (1093)
                      .+....+  +|++++...         .++.|++||+.+++....       ..+..++|+|||++|+..+.+   +  .
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~   86 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSE   86 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence            4556666  788776642         256799999998875433       236889999999999987753   2  3


Q ss_pred             EEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccc
Q 001352          647 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  726 (1093)
Q Consensus       647 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~  726 (1093)
                      |.+|++.+++......                                                                
T Consensus        87 l~~~~~~~g~~~~l~~----------------------------------------------------------------  102 (347)
T 2gop_A           87 IWVADLETLSSKKILE----------------------------------------------------------------  102 (347)
T ss_dssp             EEEEETTTTEEEEEEE----------------------------------------------------------------
T ss_pred             EEEEECCCCceEEEEc----------------------------------------------------------------
Confidence            6666666542221110                                                                


Q ss_pred             cccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCe
Q 001352          727 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  806 (1093)
Q Consensus       727 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  806 (1093)
                             ... +..++|+|+|+.|+.++.+..       ..                     .            ....+
T Consensus       103 -------~~~-~~~~~wspdg~~l~~~~~~~~-------~~---------------------~------------~~~~~  134 (347)
T 2gop_A          103 -------AKN-IRSLEWNEDSRKLLIVGFKRR-------ED---------------------E------------DFIFE  134 (347)
T ss_dssp             -------ESE-EEEEEECTTSSEEEEEEECCC-------C----------------------------------------
T ss_pred             -------CCC-ccceeECCCCCEEEEEEccCC-------Cc---------------------C------------CcEEE
Confidence                   112 677889999988887765410       00                     0            00011


Q ss_pred             eEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC-------eEEEEEcCCcce
Q 001352          807 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-------TILIYNARSSEV  879 (1093)
Q Consensus       807 ~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-------~i~iwd~~~~~~  879 (1093)
                      ..+.|..+|.-+.......|.+||+.+++.+..+.. . .+..++|+| |+ +++++..++       ...||.+.+++.
T Consensus       135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~  210 (347)
T 2gop_A          135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKE  210 (347)
T ss_dssp             --CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred             cccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCce
Confidence            122233344333222346799999998887455544 3 788999999 78 777776542       344554445543


Q ss_pred             eeecccccCCeEEEEEeCCCCEEEEEeCCC--------cEEEEeCCCCceeeeeeeecCCCcccCCCCceE-EEEccCCC
Q 001352          880 ISKLEGHSKRVTGLVFSDALNILVSSGGDA--------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQT  950 (1093)
Q Consensus       880 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~dg~  950 (1093)
                       ..+..+ ..+..+  ||||++|+.++.++        .|.+||  +++     ......++..   .+.. ++|+ || 
T Consensus       211 -~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-----~~~l~~~~~~---~~~~~~~~s-dg-  274 (347)
T 2gop_A          211 -EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-----VMGILDEVDR---GVGQAKIKD-GK-  274 (347)
T ss_dssp             -EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-----EEESSTTCCS---EEEEEEEET-TE-
T ss_pred             -EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc-----eEeccccCCc---ccCCccEEc-Cc-
Confidence             444445 555554  99999998877543        577787  433     1222223222   4665 8999 88 


Q ss_pred             EEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcE-EEEEcCCCc
Q 001352          951 RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEASNLE 1012 (1093)
Q Consensus       951 ~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v-~vwd~~~~~ 1012 (1093)
                      ++++ ..++.++|| +.+++.. .+. .+...|.+++|+|  .++++++.++.. .+|.++ ++
T Consensus       275 ~~~~~~~~~~~~l~-~~~g~~~-~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          275 VYFTLFEEGSVNLY-IWDGEIK-PIA-KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             EEEEEEETTEEEEE-EESSSEE-EEE-CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred             EEEEEecCCcEEEE-EcCCceE-EEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence            6666 577899999 8766553 333 3477899999999  678888877765 888887 54

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.59  E-value=3.1e-13  Score=145.98  Aligned_cols=244  Identities=11%  Similarity=0.047  Sum_probs=174.1

Q ss_pred             hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352          331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  410 (1093)
Q Consensus       331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~  410 (1093)
                      +..+.....+++|+|+|+.+++++..++.|..||..++  ...                   +..+...+.+++++|+|+
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~dg~   81 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQGH   81 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTTCC
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCCCc
Confidence            44455678899999999877889999999999999887  322                   334667899999999999


Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEecc-ccccEEEEEeeCCCCcEEEEE----Ec-------------CCCcEEEEE
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVIT----CG-------------DDKTIKVWD  472 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s----~~-------------~d~~i~vwd  472 (1093)
                      ++++...++.|.+||..+++.........+ ....+..++++|+|+  ++++    |+             ..+.|..++
T Consensus        82 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~  159 (296)
T 3e5z_A           82 LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA  159 (296)
T ss_dssp             EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred             EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEEC
Confidence            888877778999999988764321111111 123567899999998  6776    32             134555566


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC-CCCc---eEEecCCCCceEEEEEccCCCEEEEE
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGA---RVDYDAPGLGCTRMAYSANGRRLFSC  548 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~---~~~~~~~~~~v~~~~~s~d~~~l~~~  548 (1093)
                      .. ++ +..+..+......++|+  +++..+++.+.++.|.+|++. .+..   ...+......+..++++++|++.++.
T Consensus       160 ~~-g~-~~~~~~~~~~~~gi~~s--~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          160 PD-GT-LSAPIRDRVKPNGLAFL--PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             TT-SC-EEEEECCCSSEEEEEEC--TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred             CC-CC-EEEeecCCCCCccEEEC--CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence            44 44 44455566677888885  466677777888999999997 3332   22333344456789999999977665


Q ss_pred             ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEE-cCCCCEEEEEeCCCcEEEEECCCCce
Q 001352          549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQL  613 (1093)
Q Consensus       549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~-~~~~~~l~~~~~dg~i~iwd~~~~~~  613 (1093)
                            .+.|.+||.. ++.+..+..+.   . +.+++| +|+++.|++++.+ .+..++..+.++
T Consensus       236 ------~~~v~~~~~~-g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          236 ------GDGVHVLTPD-GDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             ------TTEEEEECTT-SCEEEEEECSS---C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred             ------CCeEEEECCC-CCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence                  2349999986 77777777665   4 888999 6888989988875 466667766554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.58  E-value=4.1e-13  Score=145.56  Aligned_cols=291  Identities=14%  Similarity=0.120  Sum_probs=196.7

Q ss_pred             CceeeeecCCCceEEEEEcc----CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  412 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l  412 (1093)
                      ........||+++++++-..    ++.|.+.|..+++.+....                   ....+ . +++||||++|
T Consensus        34 ~~~~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~-------------------vG~~P-~-va~spDG~~l   92 (386)
T 3sjl_D           34 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-------------------GGFLP-N-PVVADDGSFI   92 (386)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-------------------ECSSC-E-EEECTTSSCE
T ss_pred             cceeeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE-------------------CCCCC-c-EEECCCCCEE
Confidence            33456778999986666554    6899999999999886522                   12233 4 9999999999


Q ss_pred             EEEE----------cCCEEEEEEccCCCcccceEEecc-----ccccEEEEEeeCCCCcEEEEEEc--CCCcEEEEECCC
Q 001352          413 GVAY----------SKHIVQLYAYHGGSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVT  475 (1093)
Q Consensus       413 as~~----------~d~~i~iwd~~~~~~~~~~~~~~~-----h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~  475 (1093)
                      +++.          .++.|.+||..+++.+..+. +..     ....-..++|+|||++  ++.+.  .++.|.++|+.+
T Consensus        93 yVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t  169 (386)
T 3sjl_D           93 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEG  169 (386)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTT
T ss_pred             EEEcccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCC
Confidence            8875          35789999999987665432 211     0123457899999995  44443  478999999999


Q ss_pred             CceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCC----CCce-EEEEEc-cCCCEEEEE
Q 001352          476 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAP----GLGC-TRMAYS-ANGRRLFSC  548 (1093)
Q Consensus       476 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~----~~~v-~~~~~s-~d~~~l~~~  548 (1093)
                      ++.+.++.....  .  .+.|. ....+++.+.||.+.+.++.. ++........    ...+ ....|. ++|++++..
T Consensus       170 ~~vv~tI~v~g~--~--~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs  244 (386)
T 3sjl_D          170 KAFKRMLDVPDC--Y--HIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPT  244 (386)
T ss_dssp             TEEEEEEECCSE--E--EEEEE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEB
T ss_pred             CcEEEEEECCCc--c--eeecC-CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEe
Confidence            999998853221  1  11222 234677888899999998876 3332211111    1122 124554 678666543


Q ss_pred             ecCCCCceeEEEEeCCCCe--eeeeeecc-------cccCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECC
Q 001352          549 GTSKEGESFLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMN  609 (1093)
Q Consensus       549 ~~~~~~~~~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~v~~~~~~~~l~~~~~----------dg~i~iwd~~  609 (1093)
                      .     .+.|++.|..++.  ....+.-.       .........++++++++.++....          .+.|.+.|+.
T Consensus       245 ~-----~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~  319 (386)
T 3sjl_D          245 Y-----TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK  319 (386)
T ss_dssp             T-----TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             C-----CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC
Confidence            3     4569999987654  33333200       000123345777999999888643          2579999999


Q ss_pred             CCceEEEEecCCCCCCCceEEEecCCC-EEEEEE-CCCeEEEEEcCCCceeeecccc
Q 001352          610 KVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAAGVL  664 (1093)
Q Consensus       610 ~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~  664 (1093)
                      +++.+..+....   .+..+++++|++ +|++.. .++.|.++|..+++.+..+...
T Consensus       320 t~kv~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~  373 (386)
T 3sjl_D          320 TGERLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  373 (386)
T ss_dssp             TCCEEEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             CCeEEEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence            999999988653   368999999997 666654 4899999999999888777643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.57  E-value=2.6e-13  Score=165.52  Aligned_cols=290  Identities=12%  Similarity=0.008  Sum_probs=183.3

Q ss_pred             eeeecCCCceEEEEEccCC--cEEEEe--cCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352          340 SMDFHPVQHTLLLVGTNVG--DTGLWD--VNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  415 (1093)
Q Consensus       340 ~~~~spdg~~llasg~~dg--~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~  415 (1093)
                      .-..+|||++++.+....+  .-.||-  ..+++....     .|.+        ....+|...+..++|||||++||.+
T Consensus        72 ~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l-----~d~~--------~~a~~~~~~~~~~~~SPDG~~la~~  138 (695)
T 2bkl_A           72 VSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVL-----LDPN--------GWSKDGTVSLGTWAVSWDGKKVAFA  138 (695)
T ss_dssp             ECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEE-----ECGG--------GSSSSSCEEEEEEEECTTSSEEEEE
T ss_pred             CCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEE-----EchH--------HhccCCCEEEEEEEECCCCCEEEEE
Confidence            3344599997555544333  344454  444432211     1110        0123566689999999999999954


Q ss_pred             -----EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCc-------------EEEEECCCCc
Q 001352          416 -----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-------------IKVWDAVTGS  477 (1093)
Q Consensus       416 -----~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~-------------i~vwd~~~~~  477 (1093)
                           +.+.+|++||+.+++.+... .+...  ....++|+|||+  .|+.++.|..             |++|++.++.
T Consensus       139 ~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~--~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~  213 (695)
T 2bkl_A          139 QKPNAADEAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSK--GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP  213 (695)
T ss_dssp             EEETTCSCCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSS--EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCG
T ss_pred             ECCCCCceEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCC--EEEEEEecCCCCCccccCCCCCEEEEEECCCCc
Confidence                 33468999999998754110 12111  126799999999  6777777665             9999999886


Q ss_pred             ----eeEEeecCCCCeEEeeecccCCccEEEEEecCC----eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001352          478 ----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  549 (1093)
Q Consensus       478 ----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~  549 (1093)
                          ++.....|...+..+.|  ++||++|+.++.++    .|.+|+..++. ...+..+...+....+ ++|. ++..+
T Consensus       214 ~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s  288 (695)
T 2bkl_A          214 SKDTVVHERTGDPTTFLQSDL--SRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLT  288 (695)
T ss_dssp             GGCEEEECCCCCTTCEEEEEE--CTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEE
T ss_pred             hhceEEEecCCCCEEEEEEEE--CCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEE
Confidence                33333345567778877  45677887777665    56666554443 3333334444555555 6777 65555


Q ss_pred             cCCCCceeEEEEeCCCCee---eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceEEEEecCCCCCC
Q 001352          550 TSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPE  625 (1093)
Q Consensus       550 ~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~  625 (1093)
                      .....+..|++||+.++..   ...+..+.  ...+..++++ ++..+++...|+..++|.+. +++....+..+. ...
T Consensus       289 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~  364 (695)
T 2bkl_A          289 DEGAPRQRVFEVDPAKPARASWKEIVPEDS--SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPG-VGA  364 (695)
T ss_dssp             CTTCTTCEEEEEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSS-SSE
T ss_pred             CCCCCCCEEEEEeCCCCCccCCeEEecCCC--CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCC-CeE
Confidence            4333467899999988753   33333321  2457788888 56677778889988888655 455555554432 234


Q ss_pred             CceEEEecCCCEEEEEEC----CCeEEEEEcCCCc
Q 001352          626 NPRICFNKNGTLLAVIAN----ENRIKILETPESN  656 (1093)
Q Consensus       626 v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~  656 (1093)
                      +..++++|++..++....    .++|++||+.+++
T Consensus       365 v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          365 ASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             ECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            667888999987775443    4789999998765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.57  E-value=7.3e-13  Score=144.92  Aligned_cols=277  Identities=10%  Similarity=-0.016  Sum_probs=190.1

Q ss_pred             CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceE
Q 001352          357 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL  436 (1093)
Q Consensus       357 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~  436 (1093)
                      +++|.+||.++++........   .    .      -.........+++. +++..++...++.|.+||..+++.+.   
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~---~----n------~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~---   78 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYR---A----N------GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG---   78 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHH---H----H------SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE---
T ss_pred             CceEEEEECCCCEEhhhhHhh---h----c------CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE---
Confidence            789999999999865421000   0    0      00122446777774 45555556667899999999987655   


Q ss_pred             EeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC-----CCeEEeeecccCCccEEEEEe-cCC
Q 001352          437 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-----APVYSLCPHAKENIHFIFSIS-VDG  510 (1093)
Q Consensus       437 ~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~~-~dg  510 (1093)
                      ++. .......++++++++  ++++...++.|.+||..+++....+....     .....+++  . ++.++++.. .++
T Consensus        79 ~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~~  152 (328)
T 3dsm_A           79 RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQN  152 (328)
T ss_dssp             EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTCC
T ss_pred             EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCCC
Confidence            333 345688999999985  56666578999999999999887776433     13455665  2 334444443 489


Q ss_pred             eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC------ceeEEEEeCCCCeeeeeeecccccCCCeEE
Q 001352          511 KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVSV  584 (1093)
Q Consensus       511 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  584 (1093)
                      .|.++|+.+.+....+... .....++++|+|++++++......      .+.|.++|..+++....+....  ......
T Consensus       153 ~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~  229 (328)
T 3dsm_A          153 RILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSE  229 (328)
T ss_dssp             EEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEE
T ss_pred             EEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCcee
Confidence            9999999988776666543 345678999999977766432100      2679999999998877765432  236889


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec-CCCEEEEE----ECCCeEEEEEcCCCceee
Q 001352          585 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVI----ANENRIKILETPESNSVD  659 (1093)
Q Consensus       585 v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~----~~dg~i~iw~~~~~~~~~  659 (1093)
                      ++++|++++++++..  .|.+||..+++................++++| ++.++++.    ..++.|.+|+.. ++.+.
T Consensus       230 la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~  306 (328)
T 3dsm_A          230 VQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID  306 (328)
T ss_dssp             EEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred             EEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEE
Confidence            999999999888765  89999999887642111111123467899999 55555555    568999999998 76666


Q ss_pred             ecc
Q 001352          660 AAG  662 (1093)
Q Consensus       660 ~~~  662 (1093)
                      .+.
T Consensus       307 ~i~  309 (328)
T 3dsm_A          307 EFY  309 (328)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.57  E-value=9.7e-12  Score=137.60  Aligned_cols=203  Identities=10%  Similarity=0.012  Sum_probs=141.2

Q ss_pred             eEEEEccCCCEEEEEe---CCeEEEEEccCceeEEE-ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeee
Q 001352          807 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK  882 (1093)
Q Consensus       807 ~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~  882 (1093)
                      ..++++|||++|+++.   ++.|.++| .+++.+.. +....    ++.+.|.+.+.+++.+.||.+.+++. +++....
T Consensus       128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~  201 (373)
T 2mad_H          128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA  201 (373)
T ss_pred             cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence            3678999999988875   36799999 99988877 65322    24555645567777888999999999 8876633


Q ss_pred             cc-----cccCC-eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCC----cccCCCCceEEEEccCCCEE
Q 001352          883 LE-----GHSKR-VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG----VMTLAPSETHIQFHKDQTRF  952 (1093)
Q Consensus       883 l~-----~h~~~-V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~dg~~l  952 (1093)
                      ..     ....+ .....+++++..++..+..+.+.+.|+.+........+.....    ..........++++||++.+
T Consensus       202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l  281 (373)
T 2mad_H          202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI  281 (373)
T ss_pred             EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence            21     11122 2335677777665555678899999997653222112211110    00001224458899999988


Q ss_pred             EEEe-----------CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEEcCCCceEEEe
Q 001352          953 LLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1017 (1093)
Q Consensus       953 ~~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~-~l~t~~-~dg~v~vwd~~~~~~~~~~ 1017 (1093)
                      .+..           ++.|.++|+.+++.+..+..+  ....+++|+|||+ +++++. .++.|.+||+.+++.++++
T Consensus       282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            8742           257999999999998887544  3688999999999 777776 4899999999999999774

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.57  E-value=2.6e-12  Score=139.30  Aligned_cols=204  Identities=13%  Similarity=0.073  Sum_probs=142.9

Q ss_pred             eeEEEEccCCCEEEEEe---CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-cceee
Q 001352          806 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS  881 (1093)
Q Consensus       806 v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~-~~~~~  881 (1093)
                      ...++|+|||+++.++.   ++.|.++|+.+++.+.++.....   ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus       139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~  214 (386)
T 3sjl_D          139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI  214 (386)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred             CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence            34678999999888775   47899999999999998864321   233433 667777888899999999876 55432


Q ss_pred             ecccc----cCCeE-EEEEe-CCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecC------CCcccCCCCceEEEEccCC
Q 001352          882 KLEGH----SKRVT-GLVFS-DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHKDQ  949 (1093)
Q Consensus       882 ~l~~h----~~~V~-~l~~s-~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~dg  949 (1093)
                      ....+    ..++. ...|. ++|+++. .+.+|.|.+.|+.++.......+...      .+-..  +....+++++++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~  291 (386)
T 3sjl_D          215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRAL  291 (386)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTT
T ss_pred             eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCC
Confidence            11111    12222 24664 6775554 56689999999987643222222211      11111  245568899999


Q ss_pred             CEEEEEe-----------CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCC-EEEEE-eCCCcEEEEEcCCCceEEE
Q 001352          950 TRFLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTS-FVDGTLSIHEASNLEVQCR 1016 (1093)
Q Consensus       950 ~~l~~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~-~l~t~-~~dg~v~vwd~~~~~~~~~ 1016 (1093)
                      +.+.+..           .+.|.+.|+.+++.+..+..++  ++.+++||+|++ +|+++ ..++.|.++|..+++.+.+
T Consensus       292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~  369 (386)
T 3sjl_D          292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS  369 (386)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            9988842           2479999999999999877654  688999999997 66664 4589999999999999988


Q ss_pred             ec
Q 001352         1017 IL 1018 (1093)
Q Consensus      1017 ~~ 1018 (1093)
                      +.
T Consensus       370 i~  371 (386)
T 3sjl_D          370 VN  371 (386)
T ss_dssp             EC
T ss_pred             ec
Confidence            86

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.57  E-value=1.5e-12  Score=137.64  Aligned_cols=245  Identities=12%  Similarity=0.104  Sum_probs=179.2

Q ss_pred             EEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCC-CCeEEEEECCCCCEEEEEEcCCEEEEEEccC
Q 001352          350 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG  428 (1093)
Q Consensus       350 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~s~dg~~las~~~d~~i~iwd~~~  428 (1093)
                      +|++++.++.|.+||.++|+.+..                   +..+. ..+.+++++|+|++|+  +.++.|..||. +
T Consensus         7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~   64 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D   64 (276)
T ss_dssp             EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred             EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence            689999999999999999998865                   22343 4788999999999998  35778999999 7


Q ss_pred             CCcccceEEeccc-cccEEEEEeeCCCCcEEEEEEcC-CCcEEEEECCCCceeEEeecC------CCCeEEeeecccCCc
Q 001352          429 GSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENI  500 (1093)
Q Consensus       429 ~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~  500 (1093)
                      |+.+.   .+..+ ...+.++.+.+||+  ++++.+. ++.|..+|. +|+.+.++...      ......+++  .++|
T Consensus        65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G  136 (276)
T 3no2_A           65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG  136 (276)
T ss_dssp             SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred             CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence            76555   34433 34788999999999  7777776 778888884 88888776421      122333333  5678


Q ss_pred             cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccccc--
Q 001352          501 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ--  578 (1093)
Q Consensus       501 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--  578 (1093)
                      .++++...++.|.+||.+ ++.+..+.... ...++.+.++|+.++++..    .+.|..+|..+|+.+..+......  
T Consensus       137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~  210 (276)
T 3no2_A          137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV  210 (276)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred             CEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence            899999999999999988 88888776653 4556788899999988764    457999999999998888754311  


Q ss_pred             -CCCeEEEEEcCCCCEEEEEeCC--------CcEEEEEC-CCCceEEEEecCCCCCCCceEE
Q 001352          579 -HNSVSVVHFDTAKDQILAAGDD--------HVIKIWDM-NKVQLLTTIDAGGGLPENPRIC  630 (1093)
Q Consensus       579 -~~~v~~v~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~  630 (1093)
                       ...+..+...++|+.+++....        +..+++.+ .+|+.+..+........+..++
T Consensus       211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~  272 (276)
T 3no2_A          211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC  272 (276)
T ss_dssp             CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred             cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence             1237788889999888776421        23345555 4677777776655555555543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=1.2e-11  Score=136.78  Aligned_cols=281  Identities=12%  Similarity=0.011  Sum_probs=186.4

Q ss_pred             eecCCCceEEEEEc-cCC---cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE-
Q 001352          342 DFHPVQHTLLLVGT-NVG---DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-  416 (1093)
Q Consensus       342 ~~spdg~~llasg~-~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~-  416 (1093)
                      ...|++++++++-. ...   +|.++|..+++.+..                   +.....+  .++|||||++|+++. 
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~   85 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST   85 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence            45578876444432 233   889999999987654                   2222233  899999999999885 


Q ss_pred             ---------cCCEEEEEEccCCCcccceEEec--cc---cccEEEEEeeCCCCcEEEEEEc--CCCcEEEEECCCCceeE
Q 001352          417 ---------SKHIVQLYAYHGGSDARQQLEID--AH---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTY  480 (1093)
Q Consensus       417 ---------~d~~i~iwd~~~~~~~~~~~~~~--~h---~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~  480 (1093)
                               .++.|.+||..+.+.+..+. +.  .+   ...-..++|+|||++  |+.+.  .++.|.++| .+++.+.
T Consensus        86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~~--l~v~n~~~~~~v~viD-~t~~~~~  161 (373)
T 2mad_H           86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNAD--LLFFQFAAGPAVGLVV-QGGSSDD  161 (373)
T ss_pred             cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCCE--EEEEecCCCCeEEEEE-CCCCEEe
Confidence                     36789999999876554321 11  00   123457899999994  55544  357899999 9999888


Q ss_pred             E-eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-----CCCCc-eEEEEEccCCCEEEEEecCCC
Q 001352          481 S-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLG-CTRMAYSANGRRLFSCGTSKE  553 (1093)
Q Consensus       481 ~-~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~-v~~~~~s~d~~~l~~~~~~~~  553 (1093)
                      + +... ..   +.+.+... ..+++.+.||.+.++|. +++......     ....+ .....+.+++..++..+.   
T Consensus       162 ~~i~~~-~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---  232 (373)
T 2mad_H          162 QLLSSP-TC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---  232 (373)
T ss_pred             EEcCCC-ce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence            7 6432 21   23333332 45677788999999999 665542221     11112 233456777665554443   


Q ss_pred             CceeEEEEeCCCCe--eeeeeeccc-------ccCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceE
Q 001352          554 GESFLVEWNESEGA--IKRTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLL  614 (1093)
Q Consensus       554 ~~~~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~v~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~  614 (1093)
                       .+.+.+.|..++.  .+..+....       ........+.++|+++.++++..          .+.|.++|..+++.+
T Consensus       233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv  311 (373)
T 2mad_H          233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS  311 (373)
T ss_pred             -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence             4468888987553  222221100       00122445789999998888653          357999999999999


Q ss_pred             EEEecCCCCCCCceEEEecCCC-EEEEEE-CCCeEEEEEcCCCceeee
Q 001352          615 TTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDA  660 (1093)
Q Consensus       615 ~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~  660 (1093)
                      ..+....   ....++|+|||+ +++++. .++.|.++|..+.+.+..
T Consensus       312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            9997653   368999999999 777776 489999999999887766

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.56  E-value=1.8e-11  Score=132.27  Aligned_cols=283  Identities=10%  Similarity=0.053  Sum_probs=193.6

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  412 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l  412 (1093)
                      .+...+.+++++|+|+ +.++...++.|.+||.. ++.... .                 ...+...+.+++++++|.+.
T Consensus        12 ~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~l~   71 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY-P-----------------LPTPDAKVMCLTISSDGEVW   71 (299)
T ss_dssp             SSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE-E-----------------CSSTTCCEEEEEECTTSCEE
T ss_pred             CcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe-c-----------------CCcccCceeeEEECCCCCEE
Confidence            3445899999999998 56665567899999988 553321 0                 22345789999999999988


Q ss_pred             EEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE-eecCCCCeEE
Q 001352          413 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYS  491 (1093)
Q Consensus       413 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~h~~~v~~  491 (1093)
                      ++...++.|..||.. ++ ... ..+......+..+++.++|.  ++++...++.|.+||. +++.... ...+...+..
T Consensus        72 v~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~  145 (299)
T 2z2n_A           72 FTENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSF  145 (299)
T ss_dssp             EEETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred             EeCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCce
Confidence            887778889999986 33 221 12223456789999999998  6777777889999998 6654432 2334456788


Q ss_pred             eeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352          492 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  570 (1093)
Q Consensus       492 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~  570 (1093)
                      +++.  +++.+.++...++.|..||. +++.... .......+..++++++|+..++...    .+.|..||. +++...
T Consensus       146 i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~  217 (299)
T 2z2n_A          146 ITLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEITE  217 (299)
T ss_dssp             EEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEE
T ss_pred             EEEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcEEE
Confidence            8874  45667777767889999998 4443322 3334456889999999986665432    456999998 666433


Q ss_pred             eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001352          571 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  650 (1093)
Q Consensus       571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  650 (1093)
                       +.... ....+..++++++|+.+++...++.|.+||. +++ +..+........+.++++ ++|++.++.. .+.+..+
T Consensus       218 -~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~  291 (299)
T 2z2n_A          218 -FKIPT-PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKL  291 (299)
T ss_dssp             -EECSS-TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEE
T ss_pred             -EECCC-CCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEE
Confidence             32211 1356889999999886666657889999998 454 334433333345788999 8887666554 5677777


Q ss_pred             EcCCC
Q 001352          651 ETPES  655 (1093)
Q Consensus       651 ~~~~~  655 (1093)
                      +..+.
T Consensus       292 ~~~~~  296 (299)
T 2z2n_A          292 TLIKD  296 (299)
T ss_dssp             EEC--
T ss_pred             EcCcc
Confidence            76643

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.55  E-value=9.3e-13  Score=145.09  Aligned_cols=261  Identities=10%  Similarity=0.053  Sum_probs=182.5

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352          398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  477 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  477 (1093)
                      ..|.+++|++++..++..+.++.++.|.   ++   ....+..+...+.+++|+++|+  +++++..++.|.+||..+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~   77 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT---AE---PWLEISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKE   77 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CE---EEEEEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCC
T ss_pred             cccceeeecCCccceeEEeecccCcccc---cc---eeEEEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCc
Confidence            4577889999988888777888889992   22   2224556777789999999998  77788889999999999888


Q ss_pred             eeEEeecCCCCeEEeeecccCCccEEEEEecC----CeEEEEEcCCCCceEEec--CCCCceEEEEEccCCCEEEEEecC
Q 001352          478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTS  551 (1093)
Q Consensus       478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~~  551 (1093)
                      .......+...+.+++++  +++.++++...+    +.|.+||.++......+.  .....+..++++|+|+.+++....
T Consensus        78 ~~~~~~~~~~~~~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  155 (333)
T 2dg1_A           78 IKRPFVSHKANPAAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG  155 (333)
T ss_dssp             EEEEEECSSSSEEEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred             EEEEeeCCCCCcceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence            766554567789999885  456677777666    689999988776553332  234578899999999887765421


Q ss_pred             --CCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCC-CceEEEE------ecCC
Q 001352          552 --KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK-VQLLTTI------DAGG  621 (1093)
Q Consensus       552 --~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~~-~~~~~~~------~~~~  621 (1093)
                        .+..+.|+.+|..+++....... .   ..+..++|+|+++.++. .+.++.|++||..+ +..+..+      ....
T Consensus       156 ~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~  231 (333)
T 2dg1_A          156 YSTNPLGGVYYVSPDFRTVTPIIQN-I---SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG  231 (333)
T ss_dssp             BTTBCCEEEEEECTTSCCEEEEEEE-E---SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred             cccCCCceEEEEeCCCCEEEEeecC-C---CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence              11245688888776655433322 2   45788999999986655 45678999999964 3332211      1111


Q ss_pred             CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccc------cceeeeec
Q 001352          622 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD------NLRKLSVN  674 (1093)
Q Consensus       622 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~i~~~~~~  674 (1093)
                      . ..+..++++++|+++++...++.|.+|+.. ++.+..+..+..      .+.+++++
T Consensus       232 ~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~  288 (333)
T 2dg1_A          232 H-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFI  288 (333)
T ss_dssp             S-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred             C-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEEC
Confidence            1 246789999999988888888999999984 545544433322      35555554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.55  E-value=1.2e-12  Score=143.11  Aligned_cols=272  Identities=8%  Similarity=0.032  Sum_probs=184.0

Q ss_pred             ccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCC
Q 001352          707 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP  786 (1093)
Q Consensus       707 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~  786 (1093)
                      .++++.++|..+.+....................+++. +++..++...++.+.+||..                     
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~---------------------   72 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDIN---------------------   72 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETT---------------------
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECc---------------------
Confidence            36788888876543322111000011122345667774 45555555566888887644                     


Q ss_pred             CCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE-eCCeEEEEEccCceeEEEECCCC-----CCeEEEEEcCCCCCEE
Q 001352          787 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPS-----PTATSLAFNPHDNNVI  860 (1093)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~s~~d~~~l  860 (1093)
                       +++.+....     .......++++++++.+++. .++.|.+||..+++....+....     .....+++ . +++++
T Consensus        73 -t~~~~~~i~-----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly  144 (328)
T 3dsm_A           73 -TFKEVGRIT-----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY  144 (328)
T ss_dssp             -TCCEEEEEE-----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred             -ccEEEEEcC-----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence             333233321     23567889999999655555 37999999999999887776433     14556777 4 66666


Q ss_pred             EEEe-CCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCC----------CcEEEEeCCCCceeeeeeeec
Q 001352          861 AIGM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----------AQIFVWDVDGWGIQTCRSLQT  929 (1093)
Q Consensus       861 asg~-~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~~  929 (1093)
                      ++.. .++.|.++|+.+++.+..+... .....++++|+|++++++..+          +.|.++|..+++...  .+..
T Consensus       145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~  221 (328)
T 3dsm_A          145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF  221 (328)
T ss_dssp             EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred             EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence            6554 4889999999999888777643 345789999999988877655          789999998876433  2222


Q ss_pred             CCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeee-eecCCCCCEEEEEEcc-CCCEEEEE----eCCCcE
Q 001352          930 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ-WFPISSVPISQATFSC-DCRMVFTS----FVDGTL 1003 (1093)
Q Consensus       930 ~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~-~~~~h~~~v~~~~fs~-dg~~l~t~----~~dg~v 1003 (1093)
                      ..+     .....++|+||++.|.++.. .|.+||..+++.... +...+......++++| ++.++++.    ..++.|
T Consensus       222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V  295 (328)
T 3dsm_A          222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV  295 (328)
T ss_dssp             CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred             CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence            222     14789999999999988655 999999998876432 1222246789999999 55566665    568899


Q ss_pred             EEEEcCCCceEEEec
Q 001352         1004 SIHEASNLEVQCRIL 1018 (1093)
Q Consensus      1004 ~vwd~~~~~~~~~~~ 1018 (1093)
                      .+||.. |+.+.++.
T Consensus       296 ~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          296 YRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EEECTT-CCEEEEEE
T ss_pred             EEECCC-CCEEEEEE
Confidence            999998 88888876

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.55  E-value=1.3e-12  Score=138.33  Aligned_cols=247  Identities=8%  Similarity=-0.004  Sum_probs=177.0

Q ss_pred             CCCEEEEEe-CCeEEEEEccCceeEEEECCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccc-cCCe
Q 001352          814 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRV  890 (1093)
Q Consensus       814 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h-~~~V  890 (1093)
                      .+++|++++ ++.|.+||.++|+.+.++..+. ..+.+++++| ++++++  +.++.|..||. +|+.+..+..+ ...+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            456777776 6999999999999999998766 5789999999 898888  45788999999 89999988865 3478


Q ss_pred             EEEEEeCCCCEEEEEeC-CCcEEEEeCCCCceeeeeeeecC-CCcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCC
Q 001352          891 TGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE  967 (1093)
Q Consensus       891 ~~l~~s~dg~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~  967 (1093)
                      .++.+.+||+++++.+. ++.|..+|.+ ++......+... .+...   ....+++.++|+++++. .++.|..||.. 
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~---~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-  154 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHA---QFRQINKNKKGNYLVPLFATSEVREIAPN-  154 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGG---SCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccc---cccCceECCCCCEEEEecCCCEEEEECCC-
Confidence            89999999999999887 7778777764 343222222111 11111   35567889999999985 67899999998 


Q ss_pred             cceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEE
Q 001352          968 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1047 (1093)
Q Consensus       968 ~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l 1047 (1093)
                      |+.+.++..+  ..+.++.+.++|.++++++.+++|..+|..+|+.+.++..... +..   .-..+..++..+ +++.+
T Consensus       155 G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~---~l~~~~~~~~~~-~G~i~  227 (276)
T 3no2_A          155 GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-EGV---QLFFVAQLFPLQ-NGGLY  227 (276)
T ss_dssp             SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-BSC---CCSEEEEEEECT-TSCEE
T ss_pred             CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-CCc---cccccccceEcC-CCCEE
Confidence            9888775532  3556778899999999988888999999999999988873221 111   112344566676 57777


Q ss_pred             EEEeCC--------CcEEEEecC-CCCCCcccCCCccc
Q 001352         1048 AVGLTN--------GEVYVIEPN-EPGDTWAVLPPDEI 1076 (1093)
Q Consensus      1048 ~~~~~d--------g~v~~w~~~-~~~~~~~~~~~~~~ 1076 (1093)
                      ++....        +..+++++. +.+..|......+.
T Consensus       228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~  265 (276)
T 3no2_A          228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKF  265 (276)
T ss_dssp             EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTS
T ss_pred             EEeccCccccccccCCceEEEECCCCCEEEEecCcccc
Confidence            776422        234566663 33344655444444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.54  E-value=2.7e-12  Score=138.58  Aligned_cols=238  Identities=11%  Similarity=0.056  Sum_probs=168.9

Q ss_pred             ecCCCCCeEEEEECCCCC-EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  471 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  471 (1093)
                      +..+.....+++|+|+|+ +++++..++.|..||..++  ..   .+..+...+.+++++++|+  ++++...++.|.+|
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~   95 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ   95 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence            344566788999999998 7778888899999999886  33   4556777899999999998  67777777899999


Q ss_pred             ECCCCceeEEeecC----CCCeEEeeecccCCccEEEEEec-----------------CCeEEEEEcCCCCceEEecCCC
Q 001352          472 DAVTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLYDSLGARVDYDAPG  530 (1093)
Q Consensus       472 d~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~vwd~~~~~~~~~~~~~~  530 (1093)
                      |..+|+........    ...++.+++.  ++|.++++.+.                 .+.|..++..  .....+....
T Consensus        96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~  171 (296)
T 3e5z_A           96 REPGGEWESIADSFEGKKLNSPNDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR  171 (296)
T ss_dssp             CSTTCCEEEEECEETTEECCCCCCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred             cCCCCcEEEEeeccCCCCCCCCCCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence            99888765443221    1245567774  46777776321                 2345555443  4444444555


Q ss_pred             CceEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCee---eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001352          531 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW  606 (1093)
Q Consensus       531 ~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iw  606 (1093)
                      .....++|+|+|+.+++...    .+.|++|++. ++..   ...+..   ....+..++++++|+.+++.  ++.|.+|
T Consensus       172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~  242 (296)
T 3e5z_A          172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHFTV---EPGKTDGLRVDAGGLIWASA--GDGVHVL  242 (296)
T ss_dssp             SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEECC---SSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred             CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEeeC---CCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence            66789999999999844432    5579999986 5554   333321   23566789999999866555  8899999


Q ss_pred             ECCCCceEEEEecCCCCCCCceEEE-ecCCCEEEEEECCCeEEEEEcCCC
Q 001352          607 DMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       607 d~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      |.. ++.+..+..+..   +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus       243 ~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~  287 (296)
T 3e5z_A          243 TPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR  287 (296)
T ss_dssp             CTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred             CCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence            986 777777765533   789999 5899999998876 4555555544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.54  E-value=1.4e-08  Score=125.50  Aligned_cols=537  Identities=11%  Similarity=0.048  Sum_probs=310.9

Q ss_pred             CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC--CCCEEE
Q 001352          336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLG  413 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--dg~~la  413 (1093)
                      ..|.++...++|.. |-.|+.++.+..||..+++.... ...   ..      ..  ..-....|.++....  +|.+ .
T Consensus        66 n~I~~i~~d~~g~~-lWigt~~~Gl~~~d~~~~~f~~~-~~~---~~------~~--~~l~~~~i~~i~~d~~~~g~l-w  131 (781)
T 3v9f_A           66 NELNEVYTDPVQPV-IWIATQRAGLNAYNYETQSFSVY-QYN---PE------DP--QSLITNDVTHITSSVQAGKGL-W  131 (781)
T ss_dssp             SCEEEEEECSSSSE-EEEEESSSCEEEEETTTTEEEEE-CCC---TT------CS--SSCSCSCEEEEEECSSTTSEE-E
T ss_pred             cccceEEEcCCCCE-EEEEeCCCCcceECCCCCeEEee-ccc---cC------CC--CCcccCcceEEEecCccCCCE-E
Confidence            37999999999972 33455665799999987654321 000   00      00  000124688998887  6654 4


Q ss_pred             EEEcCCEEEEEEccCCCcccceEEecc------ccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEee----
Q 001352          414 VAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE----  483 (1093)
Q Consensus       414 s~~~d~~i~iwd~~~~~~~~~~~~~~~------h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~----  483 (1093)
                      .++.++.|..||..+++..    .+..      ....|.++...++|.   +..+..++-+..||..+++...-..    
T Consensus       132 i~t~~~gl~~~~~~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~  204 (781)
T 3v9f_A          132 VCTYYRGIEYLDIATGKFT----HYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQN  204 (781)
T ss_dssp             EEESSSCEEEEETTTTEEE----EESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC----
T ss_pred             EEECCCCeeEEECCCCeEE----eeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCC
Confidence            4553344889998765421    1211      134688888887776   4445556568899987775432211    


Q ss_pred             ---cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEccCCCEEEEEecCCC
Q 001352          484 ---GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKE  553 (1093)
Q Consensus       484 ---~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~d~~~l~~~~~~~~  553 (1093)
                         .....|.++..  +.++. |..++.+ -+.+||..+.......       ......|.++...++|...+....   
T Consensus       205 ~~~l~~~~i~~i~~--d~~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~---  277 (781)
T 3v9f_A          205 PNSLPGNDVRCIYK--DTNGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATEL---  277 (781)
T ss_dssp             ----CCSSEEEEEE--CTTCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESS---
T ss_pred             cccCCCCceeEEEE--cCCCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCC---
Confidence               01345777765  33444 4445555 6888887654332211       122456889998888876664421   


Q ss_pred             CceeEEEEeCCCCeeeeeee-----------cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe----
Q 001352          554 GESFLVEWNESEGAIKRTYQ-----------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID----  618 (1093)
Q Consensus       554 ~~~~i~iwd~~~~~~~~~~~-----------~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----  618 (1093)
                        +-|.++|..++.......           ........|.++...++|. |..|+.++.|..++..++.......    
T Consensus       278 --~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~  354 (781)
T 3v9f_A          278 --NGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQ  354 (781)
T ss_dssp             --SCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----C
T ss_pred             --CCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccc
Confidence              228889987765432211           1112246789999988775 6667777779999987655433211    


Q ss_pred             ---cCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCC
Q 001352          619 ---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP  695 (1093)
Q Consensus       619 ---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  695 (1093)
                         ..-....|.+++..++|. |.+|+.++-|..|+..+.... ....                                
T Consensus       355 ~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~--------------------------------  400 (781)
T 3v9f_A          355 MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI-YNKE--------------------------------  400 (781)
T ss_dssp             CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE-CC----------------------------------
T ss_pred             cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE-EccC--------------------------------
Confidence               011123477777777776 455665666888876532111 0000                                


Q ss_pred             CCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCccc
Q 001352          696 KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA  775 (1093)
Q Consensus       696 s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~  775 (1093)
                                                        +.......|.++...++|. |.+++.++.+..++.....       
T Consensus       401 ----------------------------------~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~-------  438 (781)
T 3v9f_A          401 ----------------------------------NRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKK-------  438 (781)
T ss_dssp             -------------------------------------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCE-------
T ss_pred             ----------------------------------CCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCc-------
Confidence                                              0000234577788777777 4445554555555432211       


Q ss_pred             ccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCC-----CCCeEEE
Q 001352          776 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP-----SPTATSL  850 (1093)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l  850 (1093)
                                      ....... ......|.++...++|.+.+... +.+..+|..+++........     ...|.++
T Consensus       439 ----------------~~~~~~~-~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i  500 (781)
T 3v9f_A          439 ----------------FQIIELE-KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSI  500 (781)
T ss_dssp             ----------------EEECCST-TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEE
T ss_pred             ----------------EEEeccC-CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEE
Confidence                            1110000 01356788999988888766554 67999998876654433222     4578999


Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecc--c-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeee
Q 001352          851 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE--G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL  927 (1093)
Q Consensus       851 ~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~--~-h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~  927 (1093)
                      +..+ ++++.+ |+.++-+..||..+++...-..  + ....|.++...++|++.++.. +|.|..||..+++...   .
T Consensus       501 ~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~---~  574 (781)
T 3v9f_A          501 AQDS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQV---F  574 (781)
T ss_dssp             EECT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEE---E
T ss_pred             EEcC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEE---c
Confidence            9988 776655 5554448889887665432211  1 245789999988988776544 7754888887755322   2


Q ss_pred             ecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCC---CC--CEEEEEEccCCCEEEEEeCCCc
Q 001352          928 QTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SV--PISQATFSCDCRMVFTSFVDGT 1002 (1093)
Q Consensus       928 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h---~~--~v~~~~fs~dg~~l~t~~~dg~ 1002 (1093)
                      ....+-..  ..|.++...++|.+.+++.. .|..++..++... .+....   ..  ...++...+||++++ |+.+| 
T Consensus       575 ~~~~gl~~--~~i~~i~~d~~g~lW~~t~~-Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-  648 (781)
T 3v9f_A          575 QRKEGLPN--THIRAISEDKNGNIWASTNT-GISCYITSKKCFY-TYDHSNNIPQGSFISGCVTKDHNGLIYF-GSING-  648 (781)
T ss_dssp             CGGGTCSC--CCCCEEEECSSSCEEEECSS-CEEEEETTTTEEE-EECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE-
T ss_pred             cccCCCCC--ceEEEEEECCCCCEEEEcCC-ceEEEECCCCceE-EecccCCccccccccCceEECCCCEEEE-ECCCc-
Confidence            22222111  35788999999987777644 4777887765432 221111   11  234677788998666 66677 


Q ss_pred             EEEEEcC
Q 001352         1003 LSIHEAS 1009 (1093)
Q Consensus      1003 v~vwd~~ 1009 (1093)
                      +..++..
T Consensus       649 l~~f~p~  655 (781)
T 3v9f_A          649 LCFFNPD  655 (781)
T ss_dssp             EEEECSC
T ss_pred             eEEEChh
Confidence            5556654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.52  E-value=4e-13  Score=163.80  Aligned_cols=250  Identities=9%  Similarity=-0.077  Sum_probs=163.2

Q ss_pred             cCCCCceeeeecCCCceEEEEEcc----CCcEEEEecCCCcee-EEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~----dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      +|+..+..++|||||++|+.+.+.    +.+|++||+.+|+.+ .. .                 +.+.  ....++|||
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wsp  177 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTP  177 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECT
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEec
Confidence            566679999999999975444333    357999999999865 11 0                 1111  126799999


Q ss_pred             CCCEEEEEEcCCE-------------EEEEEccCCCccc-ceEEeccccccEEEEEeeCCCCcEEEEEEcCCC----cEE
Q 001352          408 DGSLLGVAYSKHI-------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIK  469 (1093)
Q Consensus       408 dg~~las~~~d~~-------------i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~----~i~  469 (1093)
                      ||+.|+.++.+..             |++|++.++.... .......|...+..++|||||+.  |+.++.++    .|.
T Consensus       178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~  255 (695)
T 2bkl_A          178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVY  255 (695)
T ss_dssp             TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEE
T ss_pred             CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEE
Confidence            9999999988766             9999999875321 12122345668899999999995  44444444    677


Q ss_pred             EEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCC-CCceEEEEEccCC
Q 001352          470 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAP-GLGCTRMAYSANG  542 (1093)
Q Consensus       470 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~---~~~~~~~-~~~v~~~~~s~d~  542 (1093)
                      +||..+++ ...+..+...+....+ +  ++.+++...   .++.|.+||+.+...   ...+... ...+..++++ ++
T Consensus       256 ~~~~~~~~-~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~  330 (695)
T 2bkl_A          256 WKRPGEKD-FRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG  330 (695)
T ss_dssp             EECTTCSS-CEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT
T ss_pred             EEcCCCCc-eEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC
Confidence            77765554 4445555555555554 2  344444444   258899999987653   3333333 4467888888 66


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe----CCCcEEEEECCCCceE
Q 001352          543 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQLL  614 (1093)
Q Consensus       543 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~  614 (1093)
                      ..+++...  ++...|.++++. ++..+.+..+.  ...+..+.++|+++.++...    ..++|++||+.+++..
T Consensus       331 ~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~  401 (695)
T 2bkl_A          331 HLSLEYLK--DATSEVRVATLK-GKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE  401 (695)
T ss_dssp             EEEEEEEE--TTEEEEEEEETT-CCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             EEEEEEEE--CCEEEEEEEeCC-CCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence            66666554  234456666654 54455554432  25677788899988777432    4578999999988743

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.50  E-value=2.4e-12  Score=136.88  Aligned_cols=241  Identities=8%  Similarity=-0.046  Sum_probs=166.5

Q ss_pred             CceeeeecCCCceEEE-EEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352          337 SPMSMDFHPVQHTLLL-VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  415 (1093)
Q Consensus       337 ~V~~~~~spdg~~lla-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~  415 (1093)
                      ...+++++|+|+ +++ +...++.|.+||..++.....                   ...+...+.+++++++|+++++.
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~   84 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD   84 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence            778999999998 566 546788999999766543211                   11233567889999999966665


Q ss_pred             EcCCEEEEEEccCCCcccceEEec-cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeee
Q 001352          416 YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  494 (1093)
Q Consensus       416 ~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~  494 (1093)
                      . ++.|.+||..++...    .+. .....+..++++++|+  ++++...++.|.+|+..+.............+..+++
T Consensus        85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~  157 (270)
T 1rwi_B           85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV  157 (270)
T ss_dssp             T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred             C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence            5 889999998765422    222 2335689999999998  6777777889999986655443322233345677777


Q ss_pred             cccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeec
Q 001352          495 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG  574 (1093)
Q Consensus       495 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~  574 (1093)
                      .+  ++.++++...++.|.+||................+..++++++|..+++...    .+.|.+|+..+.........
T Consensus       158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~~~~~  231 (270)
T 1rwi_B          158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTVLPFT  231 (270)
T ss_dssp             CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEECCCC
T ss_pred             eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCcceeeccC
Confidence            54  5667777777899999998765544332333356889999999966665533    45699999876544332212


Q ss_pred             ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001352          575 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL  613 (1093)
Q Consensus       575 ~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~  613 (1093)
                      .   ...+.+++++++|+.+++...++.|++++....+.
T Consensus       232 ~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          232 G---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             S---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             C---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            1   24688999999998888888899999999876543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.49  E-value=2.4e-12  Score=158.04  Aligned_cols=247  Identities=10%  Similarity=0.054  Sum_probs=163.1

Q ss_pred             CCCCCeEEEEECCCCCEEEEEEcC-----CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC---
Q 001352          395 DPGVSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK---  466 (1093)
Q Consensus       395 ~h~~~V~~v~~s~dg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~---  466 (1093)
                      +|...+..++|||||++||.++.+     ..|++||+.+++.+..    ..+...+..++|+|| +  .|+.++.|+   
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~  232 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE  232 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence            344578899999999999988654     4699999999875431    112222357899999 8  455555444   


Q ss_pred             -----------cEEEEECCCCce--eEEee--cCCCCeEEeeecccCCccEEEEEecCC-----eEEEEEcCCC--CceE
Q 001352          467 -----------TIKVWDAVTGSR--TYSFE--GHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL--GARV  524 (1093)
Q Consensus       467 -----------~i~vwd~~~~~~--~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~--~~~~  524 (1093)
                                 .|++|++.++..  ...+.  .+...+..+.|  ++||++|+..+.++     .|.+||+.++  ....
T Consensus       233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  310 (741)
T 1yr2_A          233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT  310 (741)
T ss_dssp             ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred             ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence                       389999988763  22233  23335777777  56778888777654     7999999876  3133


Q ss_pred             EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC--eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCc
Q 001352          525 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV  602 (1093)
Q Consensus       525 ~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~  602 (1093)
                      .+..+...+... ++|+|+.|+..+..+.....|++||+.++  .....+..+.   ..+..+.++ ++..+++...|+.
T Consensus       311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~  385 (741)
T 1yr2_A          311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAK  385 (741)
T ss_dssp             EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTE
T ss_pred             EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCE
Confidence            343333344444 35899999888765444678999999885  3333343333   456677777 4556677888888


Q ss_pred             EEEEECC-CCceEEEEecCCCCCCCceEEEecCCCEEEEEEC----CCeEEEEEcCCCc
Q 001352          603 IKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN  656 (1093)
Q Consensus       603 i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~  656 (1093)
                      .+||.+. +++....+..+. ...+..++++|+++.++....    .+++++||+.+++
T Consensus       386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            7777554 455566655432 234677889999886664432    4789999998764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.49  E-value=1.1e-10  Score=126.12  Aligned_cols=242  Identities=11%  Similarity=0.034  Sum_probs=170.8

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +..+...+.+++++++|++.++...++.|.+||.. ++ +.. .....+...+.++++.++|.  ++++...++.|..||
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~   84 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITE-YPLPTPDAKVMCLTISSDGE--VWFTENAANKIGRIT   84 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEE-ecCCcccCceeeEEECCCCC--EEEeCCCCCeEEEEC
Confidence            44466789999999999988776667899999988 54 221 12233456799999999998  677777788999999


Q ss_pred             CCCCcee-EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEec
Q 001352          473 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGT  550 (1093)
Q Consensus       473 ~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~  550 (1093)
                      .. ++.. ..+......+..+++.  +++.++++...++.|.+||. ++.... ........+..++++++|+..++...
T Consensus        85 ~~-g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~  160 (299)
T 2z2n_A           85 KK-GIIKEYTLPNPDSAPYGITEG--PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ  160 (299)
T ss_dssp             TT-SCEEEEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred             CC-CcEEEEeCCCcCCCceeeEEC--CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence            76 4432 2222345567888875  46677777777889999988 433322 23334457889999999987776532


Q ss_pred             CCCCceeEEEEeCCCCeeeee-eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceE
Q 001352          551 SKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  629 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  629 (1093)
                          .+.|..||. +++.... ....   ...+..+++++++..+++...++.|.+||. +++... +........+..+
T Consensus       161 ----~~~i~~~~~-~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i  230 (299)
T 2z2n_A          161 ----NNAIGRITE-SGDITEFKIPTP---ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAI  230 (299)
T ss_dssp             ----TTEEEEECT-TCCEEEEECSST---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEE
T ss_pred             ----CCEEEEEcC-CCcEEEeeCCCC---CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeE
Confidence                456999998 6665432 1111   256889999999887666667889999999 666443 3333233457899


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcC
Q 001352          630 CFNKNGTLLAVIANENRIKILETP  653 (1093)
Q Consensus       630 ~~s~~~~~l~~~~~dg~i~iw~~~  653 (1093)
                      +++++|+++++...++.|..|+..
T Consensus       231 ~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          231 TAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             EECSTTCEEEEETTTTEEEEEETT
T ss_pred             EECCCCCEEEeccCCceEEEECCC
Confidence            999999866666577899999983

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.49  E-value=1.1e-11  Score=137.10  Aligned_cols=206  Identities=14%  Similarity=0.076  Sum_probs=143.7

Q ss_pred             eEEEEccCCCEEEEEe---CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeee-
Q 001352          807 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-  882 (1093)
Q Consensus       807 ~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~-  882 (1093)
                      ..++|+|||+++.++.   ++.|.+.|+.+++.+.++.....    ....|++.+.+++.+.||.+.+.+..+++.... 
T Consensus       180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~  255 (426)
T 3c75_H          180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN  255 (426)
T ss_dssp             GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred             ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence            3568899999888875   37899999999999988874321    334442446666777888888888866655422 


Q ss_pred             ---cccccCCe-EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcc----cCCCCceEEEEccCCCEEEE
Q 001352          883 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQTRFLL  954 (1093)
Q Consensus       883 ---l~~h~~~V-~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~dg~~l~~  954 (1093)
                         +.....++ ..+.|+++++.++..+..+.|.+.|+.+................    ........++++||++.+.+
T Consensus       256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV  335 (426)
T 3c75_H          256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL  335 (426)
T ss_dssp             CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred             eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence               22112222 23578999988888888899999999765432211111110000    00012334799999998877


Q ss_pred             Ee-----------CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEEcCCCceEEEec
Q 001352          955 VH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       955 ~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~-~l~t~~-~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                      ..           ++.|.+.|+.+++.+..+..+.  ....+.|+|||+ +++++. .++.|.|+|+.+++.+.++.
T Consensus       336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~  410 (426)
T 3c75_H          336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD  410 (426)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EecccccccccCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence            42           3479999999999998876543  588899999999 888887 58999999999999998873

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.48  E-value=2e-10  Score=124.15  Aligned_cols=277  Identities=10%  Similarity=0.037  Sum_probs=190.2

Q ss_pred             CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEE
Q 001352          335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  414 (1093)
Q Consensus       335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las  414 (1093)
                      ...+.+++++++|+ +.++...++.|.+||.. ++.... .                 +..+...+.++++.++|.+.++
T Consensus        19 ~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~l~v~   78 (300)
T 2qc5_A           19 DSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF-E-----------------VPTPDAKVMCLIVSSLGDIWFT   78 (300)
T ss_dssp             TCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE-E-----------------CSSTTCCEEEEEECTTSCEEEE
T ss_pred             CCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE-E-----------------CCCCCCcceeEEECCCCCEEEE
Confidence            34889999999998 56666678999999988 554321 1                 2234467999999999998887


Q ss_pred             EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE-EeecCCCCeEEee
Q 001352          415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLC  493 (1093)
Q Consensus       415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~-~~~~h~~~v~~~~  493 (1093)
                      ...++.|..||.. ++. . ...+......+..+++.++|.  ++++...++.|..||.. ++... .+......+..++
T Consensus        79 ~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~  152 (300)
T 2qc5_A           79 ENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFIT  152 (300)
T ss_dssp             ETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE
T ss_pred             ecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEE
Confidence            7668889999988 542 2 112333446789999999998  67777768899999987 65542 2333445677888


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeee-
Q 001352          494 PHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-  571 (1093)
Q Consensus       494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-  571 (1093)
                      +.  +++.+.++...++.|..++. .+.... ........+..++++++|+..++...    .+.|..||. +++.... 
T Consensus       153 ~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~  224 (300)
T 2qc5_A          153 LG--SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISEYD  224 (300)
T ss_dssp             EC--TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEE
T ss_pred             EC--CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEEEE
Confidence            74  45666666666889999988 333322 22233456889999999987666532    446999998 5544332 


Q ss_pred             eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001352          572 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE  651 (1093)
Q Consensus       572 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~  651 (1093)
                      ....   ...+.+++++++++..++...++.|..||. +++.. .+........+.+++++++|++.++.. . .|..++
T Consensus       225 ~~~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~  297 (300)
T 2qc5_A          225 IPTP---NARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLN  297 (300)
T ss_dssp             CSST---TCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred             CCCC---CCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence            2211   256889999999886666666789999998 45443 333332234578999999998665544 4 666666


Q ss_pred             c
Q 001352          652 T  652 (1093)
Q Consensus       652 ~  652 (1093)
                      .
T Consensus       298 p  298 (300)
T 2qc5_A          298 L  298 (300)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.47  E-value=7.5e-12  Score=133.04  Aligned_cols=240  Identities=10%  Similarity=-0.057  Sum_probs=166.3

Q ss_pred             CeEEEEECCCCCEEE-EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352          399 SVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  477 (1093)
Q Consensus       399 ~V~~v~~s~dg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  477 (1093)
                      ...+++++++|++++ +...++.|.+||..++....   ....+...+.+++++++|+  ++++.. ++.|.+||..++.
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence            788999999999777 44678899999987653211   1123335678999999998  566666 8899999976654


Q ss_pred             eeEEee-cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001352          478 RTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  556 (1093)
Q Consensus       478 ~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~  556 (1093)
                      . ..+. .....+..+++.+  ++.++++...++.|.+|+..+.............+..++++++|+.+++...    .+
T Consensus        99 ~-~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~  171 (270)
T 1rwi_B           99 Q-TVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN  171 (270)
T ss_dssp             C-EECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GT
T ss_pred             E-eeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CC
Confidence            3 3333 2335678888854  5667777778899999976554433322222346788999999986665543    45


Q ss_pred             eEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC
Q 001352          557 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT  636 (1093)
Q Consensus       557 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  636 (1093)
                      .|.+||..++..........   ..+..++++++|..+++...++.|.+|+..+..... ... .+...+.+++++++|+
T Consensus       172 ~i~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~  246 (270)
T 1rwi_B          172 RVVKLEAESNNQVVLPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRT  246 (270)
T ss_dssp             EEEEECTTTCCEEECCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCC
T ss_pred             EEEEEecCCCceEeecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCC
Confidence            69999988766543322222   568899999999777777778899999987654433 221 2223478899999999


Q ss_pred             EEEEEECCCeEEEEEcCCCc
Q 001352          637 LLAVIANENRIKILETPESN  656 (1093)
Q Consensus       637 ~l~~~~~dg~i~iw~~~~~~  656 (1093)
                      ++++...++.|++++....+
T Consensus       247 l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          247 VYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EEEEEGGGTEEEEECCCGGG
T ss_pred             EEEEECCCCEEEEEcCCCcc
Confidence            88888889999999987653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.46  E-value=8.9e-12  Score=137.92  Aligned_cols=281  Identities=11%  Similarity=0.093  Sum_probs=191.6

Q ss_pred             CCCceEEEEEccC----CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE----
Q 001352          345 PVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY----  416 (1093)
Q Consensus       345 pdg~~llasg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~----  416 (1093)
                      |++++++++...+    +.|.+.|..+++.+.....                   -..+  .+++||||++|+++.    
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-------------------G~~P--gia~SpDgk~lyVan~~~~  140 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-------------------GFLP--HPVAAEDGSFFAQASTVFE  140 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-------------------CSSC--EEEECTTSSCEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-------------------CCCC--ceEECCCCCEEEEEecccc
Confidence            5677666665544    7999999999998876332                   2234  799999999998886    


Q ss_pred             ------cCCEEEEEEccCCCcccceEEec--c---ccccEEEEEeeCCCCcEEEEEEc--CCCcEEEEECCCCceeEEee
Q 001352          417 ------SKHIVQLYAYHGGSDARQQLEID--A---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFE  483 (1093)
Q Consensus       417 ------~d~~i~iwd~~~~~~~~~~~~~~--~---h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~~~~  483 (1093)
                            .++.|.++|..+++.+..+. +.  .   .......++|+|||++  ++.+.  .++.|.+.|+.+++.+.++.
T Consensus       141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~  217 (426)
T 3c75_H          141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD  217 (426)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence                  36789999999987665432 22  0   0123456899999994  44444  36889999999999998886


Q ss_pred             cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE----ecCCCCc-eEEEEEccCCCEEEEEecCCCCceeE
Q 001352          484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFL  558 (1093)
Q Consensus       484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~-v~~~~~s~d~~~l~~~~~~~~~~~~i  558 (1093)
                      ....    ....+... ..+++.+.||.+.+.+....+....    +.....+ ...+.+++++..++....    .+.+
T Consensus       218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V  288 (426)
T 3c75_H          218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI  288 (426)
T ss_dssp             CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred             cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence            4221    12222222 4667777888888888844443321    1111112 124567899888777654    4569


Q ss_pred             EEEeCCCCeee--eeeecc-----c--ccCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceEEEEec
Q 001352          559 VEWNESEGAIK--RTYQGL-----Q--LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDA  619 (1093)
Q Consensus       559 ~iwd~~~~~~~--~~~~~~-----~--~~~~~v~~v~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~  619 (1093)
                      .+.|...+...  ..+...     .  ........++++|+++++++...          .+.|.++|..+.+.+..+..
T Consensus       289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v  368 (426)
T 3c75_H          289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL  368 (426)
T ss_dssp             EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence            99998655421  211110     0  00011223689999998887642          35799999999999999876


Q ss_pred             CCCCCCCceEEEecCCC-EEEEEE-CCCeEEEEEcCCCceeeec
Q 001352          620 GGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAA  661 (1093)
Q Consensus       620 ~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~  661 (1093)
                      ..   ....++|+|||+ ++++.. .++.|.++|..+.+.+..+
T Consensus       369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            53   268899999999 888888 5899999999999888765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.42  E-value=6.9e-12  Score=154.01  Aligned_cols=247  Identities=11%  Similarity=0.010  Sum_probs=158.5

Q ss_pred             CCCCceeeeecCCCceEEEEEccCC----cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCC
Q 001352          334 GSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  409 (1093)
Q Consensus       334 h~~~V~~~~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg  409 (1093)
                      |+..+..++|||||++++.+.+.+|    .|++||+.+|+.+.. .                 .  +...+..++|||| 
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-----------------~--~~~~~~~~~wspD-  219 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-----------------L--KWVKFSGLAWLGN-  219 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-----------------E--EEEESCCCEESTT-
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-----------------C--CCceeccEEEECC-
Confidence            4447889999999997544444334    599999999987642 0                 0  1122357899999 


Q ss_pred             CEEEEEEcCCE--------------EEEEEccCCCcccceEEec--cccccEEEEEeeCCCCcEEEEEEcC-----CCcE
Q 001352          410 SLLGVAYSKHI--------------VQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGD-----DKTI  468 (1093)
Q Consensus       410 ~~las~~~d~~--------------i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~l~l~s~~~-----d~~i  468 (1093)
                      +.|+.++.++.              |++|++.++...... .+.  .+...+..+.|||||+.  |+..+.     ...|
T Consensus       220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l  296 (741)
T 1yr2_A          220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQP-VFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTV  296 (741)
T ss_dssp             SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEE-EECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEE
T ss_pred             CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEE-EeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceE
Confidence            99998876543              889999876532111 222  33346889999999994  444443     3489


Q ss_pred             EEEECCCC--ceeEEeecCCCCeEEeeecccCCccEEEEEec----CCeEEEEEcCCCC-c-eEEecCCCCceEEEEEcc
Q 001352          469 KVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-A-RVDYDAPGLGCTRMAYSA  540 (1093)
Q Consensus       469 ~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~-~-~~~~~~~~~~v~~~~~s~  540 (1093)
                      .+||+.++  ++...+..+...+....+   +++..|+..+.    ++.|.+||+.+.. . ...+..+...+..++++ 
T Consensus       297 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-  372 (741)
T 1yr2_A          297 HVARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-  372 (741)
T ss_dssp             EEEEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-
T ss_pred             EEEECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-
Confidence            99999887  425556555555544432   35566776665    3459999988742 2 33344444456677776 


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEE----eCCCcEEEEECCCCce
Q 001352          541 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA----GDDHVIKIWDMNKVQL  613 (1093)
Q Consensus       541 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~----~~dg~i~iwd~~~~~~  613 (1093)
                      ++..+++...  ++...|.+++.. +...+.+..+.  ...+..+.++|+++.++..    ...++|++||+.+++.
T Consensus       373 ~~~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          373 GNRLFASYIH--DAKSQVLAFDLD-GKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             BTEEEEEEEE--TTEEEEEEEETT-SCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             CCEEEEEEEE--CCEEEEEEEeCC-CCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            4455555544  234556667764 44555554322  2568889999998866643    2457899999988873

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.38  E-value=1.7e-09  Score=116.72  Aligned_cols=243  Identities=12%  Similarity=0.027  Sum_probs=168.7

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +......+.++++.++|+..++...++.|.+||.. ++...  ..+..+...+..+++.++|.  ++++...++.|..||
T Consensus        15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d   89 (300)
T 2qc5_A           15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE--FEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLS   89 (300)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred             cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE--EECCCCCCcceeEEECCCCC--EEEEecCCCeEEEEC
Confidence            33456788999999999988877778899999988 54221  12334446789999999998  677766678899999


Q ss_pred             CCCCceeE-EeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce-EEecCCCCceEEEEEccCCCEEEEEec
Q 001352          473 AVTGSRTY-SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGT  550 (1093)
Q Consensus       473 ~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~d~~~l~~~~~  550 (1093)
                      .. ++... .+......+..+++.  +++.+.++...++.|..+|.. ++.. .........+..+++.++|+..++...
T Consensus        90 ~~-g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  165 (300)
T 2qc5_A           90 KK-GGFTEYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ  165 (300)
T ss_dssp             TT-SCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred             CC-CCeEEecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC
Confidence            77 65432 222234567888875  466677777668899999887 3333 223334457889999999996655432


Q ss_pred             CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352          551 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  630 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  630 (1093)
                          .+.|..+|. +++... +.... ....+..++++++++.+++....+.|.+|+. +++.... ........+.+++
T Consensus       166 ----~~~i~~~~~-~g~~~~-~~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~  236 (300)
T 2qc5_A          166 ----NNSIGRITN-TGKLEE-YPLPT-NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIPTPNARPHAIT  236 (300)
T ss_dssp             ----TTEEEEECT-TCCEEE-EECSS-TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEE
T ss_pred             ----CCeEEEECC-CCcEEE-eeCCC-CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCCCCCCceEEE
Confidence                446999998 555443 22111 1256889999999877666666778999998 5554433 2222234568899


Q ss_pred             EecCCCEEEEEECCCeEEEEEcC
Q 001352          631 FNKNGTLLAVIANENRIKILETP  653 (1093)
Q Consensus       631 ~s~~~~~l~~~~~dg~i~iw~~~  653 (1093)
                      ++++|++.++...++.|..|+..
T Consensus       237 ~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          237 AGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             ECSTTCEEEEETTTTEEEEECTT
T ss_pred             ECCCCCEEEeccCCCeEEEECCC
Confidence            99999876666667899999984

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.38  E-value=1.4e-10  Score=126.29  Aligned_cols=246  Identities=13%  Similarity=0.099  Sum_probs=163.3

Q ss_pred             CCceeeeecCCCceEEEE-------EccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          336 SSPMSMDFHPVQHTLLLV-------GTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llas-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      ....+++|+++|+ ++++       +..++.|.+||..+++......               ....++...+.+++++++
T Consensus        18 ~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---------------~~~~~~~~~~~~i~~~~~   81 (314)
T 1pjx_A           18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---------------PEVNGYGGIPAGCQCDRD   81 (314)
T ss_dssp             TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEEC---------------CEETTEECCEEEEEECSS
T ss_pred             CCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe---------------cccCCCCCCCceEEEecC
Confidence            3678999999997 5666       4667899999998887542100               001234567999999999


Q ss_pred             -CCEEEEEEcCCEEEEEEccCCCcccc-eEEecc-ccccEEEEEeeCCCCcEEEEEEcCC---------------CcEEE
Q 001352          409 -GSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCGDD---------------KTIKV  470 (1093)
Q Consensus       409 -g~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d---------------~~i~v  470 (1093)
                       |+++++. ..+.|.+||.. ++.... .....+ ....+.+++++++|+  ++++...+               +.|..
T Consensus        82 ~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l~~  157 (314)
T 1pjx_A           82 ANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             SSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             CCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeEEE
Confidence             6655544 44479999988 653211 100011 224588999999998  56665544               56777


Q ss_pred             EECCCCceeEEeecCCCCeEEeeec--ccCCccEEEE-EecCCeEEEEEcC-CCCc-----eEEecCCC-CceEEEEEcc
Q 001352          471 WDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHFIFS-ISVDGKIKAWLYD-SLGA-----RVDYDAPG-LGCTRMAYSA  540 (1093)
Q Consensus       471 wd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l~s-~~~dg~i~vwd~~-~~~~-----~~~~~~~~-~~v~~~~~s~  540 (1093)
                      ||.. ++..... .+......++++  .++++..++. ...++.|.+|+++ .+..     ...+..+. .....+++++
T Consensus       158 ~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~  235 (314)
T 1pjx_A          158 FTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE  235 (314)
T ss_dssp             ECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred             ECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence            7765 5544332 333445777775  1156655544 4568999999986 3321     11222232 5678899999


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 001352          541 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK  610 (1093)
Q Consensus       541 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~  610 (1093)
                      +|+..++...    .+.|.+||..+++.+..+..+.   ..+.+++|+|+++.|+++ ..++.|..|++..
T Consensus       236 ~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          236 DNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TCCEEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            9988877643    4569999998787777766544   678999999999966554 4568899999864

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.35  E-value=2e-10  Score=125.11  Aligned_cols=245  Identities=9%  Similarity=0.063  Sum_probs=163.2

Q ss_pred             ceEEEEeecCCceEEE-------eeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCC-CCCCCCCeeE
Q 001352          737 KISRLTYNNGGQAIFA-------LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT-DSNSQEAVPC  808 (1093)
Q Consensus       737 ~i~~l~~s~~g~~l~~-------~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~  808 (1093)
                      ...+++|+++|..+++       ...++.+.+|+....                      ... ....+ ..++...+.+
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g----------------------~~~-~~~~~~~~~~~~~~~~   75 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG----------------------KKT-VICKPEVNGYGGIPAG   75 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC----------------------CEE-EEECCEETTEECCEEE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC----------------------cEE-EEEecccCCCCCCCce
Confidence            4578899999987776       566778888764322                      111 10000 0013356889


Q ss_pred             EEEccC-CCEEEEEeCCeEEEEEccCceeEEE-ECC----CCCCeEEEEEcCCCCCEEEEEeCC---------------C
Q 001352          809 FALSKN-DAYLFSASGGVISLYIVMTFKTILT-IMP----PSPTATSLAFNPHDNNVIAIGMDD---------------S  867 (1093)
Q Consensus       809 l~~s~d-g~~la~~~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~s~~d~~~lasg~~d---------------g  867 (1093)
                      ++++++ |+++++...+.|.+||.. ++.... ...    ....+.++++++ +++++++...+               +
T Consensus        76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~  153 (314)
T 1pjx_A           76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence            999999 776666656689999988 665433 221    123578999999 78887776655               5


Q ss_pred             eEEEEEcCCcceeeecccccCCeEEEEEe----CCCCEEEE-EeCCCcEEEEeCC-CCceeeeeeeecCCCcccCCCCce
Q 001352          868 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVS-SGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSET  941 (1093)
Q Consensus       868 ~i~iwd~~~~~~~~~l~~h~~~V~~l~~s----~dg~~l~s-~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~  941 (1093)
                      .|..|+.. ++... +..+......++|+    |+++.|.. ...++.|.+|++. .++...........++..  ..+.
T Consensus       154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p~  229 (314)
T 1pjx_A          154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGAD  229 (314)
T ss_dssp             EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEEE
T ss_pred             eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCCC
Confidence            67777765 55433 33344557889999    99976544 4567889999986 443322222322222210  1367


Q ss_pred             EEEEccCCCEEEEE-eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCC
Q 001352          942 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF-TSFVDGTLSIHEASNL 1011 (1093)
Q Consensus       942 ~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~-t~~~dg~v~vwd~~~~ 1011 (1093)
                      .++++++|++.++. .++.|.+||..+++.+..+ ..+...+.+++|++||+.|+ +...++.|..|++...
T Consensus       230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            89999999988874 6789999999878766553 34457899999999999554 4445678999998753

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.33  E-value=5.4e-10  Score=125.56  Aligned_cols=242  Identities=12%  Similarity=0.020  Sum_probs=163.6

Q ss_pred             CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352          336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  415 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~  415 (1093)
                      ...+.++|+|+|+ |+++...++.|++||..++.....                   ... ..... ++|+|++++|+++
T Consensus       131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~  188 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI  188 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred             CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence            3788999999998 788888889999999998866532                   112 22233 9999999999988


Q ss_pred             EcCC--EEEEEEccCCCcccceEEecc-ccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE----eecCCCC
Q 001352          416 YSKH--IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----FEGHGAP  488 (1093)
Q Consensus       416 ~~d~--~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~----~~~h~~~  488 (1093)
                      ..++  .|.+|+..++........+.. +...+.+++++|++..  |+.+..++.|+.||..++.....    ..++...
T Consensus       189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~  266 (409)
T 3hrp_A          189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT  266 (409)
T ss_dssp             BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred             ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence            7765  899999887654332211222 4566789999995553  44466688999999987764332    2222222


Q ss_pred             e--EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------------CceEEEEEccCCCEEEEEecC
Q 001352          489 V--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------------LGCTRMAYSANGRRLFSCGTS  551 (1093)
Q Consensus       489 v--~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------------~~v~~~~~s~d~~~l~~~~~~  551 (1093)
                      -  ..++|++. ++.++++...++.|+.|+.+..  ...+.+..               .....++++++|+++++-.  
T Consensus       267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~--  341 (409)
T 3hrp_A          267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG--  341 (409)
T ss_dssp             SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred             CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence            2  27888653 3566777777899999987653  22222221               2468899999999665543  


Q ss_pred             CCCceeEEEEeCCCCeeeeeeeccc------------ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001352          552 KEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  608 (1093)
Q Consensus       552 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~  608 (1093)
                       .+...|+.|+..++.. ..+.++.            ........+++++++..+++-..++.|+.+++
T Consensus       342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence             0266799999877764 3343331            00245789999999877777777888887765

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.32  E-value=2.3e-10  Score=138.97  Aligned_cols=252  Identities=11%  Similarity=0.056  Sum_probs=165.0

Q ss_pred             cCCCCceeeeecCCCceEEEEEccC----CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      +|...+..++|||||++++.+.+..    .+|++||+.+|+.+.. .                 +  +......++|+ |
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-D  184 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-G  184 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-T
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-C
Confidence            3555788999999999755444333    4699999999986542 1                 1  11113467899 9


Q ss_pred             CCEEEEEEcCC-------------EEEEEEccCCCcccc-eEEecc-ccccEEEEEeeCCCCcEEEEEEc---CCCcEEE
Q 001352          409 GSLLGVAYSKH-------------IVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCG---DDKTIKV  470 (1093)
Q Consensus       409 g~~las~~~d~-------------~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~---~d~~i~v  470 (1093)
                      |+.|+.++.+.             .|++|++.++..... +..... |...+..+.|+|||+.+ +++.+   .+..|.+
T Consensus       185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~  263 (693)
T 3iuj_A          185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYV  263 (693)
T ss_dssp             TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEE
T ss_pred             CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEE
Confidence            99999998774             499999987653211 111223 45567889999999963 33333   2358999


Q ss_pred             EECCCCc-eeEEeecCCCCeEEeeecccCCccEEEEEecC---CeEEEEEcCCCCc--eEEecCCCCceEEEEEccCCCE
Q 001352          471 WDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRR  544 (1093)
Q Consensus       471 wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~  544 (1093)
                      ||+.++. ....+..+....... +.+. ++.+++....+   +.|..+++.+...  ...+..+...+.  .|+++++.
T Consensus       264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~  339 (693)
T 3iuj_A          264 KDLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY  339 (693)
T ss_dssp             EETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE
T ss_pred             EECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE
Confidence            9998774 455666666655554 3332 23444454443   6799999987654  234444444444  89999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceE
Q 001352          545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNKVQLL  614 (1093)
Q Consensus       545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~  614 (1093)
                      |+..... ++...|++|++..+.. +.+....  ...+..+.++++++.++....+    ++++.||+.+++..
T Consensus       340 lv~~~~~-~g~~~l~~~d~~g~~~-~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          340 LFAEYMV-DATARVEQFDYEGKRV-REVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             EEEEEEE-TTEEEEEEECTTSCEE-EEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             EEEEEEE-CCeeEEEEEECCCCee-EEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence            8877642 3356799999885543 3333222  2456777788888877765444    88999999887654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.32  E-value=3.9e-10  Score=122.96  Aligned_cols=174  Identities=9%  Similarity=0.066  Sum_probs=136.3

Q ss_pred             CCeeEEEEccCCCEEEEEeCCeEEEEEccCce-----------eEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001352          804 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY  872 (1093)
Q Consensus       804 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iw  872 (1093)
                      ..+..+++++...++++|+...+.+|++++.+           ..... .+.. |+.++|   |+.+|+++ .++.|++|
T Consensus        38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence            36889999999999999998888889986544           11222 2455 999999   57888888 88999999


Q ss_pred             EcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEE
Q 001352          873 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF  952 (1093)
Q Consensus       873 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  952 (1093)
                      |+.+.........|..++.++.+.+.  .+++++.||.|.+||+.++....   +      .   ..|++++|||+| +.
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~------~---~~Vs~v~WSpkG-~~  176 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---L------A---QNVTSFDVTNSQ-LA  176 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---E------E---ESEEEEEECSSE-EE
T ss_pred             EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---c------c---CCceEEEEcCCc-eE
Confidence            99887666666778888988888765  38889999999999999765321   1      1   259999999999 44


Q ss_pred             EEEeCCeEEEEEcCCcce--eeeee-----c---CCCCCEEEEEEccCCCEEEEEe
Q 001352          953 LLVHETHLAIYEAEELTC--LKQWF-----P---ISSVPISQATFSCDCRMVFTSF  998 (1093)
Q Consensus       953 ~~~~d~~i~vwd~~~~~~--~~~~~-----~---~h~~~v~~~~fs~dg~~l~t~~  998 (1093)
                      +...||++++|+...++.  ...+.     .   +|...|.++.|.+++.++++-+
T Consensus       177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            457899999999887775  44431     1   4788999999999999998744

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.31  E-value=4.9e-06  Score=97.98  Aligned_cols=534  Identities=9%  Similarity=-0.016  Sum_probs=291.1

Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  490 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~  490 (1093)
                      +|+.+ ..+.|+..++.+..... ...+. .-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~   83 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE   83 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred             EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence            55554 55679999998654211 11122 2346789999997764 556666788999999876544333332224466


Q ss_pred             EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352          491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  570 (1093)
Q Consensus       491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~  570 (1093)
                      .+++.+. ++.+.++-...+.|.+.+++...........-.....+++.|....|+.....  ....|...++.......
T Consensus        84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~  160 (628)
T 4a0p_A           84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT  160 (628)
T ss_dssp             EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred             eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence            7777543 33456666677889999987655444443444567899999976666665421  14568888876544333


Q ss_pred             eeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001352          571 TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  649 (1093)
Q Consensus       571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  649 (1093)
                      ....    ......++++++++.|+.+. ..+.|...|+..... ..+...  ......+++.. +.++++-...+.|..
T Consensus       161 l~~~----~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~  232 (628)
T 4a0p_A          161 LVPN----VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIER  232 (628)
T ss_dssp             EECS----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             EECC----CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEE
Confidence            3322    25678999999877777654 567899999876544 333222  22345777765 444455455788988


Q ss_pred             EEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcccccccc
Q 001352          650 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  729 (1093)
Q Consensus       650 w~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~  729 (1093)
                      .+..++.....+.........+.+.......  +...+.       ..++     +.  ..+.+-...  ....|.  ..
T Consensus       233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~--~~n~C~-------~~ng-----~C--~~~C~~~~~--~~~~C~--C~  292 (628)
T 4a0p_A          233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS--GWNECA-------SSNG-----HC--SHLCLAVPV--GGFVCG--CP  292 (628)
T ss_dssp             EETTTCCSCEEEECSCCSCCEEEEECGGGSC--CCCTTT-------TTGG-----GC--SSEEEEETT--TEEEEE--CS
T ss_pred             EECCCCCceEEEecCCCCcceeeeeeecccc--cceEec-------cCCC-----Cc--chhhhcCCC--CCeeEE--cC
Confidence            8877665544444332222333222111000  000000       0000     00  000000000  000000  00


Q ss_pred             Cc-cccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeE
Q 001352          730 PS-KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC  808 (1093)
Q Consensus       730 ~~-~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  808 (1093)
                      +. .......+|.   +....++.+. ...|+-..+...                    ... -.....   ..-..+..
T Consensus       293 ~g~~l~~d~~~C~---~~~~~Ll~s~-~~~i~~i~l~~~--------------------~~~-~~~l~~---~~~~~~~~  344 (628)
T 4a0p_A          293 AHYSLNADNRTCS---APTTFLLFSQ-KSAINRMVIDEQ--------------------QSP-DIILPI---HSLRNVRA  344 (628)
T ss_dssp             TTCEECTTSSCEE---CCSSEEEEEE-TTEEEEECCCTT--------------------CCC-CEECCC---TTCSCEEE
T ss_pred             CCcEecccCCcCc---cccceeeeec-cceEEEEecccc--------------------cCc-eEEEEe---hhcCCceE
Confidence            00 0000011111   1122222222 223332221110                    000 001111   12345778


Q ss_pred             EEEccCCCEEEEEe--CCeEEEEEccCceeEEEECC------CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCccee
Q 001352          809 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  880 (1093)
Q Consensus       809 l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~  880 (1093)
                      ++|.+....|..+.  .+.|..++.........+..      ....+..+|+....+.+..+-+..+.|.+.++. |+..
T Consensus       345 ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~  423 (628)
T 4a0p_A          345 IDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSV  423 (628)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEE
T ss_pred             EEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeE
Confidence            99999888777776  47788888764433333332      234678999988334455566677899999986 5544


Q ss_pred             eecc-cccCCeEEEEEeC-CCCEEEEEeCCC--cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-
Q 001352          881 SKLE-GHSKRVTGLVFSD-ALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-  955 (1093)
Q Consensus       881 ~~l~-~h~~~V~~l~~s~-dg~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-  955 (1093)
                      ..+. .......++++.| .|.++.+-....  .|...++++.....  .+.   ...   .....+++.++++.|..+ 
T Consensus       424 ~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~~---~~l---~~P~gla~D~~~~~LYw~D  495 (628)
T 4a0p_A          424 GVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFF---SGL---SKPIALALDSRLGKLFWAD  495 (628)
T ss_dssp             EEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EEC---SSC---SCEEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EEe---ccC---CCccEEEEeCCCCEEEEEe
Confidence            4432 3456689999999 555555533332  46666666533211  111   111   257899999998888775 


Q ss_pred             -eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352          956 -HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       956 -~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                       ..+.|...++. |.....+.........++++.. +.++++-...+.|...|..+|+....+.
T Consensus       496 ~~~~~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i~  557 (628)
T 4a0p_A          496 SDLRRIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKVQ  557 (628)
T ss_dssp             TTTTEEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred             CCCCEEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence             34689999985 4444444433445567788754 5555555566788888888776544443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.30  E-value=4.9e-10  Score=120.57  Aligned_cols=228  Identities=12%  Similarity=0.101  Sum_probs=154.2

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  416 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~  416 (1093)
                      -..+..|+|++..++++...++.|..||..+++....                     .....+.+++++++|+++++ .
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---------------------~~~~~~~~i~~~~dG~l~v~-~   71 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV---------------------TMDAPVSSVALRQSGGYVAT-I   71 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---------------------ECSSCEEEEEEBTTSSEEEE-E
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE---------------------eCCCceEEEEECCCCCEEEE-E
Confidence            4568999997767888888899999999998765321                     13467999999999996554 3


Q ss_pred             cCCEEEEEEccCCCcccceEEecc--ccccEEEEEeeCCCCcEEEEEE-cC--------CCcEEEEECCCCceeEEeecC
Q 001352          417 SKHIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITC-GD--------DKTIKVWDAVTGSRTYSFEGH  485 (1093)
Q Consensus       417 ~d~~i~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~l~l~s~-~~--------d~~i~vwd~~~~~~~~~~~~h  485 (1093)
                       ++.|.+||..+++. ..+.....  ....+++++++|+|+  ++++. ..        ...-.||.+.....+..+..+
T Consensus        72 -~~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~  147 (297)
T 3g4e_A           72 -GTKFCALNWKEQSA-VVLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ  147 (297)
T ss_dssp             -TTEEEEEETTTTEE-EEEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE
T ss_pred             -CCeEEEEECCCCcE-EEEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEEEeec
Confidence             56799999988753 22212111  234688999999998  44443 21        123455554432223333334


Q ss_pred             CCCeEEeeecccCCccEE-EEEecCCeEEEEEcC--CCCce-----EEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001352          486 GAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  557 (1093)
Q Consensus       486 ~~~v~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~--~~~~~-----~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~  557 (1093)
                      ....+.++|++  +++.+ ++.+.++.|.+|+++  ++...     ..+.........++++++|++.++...    .+.
T Consensus       148 ~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~----~~~  221 (297)
T 3g4e_A          148 VDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN----GGR  221 (297)
T ss_dssp             ESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----TTE
T ss_pred             cccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----CCE
Confidence            44567888854  55555 556678999999984  33221     122223346788999999987776643    456


Q ss_pred             EEEEeCCCCeeeeeeecccccCCCeEEEEEc-CCCCEEEEEeC
Q 001352          558 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD  599 (1093)
Q Consensus       558 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~~~  599 (1093)
                      |..||..+|+.+..+..+.   ..+.+++|. |+++.|++++.
T Consensus       222 v~~~d~~tG~~~~~i~~p~---~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          222 VIRLDPVTGKRLQTVKLPV---DKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEECTTTCCEEEEEECSS---SBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEEcCCCceEEEEEECCC---CCceEEEEeCCCCCEEEEEcC
Confidence            9999999999988887664   678999998 88888777654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.29  E-value=1e-10  Score=128.83  Aligned_cols=273  Identities=11%  Similarity=0.015  Sum_probs=175.4

Q ss_pred             CCceeeeecCCCceEEEEEc--cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352          336 SSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  413 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la  413 (1093)
                      ..+..++++|+|+ ++++..  .++.++||.+.+++..   .+.-|..          ...+|-..+..++++++|++++
T Consensus        17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~~----------~~~~~~~~p~gv~~d~~g~L~v   82 (343)
T 2qe8_A           17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQSG----------NAIITFDTVLGIKSDGNGIVWM   82 (343)
T ss_dssp             SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCCS----------SCCCCCSCEEEEEECSSSEEEE
T ss_pred             CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCccc----------CcccceeEeeEEEEcCCCcEEE
Confidence            4789999999998 566653  2343667766555422   2211110          0224667899999999998766


Q ss_pred             EEEc-----CCEEEEEEccCCCcccceEEec----cccccEEEEEeeCCCCcEEEEEEc---CCCcEEEEECCCCceeEE
Q 001352          414 VAYS-----KHIVQLYAYHGGSDARQQLEID----AHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGSRTYS  481 (1093)
Q Consensus       414 s~~~-----d~~i~iwd~~~~~~~~~~~~~~----~h~~~v~~~~~s~d~~~l~l~s~~---~d~~i~vwd~~~~~~~~~  481 (1093)
                      +-..     ++.|.+||+.+++.++.+ .+.    .+...+..+++++++.. ++++..   .++.|.+||+.+++..+.
T Consensus        83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~  160 (343)
T 2qe8_A           83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV  160 (343)
T ss_dssp             EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred             EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence            6544     578999999988744422 221    12345689999987653 456655   678999999999988777


Q ss_pred             eecCCCCeE-EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352          482 FEGHGAPVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  560 (1093)
Q Consensus       482 ~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i  560 (1093)
                      +.+|..... ...+  ..++..+.+.+.+|.++.|.              ..+..++++|||+.|+++...   ...++.
T Consensus       161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~  221 (343)
T 2qe8_A          161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR  221 (343)
T ss_dssp             CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred             ecCCCcccccccce--eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence            765532211 1222  22455677777788876663              135789999999998887642   224655


Q ss_pred             EeCC---CCe-----eeee--eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352          561 WNES---EGA-----IKRT--YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  630 (1093)
Q Consensus       561 wd~~---~~~-----~~~~--~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  630 (1093)
                      ++..   .+.     ....  ..++.   .....++++++|..+++...++.|.+||..+++........ ......+++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va  297 (343)
T 2qe8_A          222 IKSADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFN  297 (343)
T ss_dssp             EEHHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEE
T ss_pred             EEHHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeE
Confidence            5532   111     0111  11222   34567899999998888888999999998666654333321 223467899


Q ss_pred             EecCCCEEEEEECCCeE
Q 001352          631 FNKNGTLLAVIANENRI  647 (1093)
Q Consensus       631 ~s~~~~~l~~~~~dg~i  647 (1093)
                      |.+++.++++....+.+
T Consensus       298 ~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          298 FGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             ECTTSCEEEEECCGGGS
T ss_pred             ECCCCcEEEEeCccccc
Confidence            99998877776654433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.29  E-value=1.5e-10  Score=126.06  Aligned_cols=196  Identities=11%  Similarity=0.005  Sum_probs=128.7

Q ss_pred             eEEEEccCCCEEEEEe---CCeEEE--EEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-----
Q 001352          807 PCFALSKNDAYLFSAS---GGVISL--YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-----  876 (1093)
Q Consensus       807 ~~l~~s~dg~~la~~~---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~-----  876 (1093)
                      ..++++|||++++++.   ++.+.+  +|+.+   +..+.... .   ..+.|++.+.+++.+.||.+.+.++.+     
T Consensus       127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~  199 (368)
T 1mda_H          127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence            3578889998888875   256888  88877   44443211 1   223343455666677888888888886     


Q ss_pred             cceeee----cccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecC------CCcccCCCCceEEEEc
Q 001352          877 SEVISK----LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFH  946 (1093)
Q Consensus       877 ~~~~~~----l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s  946 (1093)
                      ++....    +.-...+.   + ++++..++..+. +.|.+.|+.+........+...      .+...  .....++|+
T Consensus       200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~s  272 (368)
T 1mda_H          200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKL  272 (368)
T ss_dssp             EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEE
T ss_pred             CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEEc
Confidence            544321    11122333   3 677777776677 8999999976432211111111      01000  123337899


Q ss_pred             cCCCEEEEE-e-C--------CeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEEcCCCceE
Q 001352          947 KDQTRFLLV-H-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQ 1014 (1093)
Q Consensus       947 ~dg~~l~~~-~-d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~-~l~t~~-~dg~v~vwd~~~~~~~ 1014 (1093)
                      ||++.+.++ . .        +.+.++|+.+++.+..+..+.  ....++|+|||+ ++++.. .++.|.++|+.+++.+
T Consensus       273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence            999988874 3 2        367799999999988866543  688999999998 566666 5899999999999999


Q ss_pred             EEec
Q 001352         1015 CRIL 1018 (1093)
Q Consensus      1015 ~~~~ 1018 (1093)
                      .++.
T Consensus       351 ~~I~  354 (368)
T 1mda_H          351 SSVE  354 (368)
T ss_dssp             EECC
T ss_pred             EEEE
Confidence            8886

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.29  E-value=1.2e-09  Score=122.70  Aligned_cols=247  Identities=10%  Similarity=-0.004  Sum_probs=164.4

Q ss_pred             CCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCccee
Q 001352          804 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI  880 (1093)
Q Consensus       804 ~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~i~iwd~~~~~~~  880 (1093)
                      .....++++++++++++.. ++.|++||..++......... .... ++|++ +++.|+++..++  .|.+|+..++...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence            3567899999999776665 488999999988776555442 3334 99999 888888888766  7999998766543


Q ss_pred             eec----ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCce-EEEEccCCCEEEEE
Q 001352          881 SKL----EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET-HIQFHKDQTRFLLV  955 (1093)
Q Consensus       881 ~~l----~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~~~  955 (1093)
                      ..+    ..+...+.+++++|++..|..+..++.|+.||..++......... ..+...  .... .++|+|++..|.++
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~--~~P~~~ia~~p~~g~lyv~  284 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG--TNPGPYLIYYFVDSNFYMS  284 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC--CCccccEEEeCCCCEEEEE
Confidence            333    224566788999995555555777889999999876532211110 111111  1113 99999965555543


Q ss_pred             --eCCeEEEEEcCCcceeeeeecCC---------------CCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceEEEe
Q 001352          956 --HETHLAIYEAEELTCLKQWFPIS---------------SVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRI 1017 (1093)
Q Consensus       956 --~d~~i~vwd~~~~~~~~~~~~~h---------------~~~v~~~~fs~dg~~l~t~~-~dg~v~vwd~~~~~~~~~~ 1017 (1093)
                        .++.|+.|+....  +..+. ++               -.....++|+++|.++++-+ .+++|+.|++.++......
T Consensus       285 d~~~~~I~~~~~~g~--~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~  361 (409)
T 3hrp_A          285 DQNLSSVYKITPDGE--CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA  361 (409)
T ss_dssp             ETTTTEEEEECTTCC--EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred             eCCCCEEEEEecCCC--EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence              5678999987643  22211 22               13578999999999888877 7899999998888654332


Q ss_pred             ccccccCCCC-----CCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352         1018 LSTAYLRPTT-----SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus      1018 ~~~~~~~~~~-----~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
                      . ........     ...--.|..++++|+ +.++++-..+++|+.+.+
T Consensus       362 g-~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          362 G-QVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             E-CTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred             C-CCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence            2 10000000     001135778999994 788888888888888765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.29  E-value=1.3e-09  Score=117.22  Aligned_cols=228  Identities=10%  Similarity=0.052  Sum_probs=149.2

Q ss_pred             ceEEEEeecCCceE-EEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCC
Q 001352          737 KISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  815 (1093)
Q Consensus       737 ~i~~l~~s~~g~~l-~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg  815 (1093)
                      -..+..|++++..+ ++...++.|..|+...                      +. .....     ....+.+++++++|
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~-~~~~~-----~~~~~~~i~~~~dG   65 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFT----------------------KQ-VQRVT-----MDAPVSSVALRQSG   65 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTT----------------------CC-EEEEE-----CSSCEEEEEEBTTS
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCC----------------------Cc-EEEEe-----CCCceEEEEECCCC
Confidence            34578889865544 4444567777776432                      22 11111     34568899999999


Q ss_pred             CEEEEEeCCeEEEEEccCceeEEEECC----CCCCeEEEEEcCCCCCEEEEEeCC---------CeEEEEEcCC-cceee
Q 001352          816 AYLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARS-SEVIS  881 (1093)
Q Consensus       816 ~~la~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~d---------g~i~iwd~~~-~~~~~  881 (1093)
                      +++++ .++.|.+||..+++.......    ....+..++++| +++++++....         ..-.||.+.. ++. .
T Consensus        66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~  142 (297)
T 3g4e_A           66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-K  142 (297)
T ss_dssp             SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-E
T ss_pred             CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE-E
Confidence            95554 577899999988765433322    123578899999 88877654321         2334555443 333 2


Q ss_pred             ecccccCCeEEEEEeCCCCEEE-EEeCCCcEEEEeC--CCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eC
Q 001352          882 KLEGHSKRVTGLVFSDALNILV-SSGGDAQIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE  957 (1093)
Q Consensus       882 ~l~~h~~~V~~l~~s~dg~~l~-s~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d  957 (1093)
                      .+..+......++|+||++.|. +.+.++.|.+|++  .++.....+.+.......   ..+..++++++|++.++. ..
T Consensus       143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~  219 (297)
T 3g4e_A          143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNG  219 (297)
T ss_dssp             EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred             EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence            2333445568899999998764 5556788999997  455433323333222211   246789999999988775 46


Q ss_pred             CeEEEEEcCCcceeeeeecCCCCCEEEEEEc-cCCCEEEEEeC
Q 001352          958 THLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFV  999 (1093)
Q Consensus       958 ~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs-~dg~~l~t~~~  999 (1093)
                      +.|.+||..+|+.+..+. .+...+++++|+ ||++.|+.++.
T Consensus       220 ~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          220 GRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TEEEEECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CEEEEEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcC
Confidence            789999999998887754 345689999998 89887765554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.26  E-value=2.5e-10  Score=124.38  Aligned_cols=273  Identities=10%  Similarity=-0.035  Sum_probs=174.7

Q ss_pred             ceEEEEEccCC----cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE-------
Q 001352          348 HTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-------  416 (1093)
Q Consensus       348 ~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~-------  416 (1093)
                      .+++++-..++    +|.+.|..+++.+.....                   ...+  .+++||||++++++.       
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~v-------------------G~~P--~i~~spDg~~lyVan~~~~r~~   90 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG-------------------AFLS--LAVAGHSGSDFALASTSFARSA   90 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-------------------CTTC--EEEECTTSSCEEEEEEEETTTT
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEEEEEeC-------------------CCCC--ceEECCCCCEEEEEcccccccc
Confidence            34566655555    788999999998876332                   2234  799999999999986       


Q ss_pred             ---cCCEEEEEEccCCCcccceEEeccc-----cccEEEEEeeCCCCcEEEEEEc--CCCcEEE--EECCCCceeEEeec
Q 001352          417 ---SKHIVQLYAYHGGSDARQQLEIDAH-----VGNVNDLAFSAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEG  484 (1093)
Q Consensus       417 ---~d~~i~iwd~~~~~~~~~~~~~~~h-----~~~v~~~~~s~d~~~l~l~s~~--~d~~i~v--wd~~~~~~~~~~~~  484 (1093)
                         .++.|.+||..+++.+..+. +.+.     ......++|+|||++  ++.+.  .+..+.+  +|..+   +.++..
T Consensus        91 ~G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v  164 (368)
T 1mda_H           91 KGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKS  164 (368)
T ss_dssp             SSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEEC
T ss_pred             cCCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEEC
Confidence               36789999999998766432 2200     123457999999995  44443  3567888  99877   455532


Q ss_pred             CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC-----CCceE----EecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001352          485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  555 (1093)
Q Consensus       485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~----~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~  555 (1093)
                      - +.   ..+.+.+. ..+++.+.||.+.+.++.+     ++...    .+.....+.   . ++++..++..+.     
T Consensus       165 ~-~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----  230 (368)
T 1mda_H          165 A-SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----  230 (368)
T ss_dssp             S-SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----
T ss_pred             C-Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----
Confidence            1 11   12223322 3455667788888888776     22111    011112222   3 666666665543     


Q ss_pred             eeEEEEeCCCCe--eeeeeecc-------cccCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCceEEEE
Q 001352          556 SFLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD---------DHVIKIWDMNKVQLLTTI  617 (1093)
Q Consensus       556 ~~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~v~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~  617 (1093)
                      +.+.+.|..++.  .+..+...       .........+.++|++++++++..         ++.+.++|+.+++.+..+
T Consensus       231 ~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i  310 (368)
T 1mda_H          231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI  310 (368)
T ss_dssp             SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC
T ss_pred             CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEE
Confidence            348888886532  22222110       000011222689999999887543         235679999999999888


Q ss_pred             ecCCCCCCCceEEEecCCCE-EEEEE-CCCeEEEEEcCCCceeeecccc
Q 001352          618 DAGGGLPENPRICFNKNGTL-LAVIA-NENRIKILETPESNSVDAAGVL  664 (1093)
Q Consensus       618 ~~~~~~~~v~~v~~s~~~~~-l~~~~-~dg~i~iw~~~~~~~~~~~~~~  664 (1093)
                      ....   ....++|+|||++ +++.. .++.|.++|+.+.+.+..+...
T Consensus       311 ~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          311 SNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             ECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence            7654   3688999999984 55555 5899999999999888877644

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.25  E-value=1e-09  Score=118.52  Aligned_cols=237  Identities=11%  Similarity=0.044  Sum_probs=158.6

Q ss_pred             hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352          331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  410 (1093)
Q Consensus       331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~  410 (1093)
                      |..+.......+|+|+|++|++++..++.|..|+. +++.. .                   +..+...+..++++++|+
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~-------------------~~~~~~~~~gl~~d~dG~   98 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-V-------------------LLDATAFTNGNAVDAQQR   98 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-E-------------------EEESCSCEEEEEECTTSC
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-E-------------------EeCCCCccceeeECCCCC
Confidence            44455578899999999988899988999999998 45422 1                   223556789999999999


Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEeccc-cccEEEEEeeCCCCcEEEEE----EcC-------------CCcEEEEE
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CGD-------------DKTIKVWD  472 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s----~~~-------------d~~i~vwd  472 (1093)
                      ++++...++.|.+|+.. ++.........+. ...+.++++.++|+  +.+|    |..             .+.|..||
T Consensus        99 l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d  175 (305)
T 3dr2_A           99 LVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLP  175 (305)
T ss_dssp             EEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred             EEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEc
Confidence            77766666789999986 4421111111111 23467899999998  6665    332             25688888


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecC------CeEEEEEcCCCCc---eEEecCCCCceEEEEEccCCC
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGR  543 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d~~  543 (1093)
                      ..+++.....  .....+.++|+  +|+..|+.+...      +.|.+|++.....   .............++++++|+
T Consensus       176 ~~~g~~~~~~--~~~~p~gl~~s--pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~  251 (305)
T 3dr2_A          176 PDGSPLQRMA--DLDHPNGLAFS--PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW  251 (305)
T ss_dssp             SSSCCCEEEE--EESSEEEEEEC--TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC
T ss_pred             CCCCcEEEEe--cCCCCcceEEc--CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC
Confidence            7777655433  33456778884  466667666654      7899999875431   111122233456789999999


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001352          544 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD  607 (1093)
Q Consensus       544 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd  607 (1093)
                      +.++. .    + .|.+|+. .++.+..+....    .+..++|+++++.|++++.++ ++.++
T Consensus       252 lwv~~-~----~-gv~~~~~-~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          252 LWSSS-G----T-GVCVFDS-DGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             EEECC-S----S-EEEEECT-TSCEEEEEECSS----CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             EEEec-C----C-cEEEECC-CCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            55543 2    2 3999998 566666666543    478899999998888888754 44333

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.24  E-value=3.1e-10  Score=124.91  Aligned_cols=272  Identities=7%  Similarity=0.001  Sum_probs=175.4

Q ss_pred             cceEEEEeecCCceEEEeec--cceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc
Q 001352          736 NKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  813 (1093)
Q Consensus       736 ~~i~~l~~s~~g~~l~~~~~--dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  813 (1093)
                      .....++++++|+.+++...  ++.++||.+.....            .-|-  +..      ....++-..+..+++++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~------------~~~p--~~~------~~~~~~~~~p~gv~~d~   76 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL------------IPFP--PQS------GNAIITFDTVLGIKSDG   76 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE------------EESC--CCC------SSCCCCCSCEEEEEECS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe------------ecCC--Ccc------cCcccceeEeeEEEEcC
Confidence            46788999999998777542  34367777641110            0010  000      00112566889999999


Q ss_pred             CCCEEEEEe------CCeEEEEEccCceeEEEECCC------CCCeEEEEEcCCCCCEEEEEe---CCCeEEEEEcCCcc
Q 001352          814 NDAYLFSAS------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGM---DDSTILIYNARSSE  878 (1093)
Q Consensus       814 dg~~la~~~------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~---~dg~i~iwd~~~~~  878 (1093)
                      +|+++++-.      ++.|.+||+.+++.+..+..+      ...+..++++++++..+++..   .++.|.+||+.+++
T Consensus        77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~  156 (343)
T 2qe8_A           77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL  156 (343)
T ss_dssp             SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred             CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence            998776553      368999999999877766432      235689999983455555555   67899999999988


Q ss_pred             eeeecccccCCeE-EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEe-
Q 001352          879 VISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-  956 (1093)
Q Consensus       879 ~~~~l~~h~~~V~-~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-  956 (1093)
                      ....+.+|..... ...++++|..+.+.+.++.++.|..                      .+..++|+|||+.|.++. 
T Consensus       157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~  214 (343)
T 2qe8_A          157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPM  214 (343)
T ss_dssp             EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEES
T ss_pred             EEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeC
Confidence            8777766533211 1455668888888888887766531                      256799999999888753 


Q ss_pred             CC-eEEEEEcCC---cc-----eeee-eecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCC
Q 001352          957 ET-HLAIYEAEE---LT-----CLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1026 (1093)
Q Consensus       957 d~-~i~vwd~~~---~~-----~~~~-~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 1026 (1093)
                      .+ .+..++...   +.     .... ...++......++++++|.++++...++.|.+||..+++......    .+  
T Consensus       215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~--  288 (343)
T 2qe8_A          215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DE--  288 (343)
T ss_dssp             SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CG--
T ss_pred             CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CC--
Confidence            33 455555321   10     0000 011233456678999999999999889999999996665432222    11  


Q ss_pred             CCCCccceeEEEeCCCCCCEEEEEeCCCcEEEE
Q 001352         1027 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1059 (1093)
Q Consensus      1027 ~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w 1059 (1093)
                         ...++..++++| ++.++++....+.+.+|
T Consensus       289 ---~~~~p~~va~~~-~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          289 ---KLSWTDSFNFGS-DGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             ---GGSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred             ---ceecCCeeEECC-CCcEEEEeCcccccccc
Confidence               123566788988 57888887766555444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.24  E-value=4.4e-10  Score=136.40  Aligned_cols=245  Identities=10%  Similarity=0.071  Sum_probs=159.5

Q ss_pred             CCCCCeEEEEECCCCCEEEEEEc-----CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC---
Q 001352          395 DPGVSVNRVVWSPDGSLLGVAYS-----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK---  466 (1093)
Q Consensus       395 ~h~~~V~~v~~s~dg~~las~~~-----d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~---  466 (1093)
                      +|...+..++|||||++||.+..     ...|++||+.+|+.+..  .+.+  .....++|+ ||+  .|+.++.+.   
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~~  198 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPDG  198 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCccc
Confidence            46667889999999999996532     24799999999874432  1211  113578999 999  455555553   


Q ss_pred             ----------cEEEEECCCCce----eEEeec-CCCCeEEeeecccCCccEEEEEec----CCeEEEEEcCCCC-ceEEe
Q 001352          467 ----------TIKVWDAVTGSR----TYSFEG-HGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-ARVDY  526 (1093)
Q Consensus       467 ----------~i~vwd~~~~~~----~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~-~~~~~  526 (1093)
                                .|++|++.++..    +..... |...+..+.+  ++||++|+....    ++.|.++|+.+.. ....+
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l  276 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV  276 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred             ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence                      499999988753    222233 4445666777  557777755433    2479999988764 33444


Q ss_pred             cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee--eeeeecccccCCCeEEEEEcCCCCEEEEEeCCC---
Q 001352          527 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---  601 (1093)
Q Consensus       527 ~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg---  601 (1093)
                      ..+....... ++++|..++..+........|..+|+.++..  .+.+..+.   ..+.  .|++++++|+....++   
T Consensus       277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~  350 (693)
T 3iuj_A          277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATA  350 (693)
T ss_dssp             ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEE
T ss_pred             eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCee
Confidence            4444444444 6788887776665433357899999988754  34454444   3343  8889999888765443   


Q ss_pred             cEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC----CeEEEEEcCCCc
Q 001352          602 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN  656 (1093)
Q Consensus       602 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iw~~~~~~  656 (1093)
                      .|++|++.++ ....+.... ...+..+.+++++..++....+    +++..||+.+++
T Consensus       351 ~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          351 RVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            6889998754 444554332 1234556677888877766554    789999987664

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.22  E-value=5.6e-09  Score=125.16  Aligned_cols=228  Identities=14%  Similarity=0.124  Sum_probs=151.0

Q ss_pred             CCeEEEEEccCceeEEEECCCCC--------------------------------CeEEEEEcCCCCCEEEEEeCCC---
Q 001352          823 GGVISLYIVMTFKTILTIMPPSP--------------------------------TATSLAFNPHDNNVIAIGMDDS---  867 (1093)
Q Consensus       823 dg~i~iwd~~~~~~~~~~~~~~~--------------------------------~i~~l~~s~~d~~~lasg~~dg---  867 (1093)
                      ++.|+.+|..+|+.+.++.....                                ....++++| ++.+|+.+..++   
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w  267 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW  267 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence            46677777777777766543211                                113578888 677888887664   


Q ss_pred             ----------------eEEEEEcCCcceeeeccc--cc-------CCeEEEEEeCCC---CEEEEEeCCCcEEEEeCCCC
Q 001352          868 ----------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGW  919 (1093)
Q Consensus       868 ----------------~i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg---~~l~s~s~dg~i~iwd~~~~  919 (1093)
                                      .|..+|..+|+.+..++.  |.       .....+....+|   +.++.++.+|.|.++|..++
T Consensus       268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG  347 (677)
T 1kb0_A          268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG  347 (677)
T ss_dssp             CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence                            599999999999877653  31       122333444577   68999999999999999998


Q ss_pred             ceeeeeeeecC--------CCcc-----------------cC--CCCceEEEEccCCCEEEEE-eC--------------
Q 001352          920 GIQTCRSLQTP--------DGVM-----------------TL--APSETHIQFHKDQTRFLLV-HE--------------  957 (1093)
Q Consensus       920 ~~~~~~~~~~~--------~~~~-----------------~~--~~~v~~~~~s~dg~~l~~~-~d--------------  957 (1093)
                      +..........        .+..                 ..  ...-..++|+|++.++.+. .+              
T Consensus       348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g  427 (677)
T 1kb0_A          348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN  427 (677)
T ss_dssp             CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred             CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence            86432211100        0000                 00  0011367999999988773 21              


Q ss_pred             -----------------------------CeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001352          958 -----------------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1008 (1093)
Q Consensus       958 -----------------------------~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~ 1008 (1093)
                                                   +.|..||+.+|+.+-+..  +..++....++.+|.++++++.||.+++||.
T Consensus       428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~  505 (677)
T 1kb0_A          428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA  505 (677)
T ss_dssp             CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence                                         679999999999876644  3344555667788889999999999999999


Q ss_pred             CCCceEEEeccccccCCCCCCCccceeEEEeCCCCCC-EEEEEeC----------------CCcEEEEecCC
Q 001352         1009 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT-QFAVGLT----------------NGEVYVIEPNE 1063 (1093)
Q Consensus      1009 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~-~l~~~~~----------------dg~v~~w~~~~ 1063 (1093)
                      .+|+.+.++....    +     +...-+.|.+ +|+ ++++.+.                .+.+.+|.+..
T Consensus       506 ~tG~~lw~~~~~~----~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          506 ATGEKLWEAPTGT----G-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             TTCCEEEEEECSS----C-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             CCCceeeeeeCCC----C-----cccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence            9999999887322    1     2222244544 354 4444333                47899999873

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.21  E-value=4.4e-09  Score=114.64  Aligned_cols=225  Identities=13%  Similarity=0.022  Sum_probs=149.7

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  416 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~  416 (1093)
                      -..+.+|+|++..+++++..++.|..||..+++...                    + .....|.+++|+|+|+++++. 
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~-  107 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS-  107 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence            346789999877788888888999999998875432                    1 123579999999999887764 


Q ss_pred             cCCEEEEEEccCCCcccceEEec-c-ccccEEEEEeeCCCCcEEEEEEcC------CCcEEEEECCCCceeEEeecCCCC
Q 001352          417 SKHIVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAP  488 (1093)
Q Consensus       417 ~d~~i~iwd~~~~~~~~~~~~~~-~-h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~~~~~~~~~~~h~~~  488 (1093)
                      .+ .|.+||..+++... ..... + ....+.+++++++|+  ++++...      .+.|..++  +++.. .+..+...
T Consensus       108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~  180 (326)
T 2ghs_A          108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI  180 (326)
T ss_dssp             TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred             CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence            44 49999998876321 11111 1 124689999999998  4444332      24455556  55443 33233345


Q ss_pred             eEEeeecccCCccEEE-EEecCCeEEEEEcC--CC-Cc-----eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352          489 VYSLCPHAKENIHFIF-SISVDGKIKAWLYD--SL-GA-----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  559 (1093)
Q Consensus       489 v~~~~~~~~~~~~~l~-s~~~dg~i~vwd~~--~~-~~-----~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~  559 (1093)
                      ...++|+  ++++.++ +.+.++.|.+|+++  ++ ..     ...+.........++++++|++.++...    .+.|.
T Consensus       181 ~~~i~~s--~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~  254 (326)
T 2ghs_A          181 PNSICFS--PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVD  254 (326)
T ss_dssp             EEEEEEC--TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEE
T ss_pred             cCCeEEc--CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEE
Confidence            6778885  4565554 44567899999986  43 21     1122223446778999999987776542    34699


Q ss_pred             EEeCCCCeeeeeeecccccCCCeEEEEEc-CCCCEEEEEeCC
Q 001352          560 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDD  600 (1093)
Q Consensus       560 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~~~d  600 (1093)
                      .||. +++.+..+....   ..+.+++|+ ++++.|++++..
T Consensus       255 ~~d~-~g~~~~~i~~~~---~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          255 RYDT-DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EECT-TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEEBC
T ss_pred             EECC-CCCEEEEEECCC---CCcEEEEEecCCCCEEEEEecC
Confidence            9998 577766666544   578999998 888877665543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.18  E-value=1.8e-05  Score=93.07  Aligned_cols=519  Identities=8%  Similarity=-0.018  Sum_probs=270.8

Q ss_pred             CCEEEEEEccCCC-cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce-eEEeecCCCCeEEeeec
Q 001352          418 KHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPH  495 (1093)
Q Consensus       418 d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~  495 (1093)
                      ...|+..++.... ...   .+...-.....++|++.+.. ++++-...+.|..+++..... ...+...-.....+++.
T Consensus        17 ~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD   92 (619)
T 3s94_A           17 RRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD   92 (619)
T ss_dssp             SSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred             cccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence            4457777776542 111   12223445778999997774 455555677899999776532 22333333567788886


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecc
Q 001352          496 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  575 (1093)
Q Consensus       496 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  575 (1093)
                      +. ++.+.++-...+.|.+.+++...........-.....+++.|.+..|+.....  ....|...++..... ..+...
T Consensus        93 ~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~-~~l~~~  168 (619)
T 3s94_A           93 WL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSR-FIIINS  168 (619)
T ss_dssp             TT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSC-EEEECS
T ss_pred             ec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCce-EEEEeC
Confidence            53 33566666778899999988665544444444567789999986666665421  134577777654332 222211


Q ss_pred             cccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352          576 QLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  654 (1093)
Q Consensus       576 ~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  654 (1093)
                      .  ......++++++++.|+.+ ...+.|...|+............  ......+++..+ ..+++-...+.|...+..+
T Consensus       169 ~--~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~t  243 (619)
T 3s94_A          169 E--IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYT  243 (619)
T ss_dssp             S--CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSS
T ss_pred             C--CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCC
Confidence            1  2467899999987777665 45678999988764443333211  122457777665 4444444578899989877


Q ss_pred             Cceeeecccccccceeeeec-CCCceee--ee----ccCCceEecCCCCCCCccceeecccccceecceeeccCcccccc
Q 001352          655 SNSVDAAGVLSDNLRKLSVN-PISTVTG--AG----IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL  727 (1093)
Q Consensus       655 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~--~~----~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~  727 (1093)
                      ++....+.........+++. +.....+  .+    .....+.+.   +|......+...+|..                
T Consensus       244 g~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~---~~~~~~~~C~C~~g~~----------------  304 (619)
T 3s94_A          244 GEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLM---SPVKPFYQCACPTGVK----------------  304 (619)
T ss_dssp             CCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEE---CSSTTSEEEECCTTCC----------------
T ss_pred             CcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEEC---CCCCCCceEeCCchhe----------------
Confidence            76555444332223333332 1110000  00    000001110   0000000000000000                


Q ss_pred             ccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCee
Q 001352          728 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  807 (1093)
Q Consensus       728 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  807 (1093)
                       +.    ....+|.   +..+.++..+..+.++..++.....                    . .....+.   .-..+.
T Consensus       305 -l~----~d~~~C~---~~~~~~Ll~~~~~~i~~i~l~~~~~--------------------~-~~~~~~~---~l~~~~  352 (619)
T 3s94_A          305 -LL----ENGKTCK---DGATELLLLARRTDLRRISLDTPDF--------------------T-DIVLQLE---DIRHAI  352 (619)
T ss_dssp             -BC----TTSSCBC---SSCSEEEEEEESSCEEEEESSSTTC--------------------C-CEECCCS---CCSSEE
T ss_pred             -ec----ccCcccC---CCCceEEEEEcccceEEEecCCCcc--------------------c-eeEEecc---ccCccE
Confidence             00    0000000   0111223333344455444332110                    0 0011111   234567


Q ss_pred             EEEEccCCCEEEEEe--CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec-c
Q 001352          808 CFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-E  884 (1093)
Q Consensus       808 ~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l-~  884 (1093)
                      +++|.+.+..|..++  .+.|..+++........+...-.....+|+.+.++++..+-+..+.|.+.++.... ...+ .
T Consensus       353 ~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~  431 (619)
T 3s94_A          353 AIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILIS  431 (619)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC
T ss_pred             EEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEE
Confidence            899998777676665  57899998875444333443345677899986355566666667899999987543 3333 2


Q ss_pred             cccCCeEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE--eCCeE
Q 001352          885 GHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHL  960 (1093)
Q Consensus       885 ~h~~~V~~l~~s~dg~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~i  960 (1093)
                      ..-....++++.|....|..+.  ....|...+++......  ..   ....   .....+++++++..|..+  ..+.|
T Consensus       432 ~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~--l~---~~~l---~~P~GlalD~~~~~LY~aD~~~~~I  503 (619)
T 3s94_A          432 EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV--LV---NTSL---GWPNGLALDYDEGKIYWGDAKTDKI  503 (619)
T ss_dssp             TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EE---CSSC---SCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE--EE---eCCC---CCCeeeEEcccCCEEEEEECCCCEE
Confidence            3345688999999744444443  23567777776533211  11   1111   257789999988887775  44678


Q ss_pred             EEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001352          961 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus       961 ~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
                      ..+++.... ...+....-....+++...+ .+.++-...+.|...+..+|
T Consensus       504 ~~~~~dG~~-~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          504 EVMNTDGTG-RRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             EEEESSSCC-CEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred             EEEecCCCc-eEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence            888886433 33332222222334555433 44444445567777777776

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.18  E-value=7e-09  Score=124.34  Aligned_cols=333  Identities=10%  Similarity=0.051  Sum_probs=188.8

Q ss_pred             cEEEEEecCCeEEEEEcCCCCceEEecCCCCc-----------eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeee
Q 001352          501 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  569 (1093)
Q Consensus       501 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-----------v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~  569 (1093)
                      ..++.++.++.|..+|..+++.+..+......           ...+++  ++..+++++.    ++.|+.+|..+|+.+
T Consensus        78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~----dg~l~alD~~tG~~~  151 (677)
T 1kb0_A           78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW----DGRLIALDAATGKEV  151 (677)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence            36777778889999999998888877654321           112233  4556666654    667999999999998


Q ss_pred             eeeecc-ccc-CCCeEE-EEEcCCCCEEEEEeC------CCcEEEEECCCCceEEEEecCCCC-----------------
Q 001352          570 RTYQGL-QLQ-HNSVSV-VHFDTAKDQILAAGD------DHVIKIWDMNKVQLLTTIDAGGGL-----------------  623 (1093)
Q Consensus       570 ~~~~~~-~~~-~~~v~~-v~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~-----------------  623 (1093)
                      -.+... ... ...+.+ ...  .+..+++++.      +|.|+.||..+|+.+..+......                 
T Consensus       152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w  229 (677)
T 1kb0_A          152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW  229 (677)
T ss_dssp             EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred             eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence            777654 100 011111 111  2345666543      799999999999999887653221                 


Q ss_pred             -------------CCCceEEEecCCCEEEEEECCCe-------------------EEEEEcCCCceeeecccccccceee
Q 001352          624 -------------PENPRICFNKNGTLLAVIANENR-------------------IKILETPESNSVDAAGVLSDNLRKL  671 (1093)
Q Consensus       624 -------------~~v~~v~~s~~~~~l~~~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~i~~~  671 (1093)
                                   .....++++|++.++++++.++.                   |..+|..+++.....+.....    
T Consensus       230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d----  305 (677)
T 1kb0_A          230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGD----  305 (677)
T ss_dssp             CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC----
T ss_pred             cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCc----
Confidence                         01135788998888888877653                   555555555443332211000    


Q ss_pred             eecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCC---c
Q 001352          672 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG---Q  748 (1093)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g---~  748 (1093)
                                                               .||..                ......-+....+|   .
T Consensus       306 -----------------------------------------~wd~~----------------~~~~p~l~~~~~dG~~~~  328 (677)
T 1kb0_A          306 -----------------------------------------NWDYT----------------STQPMILADIKIAGKPRK  328 (677)
T ss_dssp             -----------------------------------------CSCCC----------------CCSCCEEEEEEETTEEEE
T ss_pred             -----------------------------------------ccccc----------------cCCCcEEEecccCCcEee
Confidence                                                     11110                00011111222345   4


Q ss_pred             eEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceee----------ccCCCCCCCCCeeEEEEccCCCEE
Q 001352          749 AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV----------NDTTDSNSQEAVPCFALSKNDAYL  818 (1093)
Q Consensus       749 ~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~l~~s~dg~~l  818 (1093)
                      .++.++.+|.+.++|....+..............-+| .++.....          ...++..-...-..++|+|++.++
T Consensus       329 ~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d-~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~  407 (677)
T 1kb0_A          329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD-KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (677)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC-TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             EEEEECCCCEEEEEECCCCCEeccccccccCcccccC-CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence            5666666677766665444321110000000000011 11211110          001100001111367889988877


Q ss_pred             EEEeC--------------------------------------------CeEEEEEccCceeEEEECCCCCCeEEEEEcC
Q 001352          819 FSASG--------------------------------------------GVISLYIVMTFKTILTIMPPSPTATSLAFNP  854 (1093)
Q Consensus       819 a~~~d--------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~  854 (1093)
                      .+...                                            |.|..||+.+++.+.++.. ...+....++.
T Consensus       408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~  486 (677)
T 1kb0_A          408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT  486 (677)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEE
T ss_pred             EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEe
Confidence            76431                                            6799999999999888763 33344455666


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCcceeeeccccc-CCeEEEEEeCCCCEEEEE
Q 001352          855 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVSS  905 (1093)
Q Consensus       855 ~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l~s~  905 (1093)
                       ++.++++++.||.+++||..+|+.+..+.... ....-+.|+.+|+.++..
T Consensus       487 -~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          487 -AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             -TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             -CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence             56688889999999999999999998887432 233346677888765543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.18  E-value=4.2e-10  Score=122.68  Aligned_cols=177  Identities=12%  Similarity=0.041  Sum_probs=133.3

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCc--------ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352          398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  469 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~--------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  469 (1093)
                      .+++.+++++...++++|+.++ +++|++.....        .... ....+.. |+.++|  |++  +|+++ .++.|+
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~  109 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALY  109 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEE
Confidence            3789999999999999999986 77799764320        1111 1224666 999999  888  67777 789999


Q ss_pred             EEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001352          470 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  549 (1093)
Q Consensus       470 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~  549 (1093)
                      +||+.+.........|..++.++.+.+.    .+++++.||.|.+||+.......    ....|++++|||+|  ++.+.
T Consensus       110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~  179 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL  179 (388)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE
T ss_pred             EEEchhhhccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE
Confidence            9999887776677778888888776432    28889999999999998776543    33589999999999  45555


Q ss_pred             cCCCCceeEEEEeCCCCee--eeeeecc------cccCCCeEEEEEcCCCCEEEE
Q 001352          550 TSKEGESFLVEWNESEGAI--KRTYQGL------QLQHNSVSVVHFDTAKDQILA  596 (1093)
Q Consensus       550 ~~~~~~~~i~iwd~~~~~~--~~~~~~~------~~~~~~v~~v~~~~~~~~l~~  596 (1093)
                      .    ++.+++|+...+..  .+++...      ..+...|.++.|.+++.++++
T Consensus       180 ~----dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          180 K----DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             T----TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             c----CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            4    56699999888775  5555211      112478999999999888776

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.17  E-value=1e-08  Score=123.29  Aligned_cols=383  Identities=10%  Similarity=0.101  Sum_probs=216.0

Q ss_pred             EEEEEcCCCcEEEEECCCCceeEEeecCCCC----------e-EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001352          458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY  526 (1093)
Q Consensus       458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~----------v-~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  526 (1093)
                      .++.++.++.|..+|..+|+.+.++......          + ..+++    .+..++.++.|+.|..+|..+++.+..+
T Consensus        72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            4667777889999999999999887543221          0 11111    2347888999999999999999988776


Q ss_pred             cCC-C-CceEEEEEcc---CCCEEEEEecCC--CCceeEEEEeCCCCeeeeeeeccc-----------------------
Q 001352          527 DAP-G-LGCTRMAYSA---NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQ-----------------------  576 (1093)
Q Consensus       527 ~~~-~-~~v~~~~~s~---d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~-----------------------  576 (1093)
                      ... . .....+..+|   ++. ++++....  ..++.|+.||..+|+.+-.+....                       
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  226 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA  226 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred             cCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence            553 1 1111111122   444 44443211  136789999999999876664211                       


Q ss_pred             -----ccCCCeEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceEEEEecCCCC-------CC
Q 001352          577 -----LQHNSVSVVHFDTAKDQILAAGDDHV-------------------IKIWDMNKVQLLTTIDAGGGL-------PE  625 (1093)
Q Consensus       577 -----~~~~~v~~v~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~  625 (1093)
                           ........++++|++..++.++.++.                   |..||..+|+.+..+....+.       ..
T Consensus       227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~  306 (689)
T 1yiq_A          227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH  306 (689)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence                 00011135788898899999887764                   999999999999887653221       01


Q ss_pred             CceEEEecCCC---EEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccc
Q 001352          626 NPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  702 (1093)
Q Consensus       626 v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  702 (1093)
                      ........+|+   .++.++.+|.++++|..+++.+......... ....+.+         ..            +.-+
T Consensus       307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~~~---------~~------------~~pi  364 (689)
T 1yiq_A          307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS-WTKGMDM---------KT------------GRPI  364 (689)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS-SEEEEET---------TT------------TEEE
T ss_pred             cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc-cccccCc---------cC------------CCcc
Confidence            11112223565   7888999999999999999877543321100 0000000         00            0000


Q ss_pred             eeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCc
Q 001352          703 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  782 (1093)
Q Consensus       703 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  782 (1093)
                      ...    .. .|..    +.....+..|.......-..++|+|+...+++...+....++......              
T Consensus       365 ~~~----~~-~~~~----~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~--------------  421 (689)
T 1yiq_A          365 LDE----EN-AAYW----KNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP--------------  421 (689)
T ss_dssp             ECH----HH-HCTT----TSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC--------------
T ss_pred             cch----hh-cccc----CCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc--------------
Confidence            000    00 0000    000011122222223334458999998888887776544443221100              


Q ss_pred             ccCCCCCCceeeccCCCCCCCCCeeEEEEccC---CCEEEEE-eCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCC
Q 001352          783 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN---DAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN  858 (1093)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d---g~~la~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~  858 (1093)
                      .|....+. .         .....  +...|.   +...... .+|.|..||+.+|+.+.++..+.. ...-.++. .+.
T Consensus       422 ~~~~~~~~-~---------~~g~~--~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agg  487 (689)
T 1yiq_A          422 KRNPFKSM-Y---------QLGLR--TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGN  487 (689)
T ss_dssp             CCCSCTTS-C---------CCSSE--ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTT
T ss_pred             cccccccc-c---------ccCcc--ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceE-CCC
Confidence            01111000 0         00000  000000   0000000 137899999999999888764432 23334555 566


Q ss_pred             EEEEEeCCCeEEEEEcCCcceeeecccccCC-eEEEEEeCCCCEEEE
Q 001352          859 VIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS  904 (1093)
Q Consensus       859 ~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~l~s  904 (1093)
                      ++++|+.||.++.||.++|+.+.+++...+. ..-+.|+.||+..+.
T Consensus       488 lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          488 LVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            8899999999999999999999888754332 234677888875443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.17  E-value=6.4e-09  Score=124.94  Aligned_cols=167  Identities=16%  Similarity=0.185  Sum_probs=116.7

Q ss_pred             EEEEcCCCCCEEEEEeCCCe-------------------EEEEEcCCcceeeeccc--cc-------CCeEEEEEeCCCC
Q 001352          849 SLAFNPHDNNVIAIGMDDST-------------------ILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN  900 (1093)
Q Consensus       849 ~l~~s~~d~~~lasg~~dg~-------------------i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~  900 (1093)
                      .++++| +..++++++.++.                   |..+|..+|+.+..++.  |.       .++.......+|+
T Consensus       239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            578888 7778888888764                   99999999999887654  32       1222223333665


Q ss_pred             ---EEEEEeCCCcEEEEeCCCCceeeeeeeec------------------------CCCc-----cc--CCCCceEEEEc
Q 001352          901 ---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT------------------------PDGV-----MT--LAPSETHIQFH  946 (1093)
Q Consensus       901 ---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------------------------~~~~-----~~--~~~~v~~~~~s  946 (1093)
                         .++.++.+|.++++|..+++.........                        ..+.     ..  -...-..++|+
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d  397 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN  397 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence               78899999999999999988652111100                        0000     00  00012347999


Q ss_pred             cCCCEEEEE-e---------------------------------------------CCeEEEEEcCCcceeeeeecCCCC
Q 001352          947 KDQTRFLLV-H---------------------------------------------ETHLAIYEAEELTCLKQWFPISSV  980 (1093)
Q Consensus       947 ~dg~~l~~~-~---------------------------------------------d~~i~vwd~~~~~~~~~~~~~h~~  980 (1093)
                      |+..++.+. .                                             ++.|..||+.+|+.+-+...  ..
T Consensus       398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~  475 (689)
T 1yiq_A          398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--VT  475 (689)
T ss_dssp             TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE--SS
T ss_pred             CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC--CC
Confidence            998888763 1                                             36799999999998776443  23


Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352          981 PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       981 ~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                      ++....++..|.++++++.||.++.||..+|+.+.++.
T Consensus       476 ~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~  513 (689)
T 1yiq_A          476 IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP  513 (689)
T ss_dssp             SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence            33444667788899999999999999999999998887

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.16  E-value=8.2e-08  Score=107.24  Aligned_cols=152  Identities=15%  Similarity=0.061  Sum_probs=99.9

Q ss_pred             EEEEEcCCCcEEEEECCCCceeEEeecCC---------CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001352          458 SVITCGDDKTIKVWDAVTGSRTYSFEGHG---------APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA  528 (1093)
Q Consensus       458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  528 (1093)
                      .++.++.++.|..+|..+|+.+.......         ..+.+..   ..++..++.++.++.|..+|..+++.......
T Consensus        55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV---TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE---EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc---eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            57778888999999999999987765421         2222211   11335788889999999999999988876655


Q ss_pred             CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccC--CCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001352          529 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIW  606 (1093)
Q Consensus       529 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~~~dg~i~iw  606 (1093)
                      ........... + ..+++++.    ++.|+.+|..+|+.+-.+.......  .........  +..+++++.++.+..+
T Consensus       132 ~~~~~~~p~~~-~-~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~  203 (376)
T 3q7m_A          132 AGEALSRPVVS-D-GLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV  203 (376)
T ss_dssp             SSCCCSCCEEE-T-TEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred             CCceEcCCEEE-C-CEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence            43322222222 3 35555543    5679999999998877665432000  000111222  4578888889999999


Q ss_pred             ECCCCceEEEEecC
Q 001352          607 DMNKVQLLTTIDAG  620 (1093)
Q Consensus       607 d~~~~~~~~~~~~~  620 (1093)
                      |..+|+.+......
T Consensus       204 d~~tG~~~w~~~~~  217 (376)
T 3q7m_A          204 LMEQGQMIWQQRIS  217 (376)
T ss_dssp             ETTTCCEEEEEECC
T ss_pred             ECCCCcEEEEEecc
Confidence            99999988776643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.16  E-value=1.3e-08  Score=110.85  Aligned_cols=225  Identities=9%  Similarity=-0.008  Sum_probs=145.0

Q ss_pred             eEEEEeecCCceEE-EeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCC
Q 001352          738 ISRLTYNNGGQAIF-ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  816 (1093)
Q Consensus       738 i~~l~~s~~g~~l~-~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  816 (1093)
                      ..+.+|++++..++ +...++.+..|+....                      . .....     ....+.+++++++|+
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~----------------------~-~~~~~-----~~~~v~~i~~~~dg~  102 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASG----------------------R-KTVHA-----LPFMGSALAKISDSK  102 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTT----------------------E-EEEEE-----CSSCEEEEEEEETTE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCC----------------------c-EEEEE-----CCCcceEEEEeCCCe
Confidence            45678999755444 4445677777764322                      1 11111     234688999999999


Q ss_pred             EEEEEeCCeEEEEEccCceeEEEECCC----CCCeEEEEEcCCCCCEEEEEeC------CCeEEEEEcCCcceeeecccc
Q 001352          817 YLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMD------DSTILIYNARSSEVISKLEGH  886 (1093)
Q Consensus       817 ~la~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~------dg~i~iwd~~~~~~~~~l~~h  886 (1093)
                      ++++. ++.|.+||..+++........    ...+..++++| +++++++...      .+.|..++  +++.. .+..+
T Consensus       103 l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~  177 (326)
T 2ghs_A          103 QLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD  177 (326)
T ss_dssp             EEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE
T ss_pred             EEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC
Confidence            88765 555999999888754333211    23578999999 7887665432      24566666  45443 33334


Q ss_pred             cCCeEEEEEeCCCCEEEEE-eCCCcEEEEeCC--CC-ceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeEE
Q 001352          887 SKRVTGLVFSDALNILVSS-GGDAQIFVWDVD--GW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA  961 (1093)
Q Consensus       887 ~~~V~~l~~s~dg~~l~s~-s~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~  961 (1093)
                      ......++|+|||+.|+.+ +.++.|.+|++.  ++ +......+.......   ..+..++++++|.+.++. .++.|.
T Consensus       178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~  254 (326)
T 2ghs_A          178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVD  254 (326)
T ss_dssp             ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEE
T ss_pred             CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEE
Confidence            4457789999999876554 457889999986  54 322212222221111   235689999999987775 467899


Q ss_pred             EEEcCCcceeeeeecCCCCCEEEEEEc-cCCCEEEEEeCC
Q 001352          962 IYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVD 1000 (1093)
Q Consensus       962 vwd~~~~~~~~~~~~~h~~~v~~~~fs-~dg~~l~t~~~d 1000 (1093)
                      +||. +++.+..+. .+...+++++|+ +|++.|++++..
T Consensus       255 ~~d~-~g~~~~~i~-~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          255 RYDT-DGNHIARYE-VPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EECT-TCCEEEEEE-CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EECC-CCCEEEEEE-CCCCCcEEEEEecCCCCEEEEEecC
Confidence            9998 566665543 345579999998 898877655543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.15  E-value=9.6e-09  Score=110.91  Aligned_cols=231  Identities=14%  Similarity=0.077  Sum_probs=151.6

Q ss_pred             CCCCeEEEEECCCCC-EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC
Q 001352          396 PGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  474 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  474 (1093)
                      ........+|+|+|+ ++++...++.|..|+. +++ ..   .+..+...+..++++++|+  ++++...++.|.+|+..
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECCC
Confidence            445677899999999 5566667789999998 443 22   3445667789999999998  66666666789999975


Q ss_pred             CCceeEEeecC----CCCeEEeeecccCCccEEEE----Eec-------------CCeEEEEEcCCCCceEEecCCCCce
Q 001352          475 TGSRTYSFEGH----GAPVYSLCPHAKENIHFIFS----ISV-------------DGKIKAWLYDSLGARVDYDAPGLGC  533 (1093)
Q Consensus       475 ~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~v  533 (1093)
                       |+........    ...++.+++.  ++|.+.++    |..             .+.|..+|..+++.....  .....
T Consensus       116 -g~~~~~~~~~~~~~~~~~~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p  190 (305)
T 3dr2_A          116 -GQAHLLVGRYAGKRLNSPNDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP  190 (305)
T ss_dssp             -SCEEEEECEETTEECSCCCCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred             -CCEEEEEeccCCCccCCCCCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence             6543222111    1235567774  46677775    321             245667776555544332  33456


Q ss_pred             EEEEEccCCCEEEEEecCC--CCceeEEEEeCCCCeee--eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001352          534 TRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  609 (1093)
Q Consensus       534 ~~~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~  609 (1093)
                      ..++|+||++.|+++....  .+...|+.|++..+...  ..+...  .......++++++|+ +.++..+ .|.+|+. 
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-  265 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-  265 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSC-EEECCSS-EEEEECT-
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCC-EEEecCC-cEEEECC-
Confidence            7899999999887765421  01256999998765411  111111  123456788999998 4444444 4999998 


Q ss_pred             CCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCe
Q 001352          610 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  646 (1093)
Q Consensus       610 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  646 (1093)
                      .++.+..+....   .+.+++|+++++.|++++.++.
T Consensus       266 ~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          266 DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEE
T ss_pred             CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeE
Confidence            577777776553   3789999999999998887643

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.13  E-value=6.2e-08  Score=105.30  Aligned_cols=233  Identities=14%  Similarity=0.089  Sum_probs=151.0

Q ss_pred             EEc--cCCCEEEEEe--CCeEEEEEccCc----eeEEEEC-------CCCCCeEEEEEcCCCCCEEEEEeCC------Ce
Q 001352          810 ALS--KNDAYLFSAS--GGVISLYIVMTF----KTILTIM-------PPSPTATSLAFNPHDNNVIAIGMDD------ST  868 (1093)
Q Consensus       810 ~~s--~dg~~la~~~--dg~i~iwd~~~~----~~~~~~~-------~~~~~i~~l~~s~~d~~~lasg~~d------g~  868 (1093)
                      .++  +++++|.+.+  +++|.++|+.+.    +..+++.       ........+.++| ++ +++++..+      |.
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~  165 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG  165 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence            346  8899998887  588999999765    6666663       1112456788999 78 66665555      78


Q ss_pred             EEEEEcCCcceeeecccccC---CeEEEEEeCCCCEEEEEe-------------------CCCcEEEEeCCCCceeeeee
Q 001352          869 ILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSG-------------------GDAQIFVWDVDGWGIQTCRS  926 (1093)
Q Consensus       869 i~iwd~~~~~~~~~l~~h~~---~V~~l~~s~dg~~l~s~s-------------------~dg~i~iwd~~~~~~~~~~~  926 (1093)
                      |.++|..+++.+.++..-.+   --..+.|+|+++.+++..                   .+.+|.+||+.+++...  .
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t  243 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S  243 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred             EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence            99999999999988873222   234588999999999884                   36789999999864333  2


Q ss_pred             eecCCCcccCCCCceEEEE--ccCCCEEEEE-------eCCeEEEEEcCCcceeeee----ec----C-----------C
Q 001352          927 LQTPDGVMTLAPSETHIQF--HKDQTRFLLV-------HETHLAIYEAEELTCLKQW----FP----I-----------S  978 (1093)
Q Consensus       927 ~~~~~~~~~~~~~v~~~~~--s~dg~~l~~~-------~d~~i~vwd~~~~~~~~~~----~~----~-----------h  978 (1093)
                      +.......    ....+.|  +|+++++.++       -+++|.+|....|+.....    ..    +           -
T Consensus       244 I~vg~~g~----~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~  319 (462)
T 2ece_A          244 LTLGEENR----MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV  319 (462)
T ss_dssp             EESCTTEE----EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred             EecCCCCC----ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence            33321111    2445555  9999998873       3357877666544321110    00    0           0


Q ss_pred             CCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCC---CceEEEeccccccCCCCC----CCccceeEEEeCCCCCCEEEEE
Q 001352          979 SVPISQATFSCDCRMVFTSFV-DGTLSIHEASN---LEVQCRILSTAYLRPTTS----CLHVYPHAIAAHPLKPTQFAVG 1050 (1093)
Q Consensus       979 ~~~v~~~~fs~dg~~l~t~~~-dg~v~vwd~~~---~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~p~d~~~l~~~ 1050 (1093)
                      ......+.+|+||++|.++.. .+.|.++|+..   .+++..+..........|    .....|-.+.++| ||++|.++
T Consensus       320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVa  398 (462)
T 2ece_A          320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVT  398 (462)
T ss_dssp             CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEE
T ss_pred             CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEE
Confidence            235778999999999887765 57899999863   345545442211000000    0011466789999 58888888


Q ss_pred             e
Q 001352         1051 L 1051 (1093)
Q Consensus      1051 ~ 1051 (1093)
                      .
T Consensus       399 N  399 (462)
T 2ece_A          399 N  399 (462)
T ss_dssp             C
T ss_pred             c
Confidence            8

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.13  E-value=6.5e-08  Score=108.03  Aligned_cols=277  Identities=10%  Similarity=0.033  Sum_probs=172.1

Q ss_pred             EEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCC
Q 001352          351 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS  430 (1093)
Q Consensus       351 lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~  430 (1093)
                      +.+++.++.|..+|..+|+.+-...+..       .. .  ........+.+. ...++..+++++.++.|..+|..+|+
T Consensus        56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~-------~~-~--~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~  124 (376)
T 3q7m_A           56 VYAADRAGLVKALNADDGKEIWSVSLAE-------KD-G--WFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGT  124 (376)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCC-------------CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEcCCCeEEEEEccCCceeeeecCcc-------cc-c--cccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCC
Confidence            6667788999999999999875433210       00 0  000001222221 12246678888899999999999997


Q ss_pred             cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCe-----EEeeecccCCccEEEE
Q 001352          431 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----YSLCPHAKENIHFIFS  505 (1093)
Q Consensus       431 ~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~~~l~s  505 (1093)
                      .+..   .............. ++   .++.++.++.|..+|..+|+.+..........     .....    .+..++.
T Consensus       125 ~~W~---~~~~~~~~~~p~~~-~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~----~~~~v~~  193 (376)
T 3q7m_A          125 VAWQ---TKVAGEALSRPVVS-DG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT----AFGAAVV  193 (376)
T ss_dssp             EEEE---EECSSCCCSCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE----ETTEEEE
T ss_pred             EEEE---EeCCCceEcCCEEE-CC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE----ECCEEEE
Confidence            5442   22221111112222 33   47778889999999999999988775432211     11111    1246788


Q ss_pred             EecCCeEEEEEcCCCCceEEecCCCCc----eE---EEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc
Q 001352          506 ISVDGKIKAWLYDSLGARVDYDAPGLG----CT---RMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  576 (1093)
Q Consensus       506 ~~~dg~i~vwd~~~~~~~~~~~~~~~~----v~---~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  576 (1093)
                      ++.+|.+..+|..+++...........    +.   .+...|  .+..+++++.    ++.+..+|..+|+.+-....  
T Consensus       194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~----~g~l~~~d~~tG~~~w~~~~--  267 (376)
T 3q7m_A          194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY----NGNLTALDLRSGQIMWKREL--  267 (376)
T ss_dssp             CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT----TSCEEEEETTTCCEEEEECC--
T ss_pred             EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec----CcEEEEEECCCCcEEeeccC--
Confidence            888999999999988887765533210    00   000111  2445555543    45699999999987755542  


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCc
Q 001352          577 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN  656 (1093)
Q Consensus       577 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~  656 (1093)
                         .....+..  ++..+++++.++.|..+|..+++.+........ ........  .+..+++++.+|.+.++|..+++
T Consensus       268 ---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          268 ---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR  339 (376)
T ss_dssp             ---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred             ---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence               22334433  467888899999999999999998877652211 11223333  25678889999999999999987


Q ss_pred             eeeeccc
Q 001352          657 SVDAAGV  663 (1093)
Q Consensus       657 ~~~~~~~  663 (1093)
                      .+.....
T Consensus       340 ~~~~~~~  346 (376)
T 3q7m_A          340 FVAQQKV  346 (376)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            7665543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.11  E-value=1.1e-08  Score=111.05  Aligned_cols=240  Identities=12%  Similarity=0.069  Sum_probs=154.3

Q ss_pred             eeec--CCCceEEEEEccCCcEEEEecCCC--ceeEEeeeeeeecccccceeeeeee-cCCCCCeEEEEECCCCCEEEEE
Q 001352          341 MDFH--PVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALV-RDPGVSVNRVVWSPDGSLLGVA  415 (1093)
Q Consensus       341 ~~~s--pdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~s~dg~~las~  415 (1093)
                      ..++  +++++|++.|..+++|.|+|+.+.  +......++.-++           . +........+..+||| .++++
T Consensus        87 ~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~-----------~~~~g~s~Ph~~~~~pdG-i~Vs~  154 (462)
T 2ece_A           87 PNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEV-----------KKVSGYSRLHTVHCGPDA-IYISA  154 (462)
T ss_dssp             TTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHH-----------HHHHCEEEEEEEEECSSC-EEEEE
T ss_pred             cccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhc-----------ccccCCCcccceeECCCe-EEEEc
Confidence            3557  999999999999999999999754  2221111100000           0 0011234567889999 66666


Q ss_pred             EcC------CEEEEEEccCCCcccceEEecccc-ccEEEEEeeCCCCcEEEEEEc-------------------CCCcEE
Q 001352          416 YSK------HIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG-------------------DDKTIK  469 (1093)
Q Consensus       416 ~~d------~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~-------------------~d~~i~  469 (1093)
                      ..+      +.|.+.|.++++.+.... ..+.. .--..+.|+|+++  .+++..                   .+.+|.
T Consensus       155 ~g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~  231 (462)
T 2ece_A          155 LGNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIH  231 (462)
T ss_dssp             EEETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEE
T ss_pred             CCCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEE
Confidence            555      789999999987665331 11222 2234588899999  677764                   468999


Q ss_pred             EEECCCCceeEEeecC-C-CCeEEeeecccCCccEEEEEe------cCCeEEEEEcCCCCce--EE--ecCC--------
Q 001352          470 VWDAVTGSRTYSFEGH-G-APVYSLCPHAKENIHFIFSIS------VDGKIKAWLYDSLGAR--VD--YDAP--------  529 (1093)
Q Consensus       470 vwd~~~~~~~~~~~~h-~-~~v~~~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~--~~--~~~~--------  529 (1093)
                      +||+.+++.+.++... . .....+.|..++++++++.++      .+++|.+|..+.+.-.  ..  +...        
T Consensus       232 v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~  311 (462)
T 2ece_A          232 FWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPE  311 (462)
T ss_dssp             EEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCG
T ss_pred             EEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccc
Confidence            9999999888888653 1 234456665577778877776      4568887766542211  11  1110        


Q ss_pred             --------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC---Ceeeeeeeccc-----------ccCCCeEEEEE
Q 001352          530 --------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQ-----------LQHNSVSVVHF  587 (1093)
Q Consensus       530 --------~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~-----------~~~~~v~~v~~  587 (1093)
                              ......+.+|+||++|+++..   +.+.|.+||+..   .+.+..+....           .-.+....+.+
T Consensus       312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~l  388 (462)
T 2ece_A          312 ILKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEI  388 (462)
T ss_dssp             GGGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEE
T ss_pred             cccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEE
Confidence                    234678999999999998875   356799999853   34444443210           00013578899


Q ss_pred             cCCCCEEEEEe
Q 001352          588 DTAKDQILAAG  598 (1093)
Q Consensus       588 ~~~~~~l~~~~  598 (1093)
                      +|||++++++.
T Consensus       389 SpDGk~LyVaN  399 (462)
T 2ece_A          389 SRDGRRVYVTN  399 (462)
T ss_dssp             CTTSSEEEEEC
T ss_pred             cCCCCEEEEEc
Confidence            99999999876

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.09  E-value=6.8e-09  Score=117.01  Aligned_cols=345  Identities=11%  Similarity=0.031  Sum_probs=202.7

Q ss_pred             cEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEe----------cCCe-EEEEEcCCCCceE
Q 001352          456 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------VDGK-IKAWLYDSLGARV  524 (1093)
Q Consensus       456 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~dg~-i~vwd~~~~~~~~  524 (1093)
                      +..+.||+..|.++|+-+.+++.++.+...+..-. .-|-.++....++..+          .+|. ...|         
T Consensus        15 ~~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~-~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~---------   84 (595)
T 1fwx_A           15 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAANGKRIHDN---------   84 (595)
T ss_dssp             EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCC---------
T ss_pred             EEEEeeCCcCceEEEEecCCcceEEEeeeecCCCC-cccCCchhHHHHHhccCCccchhhhhccCceeccc---------
Confidence            34688999999999999999999998863221000 0000000000011000          0110 0000         


Q ss_pred             EecCCCCceEEEEE---ccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEE-c-CCCCEEEEEe-
Q 001352          525 DYDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-D-TAKDQILAAG-  598 (1093)
Q Consensus       525 ~~~~~~~~v~~~~~---s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~-~-~~~~~l~~~~-  598 (1093)
                          ....-..+++   .+||++++++..   .+..|.+.|+.+.+..+.+.-..  ......+++ + |+++++++++ 
T Consensus        85 ----gd~hh~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~  155 (595)
T 1fwx_A           85 ----GDLHHVHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGE  155 (595)
T ss_dssp             ----CCBCCEEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEEC
T ss_pred             ----CCCCccccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEecc
Confidence                0001122333   348999998754   25679999999999888664322  245778887 5 9999999985 


Q ss_pred             -----------------CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeec
Q 001352          599 -----------------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA  661 (1093)
Q Consensus       599 -----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  661 (1093)
                                       .++.+.++|..+.+...++...+.   ...++++|+|+++++.+.+...       ...+...
T Consensus       156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~~~i~~~  225 (595)
T 1fwx_A          156 DETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------GMTLPEM  225 (595)
T ss_dssp             SCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------CSSHHHH
T ss_pred             cccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------Ccchhhc
Confidence                             345799999999999998886542   4678999999999998875321       0000000


Q ss_pred             ccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEE
Q 001352          662 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL  741 (1093)
Q Consensus       662 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l  741 (1093)
                      ..                                          ..-..+.+.+.....                     
T Consensus       226 ~~------------------------------------------~~~d~v~V~~~~~~~---------------------  242 (595)
T 1fwx_A          226 TA------------------------------------------AEMDHIVVFNIAEIE---------------------  242 (595)
T ss_dssp             TC------------------------------------------CSEEEEEEEEHHHHH---------------------
T ss_pred             cc------------------------------------------cccceEEEeecccee---------------------
Confidence            00                                          000111122211000                     


Q ss_pred             EeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCc-eeeccCCCCCCCCCeeEEEEccCCCEEEE
Q 001352          742 TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCFALSKNDAYLFS  820 (1093)
Q Consensus       742 ~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~s~dg~~la~  820 (1093)
                      .+.++|+....    +.+.+.|....+                    +.. .....     -.....++.++|||+++++
T Consensus       243 ~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip-----vg~~PhGv~~sPDGk~v~V  293 (595)
T 1fwx_A          243 KAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP-----IANNPHGCNMAPDKKHLCV  293 (595)
T ss_dssp             HHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE-----EESSCCCEEECTTSSEEEE
T ss_pred             EeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe-----cCCCceEEEEcCCCCEEEE
Confidence            01223332221    335555543210                    111 11111     1224457999999999999


Q ss_pred             Ee--CCeEEEEEccCce------------eEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------
Q 001352          821 AS--GGVISLYIVMTFK------------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------  876 (1093)
Q Consensus       821 ~~--dg~i~iwd~~~~~------------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~----------  876 (1093)
                      ++  +++|.++|+.+.+            ...... -......++|+| +|...++...|+.|.+||+.+          
T Consensus       294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~  371 (595)
T 1fwx_A          294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKV  371 (595)
T ss_dssp             ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSC
T ss_pred             eCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhccccc
Confidence            87  5889999999763            233332 345678999999 776556677899999999987          


Q ss_pred             cceeeecccccCCe-----EEEEEeCCCCEEEEEeC---CCc----------EEEEeCCCCceee
Q 001352          877 SEVISKLEGHSKRV-----TGLVFSDALNILVSSGG---DAQ----------IFVWDVDGWGIQT  923 (1093)
Q Consensus       877 ~~~~~~l~~h~~~V-----~~l~~s~dg~~l~s~s~---dg~----------i~iwd~~~~~~~~  923 (1093)
                      .+.+.++..|-.+-     .++.++|||++|+++..   |+.          -.++|+++++...
T Consensus       372 ~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l  436 (595)
T 1fwx_A          372 DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL  436 (595)
T ss_dssp             CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred             ceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence            45566666554321     22356899999998753   553          2889997766433

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.06  E-value=4.1e-09  Score=115.52  Aligned_cols=293  Identities=12%  Similarity=0.032  Sum_probs=179.6

Q ss_pred             EEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCC
Q 001352          502 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS  581 (1093)
Q Consensus       502 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~  581 (1093)
                      .+..++.++.|..|| .+++...........+.++...++|...+ ++     .. |..+|. +++.+..+....   ..
T Consensus        32 ~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t-----~~-l~~~d~-~g~~~~~~~~~~---~~   99 (330)
T 3hxj_A           32 TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYF-GS-----DK-VYAINP-DGTEKWRFDTKK---AI   99 (330)
T ss_dssp             CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECC-SS-----CE-EEEECC-CGGGGGGSCC-------
T ss_pred             eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEE-ec-----Cc-EEEECC-CCcEEEEEECCC---Cc
Confidence            567777888888998 66665554444444456677777776444 33     33 888886 666554443322   22


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeec
Q 001352          582 VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA  661 (1093)
Q Consensus       582 v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  661 (1093)
                      .....+.  +..+++++.++.|..+|.. ++.........  ..+.++...+++. +.+++.++.+..++.. +......
T Consensus       100 ~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~  172 (330)
T 3hxj_A          100 VSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKK--AIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRF  172 (330)
T ss_dssp             -CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSS--CCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEE
T ss_pred             ccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCC--ceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEE
Confidence            2222333  5678888889999999998 77776665443  2356677777776 5567778899999877 5433322


Q ss_pred             ccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEE
Q 001352          662 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL  741 (1093)
Q Consensus       662 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l  741 (1093)
                      .....                                                                      .+.++
T Consensus       173 ~~~~~----------------------------------------------------------------------~~~~~  182 (330)
T 3hxj_A          173 KTNDA----------------------------------------------------------------------ITSAA  182 (330)
T ss_dssp             ECSSC----------------------------------------------------------------------CCSCC
T ss_pred             ecCCC----------------------------------------------------------------------ceeee
Confidence            21100                                                                      11223


Q ss_pred             EeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE
Q 001352          742 TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA  821 (1093)
Q Consensus       742 ~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~  821 (1093)
                      .+.+++... +++  +.+..++ ..                      +........    ....+.++++.++|.+.+..
T Consensus       183 ~~d~~g~l~-v~t--~~l~~~d-~~----------------------g~~~~~~~~----~~~~~~~~~~~~~g~l~v~t  232 (330)
T 3hxj_A          183 SIGKDGTIY-FGS--DKVYAIN-PD----------------------GTEKWNFYA----GYWTVTRPAISEDGTIYVTS  232 (330)
T ss_dssp             EECTTCCEE-EES--SSEEEEC-TT----------------------SCEEEEECC----SSCCCSCCEECTTSCEEEEE
T ss_pred             EEcCCCEEE-EEe--CEEEEEC-CC----------------------CcEEEEEcc----CCcceeceEECCCCeEEEEc
Confidence            334455533 333  4455444 11                      111111111    23456778888888877766


Q ss_pred             eCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCE
Q 001352          822 SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI  901 (1093)
Q Consensus       822 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~  901 (1093)
                      .++.+..++. +++.+..+......+.++.+.+ ++ .|.+++.+|.|..+|. +++.+..+......+.++...++|++
T Consensus       233 ~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l  308 (330)
T 3hxj_A          233 LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI  308 (330)
T ss_dssp             TTTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE
T ss_pred             CCCeEEEECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE
Confidence            6788888874 5666666655544455566665 55 5666888989999996 67777666555566777888778765


Q ss_pred             EEEEeCCCcEEEEeCCC
Q 001352          902 LVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       902 l~s~s~dg~i~iwd~~~  918 (1093)
                       ..++.+|.+++.....
T Consensus       309 -~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          309 -YFGTRNGKFYALFNLE  324 (330)
T ss_dssp             -EEECTTSCEEEEEC--
T ss_pred             -EEEcCCCeEEEEeccc
Confidence             4578899998887765

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.04  E-value=1e-08  Score=112.37  Aligned_cols=269  Identities=12%  Similarity=0.059  Sum_probs=173.7

Q ss_pred             eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC
Q 001352          339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  418 (1093)
Q Consensus       339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d  418 (1093)
                      ....+..+|.  +..|+.++.|..|| .+|+.+...                   ..+...+.++...++|.+.+ ++.+
T Consensus        23 ~~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~~-------------------~~~~~~~~~~~~~~~g~l~v-~t~~   79 (330)
T 3hxj_A           23 SSPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWFF-------------------KSGEIIECRPSIGKDGTIYF-GSDK   79 (330)
T ss_dssp             CCCEECTTSC--EECSSTTTTTEEEC-TTSCEEESS-------------------CGGGEEEECCEETTTTEECC-SSCE
T ss_pred             cCceEccCCe--EEEEcCCCEEEEEC-CCCcEEEEE-------------------ecCCCcccceEEecCCcEEE-ecCc
Confidence            4556667776  56667788999999 888865431                   11334457777777776444 4444


Q ss_pred             CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccC
Q 001352          419 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE  498 (1093)
Q Consensus       419 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  498 (1093)
                        |..+|. +++.+...   ...........+. ++   .+..++.++.|..+|.. |+.......+...+.++..  .+
T Consensus        80 --l~~~d~-~g~~~~~~---~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~  146 (330)
T 3hxj_A           80 --VYAINP-DGTEKWRF---DTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SE  146 (330)
T ss_dssp             --EEEECC-CGGGGGGS---CC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CT
T ss_pred             --EEEECC-CCcEEEEE---ECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cC
Confidence              888886 55543322   1122222333333 44   46778888999999988 8877777655555555554  32


Q ss_pred             CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccccc
Q 001352          499 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ  578 (1093)
Q Consensus       499 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~  578 (1093)
                      ++ .++.++.++.|..+|.. +.....+......+.++.+.+++...+..       +.|..+| .+++....+....  
T Consensus       147 ~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-------~~l~~~d-~~g~~~~~~~~~~--  214 (330)
T 3hxj_A          147 DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-------DKVYAIN-PDGTEKWNFYAGY--  214 (330)
T ss_dssp             TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-------SSEEEEC-TTSCEEEEECCSS--
T ss_pred             CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-------CEEEEEC-CCCcEEEEEccCC--
Confidence            43 47778888999999988 66666666556667778888888866554       2299999 7776665555433  


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCcee
Q 001352          579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV  658 (1093)
Q Consensus       579 ~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  658 (1093)
                       ..+.++...+++ .+.+++.++.+..+|. +++.+..+.....  .+..+.+.+++ .|.+++.+|.+..++. +++..
T Consensus       215 -~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~  287 (330)
T 3hxj_A          215 -WTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK  287 (330)
T ss_dssp             -CCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred             -cceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence             567778888776 5666777888999974 5666666654332  24456666555 5667888888999986 55544


Q ss_pred             eecc
Q 001352          659 DAAG  662 (1093)
Q Consensus       659 ~~~~  662 (1093)
                      ....
T Consensus       288 ~~~~  291 (330)
T 3hxj_A          288 WNFE  291 (330)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=99.02  E-value=0.00023  Score=89.59  Aligned_cols=619  Identities=10%  Similarity=0.042  Sum_probs=308.5

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC----CCEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLL  412 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d----g~~l  412 (1093)
                      .-+++++-.+|  ++..|+..|.=.+|.+.....-....+.+-         +   --..-++|..++.-..    ...|
T Consensus       328 ~~ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~---------~---~~~N~~PI~D~~v~d~~~~~~~~i  393 (1158)
T 3ei3_A          328 IAECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAM---------E---TFTNLGPIVDMCVVDLERQGQGQL  393 (1158)
T ss_dssp             CCSEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEE---------E---EECCCCSEEEEEEECTTSSSCCEE
T ss_pred             CccEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeE---------e---eecCcCCceeEEEEccCCCCCCeE
Confidence            33566666677  478888877777777764321000000000         0   1113467777776431    2356


Q ss_pred             EEEE---cCCEEEEEEccCCCcccceEEeccccccEEEEEeeC---CCCcEEEEEEcCCCcEEEEECCCCceeEEee--c
Q 001352          413 GVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFE--G  484 (1093)
Q Consensus       413 as~~---~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~--~  484 (1093)
                      ++++   .+|.+++..-.-+-.......+.+ -..++.+....   ...  +|+.+..+.+ .|+.+. ++.+..+.  +
T Consensus       394 ~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~~g  468 (1158)
T 3ei3_A          394 VTCSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETELMG  468 (1158)
T ss_dssp             EEEECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECCTT
T ss_pred             EEEECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCccccccccc
Confidence            5554   467888875443211111112332 24566665432   233  5665555555 455442 22333321  1


Q ss_pred             CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001352          485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  563 (1093)
Q Consensus       485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~  563 (1093)
                      .......++...-+++ .++=.. ...|++.+.........+..+. ..|...+.+.  .+++.+.     .+.+..+++
T Consensus       469 f~~~~~TL~~~~l~~~-~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~~fel  539 (1158)
T 3ei3_A          469 FVDDQQTFFCGNVAHQ-QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALYYLQI  539 (1158)
T ss_dssp             CCSSSCEEEEEEETTT-EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEEEEEE
T ss_pred             ccCCCCcEEEEEcCCC-eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEEEEEe
Confidence            1111111111111111 222222 2335666655444555555443 3566666543  4565553     123667777


Q ss_pred             CCCeeeeeeecccccCCCeEEEEEcCC------CCEEEEEeC-CCcEEEEECCCCceEEEEecCCCCCCCceEEEe--cC
Q 001352          564 SEGAIKRTYQGLQLQHNSVSVVHFDTA------KDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN--KN  634 (1093)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~v~~v~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s--~~  634 (1093)
                      ..++...... .. -...|.|+++.|.      +.++++|.. |++++|+++.+.+.+........ ....++.+.  ..
T Consensus       540 ~~~~L~~~~~-~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~  616 (1158)
T 3ei3_A          540 HPQELRQISH-TE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFES  616 (1158)
T ss_dssp             ETTEEEEEEE-EE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETT
T ss_pred             eCCceeeecc-cC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCC
Confidence            6654332211 11 2367999998864      368888886 99999999998777665554321 123344433  23


Q ss_pred             CCEEEEEECCCeEEEEEcC--CCceeee--cccccccceeeeec----------CCCceeeeeccCCceE----------
Q 001352          635 GTLLAVIANENRIKILETP--ESNSVDA--AGVLSDNLRKLSVN----------PISTVTGAGIANGSVS----------  690 (1093)
Q Consensus       635 ~~~l~~~~~dg~i~iw~~~--~~~~~~~--~~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~----------  690 (1093)
                      ..+|.+|-.||.+.-+.+.  ++.....  ..-...++.-..+.          ...+.+... ..+.+.          
T Consensus       617 ~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~-~~~~l~~s~l~~~~v~  695 (1158)
T 3ei3_A          617 SHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYS-SNHKLVFSNVNLKEVN  695 (1158)
T ss_dssp             EEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEE-SSSSEEEEEBSSSCCC
T ss_pred             CcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEE-cCCceEEeccChHHhc
Confidence            4678899999998766654  3322211  00001111111111          111111111 111111          


Q ss_pred             ----ecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecC
Q 001352          691 ----VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR  766 (1093)
Q Consensus       691 ----~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~  766 (1093)
                          |+....|+|  ++ +..++.+++..++.........+  |   -...+..++++|+.+.++.+..+...  ++...
T Consensus       696 ~~~~F~se~~~~g--~v-~~~~~~LrI~~i~~~~~~~~~~i--p---L~~Tprri~y~~~~~~~~v~~~~~~~--~~~~~  765 (1158)
T 3ei3_A          696 YMCPLNSDGYPDS--LA-LANNSTLTIGTIDEIQKLHIRTV--P---LYESPRKICYQEVSQCFGVLSSRIEV--QDTSG  765 (1158)
T ss_dssp             EEEEECCSSSTTE--EE-EECSSCEEEEEECCSSSEEEEEE--E---CSSEEEEEEEEGGGTEEEEEEEEEEE--ECSSS
T ss_pred             eEeccCcccCCCc--EE-EEcCCceEEEEecccCCeeEEEE--e---CCCCceEEEEcCCCCEEEEEEEeccc--ccccc
Confidence                111111222  22 22345577777643221111111  1   23478899999998877666544211  11100


Q ss_pred             c--c---------------------------cCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEE---EccC
Q 001352          767 N--D---------------------------LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA---LSKN  814 (1093)
Q Consensus       767 ~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~---~s~d  814 (1093)
                      .  .                           ...-+.......+++.|+.+...+...++..   ...+.+++   |..+
T Consensus       766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~---nE~~~sv~~v~~~~~  842 (1158)
T 3ei3_A          766 GTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ---NEYALSLVSCKLGKD  842 (1158)
T ss_dssp             SEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT---TEEEEEEEEECCTTC
T ss_pred             ccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC---CcceEEEEEEEEccC
Confidence            0  0                           0000111123457778888777666666643   34445544   4333


Q ss_pred             -CCEEEEEe-----------CCeEEEEEccCceeEEEEC-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceee
Q 001352          815 -DAYLFSAS-----------GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  881 (1093)
Q Consensus       815 -g~~la~~~-----------dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~  881 (1093)
                       ..++++|.           .|.|.+|++..++...... ...+.+++++--  +|++|| |- ..+|++|++...+.+.
T Consensus       843 ~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla-~i-g~~l~vy~l~~~~~L~  918 (1158)
T 3ei3_A          843 PNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLA-SI-NSTVRLYEWTTEKELR  918 (1158)
T ss_dssp             CCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEE-EE-TTEEEEEEECTTSCEE
T ss_pred             CCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEE-Ec-CCEEEEEECCCCceEE
Confidence             46888775           2569999997554332221 235678887754  455544 33 4789999998655443


Q ss_pred             ecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEE
Q 001352          882 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLA  961 (1093)
Q Consensus       882 ~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~  961 (1093)
                      .-..+-..|..+.....+++++.|..-..|.+...+..+... ..+.. +-..   .+++++.|-.++.++++-.+|.+.
T Consensus       919 ~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L-~~~a~-D~~~---~~vta~~~ld~~t~l~aD~~gNl~  993 (1158)
T 3ei3_A          919 TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNF-EEIAR-DFNP---NWMSAVEILDDDNFLGAENAFNLF  993 (1158)
T ss_dssp             EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEE-EEEEE-CCSC---BCEEEEEEEETTEEEEEETTSEEE
T ss_pred             EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeE-EEEEe-eccc---ccEEEEEEEccCcEEEEcCCCcEE
Confidence            111122224333343457899999888778776654322111 11111 1111   368999998887666666778888


Q ss_pred             EEEcCCc-------ceeeeeecCC-CCCEEEEEE---ccC---------CCEEEEEeCCCcEEEEEcC
Q 001352          962 IYEAEEL-------TCLKQWFPIS-SVPISQATF---SCD---------CRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus       962 vwd~~~~-------~~~~~~~~~h-~~~v~~~~f---s~d---------g~~l~t~~~dg~v~vwd~~ 1009 (1093)
                      +......       +.+.....-| ...|+++.-   .+.         ...++.++.+|.|.+.-.-
T Consensus       994 vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~pl 1061 (1158)
T 3ei3_A          994 VCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSL 1061 (1158)
T ss_dssp             EEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEEE
T ss_pred             EEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEEc
Confidence            8876431       2222211112 556777652   222         2346777888988876443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=99.02  E-value=0.00029  Score=88.62  Aligned_cols=569  Identities=11%  Similarity=0.087  Sum_probs=279.9

Q ss_pred             eEEEEECCCCCEEEEEEcCCEEEEEEccCCCc-----ccceEEeccccccEEEEEeeCCC---CcEEEEEE---cCCCcE
Q 001352          400 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPC---KQISVITC---GDDKTI  468 (1093)
Q Consensus       400 V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~~~~s~d~---~~l~l~s~---~~d~~i  468 (1093)
                      ..++++-.+| +|..|+..|.=.+|.+.....     +....++ ..-++|.+++.....   .. .++++   +.+|.+
T Consensus       329 ~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gsL  405 (1158)
T 3ei3_A          329 AECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGSL  405 (1158)
T ss_dssp             CSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCEE
T ss_pred             ccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCeE
Confidence            3567777655 788888777767777664321     1222233 345689888875421   11 23333   356788


Q ss_pred             EEEECCCC-ceeEE--eecCCCCeEEeeecc-cCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CceEEEEEc--c
Q 001352          469 KVWDAVTG-SRTYS--FEGHGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYS--A  540 (1093)
Q Consensus       469 ~vwd~~~~-~~~~~--~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~s--~  540 (1093)
                      ++..-.-+ +.+..  +. .-..++.+.... +....+|+.+..+.+ +++.+... ........+  .....++..  +
T Consensus       406 ~~lr~Gi~~~~~~~~~l~-gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l~  482 (1158)
T 3ei3_A          406 RIIRNGIGIHEHASIDLP-GIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNVA  482 (1158)
T ss_dssp             EEEEESBCEEEEEEECCC-SCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEET
T ss_pred             EEEecCCCEEEEEeecCC-CccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEcC
Confidence            88742211 11112  22 123445544321 122357777666666 55554321 222221111  111111111  2


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--EEe
Q 001352          541 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TID  618 (1093)
Q Consensus       541 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~  618 (1093)
                      ++ .++=..     ...|++.+...+..+..+....  +..|...+.+.  .+++.++ ++.+.++.+..+++..  ...
T Consensus       483 ~~-~ivQVt-----~~~Irli~~~~~~~~~~w~~p~--~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~  551 (1158)
T 3ei3_A          483 HQ-QLIQIT-----SASVRLVSQEPKALVSEWKEPQ--AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTE  551 (1158)
T ss_dssp             TT-EEEEEE-----SSCEEEEESSSCCEEEEECCTT--CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEE
T ss_pred             CC-eEEEEe-----cCEEEEEECCCCeEEEEEECCC--CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccC
Confidence            22 333333     2237777766555555554433  24566666553  4666665 6788888887664332  222


Q ss_pred             cCCCCCCCceEEEecC------CCEEEEEEC-CCeEEEEEcCCCceeeeccccc-ccceeeeecCCCceeeeeccCCceE
Q 001352          619 AGGGLPENPRICFNKN------GTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVS  690 (1093)
Q Consensus       619 ~~~~~~~v~~v~~s~~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~  690 (1093)
                      .   ...|.|+++.|.      +.++++|.. |++++|+++.+.+.+....-.. ....++.+.               .
T Consensus       552 l---~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~---------------~  613 (1158)
T 3ei3_A          552 M---EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMT---------------T  613 (1158)
T ss_dssp             C---SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEE---------------E
T ss_pred             C---CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEE---------------E
Confidence            2   235888888763      479999997 9999999998655443211110 111111111               0


Q ss_pred             ecCCCCCCCccceeecccccceecceeecc--CccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcc
Q 001352          691 VNEDPKEDVKPEISVEAENKSEVEKPLFAR--PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND  768 (1093)
Q Consensus       691 ~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~  768 (1093)
                      +     ....++..|-.||.+..+.++...  ........+    ...++.=..+...|..-+.+..+.-..++.-.   
T Consensus       614 ~-----~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L----G~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~---  681 (1158)
T 3ei3_A          614 F-----ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL----GTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN---  681 (1158)
T ss_dssp             E-----TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC----CSSCCEEEEEESSSCEEEEEESSSCEEEEESS---
T ss_pred             e-----CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc----CCCceEEEEEeeCCceeEEEECCCCEEEEEcC---
Confidence            1     122445566666665444433211  000000010    11223222333333322222223222222211   


Q ss_pred             cCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeE-EEEccC--CCEEEEEeCCeEEEEEccCce--eEEEECCC
Q 001352          769 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FALSKN--DAYLFSASGGVISLYIVMTFK--TILTIMPP  843 (1093)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~s~d--g~~la~~~dg~i~iwd~~~~~--~~~~~~~~  843 (1093)
                                          +. +....+    ....+.. ..|+..  ..-++..+++.++|..+.+..  .++++. -
T Consensus       682 --------------------~~-l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip-L  735 (1158)
T 3ei3_A          682 --------------------HK-LVFSNV----NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP-L  735 (1158)
T ss_dssp             --------------------SS-EEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE-C
T ss_pred             --------------------Cc-eEEecc----ChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEe-C
Confidence                                00 111111    1112222 234332  134555556668887765322  223332 2


Q ss_pred             CCCeEEEEEcCCCCCEEEEEeCC-------------------------------------------------CeEEEEEc
Q 001352          844 SPTATSLAFNPHDNNVIAIGMDD-------------------------------------------------STILIYNA  874 (1093)
Q Consensus       844 ~~~i~~l~~s~~d~~~lasg~~d-------------------------------------------------g~i~iwd~  874 (1093)
                      ...+..++++| ..+.++++..+                                                 +.|++.|.
T Consensus       736 ~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp  814 (1158)
T 3ei3_A          736 YESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQ  814 (1158)
T ss_dssp             SSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEET
T ss_pred             CCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeC
Confidence            34677788887 55544433211                                                 24677777


Q ss_pred             CCcceeeeccc-ccCCeEEEE---EeCC-CCEEEEEe----------CCCcEEEEeCCCCceeeeeeeecCCCcccCCCC
Q 001352          875 RSSEVISKLEG-HSKRVTGLV---FSDA-LNILVSSG----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS  939 (1093)
Q Consensus       875 ~~~~~~~~l~~-h~~~V~~l~---~s~d-g~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  939 (1093)
                      .+.+.+..++- ....+.+++   |..+ ..+++.|.          ..|.|.++++..++...   +...+-    .+.
T Consensus       815 ~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~l---v~~~~v----~g~  887 (1158)
T 3ei3_A          815 HTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQT---VAEKEV----KGA  887 (1158)
T ss_dssp             TTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEE---EEEEEE----SSC
T ss_pred             CCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEE---EEEEEc----CCc
Confidence            77766554432 222344444   3332 46788775          34789999997543222   211110    135


Q ss_pred             ceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc--CCCceEEEe
Q 001352          940 ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA--SNLEVQCRI 1017 (1093)
Q Consensus       940 v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~--~~~~~~~~~ 1017 (1093)
                      +++++-- +| +|+++-..++++|++...+.++. ...+-..|..+.....|.++++|..-..|.+...  ..+++..--
T Consensus       888 v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~-~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a  964 (1158)
T 3ei3_A          888 VYSMVEF-NG-KLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA  964 (1158)
T ss_dssp             EEEEEEE-TT-EEEEEETTEEEEEEECTTSCEEE-EEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE
T ss_pred             CEEEeee-CC-EEEEEcCCEEEEEECCCCceEEE-EeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE
Confidence            6666533 23 77777789999999986654431 1111112323333345778888887777777554  333333111


Q ss_pred             ccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352         1018 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus      1018 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
                        ..+.       ..+..++.+-.  ...++.+..+|.+++...+.
T Consensus       965 --~D~~-------~~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          965 --RDFN-------PNWMSAVEILD--DDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             --ECCS-------CBCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred             --eecc-------cccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence              1222       23344555542  35889999999999998865

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.99  E-value=2.3e-08  Score=112.72  Aligned_cols=233  Identities=9%  Similarity=0.013  Sum_probs=160.6

Q ss_pred             cCCCEEEEEe--CCeEEEEEccCceeEEEECCC-CCCeEEEEE-c-CCCCCEEEEEe------------------CCCeE
Q 001352          813 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAF-N-PHDNNVIAIGM------------------DDSTI  869 (1093)
Q Consensus       813 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~d~~~lasg~------------------~dg~i  869 (1093)
                      +||+++.+..  +++|.+.|+.+.++.+.+.-. ......+++ + | +++++++++                  .++.+
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence            3899998886  477999999999988855433 346788888 5 8 888888884                  34689


Q ss_pred             EEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCC--------------------------------------cE
Q 001352          870 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA--------------------------------------QI  911 (1093)
Q Consensus       870 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg--------------------------------------~i  911 (1093)
                      .+.|..+.+.+.++.--. ....++++|||+++++++.+.                                      .|
T Consensus       178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            999999998888776322 346688999999999888653                                      35


Q ss_pred             EEEeCCC--CceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcc------------eeeeee
Q 001352          912 FVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT------------CLKQWF  975 (1093)
Q Consensus       912 ~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~------------~~~~~~  975 (1093)
                      .|.|..+  ++.. ...+...       ....++.++|||++++++  .+++|.++|+.+.+            ......
T Consensus       257 ~VID~~~~~~~~~-~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~  328 (595)
T 1fwx_A          257 KVVDGRKEASSLF-TRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  328 (595)
T ss_dssp             EEEECSGGGCCSS-EEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred             EEEeCcccCCcee-EEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence            6666665  2110 1112221       135679999999999985  56789999999763            223322


Q ss_pred             cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC----------CceEEEeccccccCCCCCCCccceeEEEeCCCCCC
Q 001352          976 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1045 (1093)
Q Consensus       976 ~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1045 (1093)
                      .  ......++|++||...++...|+.|.+||+.+          ...+.++.. .+.|.+    ...++..+.+| ||+
T Consensus       329 v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqpGh----~~~~~g~t~~~-DGk  400 (595)
T 1fwx_A          329 L--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQPGH----LKTVMGETLDA-TND  400 (595)
T ss_dssp             C--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCEEE----EEETTTTSTTC-CSS
T ss_pred             C--CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-cccccc----ceeccceEeCC-CCC
Confidence            2  45788999999995556777899999999987          445555542 122111    11223456788 688


Q ss_pred             EEEEEeCCC--cE-----------EEEecCC
Q 001352         1046 QFAVGLTNG--EV-----------YVIEPNE 1063 (1093)
Q Consensus      1046 ~l~~~~~dg--~v-----------~~w~~~~ 1063 (1093)
                      +|+++..-.  ++           +++|++.
T Consensus       401 ~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~  431 (595)
T 1fwx_A          401 WLVCLSKFSKDRFLNVGPLKPENDQLIDISG  431 (595)
T ss_dssp             EEEEEESCCTTSSCCCCSSCCEEEEEEECSS
T ss_pred             EEEEcCCCCccccccCCCCCCCcceEEEcCC
Confidence            888876533  33           8899943

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.97  E-value=6e-10  Score=123.52  Aligned_cols=190  Identities=7%  Similarity=-0.034  Sum_probs=112.4

Q ss_pred             CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC
Q 001352          408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  487 (1093)
Q Consensus       408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~  487 (1093)
                      ++.++++++.|+.|+.||..+|+.+.   .+..  +.+.+..+..++.  ++++++.|+.|+.||..+|+.+..+..+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence            57899999999999999999998655   3333  4555556667776  677788999999999999998877654321


Q ss_pred             CeEEeeecccC-CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352          488 PVYSLCPHAKE-NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  566 (1093)
Q Consensus       488 ~v~~~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~  566 (1093)
                      ....  ..|.- ++..+++++.++.++.||..+++....+..+.    ...++|++..+++++.    ++.|+.||..+|
T Consensus        81 ~~~~--~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG  150 (369)
T 2hz6_A           81 ELVQ--ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR  150 (369)
T ss_dssp             HHHT--TCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred             cccc--cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence            1110  01111 33478888999999999999988877665543    2345678888888765    677999999999


Q ss_pred             eeeeeeecccccCCCeEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceEEEEec
Q 001352          567 AIKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTIDA  619 (1093)
Q Consensus       567 ~~~~~~~~~~~~~~~v~~v~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~  619 (1093)
                      +.+-.+....     .....+.++.   ..+++++.+|.|+.||..+|+.+.....
T Consensus       151 ~~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  201 (369)
T 2hz6_A          151 ELRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY  201 (369)
T ss_dssp             SCCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred             CEEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence            8776654322     1222333332   5678889999999999999998887764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.92  E-value=0.00033  Score=82.44  Aligned_cols=533  Identities=9%  Similarity=-0.012  Sum_probs=277.8

Q ss_pred             eEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-EcCCEEEEEEcc
Q 001352          349 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYH  427 (1093)
Q Consensus       349 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~-~~d~~i~iwd~~  427 (1093)
                      +|+.+  ..+.|+..++.+........                 + ..-..+..++|.+.+..|..+ ..++.|..+++.
T Consensus         8 ~Ll~s--~~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~   67 (628)
T 4a0p_A            8 FLLFS--RRADIRRISLETNNNNVAIP-----------------L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMN   67 (628)
T ss_dssp             EEEEE--ETTEEEEEESSCTTCEEECC-----------------C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEEE--eCCcEEEEECCCCCcceEEE-----------------c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence            44554  44778999988765332111                 1 123468899999977666655 457889999987


Q ss_pred             CCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEE-
Q 001352          428 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-  506 (1093)
Q Consensus       428 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-  506 (1093)
                      .... ..  .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.|. +|.+.++- 
T Consensus        68 g~~~-~~--v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~  142 (628)
T 4a0p_A           68 GSAL-EH--VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW  142 (628)
T ss_dssp             SCSC-EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred             CCCc-EE--EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence            6432 21  22222235678899877665 4566666788999997654432223233445678888654 33344443 


Q ss_pred             ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEE
Q 001352          507 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH  586 (1093)
Q Consensus       507 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~  586 (1093)
                      +..+.|...+++......... .......+++++++..|+.+-.   +.+.|...|+..... ..+....   .....++
T Consensus       143 g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l---~~P~gla  214 (628)
T 4a0p_A          143 GGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDL---PHPFGLT  214 (628)
T ss_dssp             SSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECC---SCEEEEE
T ss_pred             CCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccC---CCceEEE
Confidence            235678888877655444333 3456789999999888887754   255799999875443 3333322   3456777


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE-EecCCCEEEEEECCCeEEEEEcCCCceeeeccccc
Q 001352          587 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKNGTLLAVIANENRIKILETPESNSVDAAGVLS  665 (1093)
Q Consensus       587 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  665 (1093)
                      +.. +..+++-...+.|...|..+++....+.....  ....+. +++..+.   + .           ..+    ....
T Consensus       215 v~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~-~-----------n~C----~~~n  272 (628)
T 4a0p_A          215 QYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G-W-----------NEC----ASSN  272 (628)
T ss_dssp             EET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C-C-----------CTT----TTTG
T ss_pred             EEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c-c-----------eEe----ccCC
Confidence            754 33344444678899999888877666653321  123332 2221110   0 0           000    0000


Q ss_pred             ccceeeeec-CCCceeeeeccCCceE-ecCCC-CCCCccceeecccccceecceeeccCccccccccCccccccceEEEE
Q 001352          666 DNLRKLSVN-PISTVTGAGIANGSVS-VNEDP-KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT  742 (1093)
Q Consensus       666 ~~i~~~~~~-~~~~~~~~~~~~~~~~-~~~~~-s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~  742 (1093)
                      .....+++. |.+...-.+ ..+... -++.. .+...+++.+. ...|+-..+.....   ....++. .....+.+++
T Consensus       273 g~C~~~C~~~~~~~~~C~C-~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~---~~~~l~~-~~~~~~~~ld  346 (628)
T 4a0p_A          273 GHCSHLCLAVPVGGFVCGC-PAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQS---PDIILPI-HSLRNVRAID  346 (628)
T ss_dssp             GGCSSEEEEETTTEEEEEC-STTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCC---CCEECCC-TTCSCEEEEE
T ss_pred             CCcchhhhcCCCCCeeEEc-CCCcEecccCCcCccccceeeeec-cceEEEEecccccC---ceEEEEe-hhcCCceEEE
Confidence            000001110 101000000 000000 00000 01122233222 23344333321110   0111111 1234577899


Q ss_pred             eecCCceEEEeec-cceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE
Q 001352          743 YNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA  821 (1093)
Q Consensus       743 ~s~~g~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~  821 (1093)
                      |.+....|+.+.. .+.|..++......           ..         +......+......+..+|+...++.|..+
T Consensus       347 ~d~~~~~iy~sD~~~~~I~r~~~~g~~~-----------~~---------v~~~~~~~~~~~~~p~glAvD~~~~nLY~t  406 (628)
T 4a0p_A          347 YDPLDKQLYWIDSRQNMIRKAQEDGSQG-----------FT---------VVVSSVPSQNLEIQPYDLSIDIYSRYIYWT  406 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSC-----------EE---------EEC--------CCCEEEEEEETTTTEEEEE
T ss_pred             EecCCCeEEEEecCcceEEEEEcCCCCc-----------eE---------EEEcccccccccCCcceEEeeccCCeEEEE
Confidence            9887665655543 45565554322100           00         100000000023457899999988877766


Q ss_pred             e--CCeEEEEEccCceeEEEE-CCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCcceeeec-ccccCCeEEEEE
Q 001352          822 S--GGVISLYIVMTFKTILTI-MPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKL-EGHSKRVTGLVF  895 (1093)
Q Consensus       822 ~--dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~d~~~lasg~~dg--~i~iwd~~~~~~~~~l-~~h~~~V~~l~~  895 (1093)
                      .  .+.|.+.++. |+....+ .........+++.|..+.++.+-....  .|...+++ |.....+ ...-.....|++
T Consensus       407 d~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~l~~P~gla~  484 (628)
T 4a0p_A          407 CEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSGLSKPIALAL  484 (628)
T ss_dssp             ETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSSCSCEEEEEE
T ss_pred             cCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEeccCCCccEEEE
Confidence            5  4789999986 4444443 334567899999995555555543333  57777766 3333322 323445789999


Q ss_pred             eCCCCEEEEEe-CCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeee
Q 001352          896 SDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ  973 (1093)
Q Consensus       896 s~dg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~  973 (1093)
                      .++++.|..+. ..+.|...++++.....   +..  ...   ....++++.. +.+..+ ...+.|...|..+|+....
T Consensus       485 D~~~~~LYw~D~~~~~I~~~~~dG~~r~~---~~~--~~~---~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~  555 (628)
T 4a0p_A          485 DSRLGKLFWADSDLRRIESSDLSGANRIV---LED--SNI---LQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTK  555 (628)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSCEE---EEC--SSC---SCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEE
T ss_pred             eCCCCEEEEEeCCCCEEEEEeCCCCceEE---EEc--CCC---CCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEE
Confidence            99877766554 45789999997643221   111  111   1245666644 333333 2445677777776665443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.91  E-value=5.3e-10  Score=123.94  Aligned_cols=190  Identities=9%  Similarity=0.056  Sum_probs=108.8

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCccc
Q 001352          856 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT  935 (1093)
Q Consensus       856 d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  935 (1093)
                      ++..|++++.||.|+.||..+|+.+.++..  +.+.+..+..+++.+++++.|+.|+.||..+++.............. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~-   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ-   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence            456888999999999999999999988876  55666666778888888889999999999887643211111000000 


Q ss_pred             CCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceE
Q 001352          936 LAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1014 (1093)
Q Consensus       936 ~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~ 1014 (1093)
                           .+..++.++ .+++ +.++.++.||..+|+.+..+.. +.    ...++|++..+++++.|+.|+.||..+|+.+
T Consensus        85 -----~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A           85 -----ASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             -----TCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred             -----cCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence                 011112344 4444 6789999999999998766432 21    2456778889999999999999999999988


Q ss_pred             EEeccccccCCCCCCCccceeEEEeCCC--CCCEEEEEeCCCcEEEEecCCCCCCcccC
Q 001352         1015 CRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1071 (1093)
Q Consensus      1015 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~~~l~~~~~dg~v~~w~~~~~~~~~~~~ 1071 (1093)
                      .++....+..            .+++++  -...+++++.||.|+.||.......|...
T Consensus       154 W~~~~~~~~~------------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          154 WNATYFDYAA------------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CEEEEEEECC------------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EeEecccccC------------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            7765322111            112220  01467788999999999998888888754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.85  E-value=2.4e-06  Score=102.28  Aligned_cols=376  Identities=13%  Similarity=0.123  Sum_probs=205.3

Q ss_pred             EEEEEcCCCcEEEEECCCCceeEEeecCCCCe-----------EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001352          458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY  526 (1093)
Q Consensus       458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v-----------~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  526 (1093)
                      .++.++.++.|.-+|..+|+.+.++.......           ..+++    .+..++.++.|+.|..+|..+++.+..+
T Consensus        68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            46666778899999999999998775432110           11122    2357888899999999999999988876


Q ss_pred             cCCCCc-eEEEEEcc--CCCEEEEEecCC--CCceeEEEEeCCCCeeeeeeecccc------------------------
Q 001352          527 DAPGLG-CTRMAYSA--NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL------------------------  577 (1093)
Q Consensus       527 ~~~~~~-v~~~~~s~--d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~------------------------  577 (1093)
                      ...... ...+..+|  .+..++++....  ..++.|+.+|..+|+.+-.+.....                        
T Consensus       144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w  223 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW  223 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred             ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence            553210 00011111  133454443221  1257899999999998877653110                        


Q ss_pred             ----cCCCeEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceEEEEecCCCC-------CCCc
Q 001352          578 ----QHNSVSVVHFDTAKDQILAAGDDH-------------------VIKIWDMNKVQLLTTIDAGGGL-------PENP  627 (1093)
Q Consensus       578 ----~~~~v~~v~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~~v~  627 (1093)
                          .......+++.|+...++.++.++                   .|..+|..+|+.+..+....+.       ....
T Consensus       224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~  303 (668)
T 1kv9_A          224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT  303 (668)
T ss_dssp             HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence                001122468888888888887766                   3999999999999888753221       1111


Q ss_pred             eEEEecCCC---EEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCcccee
Q 001352          628 RICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  704 (1093)
Q Consensus       628 ~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  704 (1093)
                      ...+..+|+   .+++++.+|.++++|..+++.+...+..... ....+.+         ..+...+......+++.   
T Consensus       304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~d~---------~~g~p~~~~~~~~~~~~---  370 (668)
T 1kv9_A          304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT-WAEKVDL---------ATGRPVEAPGVRYEKEP---  370 (668)
T ss_dssp             EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC-SEEEECT---------TTCCEEECTTTTCSSSC---
T ss_pred             EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccc-ccccccc---------ccCCccccccccccCCe---
Confidence            122334665   6888999999999999999887554322210 0011110         00000110000000000   


Q ss_pred             ecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCccc
Q 001352          705 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY  784 (1093)
Q Consensus       705 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~  784 (1093)
                                           .+..+.......-..++++|+...+++...+-...... ..               ..|
T Consensus       371 ---------------------~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~-~~---------------~~~  413 (668)
T 1kv9_A          371 ---------------------IVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRN-EG---------------KDF  413 (668)
T ss_dssp             ---------------------EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECC-CG---------------GGC
T ss_pred             ---------------------eEECCCCccccCCCcceECCCCCEEEEeccccceEeee-ec---------------ccc
Confidence                                 00011100111112367888877776665542222110 00               001


Q ss_pred             CCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEE-EEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEE
Q 001352          785 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI  862 (1093)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la-~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las  862 (1093)
                      ....+.  .        ....     +  .+..++ ... +|.|..||+.+|+.+.+...+. ......+.. .+.++++
T Consensus       414 ~~~~~~--~--------~g~~-----~--~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf~  474 (668)
T 1kv9_A          414 VTRKAF--N--------TAAG-----F--ADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQ  474 (668)
T ss_dssp             CCCSSC--C--------CSSC-----G--GGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEE
T ss_pred             cccccc--c--------cCcc-----c--cccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEEE
Confidence            100000  0        0000     0  011111 112 4789999999999887765333 222233334 4568888


Q ss_pred             EeCCCeEEEEEcCCcceeeecccccCCe-EEEEEeCCCC-EEEEEe
Q 001352          863 GMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSSG  906 (1093)
Q Consensus       863 g~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~-~l~s~s  906 (1093)
                      |+.||.++.||..+|+.+..++...+.. .-+.+..+|+ +++.++
T Consensus       475 g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          475 GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             ECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            9999999999999999998876543211 2244455776 444443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.85  E-value=7.4e-06  Score=86.05  Aligned_cols=223  Identities=12%  Similarity=0.045  Sum_probs=143.5

Q ss_pred             CCeEEEEECCCCCEEEEEE-cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC
Q 001352          398 VSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  476 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  476 (1093)
                      ..+..++|++++..|..+. .++.|.+++..++.. ..  .+.........+++.+++.. ++++-...+.|.+++....
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~--~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TT--IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EE--EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EE--EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence            4578899999776666554 567999999987542 21  22222346789999998664 4556666789999997644


Q ss_pred             ceeEEeecCCCCeEEeeecccCCccEEEEEec---CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001352          477 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  553 (1093)
Q Consensus       477 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~  553 (1093)
                      ...............+++++.  +..|+.+..   .+.|..++++.................+++++++..|+.+..   
T Consensus       112 ~~~~~~~~~~~~P~~i~vd~~--~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---  186 (267)
T 1npe_A          112 QRRVLFDTGLVNPRGIVTDPV--RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---  186 (267)
T ss_dssp             SCEEEECSSCSSEEEEEEETT--TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred             CEEEEEECCCCCccEEEEeeC--CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence            322222222245677888543  234444443   468888887654433333233346789999999888877654   


Q ss_pred             CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352          554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  632 (1093)
                      +.+.|..+|...........+.    .....++..  +..++.+. ..+.|.++|..+++.+..+..... +....+++.
T Consensus       187 ~~~~I~~~~~~g~~~~~~~~~~----~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~-~~p~gi~~~  259 (267)
T 1npe_A          187 GTHRAECLNPAQPGRRKVLEGL----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIA  259 (267)
T ss_dssp             TTTEEEEEETTEEEEEEEEECC----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEE
T ss_pred             CCCEEEEEecCCCceEEEecCC----CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccc-cccceeeec
Confidence            2567999998765544333321    234566654  45565554 568999999999999888864421 235788888


Q ss_pred             cCCC
Q 001352          633 KNGT  636 (1093)
Q Consensus       633 ~~~~  636 (1093)
                      |++.
T Consensus       260 ~~~~  263 (267)
T 1npe_A          260 LSQC  263 (267)
T ss_dssp             CSCC
T ss_pred             CccC
Confidence            8764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.83  E-value=1.1e-05  Score=84.83  Aligned_cols=257  Identities=11%  Similarity=0.021  Sum_probs=156.1

Q ss_pred             CCEEEEEEcCCEEEEEEccCCCccc--ceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  486 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~  486 (1093)
                      |.+|..+.. +.|+.+++.+.....  ....+......+..++|++++.. ++++-...+.|.+++...+.....+....
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~   78 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL   78 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred             CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence            345666554 478889987654211  01112222345789999997764 45566667899999987665443333333


Q ss_pred             CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352          487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  566 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~  566 (1093)
                      .....+++.+. ++.+.++....+.|.+++++.................++++|++..|+.+.... ..+.|..+++...
T Consensus        79 ~~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~  156 (267)
T 1npe_A           79 GSPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT  156 (267)
T ss_dssp             CCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC
T ss_pred             CCccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCC
Confidence            46778888543 234555556678999999876544333333334678999999777766654321 1356888887543


Q ss_pred             eeeeeeecccccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEE-CC
Q 001352          567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE  644 (1093)
Q Consensus       567 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d  644 (1093)
                       ....+....  ......+++++++..|+.+ ...+.|.++|..+......+...   .....++..  +..++++. ..
T Consensus       157 -~~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d--~~~lyva~~~~  228 (267)
T 1npe_A          157 -NRRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKT  228 (267)
T ss_dssp             -CCEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTT
T ss_pred             -CcEEEEECC--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe--CCEEEEEECCC
Confidence             223332111  2457889999987777665 45688999999765544444321   123456654  44555444 56


Q ss_pred             CeEEEEEcCCCceeeeccccc-ccceeeeecCCC
Q 001352          645 NRIKILETPESNSVDAAGVLS-DNLRKLSVNPIS  677 (1093)
Q Consensus       645 g~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~  677 (1093)
                      +.|..++..+++.+..+.... .....+++.|..
T Consensus       229 ~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          229 NSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             TEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             CeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence            899999999887776665332 234555555443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.83  E-value=1.4e-06  Score=104.27  Aligned_cols=194  Identities=13%  Similarity=0.142  Sum_probs=129.4

Q ss_pred             CCeEEEEEccCceeEEEECCCC-------------------------------CCeEEEEEcCCCCCEEEEEeCCC----
Q 001352          823 GGVISLYIVMTFKTILTIMPPS-------------------------------PTATSLAFNPHDNNVIAIGMDDS----  867 (1093)
Q Consensus       823 dg~i~iwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~d~~~lasg~~dg----  867 (1093)
                      ++.|..+|..+|+.+.++....                               .....+++.| +..+++.++.++    
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~  255 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN  255 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence            4677778888888777664210                               0112478888 677888888776    


Q ss_pred             ---------------eEEEEEcCCcceeeeccc--cc-------CCeEEEEEeCCCC---EEEEEeCCCcEEEEeCCCCc
Q 001352          868 ---------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWG  920 (1093)
Q Consensus       868 ---------------~i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~---~l~s~s~dg~i~iwd~~~~~  920 (1093)
                                     .|.-+|..+|+.+..++.  |.       .++....+..+|+   .++.++.+|.+.++|..+++
T Consensus       256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence                           399999999999877653  32       2333333444775   68899999999999999988


Q ss_pred             eeeeeeeec---------CCCcc--------c------C-----CCCceEEEEccCCCEEEEE-----------------
Q 001352          921 IQTCRSLQT---------PDGVM--------T------L-----APSETHIQFHKDQTRFLLV-----------------  955 (1093)
Q Consensus       921 ~~~~~~~~~---------~~~~~--------~------~-----~~~v~~~~~s~dg~~l~~~-----------------  955 (1093)
                      .........         ..+..        .      .     ...-..++++|+..++.+.                 
T Consensus       336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~  415 (668)
T 1kv9_A          336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT  415 (668)
T ss_dssp             EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred             EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence            652111000         00000        0      0     0001237889988776651                 


Q ss_pred             --------------------eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEE
Q 001352          956 --------------------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1015 (1093)
Q Consensus       956 --------------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~ 1015 (1093)
                                          .++.|..||+.+|+.+-+...+  .++....+...|.++++++.||.++.||..+|+.+.
T Consensus       416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~  493 (668)
T 1kv9_A          416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW  493 (668)
T ss_dssp             CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC--CCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence                                1267999999999987664432  233334556678899999999999999999999998


Q ss_pred             Eecc
Q 001352         1016 RILS 1019 (1093)
Q Consensus      1016 ~~~~ 1019 (1093)
                      ++..
T Consensus       494 ~~~~  497 (668)
T 1kv9_A          494 QFEA  497 (668)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            8874

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.79  E-value=4.1e-06  Score=97.72  Aligned_cols=166  Identities=14%  Similarity=0.175  Sum_probs=106.2

Q ss_pred             EEEEcCCCCCEEEEEeCC----------------CeEEEEEcCCcceeeeccc--cc--------CCeEEEEEe-CCC--
Q 001352          849 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DAL--  899 (1093)
Q Consensus       849 ~l~~s~~d~~~lasg~~d----------------g~i~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~dg--  899 (1093)
                      .+++.+ ...+++.+..+                +.|.-+|..+|+.+..++.  |.        .++. +... .+|  
T Consensus       245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~  322 (599)
T 1w6s_A          245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA  322 (599)
T ss_dssp             CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred             ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence            356667 55577777655                3899999999999877654  21        1221 2222 567  


Q ss_pred             -CEEEEEeCCCcEEEEeCCCCceeeeeeeec----------CCCccc---------------------CCCCceEEEEcc
Q 001352          900 -NILVSSGGDAQIFVWDVDGWGIQTCRSLQT----------PDGVMT---------------------LAPSETHIQFHK  947 (1093)
Q Consensus       900 -~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~---------------------~~~~v~~~~~s~  947 (1093)
                       +.++.++.+|.+.+.|..+++..-......          ..+...                     -...-..++++|
T Consensus       323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp  402 (599)
T 1w6s_A          323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP  402 (599)
T ss_dssp             EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred             EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence             567778999999999999987554222110          000000                     000123567888


Q ss_pred             CCCEEEEE----------------------------------------eCCeEEEEEcCCcceeeeeecCCCCCEEEEEE
Q 001352          948 DQTRFLLV----------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATF  987 (1093)
Q Consensus       948 dg~~l~~~----------------------------------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~f  987 (1093)
                      +..++.+.                                        ..+.|.-||+.+|+.+-+...+  .++..-.+
T Consensus       403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~  480 (599)
T 1w6s_A          403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM  480 (599)
T ss_dssp             TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred             CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcce
Confidence            87766541                                        2257888999999877654322  22222223


Q ss_pred             ccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352          988 SCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       988 s~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                      ...|.+++.++.||.++.||..+|+.+.++.
T Consensus       481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence            3466788889999999999999999998886

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.79  E-value=6.6e-07  Score=91.59  Aligned_cols=199  Identities=12%  Similarity=0.072  Sum_probs=138.1

Q ss_pred             CeeEEEEccCCCEEEEEe---CCeEEEEEccCceeEEEECCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCccee
Q 001352          805 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  880 (1093)
Q Consensus       805 ~v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~  880 (1093)
                      ....++|++|+.++++.+   ++.|.++|+.+++.+..+.... .....+++.  ++++.++...++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            457899999976666554   3789999999999998876322 233356665  3455566667899999999999998


Q ss_pred             eecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCe
Q 001352          881 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH  959 (1093)
Q Consensus       881 ~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~  959 (1093)
                      .++..-...  ...+++||+.|+++..++.|.++|..+.+......+... +...  ..+..+.|. +|+..+.. .++.
T Consensus       100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~--~~~nele~~-dg~lyvn~~~~~~  173 (266)
T 2iwa_A          100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRV--IRLNELEYI-NGEVWANIWQTDC  173 (266)
T ss_dssp             EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEEC--CCEEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Cccc--ccceeEEEE-CCEEEEecCCCCe
Confidence            887532121  244667888887777788999999998665443222211 1110  135678888 77554444 4689


Q ss_pred             EEEEEcCCcceeeeeecCC------------CCCEEEEEEccCCCE-EEEEeCCCcEEEEEcCCC
Q 001352          960 LAIYEAEELTCLKQWFPIS------------SVPISQATFSCDCRM-VFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus       960 i~vwd~~~~~~~~~~~~~h------------~~~v~~~~fs~dg~~-l~t~~~dg~v~vwd~~~~ 1011 (1093)
                      |.+.|.++++.+..+..+.            ......++|+|+++. ++|+...+.+.+.++...
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            9999999999888765320            135689999999865 455556788888887664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.78  E-value=0.00093  Score=78.57  Aligned_cols=503  Identities=9%  Similarity=-0.053  Sum_probs=255.1

Q ss_pred             CCCCeEEEEECCCCCEEEEEE-cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC
Q 001352          396 PGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  474 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  474 (1093)
                      .-..+..++|++.+..|..+. ..+.|..+++.+.....  ..+..-......+++.+.+.. ++++-...+.|.+.++.
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~--~v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~d  114 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLD  114 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE--EEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE--EEEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECC
Confidence            345678999999777776654 46789999987653211  123333356889999997664 56666778899999976


Q ss_pred             CCceeEEeecCCCCeEEeeecccCCccEEEEE-ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001352          475 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  553 (1093)
Q Consensus       475 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~  553 (1093)
                      .......+...-.....+++.+.. +.++++- +..+.|...+++.................+++++++..|+.+-.   
T Consensus       115 G~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~---  190 (619)
T 3s94_A          115 GSLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---  190 (619)
T ss_dssp             SCSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---
T ss_pred             CCCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---
Confidence            544333332344456677876542 3344443 22466777777654444444444556789999998888877743   


Q ss_pred             CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe-
Q 001352          554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN-  632 (1093)
Q Consensus       554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-  632 (1093)
                      ....|...|+..........+..   .....+++..+ ..+++-...+.|...|..+++....+....  .....+.+. 
T Consensus       191 ~~~~I~~~~~dG~~~~~~~~~~~---~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~~  264 (619)
T 3s94_A          191 KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDI--FSPMDIHAFS  264 (619)
T ss_dssp             TTCCEEEESSSCCEEC------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCC--CCCSEEEECC
T ss_pred             CCCeEEEecCCCCccEEEEeCCC---CCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCC--CCCcEEEEEc
Confidence            25569999987654433333222   23346677654 334444567889999988887766554321  112333332 


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCC--ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccc
Q 001352          633 KNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  710 (1093)
Q Consensus       633 ~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~  710 (1093)
                      |..+-.  +.....     ...+  ..+..........  .+.+|.+..+......+   .    .....+|+.+ ..+.
T Consensus       265 ~~~qp~--~~n~C~-----~~ng~Cs~lCl~~~~~~~~--~C~C~~g~~l~~d~~~C---~----~~~~~~Ll~~-~~~~  327 (619)
T 3s94_A          265 QQRQPN--ATNPCG-----IDNGGCSHLCLMSPVKPFY--QCACPTGVKLLENGKTC---K----DGATELLLLA-RRTD  327 (619)
T ss_dssp             GGGSCC--CCCTTT-----TTGGGCSSEEEECSSTTSE--EEECCTTCCBCTTSSCB---C----SSCSEEEEEE-ESSC
T ss_pred             cccCCC--cccccc-----CCCCcccceEECCCCCCCc--eEeCCchheecccCccc---C----CCCceEEEEE-cccc
Confidence            211000  000000     0000  0000000000000  01111111111000000   0    0012223333 2345


Q ss_pred             ceecceeeccCccccccccCccccccceEEEEeecCCceEEEee-ccceeEEeeecCcccCcCcccccccCCcccCCCCC
Q 001352          711 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  789 (1093)
Q Consensus       711 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (1093)
                      |+..++......   ...++. ..-..+.+++|.+.+..|+.+. ..+.|..++.....                     
T Consensus       328 i~~i~l~~~~~~---~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~---------------------  382 (619)
T 3s94_A          328 LRRISLDTPDFT---DIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG---------------------  382 (619)
T ss_dssp             EEEEESSSTTCC---CEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---------------------
T ss_pred             eEEEecCCCccc---eeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc---------------------
Confidence            555554432211   111111 1234567899988655555444 45666665543210                     


Q ss_pred             CceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeC-C
Q 001352          790 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-D  866 (1093)
Q Consensus       790 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-d  866 (1093)
                      . .....    ..-.....+++...+..|..+.  .+.|.+.++........+...-.....+++.|..|.+..+-.. .
T Consensus       383 ~-~~v~~----~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~  457 (619)
T 3s94_A          383 S-QFVVT----AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI  457 (619)
T ss_dssp             C-EEEEC----SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSS
T ss_pred             c-EEEEE----CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCC
Confidence            0 00000    0223456899987666666665  4789999987543322233344678999999944544444322 3


Q ss_pred             CeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEE
Q 001352          867 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF  945 (1093)
Q Consensus       867 g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  945 (1093)
                      +.|...+++...........-.....|++.++++.|..+. ..+.|...++++.....  .......      ....+++
T Consensus       458 ~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~~~~l~------~P~glav  529 (619)
T 3s94_A          458 PKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV--LVEDKIP------HIFGFTL  529 (619)
T ss_dssp             CEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EEECCCC------SSCCEEE
T ss_pred             CEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEE--EeccCCC------CcEEEEE
Confidence            5777777763322222233345678899998776666554 45678889887644222  2221111      2335555


Q ss_pred             ccCCCEEEEE--eCCeEEEEEcCCc
Q 001352          946 HKDQTRFLLV--HETHLAIYEAEEL  968 (1093)
Q Consensus       946 s~dg~~l~~~--~d~~i~vwd~~~~  968 (1093)
                      ..+  .|..+  ..+.|...|..+|
T Consensus       530 ~~~--~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          530 LGD--YVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             ETT--EEEEECTTSSCEEEEESSSC
T ss_pred             ECC--EEEEeecCCCeEEEEEcCCC
Confidence            433  44443  3455666666665

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.74  E-value=0.0017  Score=79.47  Aligned_cols=572  Identities=11%  Similarity=0.042  Sum_probs=298.1

Q ss_pred             CCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC
Q 001352          397 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  476 (1093)
Q Consensus       397 ~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  476 (1093)
                      ...|.++.-..+|. |-.|+.+| +..||-..-+.....  -......|.++....+|.   |..|+.+| +..||..+.
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~--~~~~~~~i~~i~~d~~g~---lWigT~~G-l~~yd~~~~   92 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTY--GENNNTRIYCGVIIDNTY---LYMGTDNG-ILVYNYRAD   92 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCT--TSTTSSCEEEEEEETTTE---EEEEETTE-EEEEETTTT
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEcc--CCCCCceEEEEEEcCCCc---EEEEeCCC-eEEEeCCCC
Confidence            56799999888874 44566777 667774321111100  011234688888777764   44555554 789998876


Q ss_pred             ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe----cCCCCceEEEEEccCCCEEEEEecCC
Q 001352          477 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----DAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       477 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      +...........|.++..   .++ .|..++.+ -+..+|..+.......    ......|.++....+|...+.. .  
T Consensus        93 ~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~--  164 (758)
T 3ott_A           93 RYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGT-Y--  164 (758)
T ss_dssp             EECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEE-T--
T ss_pred             EEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEe-C--
Confidence            543211112234666543   233 45556655 5777887654432220    1223468888888888876643 2  


Q ss_pred             CCceeEEEEeCCCCeeeeeeeccc--ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  630 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  630 (1093)
                        . -|..++..+++.........  .....|.++...+++..|..|+. +.+..+|..+++........  ...|.++.
T Consensus       165 --~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--~~~i~~i~  238 (758)
T 3ott_A          165 --N-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--NNSIKSLA  238 (758)
T ss_dssp             --T-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE--EEEEEEEE
T ss_pred             --C-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC--CCeEEEEE
Confidence              2 27788887765432111100  01234788888777776666664 46888998876543221111  12367777


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCCceeeecc-------cccccceeeeecCCCceeeeeccCCceEecCCCCCCCccce
Q 001352          631 FNKNGTLLAVIANENRIKILETPESNSVDAAG-------VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI  703 (1093)
Q Consensus       631 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~  703 (1093)
                      ...+|.+.+ |+. +-+.+++..+........       -....|.++.....                      |... 
T Consensus       239 ~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~----------------------g~lW-  293 (758)
T 3ott_A          239 LDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE----------------------HNIW-  293 (758)
T ss_dssp             ECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT----------------------CCEE-
T ss_pred             EcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC----------------------CCEE-
Confidence            777776554 454 457778776543221111       11123444443322                      2222 


Q ss_pred             eecccccceecceeeccCcccccc-ccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCc
Q 001352          704 SVEAENKSEVEKPLFARPSECQSL-LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  782 (1093)
Q Consensus       704 s~~~d~~i~~w~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  782 (1093)
                      .|+..| +.+....  ........ ..........|.++....+|...+. +.+| +..++-.....         ....
T Consensus       294 iGT~~G-l~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~---------~~~~  359 (758)
T 3ott_A          294 LGTDYG-ISLSRYN--SALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGER---------HDAI  359 (758)
T ss_dssp             EEESSS-EEEECCC--C-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSC---------CCCE
T ss_pred             EEeCCc-ccccccC--CceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeeccccccc---------ceeE
Confidence            222223 2211110  00000000 0001112346888888888885544 4555 33333221100         0011


Q ss_pred             ccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEE--CC----CCCCeEEEEEcCCC
Q 001352          783 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--MP----PSPTATSLAFNPHD  856 (1093)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~s~~d  856 (1093)
                      .+......    ..+    ....|.++.-.++|.+.+.. ++.+..++..+++...-.  ..    ....|.++...+ +
T Consensus       360 ~~~~~~~~----~~l----~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~  429 (758)
T 3ott_A          360 WYRMGDKT----YPL----SHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-A  429 (758)
T ss_dssp             EECTTCSS----SCC----SCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-T
T ss_pred             EeccCCcC----CCC----CCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-C
Confidence            11110000    001    24568899888888876654 668999998877654321  11    224578888876 5


Q ss_pred             CCEEEEEeCCCeEEEEEcCCc-----cee---eec---cc-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 001352          857 NNVIAIGMDDSTILIYNARSS-----EVI---SKL---EG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC  924 (1093)
Q Consensus       857 ~~~lasg~~dg~i~iwd~~~~-----~~~---~~l---~~-h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~  924 (1093)
                      ++ |-.|+..+-+.++|..+.     ...   ..+   .+ ....|.++...++|++.+.++..+-|..+|..+++... 
T Consensus       430 g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~-  507 (758)
T 3ott_A          430 GQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK-  507 (758)
T ss_dssp             SE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE-
T ss_pred             CC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE-
Confidence            65 445776666888886531     111   111   11 12358899999999887643334448889988755332 


Q ss_pred             eeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecC-CCCCEEEEEEccCCCEEEEEeCCCcE
Q 001352          925 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTL 1003 (1093)
Q Consensus       925 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~~~fs~dg~~l~t~~~dg~v 1003 (1093)
                        +.. ... .....+.++....+|.+.+.+. +.+..|+..++....-...+ ....|.++... +|.+ ..++..| +
T Consensus       508 --~~~-~~~-~~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~l-Wi~t~~G-l  579 (758)
T 3ott_A          508 --LFA-DEL-TGEKSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNSI-WVSTTNG-L  579 (758)
T ss_dssp             --ECT-TTS-CGGGCEEEEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTEE-EEEESSC-E
T ss_pred             --ecC-CCc-CCCcccceEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCCE-EEECCCC-e
Confidence              111 110 0012477888888998887654 56888887765432210111 13467888764 6654 4455565 7


Q ss_pred             EEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352         1004 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus      1004 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
                      ..+|..+.+... +.    ++..    .+.. ++...+ + ..|..|+.+|- ..++..
T Consensus       580 ~~~~~~~~~~~~-~~----~~~~----~~~~-~~~~~~-~-G~l~fG~~~Gl-~~f~p~  625 (758)
T 3ott_A          580 WIIDRKTMDARQ-QN----MTNK----RFTS-LLFDPK-E-DCVYLGGADGF-GISHSN  625 (758)
T ss_dssp             EEEETTTCCEEE-C------CCC----CCSE-EEEETT-T-TEEEEECBSEE-EEEEC-
T ss_pred             EEEcCCCceeEE-ec----CCCC----ceee-eEEECC-C-CcEEEecCCce-EEEChh
Confidence            788988775432 21    1111    1221 222233 3 46777777774 455554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.73  E-value=2.6e-06  Score=87.21  Aligned_cols=216  Identities=9%  Similarity=-0.006  Sum_probs=144.2

Q ss_pred             ceeEEEECCCCC--CeEEEEEcCCCCCEEEEEeC--CCeEEEEEcCCcceeeeccccc-CCeEEEEEeCCCCEE-EEEeC
Q 001352          834 FKTILTIMPPSP--TATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNIL-VSSGG  907 (1093)
Q Consensus       834 ~~~~~~~~~~~~--~i~~l~~s~~d~~~lasg~~--dg~i~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l-~s~s~  907 (1093)
                      .+.+.++. |..  ....++|++ ++.+.++.+.  ++.|.++|+.+++.+..+.-.. .....+++.  ++.| ++.-.
T Consensus         9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A            9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred             ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence            44556664 443  468999999 6655554443  5799999999999888764211 122345555  4444 45556


Q ss_pred             CCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeeeecCC----CCCE
Q 001352          908 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS----SVPI  982 (1093)
Q Consensus       908 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h----~~~v  982 (1093)
                      ++.+.++|..+.+....  +....+        ....+++||+.++++ .+++|.++|.++.+.+..+..+.    -..+
T Consensus        85 ~~~v~viD~~t~~v~~~--i~~g~~--------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~  154 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKN--FTHQMK--------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL  154 (266)
T ss_dssp             CSEEEEEETTTTEEEEE--EECCSS--------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             CCEEEEEECCCCcEEEE--EECCCC--------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence            88999999998664432  222101        124477788877775 46789999999998887766442    1246


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCC---CCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEE
Q 001352          983 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP---TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1059 (1093)
Q Consensus       983 ~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w 1059 (1093)
                      ..+.|. ||+..+....++.|.+.|..+++...++......+.   ..+.....+.-++|+|+...+++++...+.|++-
T Consensus       155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i  233 (266)
T 2iwa_A          155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI  233 (266)
T ss_dssp             EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence            788888 786666665678999999999999999975422110   0011123445789999655677888889999999


Q ss_pred             ecCCC
Q 001352         1060 EPNEP 1064 (1093)
Q Consensus      1060 ~~~~~ 1064 (1093)
                      ++.+.
T Consensus       234 ~l~~~  238 (266)
T 2iwa_A          234 KLHLV  238 (266)
T ss_dssp             EEEEC
T ss_pred             EEecc
Confidence            98654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.69  E-value=3.1e-05  Score=90.59  Aligned_cols=378  Identities=11%  Similarity=0.000  Sum_probs=202.3

Q ss_pred             EEEEEcC-CCcEEEEEC-CCCceeEEeecCCC-Ce----------EEeeecccCCccEEEEEecCCeEEEEEcCCCCceE
Q 001352          458 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGA-PV----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV  524 (1093)
Q Consensus       458 ~l~s~~~-d~~i~vwd~-~~~~~~~~~~~h~~-~v----------~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  524 (1093)
                      .++.++. ++.|.-+|. .+|+.+.++..... .+          ..+++    .+..++.++.|+.+..+|..+++.+.
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            3556666 788999999 89999877653221 00          11222    23478888899999999999999887


Q ss_pred             EecCCCC----ceEE-EEEccCCCEEEEEecCC--CCceeEEEEeCCCCeeeeeeeccccc-------------------
Q 001352          525 DYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ-------------------  578 (1093)
Q Consensus       525 ~~~~~~~----~v~~-~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-------------------  578 (1093)
                      .......    .+.+ ... .++ .++++....  ..++.|+.+|..+|+.+-.+......                   
T Consensus       140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence            7654321    1111 111 144 444443211  01567999999999987665532200                   


Q ss_pred             ---------------CC-CeEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEecCCCCC--
Q 001352          579 ---------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP--  624 (1093)
Q Consensus       579 ---------------~~-~v~~v~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~--  624 (1093)
                                     .. ....+++.++...++.+..+                +.|..+|..+|+.+..+....+..  
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d  297 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence                           00 01235667776777776532                359999999999998876542210  


Q ss_pred             --CCce---EEEecCCC---EEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCC
Q 001352          625 --ENPR---ICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK  696 (1093)
Q Consensus       625 --~v~~---v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s  696 (1093)
                        .+..   +....+|+   .++.++.+|.+.++|..+++.+.........-..-.+.+         ..+...+.....
T Consensus       298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~---------~~g~p~~~~~~~  368 (571)
T 2ad6_A          298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL---------KTGTPVRDPEFA  368 (571)
T ss_dssp             CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT---------TTCSEEECGGGC
T ss_pred             cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc---------cCCceecccccC
Confidence              1112   22224674   577888899999999999977765432110000000000         000000000000


Q ss_pred             CCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccc
Q 001352          697 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT  776 (1093)
Q Consensus       697 ~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~  776 (1093)
                      +                      .+........|.......-..++++|+...+++...+....++..+..         
T Consensus       369 ~----------------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~---------  417 (571)
T 2ad6_A          369 T----------------------RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP---------  417 (571)
T ss_dssp             C----------------------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC---------
T ss_pred             C----------------------CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc---------
Confidence            0                      000000001111001111135688998888888877644444332110         


Q ss_pred             cccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCC
Q 001352          777 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD  856 (1093)
Q Consensus       777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d  856 (1093)
                               ...+..          .-.....+..+|.+. + ...+|.|..||..+++.+.++.... .+....+.. .
T Consensus       418 ---------~~~g~~----------~~g~~~~~~~~~~~~-~-~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~  474 (571)
T 2ad6_A          418 ---------YRAGQF----------FVGATLAMYPGPNGP-T-KKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-K  474 (571)
T ss_dssp             ---------CCTTSC----------CCCEEEEEEECTTST-T-SCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-T
T ss_pred             ---------cccCCc----------cccccceeccCcccc-C-CCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE-C
Confidence                     001110          000111122233321 0 0124788999999998887765322 222222232 3


Q ss_pred             CCEEEEEeCCCeEEEEEcCCcceeeecccccCC-eEEEEEeCCCCEEEE
Q 001352          857 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS  904 (1093)
Q Consensus       857 ~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~l~s  904 (1093)
                      +.++++++.||.|+.+|..+|+.+.+++..... -.-+.+..+|+.++.
T Consensus       475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence            456777999999999999999999887643221 122345577765543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.65  E-value=4e-05  Score=89.66  Aligned_cols=380  Identities=11%  Similarity=0.068  Sum_probs=200.4

Q ss_pred             EEEEcCCCcEEEEECCCCceeEEeecCCCCe---------EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001352          459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPV---------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP  529 (1093)
Q Consensus       459 l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v---------~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  529 (1093)
                      ++.++.++.|.-+|..+|+.+.++.......         ..+++    .+..++.++.|+.|..+|..+++.+......
T Consensus        71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            4444443448999999999988775432210         11122    2347888899999999999999988776543


Q ss_pred             CC----ceE-EEEEcc---CCC-EEEEEecCC--CCceeEEEEeCCCCeeeeeeeccccc--------------------
Q 001352          530 GL----GCT-RMAYSA---NGR-RLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ--------------------  578 (1093)
Q Consensus       530 ~~----~v~-~~~~s~---d~~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~--------------------  578 (1093)
                      ..    .+. ...+..   +|+ .++++....  ..++.|+.+|..+|+.+-........                    
T Consensus       147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w  226 (582)
T 1flg_A          147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW  226 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred             CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence            31    111 111111   233 455543211  12578999999999877554321000                    


Q ss_pred             ------------------CCCeEEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCceEEE
Q 001352          579 ------------------HNSVSVVHFDTAKDQILAAGD--------------------D----HVIKIWDMNKVQLLTT  616 (1093)
Q Consensus       579 ------------------~~~v~~v~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~  616 (1093)
                                        ...-..+++.|+...++.+..                    |    +.|..+|..+|+.+..
T Consensus       227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~  306 (582)
T 1flg_A          227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF  306 (582)
T ss_dssp             CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred             CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence                              000123567777778887663                    2    5899999999999988


Q ss_pred             EecCCCCC----CCc-eEEEe---cCCC---EEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeecc
Q 001352          617 IDAGGGLP----ENP-RICFN---KNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA  685 (1093)
Q Consensus       617 ~~~~~~~~----~v~-~v~~s---~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  685 (1093)
                      +....+..    .+. -+.+.   .+|+   .++.++.+|.++++|..+++.+.........-..-.+.+         .
T Consensus       307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~---------~  377 (582)
T 1flg_A          307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDL---------K  377 (582)
T ss_dssp             EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECT---------T
T ss_pred             EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccc---------c
Confidence            76532210    111 12222   4674   788899999999999999988766543221000000000         0


Q ss_pred             CCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeec
Q 001352          686 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP  765 (1093)
Q Consensus       686 ~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~  765 (1093)
                      .+.........+..  +..  .+            +........|.......-..++++|+...+++...+-...++..+
T Consensus       378 ~g~p~~~~~~~~~~--~~~--~~------------~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~  441 (582)
T 1flg_A          378 TGRPVEREGQRPPL--PEP--GQ------------KHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEE  441 (582)
T ss_dssp             TCCEEECTTCSCCC--CCT--TC------------SSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECC
T ss_pred             CCCEeEccccCCcc--ccc--cc------------cCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeeccc
Confidence            00000000000000  000  00            000000111111111112246788877777776655333333211


Q ss_pred             CcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCC
Q 001352          766 RNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP  845 (1093)
Q Consensus       766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~  845 (1093)
                      ..                  ...|.            ...-..+...|++.    ..+|.|..||+.+++.+.+......
T Consensus       442 ~~------------------~~~g~------------~~~g~~~~~~p~~~----~~~G~l~A~D~~tG~~~W~~~~~~~  487 (582)
T 1flg_A          442 VS------------------YTKGS------------AYLGMGFRIKRMYD----DHVGSLRAMDPVSGKVVWEHKEHLP  487 (582)
T ss_dssp             CC------------------CCTTS------------CCCCEEEEEEESCS----SCSEEEEEECTTTCCEEEEEEESSC
T ss_pred             cc------------------ccCCC------------ceeccceeecCCCC----CCcceEEEEECCCCCEEEEecCCCC
Confidence            00                  00111            10011122223310    1257899999999998877653322


Q ss_pred             CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCe-EEEEEeCCCCEEE
Q 001352          846 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILV  903 (1093)
Q Consensus       846 ~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~l~  903 (1093)
                       +..-.+.. .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..+|+..+
T Consensus       488 -~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          488 -LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             -CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             -CcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence             21111112 34577789999999999999999998887543322 1256667886443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.65  E-value=1.3e-05  Score=93.78  Aligned_cols=167  Identities=9%  Similarity=0.064  Sum_probs=107.0

Q ss_pred             EEEEcCCCCCEEEEEeCC----------------CeEEEEEcCCcceeeeccc--cc--------CCeEEEEEeCCCC--
Q 001352          849 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFSDALN--  900 (1093)
Q Consensus       849 ~l~~s~~d~~~lasg~~d----------------g~i~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s~dg~--  900 (1093)
                      .+++.+ +...++.+..+                +.|..+|..+|+.+..++.  |.        .++. +....+|+  
T Consensus       239 ~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~  316 (571)
T 2ad6_A          239 WYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMT  316 (571)
T ss_dssp             CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEE
T ss_pred             eEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEE
Confidence            356777 44566666532                3699999999998877652  21        2221 23334774  


Q ss_pred             -EEEEEeCCCcEEEEeCCCCceeeeeeeec-C---------CCcc-------------------cC--CCCceEEEEccC
Q 001352          901 -ILVSSGGDAQIFVWDVDGWGIQTCRSLQT-P---------DGVM-------------------TL--APSETHIQFHKD  948 (1093)
Q Consensus       901 -~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~---------~~~~-------------------~~--~~~v~~~~~s~d  948 (1093)
                       .++.++.+|.+.+.|..+++..-...+.. .         .+..                   ..  ...-..++|+|+
T Consensus       317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  396 (571)
T 2ad6_A          317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE  396 (571)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence             57788899999999999987543221110 0         0000                   00  000135789998


Q ss_pred             CCEEEEE-e-------------------------------------CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccC
Q 001352          949 QTRFLLV-H-------------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCD  990 (1093)
Q Consensus       949 g~~l~~~-~-------------------------------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~d  990 (1093)
                      ..++.+. .                                     ++.|..||+.+|+.+-+...+  ..+....+...
T Consensus       397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~  474 (571)
T 2ad6_A          397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTK  474 (571)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEET
T ss_pred             CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEEC
Confidence            8887763 2                                     367999999999887664432  22333333445


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001352          991 CRMVFTSFVDGTLSIHEASNLEVQCRILS 1019 (1093)
Q Consensus       991 g~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 1019 (1093)
                      +..+++++.||.|+.||..+|+.+.++..
T Consensus       475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          475 GGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence            66778899999999999999999988873

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.63  E-value=5e-05  Score=88.84  Aligned_cols=150  Identities=12%  Similarity=0.090  Sum_probs=96.2

Q ss_pred             CeEEEEEcCCcceeeeccc--cc--------CCeEEEEEe-CCCC---EEEEEeCCCcEEEEeCCCCceeeeeeeec---
Q 001352          867 STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT---  929 (1093)
Q Consensus       867 g~i~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~dg~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---  929 (1093)
                      +.|.-+|..+|+.+..++.  |.        .++. +... .+|+   .++.++.+|.+.++|..+++..-......   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            6899999999999877642  32        1221 2222 4674   78889999999999999987543221110   


Q ss_pred             ---------------CCCcc-----------------cCC--CCceEEEEccCCCEEEE-Ee------------------
Q 001352          930 ---------------PDGVM-----------------TLA--PSETHIQFHKDQTRFLL-VH------------------  956 (1093)
Q Consensus       930 ---------------~~~~~-----------------~~~--~~v~~~~~s~dg~~l~~-~~------------------  956 (1093)
                                     .....                 ...  ..-..++++|+..++.+ ..                  
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                           00000                 000  00125678887666554 21                  


Q ss_pred             ---------------CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001352          957 ---------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1019 (1093)
Q Consensus       957 ---------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 1019 (1093)
                                     ++.|.-||+.+|+.+-+...+.  ++..-.....|.++++++.||.++.||..+|+.+.++..
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence                           4679999999998876544322  222222233566888899999999999999999998874

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.63  E-value=6.8e-05  Score=87.42  Aligned_cols=382  Identities=11%  Similarity=0.036  Sum_probs=200.6

Q ss_pred             EEEEEcC-CCcEEEEEC-CCCceeEEeecCCCC-----------eEEeeecccCC--ccEEEEEecCCeEEEEEcCCCCc
Q 001352          458 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-----------VYSLCPHAKEN--IHFIFSISVDGKIKAWLYDSLGA  522 (1093)
Q Consensus       458 ~l~s~~~-d~~i~vwd~-~~~~~~~~~~~h~~~-----------v~~~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~  522 (1093)
                      .++.++. ++.|.-+|. .+|+.+.++......           ...+++.+..+  ...|+.++.|+.+..+|..+++.
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~  143 (599)
T 1w6s_A           64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET  143 (599)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence            4666666 788999999 899998777533211           11223311111  12388888999999999999998


Q ss_pred             eEEecCCCC----ceEE-EEEccCCCEEEEEecCCC--CceeEEEEeCCCCeeeeeeeccccc-----------------
Q 001352          523 RVDYDAPGL----GCTR-MAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQ-----------------  578 (1093)
Q Consensus       523 ~~~~~~~~~----~v~~-~~~s~d~~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~-----------------  578 (1093)
                      +........    .+.+ ..+ .++ .+++++...+  .++.|+.+|..+|+.+-.+......                 
T Consensus       144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g  221 (599)
T 1w6s_A          144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG  221 (599)
T ss_dssp             EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence            877654321    1111 111 144 4444432111  2578999999999987665532200                 


Q ss_pred             -----------------CC-CeEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEecCCCCC
Q 001352          579 -----------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP  624 (1093)
Q Consensus       579 -----------------~~-~v~~v~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~  624 (1093)
                                       .. .-...++.++...++.+..+                +.|..+|..+|+.+..+....+..
T Consensus       222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~  301 (599)
T 1w6s_A          222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE  301 (599)
T ss_dssp             CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred             ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence                             00 00134566777888887655                389999999999998877543311


Q ss_pred             ----CCce-EEEe---cCC---CEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecC
Q 001352          625 ----ENPR-ICFN---KNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  693 (1093)
Q Consensus       625 ----~v~~-v~~s---~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1093)
                          .... +.+.   .+|   ..++.++.+|.+.++|..+++.+.........-..-.+.         ...+...+..
T Consensus       302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~---------~~~g~p~~~~  372 (599)
T 1w6s_A          302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD---------LKTGQPVRDP  372 (599)
T ss_dssp             SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC---------TTTCCEEECG
T ss_pred             ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc---------cCCCceeecc
Confidence                0111 2222   467   567778899999999999998776543211000000000         0000000000


Q ss_pred             CCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCc
Q 001352          694 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST  773 (1093)
Q Consensus       694 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~  773 (1093)
                      ...+                      .+.....+..|.......-..++++|+...+++...+....++-.+.       
T Consensus       373 ~~~~----------------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~-------  423 (599)
T 1w6s_A          373 EYGT----------------------RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFML-------  423 (599)
T ss_dssp             GGCC----------------------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCC-------
T ss_pred             ccCC----------------------CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccc-------
Confidence            0000                      00000011111111122233578899988887777663332221100       


Q ss_pred             ccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEc
Q 001352          774 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN  853 (1093)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s  853 (1093)
                                 ....+..          .-..-..+..+|.+.-......|.|..||+.+++.+.+.......... .+.
T Consensus       424 -----------~~~~g~~----------~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-~~~  481 (599)
T 1w6s_A          424 -----------PYKAGQF----------FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG-TMA  481 (599)
T ss_dssp             -----------CCCTTSC----------CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB-CEE
T ss_pred             -----------cccCCcc----------eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc-ceE
Confidence                       0000110          000000011122110000002467888999999887776422111111 122


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCe-EEEEEeCCCCEE
Q 001352          854 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNIL  902 (1093)
Q Consensus       854 ~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~l  902 (1093)
                      . .+.+++.++.||.++.||.++|+.+.+++-..+.+ .-+.+..+|+..
T Consensus       482 t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy  530 (599)
T 1w6s_A          482 T-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY  530 (599)
T ss_dssp             E-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             e-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence            2 34577779999999999999999998876433211 224556677643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.59  E-value=5.4e-06  Score=83.48  Aligned_cols=186  Identities=12%  Similarity=0.093  Sum_probs=127.3

Q ss_pred             CCeeEEEEccCCCEEEEEe-CC--eEEEEEccCceeEEEECCCCCCeE--EEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352          804 EAVPCFALSKNDAYLFSAS-GG--VISLYIVMTFKTILTIMPPSPTAT--SLAFNPHDNNVIAIGMDDSTILIYNARSSE  878 (1093)
Q Consensus       804 ~~v~~l~~s~dg~~la~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~--~l~~s~~d~~~lasg~~dg~i~iwd~~~~~  878 (1093)
                      .-...+.|+ ++.++.+.+ +|  .|+++|+++++.++.+.... ...  .+++.  ++++.+....++.+.+||..+.+
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc
Confidence            334788998 666666655 44  79999999999998886433 333  34554  34555555668999999999999


Q ss_pred             eeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eC
Q 001352          879 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE  957 (1093)
Q Consensus       879 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d  957 (1093)
                      .+.++.-..   ....+++|++.|+.+..++.|.++|..+.+......+.. .+...  ..+..+.+. +|+..+.. .+
T Consensus       119 ~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~  191 (262)
T 3nol_A          119 QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQT  191 (262)
T ss_dssp             EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTS
T ss_pred             EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccC
Confidence            998887422   223444678877777667889999999876554322221 11111  134457776 77655555 57


Q ss_pred             CeEEEEEcCCcceeeeeecCC-----------CCCEEEEEEccCCCEEEEEeCC
Q 001352          958 THLAIYEAEELTCLKQWFPIS-----------SVPISQATFSCDCRMVFTSFVD 1000 (1093)
Q Consensus       958 ~~i~vwd~~~~~~~~~~~~~h-----------~~~v~~~~fs~dg~~l~t~~~d 1000 (1093)
                      +.|.+.|.++|+.+..+..+.           ..-...++|+|+++.|++.+..
T Consensus       192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            799999999999887764321           2356889999998888877754

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.56  E-value=8.1e-06  Score=99.48  Aligned_cols=248  Identities=10%  Similarity=-0.004  Sum_probs=134.3

Q ss_pred             Cceeeeec-CCCceEEEEEccCC----cEEEEecCCC-ceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352          337 SPMSMDFH-PVQHTLLLVGTNVG----DTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  410 (1093)
Q Consensus       337 ~V~~~~~s-pdg~~llasg~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~  410 (1093)
                      .+...+|| |||++++.+.+.+|    +|+++|+.+| +.+.. .                 +.   .....++|+|||+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~  233 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT  233 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence            67889999 99997555544444    4999999998 63311 0                 10   1134688999999


Q ss_pred             EEEEEEcC-----CEEEEEEccCCCcccceEEec-cccccEEEEEeeCCCCcEEEEEEc-CCCcEEEEECCCCc-ee--E
Q 001352          411 LLGVAYSK-----HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGS-RT--Y  480 (1093)
Q Consensus       411 ~las~~~d-----~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~-~d~~i~vwd~~~~~-~~--~  480 (1093)
                      .|+....+     ..|.++++.++...... .+. .+......+.|||||+.+++.+.. ....|.++|+.++. ..  .
T Consensus       234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~  312 (751)
T 2xe4_A          234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE  312 (751)
T ss_dssp             EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred             EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence            99888765     26888888776422111 222 233456788999999963333322 23468888988763 22  3


Q ss_pred             Ee-ecCCCCeEEeeecccCCccEEEEEecC--C--eEEEEEcCCCCceEE-ecCCCC--ceEEEEEccCCCEEEEEecCC
Q 001352          481 SF-EGHGAPVYSLCPHAKENIHFIFSISVD--G--KIKAWLYDSLGARVD-YDAPGL--GCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       481 ~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d--g--~i~vwd~~~~~~~~~-~~~~~~--~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      .+ ........++.|+  .++.+++....+  +  .|..+++.+...... +..+..  .+..+.  +++..|+.... .
T Consensus       313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~--~~~~~lv~~~~-~  387 (751)
T 2xe4_A          313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIA--VRSNYLVVAGR-R  387 (751)
T ss_dssp             ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEE--ECSSEEEEEEE-E
T ss_pred             EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEE--EECCEEEEEEE-e
Confidence            33 3334455555432  233344444443  2  566666654222112 222222  344444  44566665543 2


Q ss_pred             CCceeEEEEeC-------CCCeeeeeeecccccCCCeEEEEE----cCCCCEE-EEEeC---CCcEEEEECCCCce
Q 001352          553 EGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHF----DTAKDQI-LAAGD---DHVIKIWDMNKVQL  613 (1093)
Q Consensus       553 ~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~v~~----~~~~~~l-~~~~~---dg~i~iwd~~~~~~  613 (1093)
                      ++...|.++++       .+++..+.+....  ...+..+.+    ++++..+ ++.+.   -+.++.+|+.+++.
T Consensus       388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~  461 (751)
T 2xe4_A          388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR  461 (751)
T ss_dssp             TTEEEEEEEECCTTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred             CCEEEEEEEecccccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence            34667888886       4443123332111  112233322    3455544 33332   24677888877764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.55  E-value=6.7e-06  Score=82.79  Aligned_cols=185  Identities=14%  Similarity=0.081  Sum_probs=129.0

Q ss_pred             EEEEEeeCCCCcEEEEEEcCCC--cEEEEECCCCceeEEeecCCCCe-EEeeecccCCccEEEEEecCCeEEEEEcCCCC
Q 001352          445 VNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG  521 (1093)
Q Consensus       445 v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  521 (1093)
                      ...+.|+ ++.  ++++.+.+|  .|+++|+++|+.+.++....... ..+++  .++ .+.+..-.++.+.++|..+.+
T Consensus        45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~-~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKD-KIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETT-EEEEEESSSSEEEEEETTTCC
T ss_pred             cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCC-EEEEEEeeCCEEEEEECccCc
Confidence            4778898 554  667777666  89999999999998886433221 22443  322 444455568999999999999


Q ss_pred             ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc--cCCCeEEEEEcCCCCEEEEEeC
Q 001352          522 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGD  599 (1093)
Q Consensus       522 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~~~~~  599 (1093)
                      .+..+......   ..+++|++.|+.+.    +...|.++|..+.+.+..+.....  .-..++.+.+. +|...+..-.
T Consensus       119 ~~~ti~~~~eG---~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~  190 (262)
T 3nol_A          119 QVRSFNYDGEG---WGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ  190 (262)
T ss_dssp             EEEEEECSSCC---CCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             EEEEEECCCCc---eEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence            88877764422   34457788877763    256799999999998888765320  11234556776 5654444447


Q ss_pred             CCcEEEEECCCCceEEEEecCCC----------CCCCceEEEecCCCEEEEEEC
Q 001352          600 DHVIKIWDMNKVQLLTTIDAGGG----------LPENPRICFNKNGTLLAVIAN  643 (1093)
Q Consensus       600 dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~l~~~~~  643 (1093)
                      ++.|.+.|..+++.+..+...+-          ....+.+||+|+++.|++.+.
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            88999999999999999876421          123478999999888888776

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.53  E-value=5.5e-06  Score=83.30  Aligned_cols=184  Identities=8%  Similarity=0.074  Sum_probs=125.3

Q ss_pred             CCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCe--EEEEEcCCCCCEEEEEeCCCeEEEEEcCCccee
Q 001352          804 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  880 (1093)
Q Consensus       804 ~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~  880 (1093)
                      .-...+.|+. +.++.+.+ +|.|+++|+++++.++.+ -. ...  -.+++.  ++++.+....++.+.+||..+.+.+
T Consensus        55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred             cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence            3456888873 44444444 588999999999998887 22 233  335664  4556666677899999999999999


Q ss_pred             eecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCe
Q 001352          881 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH  959 (1093)
Q Consensus       881 ~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~  959 (1093)
                      .++..- ..-..+  ++|++.|+.+..++.|.++|..+.+......+.......   ..+..+.|. +|+..+.. .++.
T Consensus       130 ~ti~~~-~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v---~~lNeLe~~-dG~lyanvw~s~~  202 (268)
T 3nok_A          130 RTTRYS-GEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV---ELINELECA-NGVIYANIWHSSD  202 (268)
T ss_dssp             EEEECS-SCCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTCSE
T ss_pred             EEEeCC-CceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc---ccccccEEe-CCEEEEEECCCCe
Confidence            888742 222334  467888887777889999999987655433332211111   134567776 77655555 5678


Q ss_pred             EEEEEcCCcceeeeeecC------------CCCCEEEEEEccCCCEEEEEeC
Q 001352          960 LAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV  999 (1093)
Q Consensus       960 i~vwd~~~~~~~~~~~~~------------h~~~v~~~~fs~dg~~l~t~~~  999 (1093)
                      |.+.|.++|+.+..+..+            -..-...++++|+++.|++.+.
T Consensus       203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            999999999988775432            1246688999998766666554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.50  E-value=6.8e-06  Score=98.72  Aligned_cols=278  Identities=10%  Similarity=0.015  Sum_probs=156.2

Q ss_pred             eeeecC-CCceEEEEEccCC-----------cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          340 SMDFHP-VQHTLLLVGTNVG-----------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       340 ~~~~sp-dg~~llasg~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      ++++.| +|+ +++.|+.++           .+.+||..+++-.....                +...+.....++++.+
T Consensus       190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~~  252 (656)
T 1k3i_A          190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMDG  252 (656)
T ss_dssp             EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEECT
T ss_pred             eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCCC
Confidence            567777 776 677776532           57888888776432100                1122334445678889


Q ss_pred             CCCEEEEEEc-CCEEEEEEccCCCcccceEEecccccc-EEEEEeeCCCCcEEEEEEc-CC-----CcEEEEECCCCcee
Q 001352          408 DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQISVITCG-DD-----KTIKVWDAVTGSRT  479 (1093)
Q Consensus       408 dg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~~~-v~~~~~s~d~~~l~l~s~~-~d-----~~i~vwd~~~~~~~  479 (1093)
                      +|+.+++|+. +..+.+||..+++-.. ...+  +..+ -.+++..++|+  +++.|+ .+     ..+.+||..+++..
T Consensus       253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~--~~~R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          253 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDM--QVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCC--SSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             CCCEEEeCCCCCCceEEecCcCCceeE-CCCC--CccccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence            9999999984 4579999998764221 1111  1111 13455667888  777777 34     56999999887644


Q ss_pred             EEe----ecCCCCeEEeeecccCCccEEEEEecCC---------eEEEEEcCCCCceEEecCC---------CCceEEEE
Q 001352          480 YSF----EGHGAPVYSLCPHAKENIHFIFSISVDG---------KIKAWLYDSLGARVDYDAP---------GLGCTRMA  537 (1093)
Q Consensus       480 ~~~----~~h~~~v~~~~~~~~~~~~~l~s~~~dg---------~i~vwd~~~~~~~~~~~~~---------~~~v~~~~  537 (1093)
                      ..-    ......-....+  ..++..++.++.+|         .+..||..+..-.......         ...-.++.
T Consensus       328 ~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~  405 (656)
T 1k3i_A          328 SLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM  405 (656)
T ss_dssp             EETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred             eCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence            320    000000000011  12334455555444         4677887765533222111         11223444


Q ss_pred             Ecc-CCCEEEEEecCCC----Cc---eeEEEEeCCCCeeeeee--ecccccCCCeEEEEEcCCCCEEEEEeCC-------
Q 001352          538 YSA-NGRRLFSCGTSKE----GE---SFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDD-------  600 (1093)
Q Consensus       538 ~s~-d~~~l~~~~~~~~----~~---~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~v~~~~~~~~l~~~~~d-------  600 (1093)
                      +.. +++.++.|+....    ..   ..|.+||..+.......  ....  ...-.+++..|+++.++.|+.+       
T Consensus       406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~~~~~  483 (656)
T 1k3i_A          406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFED  483 (656)
T ss_dssp             EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred             ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCcCcCC
Confidence            443 6777777764221    01   16888998877654433  1111  1223455677899999998754       


Q ss_pred             ----CcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC
Q 001352          601 ----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  643 (1093)
Q Consensus       601 ----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  643 (1093)
                          ..+.+||..+.+....-.............+.|+|+.++.|+.
T Consensus       484 ~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          484 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                5689999988765443222211122234556789999999885

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.46  E-value=0.00038  Score=75.19  Aligned_cols=234  Identities=9%  Similarity=0.038  Sum_probs=133.7

Q ss_pred             CCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEEC---CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce
Q 001352          803 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  879 (1093)
Q Consensus       803 ~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~  879 (1093)
                      ...+.+++|.+ +..++++..+.|.. ....|+.-....   .+...+..+++.+ +++.++++ .+|.|.. ..+.|+.
T Consensus        79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred             CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCC
Confidence            44678899986 56666666675433 222233322222   2334577888876 66666655 4564432 2222332


Q ss_pred             e-eecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCC
Q 001352          880 I-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET  958 (1093)
Q Consensus       880 ~-~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~  958 (1093)
                      - ....++...+..+++.+++.+++.+...+..+-+|-....   ...+...  ..   ..+..++++++++.++++.+|
T Consensus       154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~t---W~~~~~~--~~---~~~~~~~~~~~g~~~~~~~~G  225 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA---WEPHNRT--TS---RRLHNMGFTPDGRLWMIVNGG  225 (327)
T ss_dssp             EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSS---CEEEECC--SS---SCEEEEEECTTSCEEEEETTT
T ss_pred             CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCc---eeECCCC--CC---CccceeEECCCCCEEEEeCCc
Confidence            1 1223455678999999998888766544433334431111   1122211  11   257889999999988888888


Q ss_pred             eEEEEEcCCcceeeeeecC---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCcccee
Q 001352          959 HLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1035 (1093)
Q Consensus       959 ~i~vwd~~~~~~~~~~~~~---h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1035 (1093)
                      .+++.+...|+.......+   +...+.++.+.+++..++++ .+|.| .+..+.|+.-..+......+.     .++  
T Consensus       226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-----~~~--  296 (327)
T 2xbg_A          226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-----NFY--  296 (327)
T ss_dssp             EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-----CCC--
T ss_pred             eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-----CeE--
Confidence            8877654435443332222   23468899999988877755 57766 566776755444431111112     244  


Q ss_pred             EEEeCCCCCCEEEEEeCCCcEEEEe
Q 001352         1036 AIAAHPLKPTQFAVGLTNGEVYVIE 1060 (1093)
Q Consensus      1036 ~~~~~p~d~~~l~~~~~dg~v~~w~ 1060 (1093)
                      ++.|.+  +..+++++.+|.|.-++
T Consensus       297 ~v~~~~--~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          297 KILFFS--PDQGFILGQKGILLRYV  319 (327)
T ss_dssp             EEEEEE--TTEEEEECSTTEEEEEC
T ss_pred             EEEEEC--CCceEEEcCCceEEEEc
Confidence            345543  35688888999776664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.44  E-value=9.5e-05  Score=79.26  Aligned_cols=229  Identities=13%  Similarity=0.107  Sum_probs=139.0

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEc-CCC-cEEEEECCC
Q 001352          398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK-TIKVWDAVT  475 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d~-~i~vwd~~~  475 (1093)
                      .....++|+++|+++++-..++.|..||..++.  ...  + ........+++.++|+  ++++.. .++ .|..+|..+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~  104 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIH--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD  104 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEE--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEE--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence            457789999999977776678899999987532  211  1 2234688999999998  444443 333 477778788


Q ss_pred             CceeEEeec-CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE-e-------c--CCCCceEEEEEccCCCE
Q 001352          476 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-Y-------D--APGLGCTRMAYSANGRR  544 (1093)
Q Consensus       476 ~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~-------~--~~~~~v~~~~~s~d~~~  544 (1093)
                      ++....... .......++..  .++..+++...++.|.++|......... .       .  ..-.....+  +++++.
T Consensus       105 g~~~~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~  180 (306)
T 2p4o_A          105 GTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF  180 (306)
T ss_dssp             SCEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred             CeEEEEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence            875433221 11223344432  2334445544688888888765321111 1       0  111133445  889988


Q ss_pred             EEEEecCCCCceeEEEEeCCC-Cee--eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC
Q 001352          545 LFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  621 (1093)
Q Consensus       545 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  621 (1093)
                      |+++..   ..+.|..+++.. +..  ...+..    ......++++++|+.+++....+.|.++|.. ++.........
T Consensus       181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~  252 (306)
T 2p4o_A          181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ  252 (306)
T ss_dssp             EEEEET---TTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred             EEEEeC---CCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence            877653   256799999864 332  111211    1245668899999877777778899999975 65533222222


Q ss_pred             CCCCCceEEEe---cCCCEEEEEECCC
Q 001352          622 GLPENPRICFN---KNGTLLAVIANEN  645 (1093)
Q Consensus       622 ~~~~v~~v~~s---~~~~~l~~~~~dg  645 (1093)
                      ......+++|.   |+++.|++.+..+
T Consensus       253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          253 GVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             ccCCceEEEEecccCCCCEEEEECCCC
Confidence            22346889998   8888887776643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.44  E-value=3.6e-05  Score=83.32  Aligned_cols=241  Identities=10%  Similarity=-0.009  Sum_probs=145.7

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEec-----------------cccccEEEEEeeC-CCCcEEE
Q 001352          398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-----------------AHVGNVNDLAFSA-PCKQISV  459 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-----------------~h~~~v~~~~~s~-d~~~l~l  459 (1093)
                      ....+++|.++|+++.++..++.|..||..+++. ..+....                 .....+..+++.+ +++   |
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~---l   94 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ---L   94 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE---E
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc---E
Confidence            4567789999999888888889999999876542 2111000                 0123578899997 665   4


Q ss_pred             EEEcCCCcEEEEECCCCceeEEeec-----CCCCeEEeeecccCCccEEEEEec-----------------CCeEEEEEc
Q 001352          460 ITCGDDKTIKVWDAVTGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLY  517 (1093)
Q Consensus       460 ~s~~~d~~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~vwd~  517 (1093)
                      +.+...+.|..+|..+++. ..+..     .......+++.+. +|.+.++...                 +|.|..||.
T Consensus        95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQR-TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTT-TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecC-CCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            4443345588888776543 22211     1123566777430 5555555432                 366888877


Q ss_pred             CCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--eeeeeecccccCCCeEEEEEcCCCCEEE
Q 001352          518 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQIL  595 (1093)
Q Consensus       518 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~  595 (1093)
                      .+........ .......++++|+|+.|+++..   ..+.|..+++....  ....+....   + ...+++.++|+..+
T Consensus       173 ~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~~G~l~v  244 (322)
T 2fp8_A          173 STKETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNADGHFWV  244 (322)
T ss_dssp             TTTEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECTTSCEEE
T ss_pred             CCCEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECCCCCEEE
Confidence            6554322211 1123457899999997776643   14569999987531  112222112   3 67889999998766


Q ss_pred             EEeC----------CCcEEEEECCCCceEEEEecCCC--CCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352          596 AAGD----------DHVIKIWDMNKVQLLTTIDAGGG--LPENPRICFNKNGTLLAVIANENRIKILETPE  654 (1093)
Q Consensus       596 ~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  654 (1093)
                      +...          .+.|..+|. .++.+..+....+  ...+..+++ .+++++++....+.|..+++..
T Consensus       245 a~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          245 SSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            6544          467888887 4777777765432  234566666 4566555555678899988763

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.43  E-value=4.6e-05  Score=76.13  Aligned_cols=188  Identities=10%  Similarity=0.038  Sum_probs=126.7

Q ss_pred             CCCeeEEEEccCCCEEEEEe-C--CeEEEEEccCceeEEEECCCCCC-eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352          803 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  878 (1093)
Q Consensus       803 ~~~v~~l~~s~dg~~la~~~-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~  878 (1093)
                      ..-...+.|++ +.++.+.+ +  +.|+.+|+.+++.++.+...... --.+++.  ++++.+....++.+.+||..+.+
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence            44566899986 55555544 2  48999999999999887644332 2334554  45566666778999999999999


Q ss_pred             eeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eC
Q 001352          879 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE  957 (1093)
Q Consensus       879 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d  957 (1093)
                      .+.++... ..-..+  ++|++.|+.+..++.|.++|..+.+......+.. .+...  ..+..+.+. +|+..+.. .+
T Consensus        97 ~~~ti~~~-~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~--~~lNeLe~~-~G~lyanvw~s  169 (243)
T 3mbr_X           97 PRARFRYP-GEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPL--DNLNELEWV-NGELLANVWLT  169 (243)
T ss_dssp             EEEEEECS-SCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTT
T ss_pred             EEEEEeCC-CCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCccc--ccceeeEEe-CCEEEEEECCC
Confidence            99888743 222344  4677777766678899999999876544322222 11111  134455655 66655555 56


Q ss_pred             CeEEEEEcCCcceeeeeecC------------CCCCEEEEEEccCCCEEEEEeCC
Q 001352          958 THLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFVD 1000 (1093)
Q Consensus       958 ~~i~vwd~~~~~~~~~~~~~------------h~~~v~~~~fs~dg~~l~t~~~d 1000 (1093)
                      +.|.+.|.++|+.+..+..+            ...-...++++|++..|++.+.-
T Consensus       170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            79999999999988775432            12366889999988877777653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.42  E-value=0.00011  Score=79.56  Aligned_cols=263  Identities=10%  Similarity=0.029  Sum_probs=147.3

Q ss_pred             CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeee--eecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352          336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKV--WDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  413 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la  413 (1093)
                      ....+++|+++|+ ++.++..++.|..||..+++.... ....  +....|...... ........+..+++.+++..|.
T Consensus        19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~-~~~~~~~~p~gi~~~~~~g~l~   95 (322)
T 2fp8_A           19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVDF-AYASPYWNKAFCENSTDA-EKRPLCGRTYDISYNLQNNQLY   95 (322)
T ss_dssp             SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEEE-EESCTTCCHHHHTTCCCG-GGHHHHCCEEEEEEETTTTEEE
T ss_pred             CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEEE-ecccccccccccccccch-hccccCCCCceEEEcCCCCcEE
Confidence            3678899999998 467778889999999887654321 0000  000000000000 0000113578899998333455


Q ss_pred             EEEcCCEEEEEEccCCCcccceE-Eecc-ccccEEEEEeeC-CCCcEEEEEEcC-----------------CCcEEEEEC
Q 001352          414 VAYSKHIVQLYAYHGGSDARQQL-EIDA-HVGNVNDLAFSA-PCKQISVITCGD-----------------DKTIKVWDA  473 (1093)
Q Consensus       414 s~~~d~~i~iwd~~~~~~~~~~~-~~~~-h~~~v~~~~~s~-d~~~l~l~s~~~-----------------d~~i~vwd~  473 (1093)
                      ++...+.|..+|..++.. ..+. ...+ .......+++.+ +|.  +.++-..                 ++.|..||.
T Consensus        96 v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEEEEeC
Confidence            555555688888776532 2111 1111 123478899999 887  4554322                 367889998


Q ss_pred             CCCceeEEeecCCCCeEEeeecccCCccEEEEE-ecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEccCCCEEEEEec
Q 001352          474 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCGT  550 (1093)
Q Consensus       474 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~  550 (1093)
                      .+++....... ......++++  +++..|+.+ ...+.|.+|++....  ....+....+ ...+++.++|++.++...
T Consensus       173 ~~~~~~~~~~~-~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          173 STKETTLLLKE-LHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TTTEEEEEEEE-ESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEeccC-CccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence            77765432221 1234556774  466655444 667899999987521  1111111223 778999999987666542


Q ss_pred             CC------CCceeEEEEeCCCCeeeeeeeccccc-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001352          551 SK------EGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  610 (1093)
Q Consensus       551 ~~------~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~  610 (1093)
                      ..      ...+.|..+|.. ++.+..+...... ...+..+++ .++..+++....+.|.++++..
T Consensus       249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             cccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            10      013568888874 7777666543210 134566666 3454444455677888888753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.40  E-value=0.00085  Score=73.04  Aligned_cols=249  Identities=11%  Similarity=-0.010  Sum_probs=154.2

Q ss_pred             CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEE
Q 001352          335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  414 (1093)
Q Consensus       335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las  414 (1093)
                      .+..+|.+..+++ +|+++  ....|+..++.+......                   +. ....+..++|.+.+..|..
T Consensus        33 ~d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~~-------------------~~-~~~~~~~l~~d~~~~~ly~   89 (349)
T 3v64_C           33 PDRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFW   89 (349)
T ss_dssp             TTSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEEE-------------------EC-SCSCEEEEEEETTTTEEEE
T ss_pred             CCCCcccccccCc-eeEee--cccceEEEeCCCCeeEEe-------------------ec-CCCceEEEEEeccccEEEE
Confidence            3456788877755 34443  335688888766543321                   22 2345889999987666665


Q ss_pred             E-EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEee
Q 001352          415 A-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC  493 (1093)
Q Consensus       415 ~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  493 (1093)
                      + ...+.|..+++.++....   .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....++
T Consensus        90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia  165 (349)
T 3v64_C           90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA  165 (349)
T ss_dssp             EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred             EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence            5 456789999988764221   12222234578899886664 456666678999999765543333333445567888


Q ss_pred             ecccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeee
Q 001352          494 PHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  572 (1093)
Q Consensus       494 ~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  572 (1093)
                      +.|. ++.+.++-... +.|...+++...........-.....++++|++..|+.+-.   +.+.|..+|+........+
T Consensus       166 vdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~  241 (349)
T 3v64_C          166 LHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI  241 (349)
T ss_dssp             EETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred             EecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence            8653 33455555555 78888887754433333333445789999998888877643   2567999997654333223


Q ss_pred             ecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001352          573 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  618 (1093)
Q Consensus       573 ~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  618 (1093)
                      ....   .....+++. .+..+++-...+.|..++..+|+....+.
T Consensus       242 ~~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          242 SQGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             CSSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             eCCC---CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            2222   455677773 34444555567788888877777666665

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.39  E-value=5e-05  Score=76.39  Aligned_cols=185  Identities=9%  Similarity=0.073  Sum_probs=126.5

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352          398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  477 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  477 (1093)
                      .-...+.|+ ++.+..+.+.+|.|+++|+++++.++..  +..   ........++++. +.+..-.++.+.+||.++.+
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl~  127 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPPQ  127 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTTE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcCc
Confidence            335678887 4666677788889999999999877754  333   2222223335555 34445678999999999999


Q ss_pred             eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--C---ceEEEEEccCCCEEEEEecCC
Q 001352          478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--L---GCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~---~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      .+.++..... -..++.    |+..|+.+..++.|.++|..+.+....+....  .   .++.+.|. +|+.. +.... 
T Consensus       128 ~~~ti~~~~e-GwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly-anvw~-  199 (268)
T 3nok_A          128 RERTTRYSGE-GWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY-ANIWH-  199 (268)
T ss_dssp             EEEEEECSSC-CCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE-EEETT-
T ss_pred             EEEEEeCCCc-eeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE-EEECC-
Confidence            9999975322 234443    45677777779999999999988776654422  2   34567776 77544 43321 


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccc----------cCCCeEEEEEcCCCCEEEEEeC
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQL----------QHNSVSVVHFDTAKDQILAAGD  599 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~v~~~~~~~~l~~~~~  599 (1093)
                        ...|.+.|..+|+.+..+.....          .....+.++++|+++.|++.+.
T Consensus       200 --s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          200 --SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             --CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             --CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence              44699999999999888764310          1246789999999887777663

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.36  E-value=7.4e-05  Score=89.66  Aligned_cols=120  Identities=12%  Similarity=0.181  Sum_probs=76.4

Q ss_pred             EEEEcc-CCCEEEEEecCCC-------CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEE
Q 001352          535 RMAYSA-NGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKI  605 (1093)
Q Consensus       535 ~~~~s~-d~~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~i  605 (1093)
                      ..++.+ +++.++.++...+       ....+.+||+.+++..........+.....++++..++..++.|+ .++.+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            566777 8888888775432       123689999998865433222111112334567788899888887 4568999


Q ss_pred             EECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEE-CC-----CeEEEEEcCCC
Q 001352          606 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE-----NRIKILETPES  655 (1093)
Q Consensus       606 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d-----g~i~iw~~~~~  655 (1093)
                      ||..+++....-...... .-.+++..+++++++.|+ .+     ..+.+||..+.
T Consensus       270 yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            999887665443322211 123456667899999988 33     45777777655

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.36  E-value=0.00016  Score=73.53  Aligned_cols=205  Identities=8%  Similarity=0.009  Sum_probs=132.6

Q ss_pred             hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352          331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  410 (1093)
Q Consensus       331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~  410 (1093)
                      |.|-.+++..++|+|+++.|.++...++.|...|.. |+.+....                 +.+ ....-.|++.+++.
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~   82 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQ   82 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCE
Confidence            445556899999999987788888889999999998 77776532                 222 25677889999998


Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEec------cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC---CCceeEE
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYS  481 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~~~  481 (1093)
                      ++++.-.++.+.++++.....+.......      ........++|+|+++.  |+++.......||.+.   .+..+..
T Consensus        83 ~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i  160 (255)
T 3qqz_A           83 FVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHI  160 (255)
T ss_dssp             EEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEE
T ss_pred             EEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceee
Confidence            77776567889999987655322111111      13345689999999985  3334433334444432   1122222


Q ss_pred             ee-------cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CceEEEEEccCCCEE
Q 001352          482 FE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSANGRRL  545 (1093)
Q Consensus       482 ~~-------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~s~d~~~l  545 (1093)
                      +.       .+...+.+++++|. .+++++.....+.+.++|.... .+..+....         .....++|.++|+..
T Consensus       161 ~~~~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly  238 (255)
T 3qqz_A          161 SKDKALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY  238 (255)
T ss_dssp             EECHHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE
T ss_pred             ecchhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEE
Confidence            21       13345678888875 4577788888888999987644 433333322         256789999999866


Q ss_pred             EEEecCCCCceeEEEEeC
Q 001352          546 FSCGTSKEGESFLVEWNE  563 (1093)
Q Consensus       546 ~~~~~~~~~~~~i~iwd~  563 (1093)
                      ++ +.    .+.++.+..
T Consensus       239 Iv-sE----~n~~y~f~~  251 (255)
T 3qqz_A          239 IV-SE----PNRFYRFTP  251 (255)
T ss_dssp             EE-ET----TTEEEEEEC
T ss_pred             EE-cC----CceEEEEEe
Confidence            55 33    335666653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.33  E-value=0.00047  Score=73.74  Aligned_cols=227  Identities=10%  Similarity=0.030  Sum_probs=136.3

Q ss_pred             cceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCC
Q 001352          736 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  815 (1093)
Q Consensus       736 ~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg  815 (1093)
                      .....++++++|+.+++-..++.|..|+....                      . .....     .......++++++|
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~----------------------~-~~~~~-----~~~~p~gia~~~dG   83 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN----------------------Q-QIHAT-----VEGKVSGLAFTSNG   83 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC----------------------E-EEEEE-----CSSEEEEEEECTTS
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc----------------------e-EEEEe-----CCCCceeEEEcCCC
Confidence            35678999999986666556777776653211                      0 11111     12357789999999


Q ss_pred             CEEEEEeC-C--eEEEEEccCceeEEEECC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce-ee---------
Q 001352          816 AYLFSASG-G--VISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-IS---------  881 (1093)
Q Consensus       816 ~~la~~~d-g--~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~-~~---------  881 (1093)
                      +++++... +  .|..++..+++....... .......++..+ ++..+++-..++.|+++|..+++. +.         
T Consensus        84 ~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~  162 (306)
T 2p4o_A           84 DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS  162 (306)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred             cEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccc
Confidence            97665542 2  466677777765433321 222345566666 665566555688999999876421 11         


Q ss_pred             ecccccCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCC-CceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCC
Q 001352          882 KLEGHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET  958 (1093)
Q Consensus       882 ~l~~h~~~V~~l~~s~dg~~l~-s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~  958 (1093)
                      ...+.-.....+  ++|++.|. +-...+.|..++++. ++......+...       .....++++++|++.++ ...+
T Consensus       163 ~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-------~~P~gi~vd~dG~l~va~~~~~  233 (306)
T 2p4o_A          163 NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-------TNIDDFAFDVEGNLYGATHIYN  233 (306)
T ss_dssp             STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-------CCCSSEEEBTTCCEEEECBTTC
T ss_pred             cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-------CCCCCeEECCCCCEEEEeCCCC
Confidence            011111234455  88887654 445578899999875 332211222111       13567999999988777 4567


Q ss_pred             eEEEEEcCCcceeee-eecCCCCCEEEEEEc---cCCCEEEEEeCCC
Q 001352          959 HLAIYEAEELTCLKQ-WFPISSVPISQATFS---CDCRMVFTSFVDG 1001 (1093)
Q Consensus       959 ~i~vwd~~~~~~~~~-~~~~h~~~v~~~~fs---~dg~~l~t~~~dg 1001 (1093)
                      .|.+++.. |+.... .........++++|.   +|++.|+.++..+
T Consensus       234 ~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          234 SVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             eEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            89999975 554221 111223568999999   8988777666543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.33  E-value=0.00061  Score=75.37  Aligned_cols=248  Identities=11%  Similarity=-0.006  Sum_probs=154.6

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-  415 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~-  415 (1093)
                      .-.|.+..+++ +|+++  ....|+..++.++.....                   . .....+..++|.+.+..|..+ 
T Consensus        78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~~-------------------~-~~~~~~~gl~~d~~~~~ly~~D  134 (386)
T 3v65_B           78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------L-NNLENAIALDFHHRRELVFWSD  134 (386)
T ss_dssp             SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEEE-------------------E-CSCSCEEEEEEETTTTEEEEEE
T ss_pred             CCeECCccccc-eeEee--cCccceeeccCCCcEEEE-------------------e-cCCCccEEEEEecCCCeEEEEe
Confidence            45577777755 34443  336788888876654321                   1 233458899999866666555 


Q ss_pred             EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeec
Q 001352          416 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  495 (1093)
Q Consensus       416 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  495 (1093)
                      ...+.|..++..++....   .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.
T Consensus       135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd  210 (386)
T 3v65_B          135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH  210 (386)
T ss_dssp             TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred             CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence            466789999988754211   12222234567889876664 45666667789999876554333333334567788886


Q ss_pred             ccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeec
Q 001352          496 AKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG  574 (1093)
Q Consensus       496 ~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~  574 (1093)
                      +. ++.+.++-... +.|..++++...........-.....++++|++..|+.+-.   ..+.|..+|+........+..
T Consensus       211 p~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~  286 (386)
T 3v65_B          211 PM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ  286 (386)
T ss_dssp             TT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred             cC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence            54 33444554444 78888888765544444444446789999998888877643   256799999865433323322


Q ss_pred             ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 001352          575 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA  619 (1093)
Q Consensus       575 ~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  619 (1093)
                      ..   .....+++ ..+..+++....+.|..++..+|+....+..
T Consensus       287 ~~---~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          287 GL---PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN  327 (386)
T ss_dssp             SC---SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             CC---CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence            22   45677777 3344455556778888888777777766653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.33  E-value=8.7e-05  Score=74.12  Aligned_cols=186  Identities=12%  Similarity=0.067  Sum_probs=127.9

Q ss_pred             cEEEEEeeCCCCcEEEEEEcCCC--cEEEEECCCCceeEEeecCCCCe-EEeeecccCCccEEEEEecCCeEEEEEcCCC
Q 001352          444 NVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSL  520 (1093)
Q Consensus       444 ~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  520 (1093)
                      -...+.|++ +.  ++.+.+.+|  .|+++|+++|+.+.++....... -.+++  .+ +.+.+..-.++.+.+||..+.
T Consensus        22 ftqGL~~~~-~~--LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~-~~ly~ltw~~~~v~v~D~~tl   95 (243)
T 3mbr_X           22 FTEGLFYLR-GH--LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WR-DRLIQLTWRNHEGFVYDLATL   95 (243)
T ss_dssp             CEEEEEEET-TE--EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTTT
T ss_pred             ccccEEEEC-CE--EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eC-CEEEEEEeeCCEEEEEECCcC
Confidence            466889986 44  566766654  89999999999998886433221 23333  22 345555667899999999999


Q ss_pred             CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc--cCCCeEEEEEcCCCCEEEEEe
Q 001352          521 GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAG  598 (1093)
Q Consensus       521 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~~~~  598 (1093)
                      +.+..+......   ..+++|+..|+.+.    +...|.++|..+.+.++.+.....  .-..++.+.+. +|..++..-
T Consensus        96 ~~~~ti~~~~~G---wglt~dg~~L~vSd----gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw  167 (243)
T 3mbr_X           96 TPRARFRYPGEG---WALTSDDSHLYMSD----GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW  167 (243)
T ss_dssp             EEEEEEECSSCC---CEEEECSSCEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             cEEEEEeCCCCc---eEEeeCCCEEEEEC----CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence            888877765433   33446777777653    256799999999988887765320  11244556655 554444444


Q ss_pred             CCCcEEEEECCCCceEEEEecCC-----------CCCCCceEEEecCCCEEEEEEC
Q 001352          599 DDHVIKIWDMNKVQLLTTIDAGG-----------GLPENPRICFNKNGTLLAVIAN  643 (1093)
Q Consensus       599 ~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~~l~~~~~  643 (1093)
                      .+..|.+.|..+|+.+..+...+           .....+.+|++|+++.|++.+.
T Consensus       168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            68899999999999999987442           1123478999998887777765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.31  E-value=0.0016  Score=69.70  Aligned_cols=238  Identities=10%  Similarity=-0.038  Sum_probs=144.4

Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC---CceeE-EeecCC
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTY-SFEGHG  486 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---~~~~~-~~~~h~  486 (1093)
                      +|+.+.. ..|+..|+.+.+...   .+ ........++|.+++.. ++++-...+.|..+++.+   +.... .+...-
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~   76 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI   76 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECC-CeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence            4455444 348888988765322   22 23456789999987664 556666678999999876   22222 232222


Q ss_pred             CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352          487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  566 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~  566 (1093)
                      .....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+...  ..+.|...++.. 
T Consensus        77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG-  152 (316)
T 1ijq_A           77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG-  152 (316)
T ss_dssp             SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTS-
T ss_pred             CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCC-
Confidence            34567777533 33455666778899999987654444444344567899999977776665431  125688888753 


Q ss_pred             eeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352          567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  645 (1093)
Q Consensus       567 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  645 (1093)
                      .....+....  ......+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus       153 ~~~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~  229 (316)
T 1ijq_A          153 VDIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (316)
T ss_dssp             CCEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             CCeEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence            3333332211  24678999999877776654 5678999998754333333322222234577775 355666666678


Q ss_pred             eEEEEEcCCCceeeec
Q 001352          646 RIKILETPESNSVDAA  661 (1093)
Q Consensus       646 ~i~iw~~~~~~~~~~~  661 (1093)
                      .|..++..+++....+
T Consensus       230 ~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          230 AIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEEETTTCCCCEEE
T ss_pred             eEEEEeCCCCcceEEE
Confidence            8998887666544443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.31  E-value=0.019  Score=70.09  Aligned_cols=564  Identities=12%  Similarity=0.064  Sum_probs=286.6

Q ss_pred             CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352          336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  415 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~  415 (1093)
                      ..|.++.-..+|..+  .|+.+| +..||-.+   ...  +.   ..          .......|.++.-..+| .|-.|
T Consensus        22 n~V~~I~qD~~G~lW--igT~~G-L~ryDG~~---~~~--~~---~~----------~~~~~~~i~~i~~d~~g-~lWig   79 (758)
T 3ott_A           22 SVVSCFLQDSEGLIW--IGSNKG-LFSYDGYS---TQQ--HF---TY----------GENNNTRIYCGVIIDNT-YLYMG   79 (758)
T ss_dssp             CCEEEEEECTTSCEE--EEESSC-EEEECSSC---EEE--CS---CT----------TSTTSSCEEEEEEETTT-EEEEE
T ss_pred             ceEEEEEECCCCCEE--EEECCC-ccccCCCc---eEE--EE---cc----------CCCCCceEEEEEEcCCC-cEEEE
Confidence            479999999999643  445656 55666322   111  00   00          01124568888877766 55566


Q ss_pred             EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEee-----cCCCCeE
Q 001352          416 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----GHGAPVY  490 (1093)
Q Consensus       416 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-----~h~~~v~  490 (1093)
                      +.+| +..||..+++... .  .......|.++.. .+|.   +..++.+ -+..+|..+++.. .+.     .....|.
T Consensus        80 T~~G-l~~yd~~~~~f~~-~--~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~  149 (758)
T 3ott_A           80 TDNG-ILVYNYRADRYEQ-P--ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIY  149 (758)
T ss_dssp             ETTE-EEEEETTTTEECC-C--SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEE
T ss_pred             eCCC-eEEEeCCCCEEEC-c--ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEE
Confidence            6666 8899988753211 0  1112335777654 3554   4444444 5888998776543 231     1234567


Q ss_pred             EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352          491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  564 (1093)
Q Consensus       491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~  564 (1093)
                      ++..  +.++.+ ..++.+ -+..++..+..... +...      ...|.++...+++..|..++.     +-+..+|..
T Consensus       150 ~i~~--d~~g~l-Wigt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~  219 (758)
T 3ott_A          150 SIIR--TKDNQI-YVGTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPS  219 (758)
T ss_dssp             EEEE--CTTCCE-EEEETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETT
T ss_pred             EEEE--cCCCCE-EEEeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCC
Confidence            6655  334444 445554 46667765543222 2111      124788888777765555542     238889988


Q ss_pred             CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-----CCCCCceEEEecCCCEEE
Q 001352          565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLA  639 (1093)
Q Consensus       565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~  639 (1093)
                      +++.... ....  ...|.++....++... .|+. +-+.+++..+++.........     ....|.++....+|. |-
T Consensus       220 ~~~~~~~-~~l~--~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW  293 (758)
T 3ott_A          220 TGQIKQT-EAFH--NNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IW  293 (758)
T ss_dssp             TTEEEEE-EEEE--EEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EE
T ss_pred             CCeEEec-cCCC--CCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EE
Confidence            7754322 2111  2458888888777554 4454 458889887765433221110     112366777777776 44


Q ss_pred             EEECCCeEEEEEcCCCceeeecc-----cccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceec
Q 001352          640 VIANENRIKILETPESNSVDAAG-----VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVE  714 (1093)
Q Consensus       640 ~~~~dg~i~iw~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w  714 (1093)
                      +|+..| +.++............     .....|.++....                      +|...+ |+.+| +..+
T Consensus       294 iGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~----------------------~g~lWi-Gt~~G-l~~~  348 (758)
T 3ott_A          294 LGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDS----------------------KGFYWF-GGANG-LIRF  348 (758)
T ss_dssp             EEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECT----------------------TCCEEE-EETTE-EEEE
T ss_pred             EEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcC----------------------CCCEEE-eeCCc-ceee
Confidence            555556 5444322111111000     0112233333332                      232222 22222 2222


Q ss_pred             ceeeccCcccccccc---CccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCc
Q 001352          715 KPLFARPSECQSLLL---PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ  791 (1093)
Q Consensus       715 ~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (1093)
                      +...........+..   +.......|.++.-..+|...+ ++. +-+..|+......            ..+..     
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~------------~~~~~-----  409 (758)
T 3ott_A          349 TDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQF------------IHYNI-----  409 (758)
T ss_dssp             SCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEE------------EEEEE-----
T ss_pred             cccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcE------------EEeec-----
Confidence            211100000000000   0011235688888888887544 443 4566665432211            00000     


Q ss_pred             eeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCc-----eeE---EEEC---C-CCCCeEEEEEcCCCCCE
Q 001352          792 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTF-----KTI---LTIM---P-PSPTATSLAFNPHDNNV  859 (1093)
Q Consensus       792 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~-----~~~---~~~~---~-~~~~i~~l~~s~~d~~~  859 (1093)
                         ...........|.++...++|.+.+....+.+.++|..+.     ...   ..+.   + ....|.++...+ ++.+
T Consensus       410 ---~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~l  485 (758)
T 3ott_A          410 ---VDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNV  485 (758)
T ss_dssp             ---ECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCE
T ss_pred             ---CCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCE
Confidence               0000000234688888888888776555667888886531     111   1221   1 223588999988 7776


Q ss_pred             EEEEeCCCeEEEEEcCCcceeeecc-c--ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccC
Q 001352          860 IAIGMDDSTILIYNARSSEVISKLE-G--HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  936 (1093)
Q Consensus       860 lasg~~dg~i~iwd~~~~~~~~~l~-~--h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  936 (1093)
                      .+.++..+-+..+|..+++...... .  ....+.++....+|.+.+. +..| |..++..+++...   .. ..+-.  
T Consensus       486 Wi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~---~~-~~gl~--  557 (758)
T 3ott_A          486 WVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQS---IS-FGSFS--  557 (758)
T ss_dssp             EEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCB---CC-CCC----
T ss_pred             EEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEE---ec-ccCCC--
Confidence            6533444558889988765443221 1  1346788888888877765 4455 8888877654322   11 11111  


Q ss_pred             CCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEE-ccCCCEEEEEeCCCcEEEEEcC
Q 001352          937 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATF-SCDCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus       937 ~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~f-s~dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
                      ...|.++... +|.+.+++ ++.+..+|..+.+...--..  ...+....+ .+||. |..|+.+|. ..++..
T Consensus       558 ~~~i~~i~~~-~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~-l~fG~~~Gl-~~f~p~  625 (758)
T 3ott_A          558 NNEILSMTCV-KNSIWVST-TNGLWIIDRKTMDARQQNMT--NKRFTSLLFDPKEDC-VYLGGADGF-GISHSN  625 (758)
T ss_dssp             -CCEEEEEEE-TTEEEEEE-SSCEEEEETTTCCEEEC--C--CCCCSEEEEETTTTE-EEEECBSEE-EEEEC-
T ss_pred             ccceEEEEEC-CCCEEEEC-CCCeEEEcCCCceeEEecCC--CCceeeeEEECCCCc-EEEecCCce-EEEChh
Confidence            1347777664 66555544 55688889887654321111  122333344 35665 555777774 455554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.28  E-value=0.0018  Score=70.49  Aligned_cols=249  Identities=10%  Similarity=-0.041  Sum_probs=153.0

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352          398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  477 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  477 (1093)
                      +..+|.+..++ .+|+.+.. ..|+..++.+... .   .+......+..++|.+.+.. ++++-...+.|..+++..+.
T Consensus        34 d~~~C~~~~~~-~~ll~~~~-~~I~~i~~~g~~~-~---~~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~  106 (349)
T 3v64_C           34 DRRSCKALGPE-PVLLFANR-IDIRQVLPHRSEY-T---LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSN  106 (349)
T ss_dssp             TSSCEEESSSC-CEEEEECB-SCEEEECTTSCCE-E---EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCS
T ss_pred             CCCcccccccC-ceeEeecc-cceEEEeCCCCee-E---EeecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCC
Confidence            34456666663 45554433 3477788766432 1   12223345789999987664 45566677889999987765


Q ss_pred             eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001352          478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  557 (1093)
Q Consensus       478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~  557 (1093)
                      ....+.........+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+......  ...
T Consensus       107 ~~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~  183 (349)
T 3v64_C          107 VEEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPR  183 (349)
T ss_dssp             CEEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCE
T ss_pred             ceEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCE
Confidence            44433333334566777543 345566666778999999876554444444445678999999777777654321  267


Q ss_pred             EEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC
Q 001352          558 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT  636 (1093)
Q Consensus       558 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  636 (1093)
                      |..+++............   ......++++|++..|+.+. ..+.|..+|+........+...  ......+++ .++.
T Consensus       184 I~r~~~dG~~~~~~~~~~---~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~  257 (349)
T 3v64_C          184 IEASSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDS  257 (349)
T ss_dssp             EEEEETTSCSCEESCCSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTE
T ss_pred             EEEEeCCCCCcEEEEECC---CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCE
Confidence            888887643322222211   24578999998777776654 5678999998754433333322  223467777 3455


Q ss_pred             EEEEEECCCeEEEEEcCCCceeeecc
Q 001352          637 LLAVIANENRIKILETPESNSVDAAG  662 (1093)
Q Consensus       637 ~l~~~~~dg~i~iw~~~~~~~~~~~~  662 (1093)
                      ++++-...+.|..++..++.....+.
T Consensus       258 ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          258 LYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             EEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEEecCCCCeEEEEEccCCCccEEec
Confidence            55666667888888866665544443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.26  E-value=0.001  Score=73.60  Aligned_cols=247  Identities=11%  Similarity=-0.040  Sum_probs=152.7

Q ss_pred             eEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352          400 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  479 (1093)
Q Consensus       400 V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  479 (1093)
                      -.|.+..+ ..+|+.+.. ..|+..++.++....    +......+..++|.+.+.. ++++-...+.|..+++..+...
T Consensus        79 ~~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~  151 (386)
T 3v65_B           79 RSCKALGP-EPVLLFANR-IDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVE  151 (386)
T ss_dssp             SCEEECSS-CCEEEEECB-SCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEE
T ss_pred             CeECCccc-cceeEeecC-ccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcE
Confidence            34555555 345555444 458888887654221    2223345789999987664 4556667789999998776544


Q ss_pred             EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352          480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  559 (1093)
Q Consensus       480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~  559 (1093)
                      ..+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+......  ...|+
T Consensus       152 ~~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~--~~~I~  228 (386)
T 3v65_B          152 EVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPRIE  228 (386)
T ss_dssp             EEECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS--SCEEE
T ss_pred             EEEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC--CCEEE
Confidence            433323334456676543 345556666678898888876554444444445678999999887777664321  36788


Q ss_pred             EEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEE
Q 001352          560 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL  638 (1093)
Q Consensus       560 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  638 (1093)
                      .+++............   ......++++|++..|+.+ +..+.|..+|+........+...  ......+++ .++.++
T Consensus       229 r~~~dG~~~~~~~~~~---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly  302 (386)
T 3v65_B          229 ASSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLY  302 (386)
T ss_dssp             EEETTSCSCEEEECSS---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEE
T ss_pred             EEeCCCCCcEEEEECC---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEE
Confidence            8887654332222221   2457899999877777665 45678999998754443333322  233467777 445566


Q ss_pred             EEEECCCeEEEEEcCCCceeeecc
Q 001352          639 AVIANENRIKILETPESNSVDAAG  662 (1093)
Q Consensus       639 ~~~~~dg~i~iw~~~~~~~~~~~~  662 (1093)
                      ++-...+.|..++..++.....+.
T Consensus       303 ~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          303 WTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EeeCCCCeEEEEECCCCcceEEEc
Confidence            666667888888866665555444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.26  E-value=0.0021  Score=68.91  Aligned_cols=232  Identities=9%  Similarity=-0.054  Sum_probs=139.8

Q ss_pred             CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-EcCCEEEEEEccCC---Cccc
Q 001352          358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGG---SDAR  433 (1093)
Q Consensus       358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~-~~d~~i~iwd~~~~---~~~~  433 (1093)
                      ..|+..|+.+++....                   + .....+..++|++++..|..+ ...+.|..+++.+.   ....
T Consensus        10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~   69 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD   69 (316)
T ss_dssp             SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred             CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence            6789999887764432                   1 133567899999877666555 45688999998762   2112


Q ss_pred             ceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecC-CeE
Q 001352          434 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKI  512 (1093)
Q Consensus       434 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i  512 (1093)
                      .  .+...-.....+++.+.+.. ++++-...+.|.+.+.........+.........+++.+. ++.++++.... +.|
T Consensus        70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I  145 (316)
T 1ijq_A           70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI  145 (316)
T ss_dssp             E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred             E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence            1  12222234578999876654 4566667889999997654433333333456678888543 33344444333 688


Q ss_pred             EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCC
Q 001352          513 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD  592 (1093)
Q Consensus       513 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~  592 (1093)
                      ...+++...........-.....+++++++..|+.+-.   ..+.|..+|..... .+.+............+++. .+.
T Consensus       146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~  220 (316)
T 1ijq_A          146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDK  220 (316)
T ss_dssp             EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTE
T ss_pred             EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCE
Confidence            88887654433333333456789999998888877653   25579999987433 33332211011345677774 344


Q ss_pred             EEEEEeCCCcEEEEECCCCceEEEEe
Q 001352          593 QILAAGDDHVIKIWDMNKVQLLTTID  618 (1093)
Q Consensus       593 ~l~~~~~dg~i~iwd~~~~~~~~~~~  618 (1093)
                      .+++-...+.|..++..+++.+..+.
T Consensus       221 ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          221 VFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCcceEEEe
Confidence            44555567788888887776665554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.22  E-value=0.00094  Score=67.82  Aligned_cols=216  Identities=13%  Similarity=0.123  Sum_probs=132.0

Q ss_pred             EECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeeccc-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 001352          839 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD  917 (1093)
Q Consensus       839 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~  917 (1093)
                      .+.+-...+..++++|+++++.++...++.|...|.. ++.+.++.- -....-.+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4555556899999999555666778889999999998 887777631 22457889999998877776677889999887


Q ss_pred             CCce-eeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCC---cceeeeee------cCCCCCEEEEE
Q 001352          918 GWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE---LTCLKQWF------PISSVPISQAT  986 (1093)
Q Consensus       918 ~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~---~~~~~~~~------~~h~~~v~~~~  986 (1093)
                      .... ..........+..........++++|+++.|.++ ......||.+..   ...+....      ..+...+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            6442 1112222111111112458999999999777774 333444554431   11111110      11244678899


Q ss_pred             EccC-CCEEEEEeCCCcEEEEEcCCCceEEEecccc-ccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEe
Q 001352          987 FSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILSTA-YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1060 (1093)
Q Consensus       987 fs~d-g~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1060 (1093)
                      |.|. |++++.....+.+.++|.. |+.+..+.... ....  ....-.+--++++| +|+++++ ++-+.++.+.
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l--~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGL--SHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGC--SSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCc--ccccCCCCeeEECC-CCCEEEE-cCCceEEEEE
Confidence            9985 4556666667788889976 45555554331 1110  01112345588998 4765554 7777666554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.21  E-value=0.00027  Score=86.04  Aligned_cols=201  Identities=6%  Similarity=-0.038  Sum_probs=113.6

Q ss_pred             CCCC-CeEEEEEC-CCCCEEEEEEcC-----CEEEEEEccCC-CcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-
Q 001352          395 DPGV-SVNRVVWS-PDGSLLGVAYSK-----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-  465 (1093)
Q Consensus       395 ~h~~-~V~~v~~s-~dg~~las~~~d-----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-  465 (1093)
                      +|.- .+...+|| |||++||.+...     .+|+++|+.++ +.+..  .+.   .....++|+|||+.  |+....| 
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---~~~~~~~WspDg~~--l~y~~~d~  242 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---GTNGEIVWGPDHTS--LFYVTKDE  242 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---EECSCCEECSSTTE--EEEEEECT
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---CceeeEEEecCCCE--EEEEEECC
Confidence            4443 78899999 999999976442     25999999998 63321  111   12356899999985  3333333 


Q ss_pred             ----CcEEEEECCCCcee--EEeec-CCCCeEEeeecccCCccEEEEEecC---CeEEEEEcCCCC-ce--EEec-CCCC
Q 001352          466 ----KTIKVWDAVTGSRT--YSFEG-HGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLG-AR--VDYD-APGL  531 (1093)
Q Consensus       466 ----~~i~vwd~~~~~~~--~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~-~~--~~~~-~~~~  531 (1093)
                          ..|.++++.++...  ..+.. .......+.|  ++||++|+..+.+   ..|.++|+.+.. ..  ..+. ....
T Consensus       243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~  320 (751)
T 2xe4_A          243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG  320 (751)
T ss_dssp             TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred             CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence                35888898887532  23322 2233445556  5577777766533   358888887653 22  2232 2233


Q ss_pred             ceEEEEEccCCCEEEEEecCC-CCceeEEEEeCCCCeeeee-eecccccCCCeEEEEEcCCCCEE-EEEeCCCc--EEEE
Q 001352          532 GCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHV--IKIW  606 (1093)
Q Consensus       532 ~v~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l-~~~~~dg~--i~iw  606 (1093)
                      ...++.|+ +|..|+..+... .+...|+.+++.++..... +..+. ....+..+.+.  ++.+ ++...++.  |.++
T Consensus       321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR--SNYLVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred             ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence            34444443 366666555432 2456788899876322222 22222 01234555554  4455 44666775  4555


Q ss_pred             EC
Q 001352          607 DM  608 (1093)
Q Consensus       607 d~  608 (1093)
                      ++
T Consensus       397 dl  398 (751)
T 2xe4_A          397 MA  398 (751)
T ss_dssp             EC
T ss_pred             ec
Confidence            64

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.17  E-value=0.0034  Score=69.60  Aligned_cols=239  Identities=10%  Similarity=-0.025  Sum_probs=148.9

Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC----ceeEEeecCC
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG  486 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~h~  486 (1093)
                      +|+.+. ...|+..++.+....    .+......+..++|.+.+.. ++++-...+.|+.+++...    .....+....
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~----~~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~  158 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  158 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred             eeEEec-cceeEEEccCCccee----EeccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence            454443 467888888875422    22234557889999987664 4555566788999998652    2223333334


Q ss_pred             CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352          487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  566 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~  566 (1093)
                      .....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.....  ....|...++...
T Consensus       159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~  235 (400)
T 3p5b_L          159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV  235 (400)
T ss_dssp             SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred             CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence            55677777543 34566666678899999887665555554444567899999977777665421  1356888887654


Q ss_pred             eeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352          567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  645 (1093)
Q Consensus       567 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  645 (1093)
                      .........   ......+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus       236 ~~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~  311 (400)
T 3p5b_L          236 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  311 (400)
T ss_dssp             SCEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred             ccEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence            333332222   24678999998888777764 5678999998765544444332222334566663 344555556678


Q ss_pred             eEEEEEcCCCceeeecc
Q 001352          646 RIKILETPESNSVDAAG  662 (1093)
Q Consensus       646 ~i~iw~~~~~~~~~~~~  662 (1093)
                      .|..++..++.....+.
T Consensus       312 ~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          312 AIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             SEEEEESSSCCCCEEEE
T ss_pred             eEEEEEcCCCCceEEEe
Confidence            88888876665555544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.16  E-value=0.00048  Score=77.27  Aligned_cols=246  Identities=11%  Similarity=0.036  Sum_probs=143.7

Q ss_pred             CeeEEEEccC--CCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCC---C-eEEEEEcCCc
Q 001352          805 AVPCFALSKN--DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARSS  877 (1093)
Q Consensus       805 ~v~~l~~s~d--g~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g-~i~iwd~~~~  877 (1093)
                      ....++++|+  +..|.++. .+.|+.+|..++..... .........+++++ +++++++....   . .+...+...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence            3568999985  44454454 48899999987766544 33556789999999 77754443321   1 2333333222


Q ss_pred             cee-eecccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE
Q 001352          878 EVI-SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV  955 (1093)
Q Consensus       878 ~~~-~~l~~h~~~V~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~  955 (1093)
                      ... ..+. .......+++.| +|.+.++-..++.|+.++..++.... .......  .   .....++|+|+|+.|.++
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~--~---~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDT--K---GSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSC--C---SSCEEEEECTTSSEEEEE
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCC--C---CCcccEEEeCCCCEEEEE
Confidence            110 1111 223456688999 67777666677889999998665411 1111111  1   123479999999966664


Q ss_pred             --eCCeEEEEEcC--Cccee--eeeec--C------------CCCCEEEEEE---------ccCCCEEEEEeCCCcEEEE
Q 001352          956 --HETHLAIYEAE--ELTCL--KQWFP--I------------SSVPISQATF---------SCDCRMVFTSFVDGTLSIH 1006 (1093)
Q Consensus       956 --~d~~i~vwd~~--~~~~~--~~~~~--~------------h~~~v~~~~f---------s~dg~~l~t~~~dg~v~vw 1006 (1093)
                        ..+.|..++..  ++...  ..+..  +            .-.....+++         .++|.++++-...++|+.+
T Consensus       291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~  370 (433)
T 4hw6_A          291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL  370 (433)
T ss_dssp             ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred             eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence              45689998865  33211  11111  0            0124677999         7778777777777889999


Q ss_pred             EcCCCceEEEecccccc-CCCC-------CCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352         1007 EASNLEVQCRILSTAYL-RPTT-------SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus      1007 d~~~~~~~~~~~~~~~~-~~~~-------~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
                      +. +|... .+...... ..+.       ...--.|..++++|.++.++++=...+.|+.+++
T Consensus       371 ~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          371 TP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             CT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            85 55443 33211110 0000       0111247788999545676666666778888876

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.16  E-value=0.00056  Score=76.76  Aligned_cols=245  Identities=12%  Similarity=0.037  Sum_probs=142.0

Q ss_pred             CeeEEEEcc-CCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeC-CC----eEEEEEcCCc
Q 001352          805 AVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS----TILIYNARSS  877 (1093)
Q Consensus       805 ~v~~l~~s~-dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg----~i~iwd~~~~  877 (1093)
                      ....++++| ++..|.++. .+.|+.+|+.++....... .......++|++ ++++|+++.. ++    .+.+++. .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            456889998 455566655 4789999998766544433 556788999999 7885555554 22    3444443 34


Q ss_pred             cee--eecccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE
Q 001352          878 EVI--SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  954 (1093)
Q Consensus       878 ~~~--~~l~~h~~~V~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  954 (1093)
                      ...  ..+.. ......++++| +|.++++-..++.|..++..++....  .......     .....++|+|+|++|.+
T Consensus       215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv  286 (430)
T 3tc9_A          215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI  286 (430)
T ss_dssp             TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred             ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence            322  22221 23456789999 77777776678889999998754321  1222111     24678999999996666


Q ss_pred             E--eCCeEEEEEcCC--cce--eeeeec--C------------CCCCEE-EEEEc--------cCCCEEEEEeCCCcEEE
Q 001352          955 V--HETHLAIYEAEE--LTC--LKQWFP--I------------SSVPIS-QATFS--------CDCRMVFTSFVDGTLSI 1005 (1093)
Q Consensus       955 ~--~d~~i~vwd~~~--~~~--~~~~~~--~------------h~~~v~-~~~fs--------~dg~~l~t~~~dg~v~v 1005 (1093)
                      +  ..+.|..++...  +..  +..+..  +            .-.... .++..        ++|.++++-...++|+.
T Consensus       287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~  366 (430)
T 3tc9_A          287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI  366 (430)
T ss_dssp             EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred             EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence            4  567899887653  221  111110  0            011223 45553        34666666566678888


Q ss_pred             EEcCCCceEEEecccc-ccCC------CCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352         1006 HEASNLEVQCRILSTA-YLRP------TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus      1006 wd~~~~~~~~~~~~~~-~~~~------~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
                      ++ ..|.......... ....      .....--.|..++++|+++.++++-...+.|+.+++
T Consensus       367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            88 4564443322100 0000      000011257788999854566666566678888776

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.16  E-value=0.0048  Score=66.38  Aligned_cols=281  Identities=12%  Similarity=0.028  Sum_probs=147.4

Q ss_pred             CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352          336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  415 (1093)
Q Consensus       336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~  415 (1093)
                      ..+.+|.|.+++. ++++|. .|.| +...+.|+.=......               .......+.+|+|++ +..++ +
T Consensus        36 ~~~~~v~~~~~~~-~~~~G~-~g~i-~~s~DgG~tW~~~~~~---------------~~~~~~~~~~i~~~~-~~~~~-~   95 (327)
T 2xbg_A           36 ATILDMSFIDRHH-GWLVGV-NATL-METRDGGQTWEPRTLV---------------LDHSDYRFNSVSFQG-NEGWI-V   95 (327)
T ss_dssp             SCEEEEEESSSSC-EEEEET-TTEE-EEESSTTSSCEECCCC---------------CSCCCCEEEEEEEET-TEEEE-E
T ss_pred             CcEEEEEECCCCc-EEEEcC-CCeE-EEeCCCCCCCeECCCC---------------CCCCCccEEEEEecC-CeEEE-E
Confidence            3799999988887 466654 5544 3334444321110000               112345788999976 44444 4


Q ss_pred             EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE-eecCCCCeEEeee
Q 001352          416 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCP  494 (1093)
Q Consensus       416 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~h~~~v~~~~~  494 (1093)
                      +..+.|.. ....|+.-........+.+.+..+.+.+++.  +++.+. ++.|.. ....|+.-.. ...+...+..+.+
T Consensus        96 g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~  170 (327)
T 2xbg_A           96 GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNR  170 (327)
T ss_dssp             EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEE
T ss_pred             ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEE
Confidence            56664433 3344543332211112345678888877776  455544 554432 2233433222 2345566788877


Q ss_pred             cccCCccEEEEEecCCeEEEEEcCCCCce-EEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeee
Q 001352          495 HAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  573 (1093)
Q Consensus       495 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~  573 (1093)
                      .+  ++.+++.+...+..+-+|-. +..- .........+..+++.++++.++++.     .+.+++.+...|+.-..+.
T Consensus       171 ~~--~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~  242 (327)
T 2xbg_A          171 SP--SGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELL  242 (327)
T ss_dssp             CT--TSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCB
T ss_pred             cC--CCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEecc
Confidence            54  45566555443333333321 1111 11123345788899999988776553     3446665433344333322


Q ss_pred             cc-cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-CCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001352          574 GL-QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKILE  651 (1093)
Q Consensus       574 ~~-~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~  651 (1093)
                      .. ......+..+.+.+++..+++ +.+|.+ .+....|+.-..+... .....+..+.|.+++. +++++.+|.|.-++
T Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          243 SPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             CTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             CCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            11 001235788999887665554 456766 4555556555444422 1123578898986554 66666788776655


Q ss_pred             c
Q 001352          652 T  652 (1093)
Q Consensus       652 ~  652 (1093)
                      -
T Consensus       320 ~  320 (327)
T 2xbg_A          320 T  320 (327)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.01  E-value=0.0092  Score=66.14  Aligned_cols=250  Identities=8%  Similarity=-0.058  Sum_probs=150.3

Q ss_pred             eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-Ec
Q 001352          339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YS  417 (1093)
Q Consensus       339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~-~~  417 (1093)
                      .|.+..+.. +|+++.  ...|+..++.+.....                    +...-..+..++|++.+..|..+ ..
T Consensus        76 ~C~~~~~~~-~ll~~~--~~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~  132 (400)
T 3p5b_L           76 ACKAVGSIA-YLFFTN--RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLS  132 (400)
T ss_dssp             SCCCSTTSC-EEEEEE--TTEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETT
T ss_pred             ceeeccccc-eeEEec--cceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecC
Confidence            344444433 444443  3678888887765432                    11234678899999976666655 45


Q ss_pred             CCEEEEEEccCCCccc-ceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecc
Q 001352          418 KHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  496 (1093)
Q Consensus       418 d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~  496 (1093)
                      .+.|..+++.+..... ....+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.+
T Consensus       133 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp  211 (400)
T 3p5b_L          133 QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP  211 (400)
T ss_dssp             TTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEET
T ss_pred             CCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEec
Confidence            6789999887632100 11122334456778999985554 556666778999999876554444443445577888865


Q ss_pred             cCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecc
Q 001352          497 KENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  575 (1093)
Q Consensus       497 ~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  575 (1093)
                      .. +.+.++-.. .+.|...+++...........-.....+++++++..|+.+-.   ....|..+|+............
T Consensus       212 ~~-g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~  287 (400)
T 3p5b_L          212 VH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDE  287 (400)
T ss_dssp             TT-TEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCCEEEEECS
T ss_pred             cc-CeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCccEEEEeCC
Confidence            43 334444322 477888888765554444444456789999998888887743   2557999998654433333321


Q ss_pred             cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001352          576 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  618 (1093)
Q Consensus       576 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  618 (1093)
                      . .......+++. .+..+++-...+.|..+|..+|+.+..+.
T Consensus       288 ~-~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          288 K-RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             S-TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             C-CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            1 11345566663 23344455567788888877777666654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.96  E-value=0.0077  Score=64.24  Aligned_cols=233  Identities=12%  Similarity=0.004  Sum_probs=141.9

Q ss_pred             CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-EcCCEEEEEEccCCCcccce
Q 001352          357 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQ  435 (1093)
Q Consensus       357 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~-~~d~~i~iwd~~~~~~~~~~  435 (1093)
                      ...|+..++.+........                 +. .-..+.+++|.+.+..|..+ ...+.|..++..++..... 
T Consensus        12 ~~~I~~i~l~~~~~~~~~~-----------------~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~-   72 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIV-----------------VG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-   72 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEE-----------------EE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred             cCeEEEEECCCCceEEEEE-----------------ec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence            4679999988764211100                 11 12356789999865555544 5667899999887642221 


Q ss_pred             EEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEe--cCCeEE
Q 001352          436 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIK  513 (1093)
Q Consensus       436 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i~  513 (1093)
                       .+...-.....+++.+.+.. ++++-...+.|.++++........+.........+++.+.. + .|+.+.  ..+.|.
T Consensus        73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~-g-~ly~td~~~~~~I~  148 (318)
T 3sov_A           73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS-G-FMYWTDWGEVPKIE  148 (318)
T ss_dssp             -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG-T-EEEEEECSSSCEEE
T ss_pred             -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC-C-EEEEEecCCCCEEE
Confidence             12222234667899876554 55666667899999976543333333344556788886542 3 444444  357788


Q ss_pred             EEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCE
Q 001352          514 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ  593 (1093)
Q Consensus       514 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~  593 (1093)
                      ..+++...........-.....+++++++..|+.+-.   ..+.|..+|+..........+..   .....+++.. +..
T Consensus       149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P~glav~~-~~l  221 (318)
T 3sov_A          149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFE-DIL  221 (318)
T ss_dssp             EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC---SCEEEEEEET-TEE
T ss_pred             EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC---CCceEEEEeC-CEE
Confidence            8887654443333333445689999998888877643   25679999986433322222222   4556777753 344


Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEec
Q 001352          594 ILAAGDDHVIKIWDMNKVQLLTTIDA  619 (1093)
Q Consensus       594 l~~~~~dg~i~iwd~~~~~~~~~~~~  619 (1093)
                      +++-...+.|..++..+|+....+..
T Consensus       222 ywtd~~~~~V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          222 YWTDWSTHSILACNKYTGEGLREIHS  247 (318)
T ss_dssp             EEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             EEEecCCCeEEEEECCCCCceEEEeC
Confidence            44555678899999888877666653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.96  E-value=0.0037  Score=70.02  Aligned_cols=155  Identities=15%  Similarity=0.097  Sum_probs=96.5

Q ss_pred             CceeeeecC-CCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352          337 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  415 (1093)
Q Consensus       337 ~V~~~~~sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~  415 (1093)
                      ....++++| ++..|.++-.. +.|+.+|..++....                    +.........++|+++|++|.++
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyva  196 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMIIT  196 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEEE
Confidence            678999998 45545554433 889999988765432                    11244568899999999977666


Q ss_pred             EcC----C-EEEEEEccCCCcccceEEeccccccEEEEEeeC-CCCcEEEEEEcCCCcEEEEECCCCceeEEeec-CCCC
Q 001352          416 YSK----H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAP  488 (1093)
Q Consensus       416 ~~d----~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-h~~~  488 (1093)
                      ...    . .+.+.+.. +.... ...+.. ......++++| +|.  ++++-..++.|..++..++........ ....
T Consensus       197 d~~~~~~~~~v~~~~~~-g~~~~-~~~l~~-~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~  271 (430)
T 3tc9_A          197 NDQNNNDRPNNYILTRE-SGFKV-ITELTK-GQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW  271 (430)
T ss_dssp             ECCSCTTSEEEEEEEGG-GTSCS-EEEEEE-CSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSSC
T ss_pred             eCCCCcccceEEEEeCC-Cceee-eeeecc-CCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCCc
Confidence            541    2 34444443 33221 112221 23356788999 565  666666778999999887664222221 2234


Q ss_pred             eEEeeecccCCcc-EEEEEecCCeEEEEEcCC
Q 001352          489 VYSLCPHAKENIH-FIFSISVDGKIKAWLYDS  519 (1093)
Q Consensus       489 v~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~  519 (1093)
                      ...+++++  ++. ++++-...+.|..++.+.
T Consensus       272 P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          272 EFHIQFHP--SGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             CEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred             ceeEEEcC--CCCEEEEEECCCCEEEEEeCCc
Confidence            66788854  556 455556678899988764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.90  E-value=0.016  Score=61.69  Aligned_cols=239  Identities=9%  Similarity=-0.015  Sum_probs=145.2

Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee-EEeecCCCCe
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPV  489 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~h~~~v  489 (1093)
                      +|+.+. ...|+..++.+...... ..+ .....+..++|.+.+.. ++++-...+.|..+++..+... ..+...-...
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~-~~~-~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p   81 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENAT-IVV-GGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP   81 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCE-EEE-EEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred             EEEEEc-cCeEEEEECCCCceEEE-EEe-cCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence            344443 45689999987641111 112 22335678999986654 5566667788999998776432 2222222345


Q ss_pred             EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeee
Q 001352          490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  569 (1093)
Q Consensus       490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~  569 (1093)
                      ..+++.+. ++.+.++-...+.|.+++++.................+++.|.+..|+.+...  ....|+..++.... .
T Consensus        82 ~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~-~  157 (318)
T 3sov_A           82 DGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSS-R  157 (318)
T ss_dssp             CEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCS-C
T ss_pred             cEEEEEcC-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCC-e
Confidence            56776533 34566666677899999987655444444445567899999977776665421  14568888876432 2


Q ss_pred             eeeecccccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352          570 RTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  648 (1093)
Q Consensus       570 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  648 (1093)
                      ..+....  -.....+++++++..|+.+ +..+.|..+|+...........  .......+++.. +.++.+-...+.|.
T Consensus       158 ~~~~~~~--l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~  232 (318)
T 3sov_A          158 FIIINSE--IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSIL  232 (318)
T ss_dssp             EEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred             EEEEECC--CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEE
Confidence            2222111  2457899999977777665 4678899999875443333321  123346677753 44555555678899


Q ss_pred             EEEcCCCceeeecc
Q 001352          649 ILETPESNSVDAAG  662 (1093)
Q Consensus       649 iw~~~~~~~~~~~~  662 (1093)
                      .++..+++....+.
T Consensus       233 ~~~~~~G~~~~~i~  246 (318)
T 3sov_A          233 ACNKYTGEGLREIH  246 (318)
T ss_dssp             EEETTTCCSCEEEE
T ss_pred             EEECCCCCceEEEe
Confidence            89887665544443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.89  E-value=0.003  Score=70.76  Aligned_cols=238  Identities=15%  Similarity=0.074  Sum_probs=135.2

Q ss_pred             CceeeeecCC---CceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352          337 SPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  413 (1093)
Q Consensus       337 ~V~~~~~spd---g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la  413 (1093)
                      ....++|+|+   |. |+++ ...+.|+.+|..++....                    +.+.......++|+++|++++
T Consensus       140 ~P~gvavd~~s~~g~-Lyv~-D~~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV  197 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDD-LYWV-GQRDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV  197 (433)
T ss_dssp             CCCEEEECTTTTTCE-EEEE-CBTSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred             CCceEEEccccCCCE-EEEE-eCCCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence            5789999995   54 4444 333899999998876553                    222345689999999999444


Q ss_pred             EEEcC---C-EEEEEEccCCCcccceEEeccccccEEEEEeeC-CCCcEEEEEEcCCCcEEEEECCCCceeEEe-ec-CC
Q 001352          414 VAYSK---H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG-HG  486 (1093)
Q Consensus       414 s~~~d---~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~-h~  486 (1093)
                      +....   . .+...+...+. .. ...+. .-.....+++.| +|.  ++++-..++.|+.+|..++.....+ .. ..
T Consensus       198 ad~~~~~~~~gv~~~~~~~~~-~~-~~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~  272 (433)
T 4hw6_A          198 VDDQSSDTNTGIYLFTRASGF-TE-RLSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK  272 (433)
T ss_dssp             EECCSCTTSEEEEEECGGGTT-CC-EEEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred             EcCCCCcccceEEEEECCCCe-ec-ccccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence            43311   2 24444443322 11 01121 223456788999 565  5566667788999998878763333 21 12


Q ss_pred             CCeEEeeecccCCcc-EEEEEecCCeEEEEEcCCCCc----eEEecCC---------------CCceEEEEE--------
Q 001352          487 APVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCTRMAY--------  538 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~----~~~~~~~---------------~~~v~~~~~--------  538 (1093)
                      ..-..+++++  ++. +.++-...+.|+.++++....    ...+.+.               -.....+++        
T Consensus       273 ~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~  350 (433)
T 4hw6_A          273 GSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAG  350 (433)
T ss_dssp             SSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTT
T ss_pred             CCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccc
Confidence            2234577754  555 455555678899988763211    1111111               113456888        


Q ss_pred             -ccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc---------------cCCCeEEEEEc-CCCCEEEEEeCCC
Q 001352          539 -SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------------QHNSVSVVHFD-TAKDQILAAGDDH  601 (1093)
Q Consensus       539 -s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------------~~~~v~~v~~~-~~~~~l~~~~~dg  601 (1093)
                       .++|.+.++-..    ...|+.++. +|.. .++.+...               .......++++ +++..+++-..++
T Consensus       351 dd~~g~lyvaD~~----n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~  424 (433)
T 4hw6_A          351 EEDEYDFYFCDRD----SHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNH  424 (433)
T ss_dssp             SSCCEEEEEEETT----TTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred             cCCCCcEEEEECC----CCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCC
Confidence             666665555332    567888885 5543 33332210               11346678888 4555444445566


Q ss_pred             cEEEEECC
Q 001352          602 VIKIWDMN  609 (1093)
Q Consensus       602 ~i~iwd~~  609 (1093)
                      .|+.++++
T Consensus       425 rIr~i~~e  432 (433)
T 4hw6_A          425 RVRKIAPE  432 (433)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecC
Confidence            77776653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.87  E-value=0.0051  Score=64.71  Aligned_cols=194  Identities=12%  Similarity=0.161  Sum_probs=123.7

Q ss_pred             CCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCC----CC---EEEEEeC---CCeEEEEEcC--Ccceee
Q 001352          815 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD----NN---VIAIGMD---DSTILIYNAR--SSEVIS  881 (1093)
Q Consensus       815 g~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d----~~---~lasg~~---dg~i~iwd~~--~~~~~~  881 (1093)
                      ..+++... .+.+.+||+ +|+.++.+..  +.+..+.+-| +    ++   ++++...   +++|.+|++.  +++ +.
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence            34444333 578999999 8999988863  5677777665 2    22   2333333   5799999773  333 44


Q ss_pred             eccc------cc-CCeEEEEE--eCC-CC-EEEEEeCCCcEEEEeCCC---CceeeeeeeecCCCcccCCCCceEEEEcc
Q 001352          882 KLEG------HS-KRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHK  947 (1093)
Q Consensus       882 ~l~~------h~-~~V~~l~~--s~d-g~-~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  947 (1093)
                      .+..      .. ..+..+++  +|. ++ +++....+|.+..|++..   +.. ..+.++.+.-.    ..+..++..+
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~-~~~lVR~f~lg----sq~EgcvvDd  189 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI-SGKKVRAFKMN----SQTEGMAADD  189 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE-EEEEEEEEECS----SCEEEEEEET
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc-cceEEEEecCC----CCcceEEEcC
Confidence            3321      11 55677887  774 44 577788899999999943   222 22333332221    2578899999


Q ss_pred             CCCEEEEEeC-CeEEEEEcC-----CcceeeeeecCC-CCCEEEEEE--ccCCC-EEEEEe-CCCcEEEEEcC-CCceEE
Q 001352          948 DQTRFLLVHE-THLAIYEAE-----ELTCLKQWFPIS-SVPISQATF--SCDCR-MVFTSF-VDGTLSIHEAS-NLEVQC 1015 (1093)
Q Consensus       948 dg~~l~~~~d-~~i~vwd~~-----~~~~~~~~~~~h-~~~v~~~~f--s~dg~-~l~t~~-~dg~v~vwd~~-~~~~~~ 1015 (1093)
                      ....|.++.+ ..|..|+.+     +++.+..+-.++ ...+..|++  .++|+ ||++++ .+.+..|||.. +.+.+.
T Consensus       190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg  269 (355)
T 3amr_A          190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA  269 (355)
T ss_dssp             TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred             CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence            8888888754 456666644     344554433333 346888887  56666 666666 56799999997 778888


Q ss_pred             Eec
Q 001352         1016 RIL 1018 (1093)
Q Consensus      1016 ~~~ 1018 (1093)
                      +|.
T Consensus       270 ~f~  272 (355)
T 3amr_A          270 DFR  272 (355)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            886

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.84  E-value=0.016  Score=69.77  Aligned_cols=238  Identities=10%  Similarity=-0.023  Sum_probs=144.9

Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC----ceeEEeecCC
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG  486 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~h~  486 (1093)
                      +|+.+. ...|+..++......    .+......+..++|.+.+.. ++++-...+.|+.+++...    .....+....
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l  470 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  470 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             cccccc-ccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence            444443 344788887765422    22334556789999986664 5566666788999998753    2233333234


Q ss_pred             CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352          487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  566 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~  566 (1093)
                      .....|++.+. .+.+.++-...+.|.+.+++.......+.........|++.|.+.+|+......  ...|...++...
T Consensus       471 ~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~--~~~I~~~~~dG~  547 (791)
T 3m0c_C          471 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT--PAKIKKGGLNGV  547 (791)
T ss_dssp             SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS--SCEEEEEETTSC
T ss_pred             CCcceeeeeec-CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC--CCeEEEEecCCC
Confidence            45667777543 235666667788999999886655444444445678999999877776654211  256888887654


Q ss_pred             eeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352          567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  645 (1093)
Q Consensus       567 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  645 (1093)
                      .....+...   ......|++++.+..|+.+. ..+.|...++........+...........|++.. +.++++-...+
T Consensus       548 ~~~~lv~~~---l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~  623 (791)
T 3m0c_C          548 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINE  623 (791)
T ss_dssp             CEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTT
T ss_pred             ceEEEEeCC---CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCC
Confidence            443333322   25688999998877777764 56789999987655555444332222334555533 33444444567


Q ss_pred             eEEEEEcCCCceeeec
Q 001352          646 RIKILETPESNSVDAA  661 (1093)
Q Consensus       646 ~i~iw~~~~~~~~~~~  661 (1093)
                      .|...+..++..+..+
T Consensus       624 ~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          624 AIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEEEETTTCCCCEEE
T ss_pred             EEEEEeCCCCcceEEe
Confidence            7888877666554444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.80  E-value=0.0056  Score=64.42  Aligned_cols=193  Identities=12%  Similarity=0.134  Sum_probs=120.0

Q ss_pred             EEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccC--Ccc---EEEEE-ec--CCeEEEEEcCCCC-ceEEecC
Q 001352          458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE--NIH---FIFSI-SV--DGKIKAWLYDSLG-ARVDYDA  528 (1093)
Q Consensus       458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~---~l~s~-~~--dg~i~vwd~~~~~-~~~~~~~  528 (1093)
                      ++++...++-+.+||+ +|+.++.+..  +.++.+.+.+.-  +++   ++++. -.  +++|.+|+++... ....+..
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~  118 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD  118 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence            4666666788999998 9999998864  556666554310  111   22333 33  5789999875322 2333311


Q ss_pred             ------CC-CceEEEEE--ccC-CC-EEEEEecCCCCceeEEEEeC-------CCCeeeeeeecccccCCCeEEEEEcCC
Q 001352          529 ------PG-LGCTRMAY--SAN-GR-RLFSCGTSKEGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHFDTA  590 (1093)
Q Consensus       529 ------~~-~~v~~~~~--s~d-~~-~l~~~~~~~~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~v~~~~~  590 (1093)
                            .. ..+..+|+  +|. ++ ++++...    ++.+..|++       .+++.++++...    ..+..|...+.
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~  190 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE  190 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence                  11 45666777  774 44 3444433    456878777       234566666653    46888999999


Q ss_pred             CCEEEEEeCCCcEEEEECC-----CCceEEEEecCCCCCCCceEEE--ecCCC-EEEEEE-CCCeEEEEEcC-CCceeee
Q 001352          591 KDQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICF--NKNGT-LLAVIA-NENRIKILETP-ESNSVDA  660 (1093)
Q Consensus       591 ~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~~~-~l~~~~-~dg~i~iw~~~-~~~~~~~  660 (1093)
                      ..+|+.+-++..|..++.+     +++.+..+....-...+..+++  .++++ +|++.+ .++++.+|+.. +.+.+..
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~  270 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD  270 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence            9999999999877777755     3445555433222234677777  45555 566665 57799999996 4444444


Q ss_pred             c
Q 001352          661 A  661 (1093)
Q Consensus       661 ~  661 (1093)
                      +
T Consensus       271 f  271 (355)
T 3amr_A          271 F  271 (355)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.77  E-value=0.029  Score=67.48  Aligned_cols=251  Identities=9%  Similarity=-0.040  Sum_probs=147.9

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-  415 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~-  415 (1093)
                      .-+|.+..+.. +|+.+  ....|+..++.......                    +......+..++|.+.+..|... 
T Consensus       386 ~~~C~~~~~~p-~Ll~a--n~~~Ir~i~l~~~~~~~--------------------l~~~~~~~~gl~~d~~~~~lY~sD  442 (791)
T 3m0c_C          386 TKACKAVGSIA-YLFFT--NRHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSD  442 (791)
T ss_dssp             CCCCEETTSCC-EEEEE--CBSSEEEECTTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEE
T ss_pred             Cceeeeccccc-ccccc--cccceeEeeccCCccee--------------------eecCCCceEEEeecccCCeeEEee
Confidence            33455544433 33333  33567777776554322                    12234567899999866555544 


Q ss_pred             EcCCEEEEEEccCCCcc-cceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeee
Q 001352          416 YSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  494 (1093)
Q Consensus       416 ~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~  494 (1093)
                      ...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++........+...-.....|++
T Consensus       443 ~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaV  521 (791)
T 3m0c_C          443 LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV  521 (791)
T ss_dssp             TTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEE
T ss_pred             ccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEE
Confidence            45678988988753210 111123334455678999988765 5666677889999997755443333334456788888


Q ss_pred             cccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeee
Q 001352          495 HAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  573 (1093)
Q Consensus       495 ~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~  573 (1093)
                      .+.. +.+.++-... +.|.+.+++...........-.....|++++.+..|+.+-.   +...|...++........+.
T Consensus       522 Dp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~---~~~~I~~~d~dG~~~~~v~~  597 (791)
T 3m0c_C          522 DPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILE  597 (791)
T ss_dssp             ETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEE
T ss_pred             ecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---CCCcEEEEecCCCceEEEec
Confidence            6543 3344443233 77888888765554455444457889999988888877643   24579999986554443333


Q ss_pred             cccccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceEEEEe
Q 001352          574 GLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTID  618 (1093)
Q Consensus       574 ~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~  618 (1093)
                      ... .......+++.  +.+|+. -...+.|...|..+|+.+..+.
T Consensus       598 ~~~-~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          598 DEK-RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             CTT-TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             CCC-ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence            211 11234556653  334544 4466778888877777666654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.75  E-value=0.0095  Score=66.66  Aligned_cols=250  Identities=11%  Similarity=0.128  Sum_probs=141.7

Q ss_pred             CeEEEEECC-CCCEEEEEEc-CCEEEEEEccCCCcccceEEec-cccccEEEEEe-------eCCCCcEEEEEEcCCC--
Q 001352          399 SVNRVVWSP-DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAF-------SAPCKQISVITCGDDK--  466 (1093)
Q Consensus       399 ~V~~v~~s~-dg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~-------s~d~~~l~l~s~~~d~--  466 (1093)
                      ....|+|+| ++..|.++.. .+.|++.|.+++.... +.... ........++|       +++|+.  |+.+...+  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~  216 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK  216 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence            467899999 4555555544 4668888888764322 11111 12235889999       999984  44443332  


Q ss_pred             -----cEEEEECCC-Ccee-----EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC-------CCCc------
Q 001352          467 -----TIKVWDAVT-GSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------SLGA------  522 (1093)
Q Consensus       467 -----~i~vwd~~~-~~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-------~~~~------  522 (1093)
                           .|.+.+... |...     ..+.... ....+++++. ++.++++-..++.|..+|+.       ++..      
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             cccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence                 266666443 2221     2232211 2335566442 45566777788899999987       4432      


Q ss_pred             -----e-EEec-CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC--CCCee--eeeeecc---c---------ccC
Q 001352          523 -----R-VDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE--SEGAI--KRTYQGL---Q---------LQH  579 (1093)
Q Consensus       523 -----~-~~~~-~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~--~~~~~--~~~~~~~---~---------~~~  579 (1093)
                           . ..+. ........++|+|+|+.|+.+-.   ...+|+.++.  .++..  ...+.+.   .         ..-
T Consensus       295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f  371 (496)
T 3kya_A          295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM  371 (496)
T ss_dssp             GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred             ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence                 1 1122 22345678999999997666542   2566888554  33332  1233222   0         001


Q ss_pred             CCeE-EEEEc-------CCCCEEEEEeCCCcEEEEECCCCceEEEEecCC----------------------CCCCCceE
Q 001352          580 NSVS-VVHFD-------TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG----------------------GLPENPRI  629 (1093)
Q Consensus       580 ~~v~-~v~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~v  629 (1093)
                      .... .++..       +++..+++-..++.|+.++ .+|. +.++...+                      .......+
T Consensus       372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI  449 (496)
T 3kya_A          372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL  449 (496)
T ss_dssp             SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred             CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence            2234 45554       4566666666788999998 4554 44443221                      01123578


Q ss_pred             EEecC-CCEEEEEECCCeEEEEEcCCCcee
Q 001352          630 CFNKN-GTLLAVIANENRIKILETPESNSV  658 (1093)
Q Consensus       630 ~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~  658 (1093)
                      +++++ |.++++=..++.|+.+++......
T Consensus       450 avd~~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          450 VYDDVKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             EEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence            99986 766666666789999988765443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.73  E-value=0.01  Score=66.36  Aligned_cols=208  Identities=7%  Similarity=0.001  Sum_probs=118.8

Q ss_pred             CCeeEEEE-------ccCCCEEEEEeC-C-----e--EEEEEccC-ceeE-----EEECCCCCCeEEEEEcCCCCCEEEE
Q 001352          804 EAVPCFAL-------SKNDAYLFSASG-G-----V--ISLYIVMT-FKTI-----LTIMPPSPTATSLAFNPHDNNVIAI  862 (1093)
Q Consensus       804 ~~v~~l~~-------s~dg~~la~~~d-g-----~--i~iwd~~~-~~~~-----~~~~~~~~~i~~l~~s~~d~~~las  862 (1093)
                      .....++|       +++|..|.++.+ +     .  |.+++... +...     +.+.. ......++++|+++.++++
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvt  264 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFN  264 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEE
Confidence            45788999       999997777763 2     1  55555333 2221     12211 1234577899956666667


Q ss_pred             EeCCCeEEEEEcC-------Ccce-----------eeec-c-cccCCeEEEEEeCCCCE-EEEEeCCCcEEEEeCCC--C
Q 001352          863 GMDDSTILIYNAR-------SSEV-----------ISKL-E-GHSKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDG--W  919 (1093)
Q Consensus       863 g~~dg~i~iwd~~-------~~~~-----------~~~l-~-~h~~~V~~l~~s~dg~~-l~s~s~dg~i~iwd~~~--~  919 (1093)
                      -..++.|..+|+.       ++..           ...+ . +.......++|+|+|++ .++-+....|+.++.+.  +
T Consensus       265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~  344 (496)
T 3kya_A          265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK  344 (496)
T ss_dssp             ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             ECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence            7788899999998       5543           1121 1 12344678999999995 44445667788866543  2


Q ss_pred             ceeeeeeeecC---CCccc------CCCCce-EEEEc-------cCCCEEEE-EeCCeEEEEEcCCcceeeeeec-----
Q 001352          920 GIQTCRSLQTP---DGVMT------LAPSET-HIQFH-------KDQTRFLL-VHETHLAIYEAEELTCLKQWFP-----  976 (1093)
Q Consensus       920 ~~~~~~~~~~~---~~~~~------~~~~v~-~~~~s-------~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~-----  976 (1093)
                      .......+...   .+...      .-.... .++..       ++|.+.++ ...++|+.++ .+|. +..+..     
T Consensus       345 ~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~  422 (496)
T 3kya_A          345 EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGAST  422 (496)
T ss_dssp             EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTH
T ss_pred             eecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccc
Confidence            21101111111   11100      001233 44554       45666666 4677899998 4553 333221     


Q ss_pred             --------CC----------CCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceE
Q 001352          977 --------IS----------SVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQ 1014 (1093)
Q Consensus       977 --------~h----------~~~v~~~~fs~d-g~~l~t~~~dg~v~vwd~~~~~~~ 1014 (1093)
                              +.          -.....|+++++ |.++++=....+|+.++++.....
T Consensus       423 ~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          423 SLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             HHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             cccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence                    10          124678999987 766666666778888888776554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.61  E-value=0.019  Score=62.27  Aligned_cols=230  Identities=12%  Similarity=0.065  Sum_probs=125.8

Q ss_pred             CCeeEEEEccCCCEEEEEeCCeEEEEEccCce-eEEEEC---CCCCCeEEEEEcCC---CCCEEEEEeC---C----CeE
Q 001352          804 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-TILTIM---PPSPTATSLAFNPH---DNNVIAIGMD---D----STI  869 (1093)
Q Consensus       804 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---d~~~lasg~~---d----g~i  869 (1093)
                      .....++|.|||+++++-.+|.|.+++ .+++ .+..+.   ........++++|+   ++.+.++-+.   +    +.|
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            346789999999977776679999887 4454 222221   12356889999993   2444444332   3    577


Q ss_pred             EEEEcCCc-------cee-eeccc-ccCCeEEEEEeCCCCEEEEEeCC-------------CcEEEEeCCCCcee-----
Q 001352          870 LIYNARSS-------EVI-SKLEG-HSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ-----  922 (1093)
Q Consensus       870 ~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~dg~~l~s~s~d-------------g~i~iwd~~~~~~~-----  922 (1093)
                      ..|+....       +.+ ..+.. .......++|.|||.+.++.+..             |.|.-.+.+.. ..     
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf  186 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPF  186 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSS
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCC
Confidence            77887653       111 11221 11124579999999888875432             34444444321 00     


Q ss_pred             -eeeeeecCCCcccCCCCceEEEEcc-CCCEEEEE--eCC--eEEEEEcCCcc------------------eeeeeecCC
Q 001352          923 -TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HET--HLAIYEAEELT------------------CLKQWFPIS  978 (1093)
Q Consensus       923 -~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~--~d~--~i~vwd~~~~~------------------~~~~~~~~h  978 (1093)
                       ......  .++.    ....++|+| +|++.++-  .+.  .|.+..  .|.                  .+..+... 
T Consensus       187 ~~~~i~a--~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~-  257 (354)
T 3a9g_A          187 PNSPIWS--YGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSE-  257 (354)
T ss_dssp             TTCCEEE--ECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTC-
T ss_pred             CCCcEEE--EccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCC-
Confidence             000111  1111    356899999 67766662  222  244332  221                  11111011 


Q ss_pred             CCCEEEEEEc-------cCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEe
Q 001352          979 SVPISQATFS-------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1051 (1093)
Q Consensus       979 ~~~v~~~~fs-------~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~ 1051 (1093)
                      ......++|.       .+|.++++....+.|...++..........  .++..    ..-.+..+++.| ||.++++..
T Consensus       258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~--~~~~~----~~~rp~~v~~~p-DG~lyv~~~  330 (354)
T 3a9g_A          258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS--TFFKN----VFGRLRDVVIDD-DGGILISTS  330 (354)
T ss_dssp             CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE--EECTT----TSCCEEEEEECT-TSCEEEEEC
T ss_pred             CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee--eeccC----CCCCeeEEEECC-CCcEEEEEe
Confidence            3467788883       678777777677788888887542221111  11111    112456788999 577666654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.59  E-value=0.00037  Score=83.46  Aligned_cols=205  Identities=9%  Similarity=0.006  Sum_probs=124.1

Q ss_pred             CCeeEEEEccCCCEEEEEe--CCeEEEEEccC----ceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001352          804 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  877 (1093)
Q Consensus       804 ~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~  877 (1093)
                      ..+..++|++++..|..+.  .+.|..+++.+    ......+.........+++.+.+++++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            3456789998887777775  47899999875    22222222222345678888635666665566789999998755


Q ss_pred             ceeeecccccCCeEEEEEeCCCCEEEEEeC-C-CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE
Q 001352          878 EVISKLEGHSKRVTGLVFSDALNILVSSGG-D-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV  955 (1093)
Q Consensus       878 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~  955 (1093)
                      .....+.........+++.|++.+|..+.. . +.|...+++......  ++.   ...   .....++|+|++..|..+
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~---~~l---~~PnGlavd~~~~~LY~a  557 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVT---ENI---QWPNGITLDLLSGRLYWV  557 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESC---SSC---SSCCCEEECTTTCCEEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEe---CCC---CCccEEEEeccCCEEEEE
Confidence            433333323345678899987655554432 2 678777776532111  111   111   146689999987766664


Q ss_pred             --eCCeEEEEEcCCcceeeeeecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352          956 --HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       956 --~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                        ..+.|.++++.... ...+...  .......+++..+ .++++....+.|..++..+|+.+..+.
T Consensus       558 D~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          558 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             ETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             ecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence              45689999986433 3332321  1223345566544 455566667899999998888876664

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.57  E-value=0.007  Score=63.08  Aligned_cols=202  Identities=12%  Similarity=0.102  Sum_probs=124.5

Q ss_pred             CeeEEEEccCCCEEEEEe--CCeEEEEEccCceeEEEECCC-----C--CCeEEEEE---cCCCCCEEEEEeC-------
Q 001352          805 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-----S--PTATSLAF---NPHDNNVIAIGMD-------  865 (1093)
Q Consensus       805 ~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-----~--~~i~~l~~---s~~d~~~lasg~~-------  865 (1093)
                      -..+++|.+....+..++  .++|..|+...+.........     .  ..+..+.+   .| +++++++...       
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence            345788988666666665  799999999866443332211     1  13578999   68 6888876442       


Q ss_pred             ------CCeEEEEEcC---Ccceeeecc--ccc-----------CCeEEEEEeCCCCEEEEEeCC-CcEEEEeCCCCcee
Q 001352          866 ------DSTILIYNAR---SSEVISKLE--GHS-----------KRVTGLVFSDALNILVSSGGD-AQIFVWDVDGWGIQ  922 (1093)
Q Consensus       866 ------dg~i~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~dg~~l~s~s~d-g~i~iwd~~~~~~~  922 (1093)
                            +..|..||+.   +++.+....  +..           .....++..++|+..++++.- +.|...+.+.....
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~  172 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS  172 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence                  6789999999   777654332  211           247889999999999998887 77666666543222


Q ss_pred             eeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcce--eeeeecCC---CCCEEEE-EEccCCCE-E
Q 001352          923 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC--LKQWFPIS---SVPISQA-TFSCDCRM-V  994 (1093)
Q Consensus       923 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~--~~~~~~~h---~~~v~~~-~fs~dg~~-l  994 (1093)
                      . ..+..+....  ....+.+++.|||+.|++. ..+.+..+|+.+...  +..-..+.   -.....+ .--.+|+. |
T Consensus       173 ~-~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll  249 (334)
T 2p9w_A          173 T-FAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL  249 (334)
T ss_dssp             E-EEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred             e-eeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence            1 1112211111  1247899999999988883 478899999885333  21110021   1223443 33357877 5


Q ss_pred             EEEeCCCcEEEEEcCC
Q 001352          995 FTSFVDGTLSIHEASN 1010 (1093)
Q Consensus       995 ~t~~~dg~v~vwd~~~ 1010 (1093)
                      ++.+..+.+.+.+-+.
T Consensus       250 V~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          250 VGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEETTEEEEEECSST
T ss_pred             EEcCCCCEEEEECCCC
Confidence            5555566555555544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.57  E-value=0.00063  Score=81.48  Aligned_cols=234  Identities=9%  Similarity=-0.025  Sum_probs=134.9

Q ss_pred             CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC----CceeEEeecCCCCeEEee
Q 001352          418 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEGHGAPVYSLC  493 (1093)
Q Consensus       418 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~----~~~~~~~~~h~~~v~~~~  493 (1093)
                      .+.|+..++.+.+...    +......+..++|.+.+.. ++++-...+.|+.+++.+    ......+.........++
T Consensus       385 ~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla  459 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  459 (699)
T ss_dssp             TTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred             ccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence            3467888877654322    1122335678999987764 444545567899999875    222222211112344566


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeee
Q 001352          494 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  573 (1093)
Q Consensus       494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~  573 (1093)
                      +.+. ++.++++-...+.|.++++........+.........++++|.+.+|+.+...  ..+.|..+++.... ...+.
T Consensus       460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~-~~~l~  535 (699)
T 1n7d_A          460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVD-IYSLV  535 (699)
T ss_dssp             CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCC-CCEES
T ss_pred             EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCC-eeEEE
Confidence            6433 33455555667889999887654444433333456788999977766654321  12568777765332 22221


Q ss_pred             cccccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352          574 GLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  652 (1093)
Q Consensus       574 ~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  652 (1093)
                      ...  ......++|+|++..|+.+ +..+.|.++++........+...........+++..+ .++++....+.|..++.
T Consensus       536 ~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          536 TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR  612 (699)
T ss_dssp             CSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred             eCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence            111  2456789999986666554 4667899999875444333332222223456677654 45555566788999998


Q ss_pred             CCCceeeeccc
Q 001352          653 PESNSVDAAGV  663 (1093)
Q Consensus       653 ~~~~~~~~~~~  663 (1093)
                      .+++.+..+..
T Consensus       613 ~~G~~~~~i~~  623 (699)
T 1n7d_A          613 LTGSDVNLLAE  623 (699)
T ss_dssp             TTEEEEECCCT
T ss_pred             cCCCceEEeec
Confidence            77766665543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.53  E-value=0.018  Score=62.51  Aligned_cols=228  Identities=11%  Similarity=0.066  Sum_probs=121.2

Q ss_pred             CeeEEEEccCCCEEEEEeCCeEEEEEccCcee--EEEEC---CCCCCeEEEEEcCCC----CCEEEEEeCC-----CeEE
Q 001352          805 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIM---PPSPTATSLAFNPHD----NNVIAIGMDD-----STIL  870 (1093)
Q Consensus       805 ~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~--~~~~~---~~~~~i~~l~~s~~d----~~~lasg~~d-----g~i~  870 (1093)
                      ....++|.|||+++++-..|.|.+++  +++.  +..+.   ........++|+| +    +.+.++-...     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence            45689999999977766679999998  4432  22222   1235688999999 6    4444433332     6788


Q ss_pred             EEEcCCcc-----e-eeecc---cccCCeEEEEEeCCCCEEEEEeCC-------------CcEEEEeCCCCcee------
Q 001352          871 IYNARSSE-----V-ISKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ------  922 (1093)
Q Consensus       871 iwd~~~~~-----~-~~~l~---~h~~~V~~l~~s~dg~~l~s~s~d-------------g~i~iwd~~~~~~~------  922 (1093)
                      .|+...++     . +..+.   +.......++|.|||.+.++.+..             |.|.-++.+. ...      
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~  187 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL  187 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence            88877431     1 12233   111123579999999877775432             3454455443 100      


Q ss_pred             -----eeeeeecCCCcccCCCCceEEEEcc-CCCEEEEE-eCCeE------EEEEcCCcc------------------ee
Q 001352          923 -----TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV-HETHL------AIYEAEELT------------------CL  971 (1093)
Q Consensus       923 -----~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~-~d~~i------~vwd~~~~~------------------~~  971 (1093)
                           ......  .++.    ....++|+| +|++.++- ..+.+      .|.-+..|.                  .+
T Consensus       188 ~~~~~~~~i~a--~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~  261 (352)
T 2ism_A          188 GRRGARPEVYS--LGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL  261 (352)
T ss_dssp             TCTTSCTTEEE--ECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred             CCCCCCccEEE--EcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence                 000000  0111    256789999 67766662 22221      233333222                  11


Q ss_pred             eeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEe-ccccccCCCCCCCccceeEEEeCCCCCCEEEEE
Q 001352          972 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI-LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1050 (1093)
Q Consensus       972 ~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~ 1050 (1093)
                      .. . .+......++| .+|.++++....+.|...++......... ....++..     .-.+..+++.| ||.++++.
T Consensus       262 ~~-~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~  332 (352)
T 2ism_A          262 YF-W-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTT  332 (352)
T ss_dssp             EE-C-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEE
T ss_pred             Ee-c-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEE
Confidence            11 1 22335677888 57777776666677777777654321000 00111111     12456788888 46666655


Q ss_pred             e
Q 001352         1051 L 1051 (1093)
Q Consensus      1051 ~ 1051 (1093)
                      .
T Consensus       333 ~  333 (352)
T 2ism_A          333 S  333 (352)
T ss_dssp             C
T ss_pred             e
Confidence            3

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.53  E-value=0.11  Score=55.81  Aligned_cols=238  Identities=12%  Similarity=0.077  Sum_probs=147.1

Q ss_pred             eeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCC
Q 001352          340 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH  419 (1093)
Q Consensus       340 ~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~  419 (1093)
                      +.-.+|..+ ++|.-. ..++.|+|+++...+..+.+                    ..+|..=.|-.+. .|+-.+ +.
T Consensus        70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~t  125 (494)
T 1bpo_A           70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DN  125 (494)
T ss_dssp             EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETT-EEEEEC-SS
T ss_pred             eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCC-eEEEEc-CC
Confidence            455678777 466543 57899999999888775432                    3467777776544 455443 45


Q ss_pred             EEEEEEccCCCcccceEEecccc----ccEEEEEeeCCCCcEEEEEEc------CCCcEEEEECCCCceeEEeecCCCCe
Q 001352          420 IVQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPV  489 (1093)
Q Consensus       420 ~i~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~l~l~s~~------~d~~i~vwd~~~~~~~~~~~~h~~~v  489 (1093)
                      .|+-|+++......  ..+..|.    ..|..-..+++.++ ++++|=      -.|.+.+|..+.+ .-+.+.||....
T Consensus       126 aVyHWsi~~~s~P~--kvFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F  201 (494)
T 1bpo_A          126 AVYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF  201 (494)
T ss_dssp             EEEEEESSSSCCCE--EEEECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred             eeEEecccCCCCch--hheecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence            69999998644322  2344443    35777778899886 333332      2467889996554 456678887766


Q ss_pred             EEeeecccCCc-cEEEEEecC---CeEEEEEcCCC---Cc-----eEEecC----CCCceEEEEEccCCCEEEEEecCCC
Q 001352          490 YSLCPHAKENI-HFIFSISVD---GKIKAWLYDSL---GA-----RVDYDA----PGLGCTRMAYSANGRRLFSCGTSKE  553 (1093)
Q Consensus       490 ~~~~~~~~~~~-~~l~s~~~d---g~i~vwd~~~~---~~-----~~~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~  553 (1093)
                      ..+.+...... .+++.+...   +.+++-++...   ..     ...+..    ...-..++..|+.-..++..+.   
T Consensus       202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK---  278 (494)
T 1bpo_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---  278 (494)
T ss_dssp             EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET---
T ss_pred             EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec---
Confidence            66655332222 233333332   78999988653   11     111111    1223457778887777777765   


Q ss_pred             CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001352          554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  612 (1093)
Q Consensus       554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~  612 (1093)
                       -|.|.+||+.++.++..-+-..   ..|...+......-+++....|.|.--.++...
T Consensus       279 -~G~i~lyDleTgt~i~~nrIs~---~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          279 -YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             -TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             -CceEEEEecccceeeeeecccC---CceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence             7789999999999887665444   556555555555566666666666555554433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.35  E-value=0.053  Score=56.54  Aligned_cols=166  Identities=8%  Similarity=0.049  Sum_probs=106.7

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE---CCCCCEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW---SPDGSLLG  413 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~---s~dg~~la  413 (1093)
                      -..+++|.+.+..++++.-..++|..||...+..... .+.  ++..         -......+..+.|   .|++++++
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~--~~s~---------~g~~~~~~sGl~~~~~D~~grL~v   81 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID--GASS---------NGDGEQQMSGLSLLTHDNSKRLFA   81 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT--TTCC---------SSCCSEEEEEEEESSSSSCCEEEE
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC--Cccc---------cCCCcceeeEEEEeccCCCCcEEE
Confidence            4458899886665677766899999999986654432 110  0000         0001124678999   68888877


Q ss_pred             EEE-------------cCCEEEEEEcc---CCCcccceEEecccc-----------ccEEEEEeeCCCCcEEEEEEcCC-
Q 001352          414 VAY-------------SKHIVQLYAYH---GGSDARQQLEIDAHV-----------GNVNDLAFSAPCKQISVITCGDD-  465 (1093)
Q Consensus       414 s~~-------------~d~~i~iwd~~---~~~~~~~~~~~~~h~-----------~~v~~~~~s~d~~~l~l~s~~~d-  465 (1093)
                      +..             .+..|..||+.   +++.+... .+....           .....++..++|+  ..++++.- 
T Consensus        82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~~~  158 (334)
T 2p9w_A           82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFALGM  158 (334)
T ss_dssp             EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEESS
T ss_pred             EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCCCC
Confidence            643             26789999999   77654422 232221           2488999999999  78888877 


Q ss_pred             CcEEEEECCCCceeEEeec------CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC
Q 001352          466 KTIKVWDAVTGSRTYSFEG------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL  520 (1093)
Q Consensus       466 ~~i~vwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~  520 (1093)
                      +.|...+.. |+.+..+..      .....+.|+++|  ++..|++....|.+..+|+...
T Consensus       159 ~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          159 PAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             CEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred             CeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence            887777744 333333211      112255777754  6667777766999999998853

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.30  E-value=0.037  Score=60.03  Aligned_cols=238  Identities=9%  Similarity=0.069  Sum_probs=125.9

Q ss_pred             CeeEEEEccCCC-EEEEEeCCeEEEEEccCceeEEEE-------CCCCCCeEEEEEcCC---CCCEEEEEeC-------C
Q 001352          805 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTI-------MPPSPTATSLAFNPH---DNNVIAIGMD-------D  866 (1093)
Q Consensus       805 ~v~~l~~s~dg~-~la~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~l~~s~~---d~~~lasg~~-------d  866 (1093)
                      ....|+|.|||+ ++++-..|.|++++.. ++....+       .........++++|+   ++.+.++-+.       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            457899999999 7766567999999853 3322111       112345689999993   3444443222       2


Q ss_pred             CeEEEEEcCCc-------ce-eeecc-----cccCCeEEEEEeCCCCEEEEEeCC-------------CcEEEEeCCCCc
Q 001352          867 STILIYNARSS-------EV-ISKLE-----GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWG  920 (1093)
Q Consensus       867 g~i~iwd~~~~-------~~-~~~l~-----~h~~~V~~l~~s~dg~~l~s~s~d-------------g~i~iwd~~~~~  920 (1093)
                      ..|..|++..+       +. +..+.     .|.  ...++|.|||.+.++.+..             |.|.-.+.+..-
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence            35666766532       11 11222     132  3569999999777765442             345555554310


Q ss_pred             ee----------eeeeeecCCCcccCCCCceEEEEcc-CCCEEEEE--eCCeEEEEEcCCcce-----------------
Q 001352          921 IQ----------TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEELTC-----------------  970 (1093)
Q Consensus       921 ~~----------~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~--~d~~i~vwd~~~~~~-----------------  970 (1093)
                      ..          ......  .++.    ....++|.| +|++.++-  .++.=.|.-+..+..                 
T Consensus       176 p~~npf~~~~~~~~~i~a--~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~  249 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWS--YGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI  249 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEE--ECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred             CCCCCCcCCCCCCccEEE--EcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence            00          000111  1111    267899999 66666652  222122222211110                 


Q ss_pred             -----------e-eeeecCCCCCEEEEEEcc-------CCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCc
Q 001352          971 -----------L-KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1031 (1093)
Q Consensus       971 -----------~-~~~~~~h~~~v~~~~fs~-------dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1093)
                                 . ..+.-.+...+..++|..       +|.++++.-..+.|...++..+.......   .+..    ..
T Consensus       250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~~----~~  322 (353)
T 2g8s_A          250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILTD----RG  322 (353)
T ss_dssp             TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESGG----GC
T ss_pred             CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---cccC----CC
Confidence                       0 000001234677788863       57788777777888888888665443322   1111    11


Q ss_pred             cceeEEEeCCCCCCEEEEEe-CCCcEEEEec
Q 001352         1032 VYPHAIAAHPLKPTQFAVGL-TNGEVYVIEP 1061 (1093)
Q Consensus      1032 v~~~~~~~~p~d~~~l~~~~-~dg~v~~w~~ 1061 (1093)
                      -.+..+++.| ||.++++.. .+|  +||.+
T Consensus       323 ~rp~~v~~~p-dG~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          323 QRIRDVRTGP-DGYLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             CCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred             CceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence            2466788999 577665443 334  45555

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.27  E-value=0.12  Score=55.87  Aligned_cols=231  Identities=17%  Similarity=0.141  Sum_probs=117.7

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC---CCEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLLG  413 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d---g~~la  413 (1093)
                      ..+.++|.|||+ |+++ ..+|.|.++| .+|+ .....+.              +..........|+|+|+   +.+|.
T Consensus        30 ~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g~ly   91 (354)
T 3a9g_A           30 VPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKSWVY   91 (354)
T ss_dssp             CEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred             CCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCCEEE
Confidence            678999999997 4554 4569999997 4454 1110100              01223456889999998   55555


Q ss_pred             EEEc----C----CEEEEEEccCCC-cc---cce-EEec-cccccEEEEEeeCCCCcEEEEEEcC-------------CC
Q 001352          414 VAYS----K----HIVQLYAYHGGS-DA---RQQ-LEID-AHVGNVNDLAFSAPCKQISVITCGD-------------DK  466 (1093)
Q Consensus       414 s~~~----d----~~i~iwd~~~~~-~~---~~~-~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~-------------d~  466 (1093)
                      ++..    +    ..|..|+...+. .+   +.+ ..+. +.......++|.|||.  ++++.+.             .|
T Consensus        92 v~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~~G  169 (354)
T 3a9g_A           92 LYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSLAG  169 (354)
T ss_dssp             EEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCCSS
T ss_pred             EEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCCCe
Confidence            5433    2    568888876541 11   111 1122 1112346799999997  5555432             24


Q ss_pred             cEEEEECCCC---------ceeEEeecCCCCeEEeeecccCCccEEEEEecCC---eEEEEEcCCCC-------------
Q 001352          467 TIKVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLG-------------  521 (1093)
Q Consensus       467 ~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~-------------  521 (1093)
                      .|.-.+....         ..+.. .++.. ...++|++. ++.+.++-...+   .|.+.  ..+.             
T Consensus       170 ~I~ri~~dG~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~  244 (354)
T 3a9g_A          170 KILRVDEEGRPPADNPFPNSPIWS-YGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGR  244 (354)
T ss_dssp             EEEEECTTSCCCTTSSSTTCCEEE-ECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCC
T ss_pred             EEEEEcCCCCCCCCCCCCCCcEEE-EccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCC
Confidence            5555554321         01111 23333 345677542 334444332221   13222  1111             


Q ss_pred             -----ceEEecCCCCceEEEEEc-------cCCCEEEEEecCCCCceeEEEEeCCCC-eee--eeeecccccCCCeEEEE
Q 001352          522 -----ARVDYDAPGLGCTRMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEG-AIK--RTYQGLQLQHNSVSVVH  586 (1093)
Q Consensus       522 -----~~~~~~~~~~~v~~~~~s-------~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~~~v~~v~  586 (1093)
                           ....+.........++|.       .+|.++++...    .+.|...++... ...  ..+...  ....+..++
T Consensus       245 ~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~--~~~rp~~v~  318 (354)
T 3a9g_A          245 GEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKN--VFGRLRDVV  318 (354)
T ss_dssp             TTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTT--TSCCEEEEE
T ss_pred             CCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccC--CCCCeeEEE
Confidence                 112221223356778883       56766555432    445777777643 222  122111  125688899


Q ss_pred             EcCCCCEEEEEe
Q 001352          587 FDTAKDQILAAG  598 (1093)
Q Consensus       587 ~~~~~~~l~~~~  598 (1093)
                      +.|||..+++..
T Consensus       319 ~~pDG~lyv~~~  330 (354)
T 3a9g_A          319 IDDDGGILISTS  330 (354)
T ss_dssp             ECTTSCEEEEEC
T ss_pred             ECCCCcEEEEEe
Confidence            999986555543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.15  E-value=0.031  Score=60.59  Aligned_cols=230  Identities=11%  Similarity=0.015  Sum_probs=115.8

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEec---cccccEEEEEeeCC---CCcEEEEEEcCC-----C
Q 001352          398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID---AHVGNVNDLAFSAP---CKQISVITCGDD-----K  466 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~---~h~~~v~~~~~s~d---~~~l~l~s~~~d-----~  466 (1093)
                      .....++|.|||+++++ ..++.|.+++  .++ ......+.   ........++|+|+   +.. ++++-...     +
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~  105 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRN  105 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCcc
Confidence            45678999999985554 5679999998  333 12111111   12346789999998   554 33333322     5


Q ss_pred             cEEEEECCCCc-----ee-EEee---cCCCCeEEeeecccCCccEEEEEec-------------CCeEEEEEcCCC----
Q 001352          467 TIKVWDAVTGS-----RT-YSFE---GHGAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSL----  520 (1093)
Q Consensus       467 ~i~vwd~~~~~-----~~-~~~~---~h~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~vwd~~~~----  520 (1093)
                      .|..++...+.     .+ ..+.   +.......++|.  +||.+.++.+.             .|.|..++.+..    
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~  183 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG--PDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG  183 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC--TTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC--CCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence            78888876542     11 1233   111123567774  46655555432             145555554420    


Q ss_pred             --------CceEEecCCCCceEEEEEcc-CCCEEEEEecCCCC-----ceeEEEEeCCC--------C--------eeee
Q 001352          521 --------GARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEG-----ESFLVEWNESE--------G--------AIKR  570 (1093)
Q Consensus       521 --------~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~-----~~~i~iwd~~~--------~--------~~~~  570 (1093)
                              .....+...-.....++|+| +|++.++-. ..+.     ...|.+.....        +        ..+.
T Consensus       184 npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~-g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~  262 (352)
T 2ism_A          184 NPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH-GPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY  262 (352)
T ss_dssp             CTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE-CC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred             CcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc-CCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence                    00011111122356789999 565544432 2211     01233332111        0        0111


Q ss_pred             eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce------EEEEecCCCCCCCceEEEecCCCEEEEEE
Q 001352          571 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL------LTTIDAGGGLPENPRICFNKNGTLLAVIA  642 (1093)
Q Consensus       571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  642 (1093)
                      .+..    ......++| .++..+++....+.|...++.....      ...+-  .....+..+++.|||.++++..
T Consensus       263 ~~~~----~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          263 FWPQ----GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             ECTT----CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEEC
T ss_pred             ecCC----CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCeeEEEECCCCcEEEEEe
Confidence            1111    124566777 4565555555667777777664331      11221  1123578899999997666654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.12  E-value=0.027  Score=60.42  Aligned_cols=110  Identities=13%  Similarity=0.111  Sum_probs=82.1

Q ss_pred             EEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCC----CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce----
Q 001352          808 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----  879 (1093)
Q Consensus       808 ~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~----  879 (1093)
                      -.....+|.-++++.++.||.-++......+.+...    ...|..+..+| +|++||..+ +..|.|-.+..+..    
T Consensus        25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~  102 (452)
T 3pbp_A           25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED  102 (452)
T ss_dssp             EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred             EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence            345567888899999999999998855555555543    23788999999 999999876 55799988874321    


Q ss_pred             --------eeeccc------ccCCeEEEEEeCC---CCEEEEEeCCCcEEEEeCCCC
Q 001352          880 --------ISKLEG------HSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGW  919 (1093)
Q Consensus       880 --------~~~l~~------h~~~V~~l~~s~d---g~~l~s~s~dg~i~iwd~~~~  919 (1093)
                              ...+.-      ...+|..+.|+|-   +..|++-..|++|++||+...
T Consensus       103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred             cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence                    111111      2567999999995   468999999999999999873

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.09  E-value=0.44  Score=51.17  Aligned_cols=266  Identities=9%  Similarity=0.121  Sum_probs=160.1

Q ss_pred             CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEE
Q 001352          358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE  437 (1093)
Q Consensus       358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~  437 (1093)
                      .+|.|-|+.++..+..+++.                      -.+.-.+|..+.||.-. ..++.|+|+++...++   .
T Consensus        48 ~~vvIiDl~~~~~~~rrpi~----------------------AdsAIMnP~~~iiALra-g~~lQiFnle~K~klk---s  101 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPIS----------------------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMK---A  101 (494)
T ss_dssp             CEEEEEETTSTTSCEEEECC----------------------CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEE---E
T ss_pred             CeEEEEECCCCCcceecccc----------------------cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhc---c
Confidence            47889999887766543321                      22344677777777664 6789999999976444   2


Q ss_pred             eccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC-CceeEEeecCCC--CeEEeeecccCCccEEEEEe-------
Q 001352          438 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYSFEGHGA--PVYSLCPHAKENIHFIFSIS-------  507 (1093)
Q Consensus       438 ~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~-------  507 (1093)
                      .. ....|..=.|-.+.. +-|||   +..|+-|++.. ..+.+.|..|..  ...-+.+..+++.++++..+       
T Consensus       102 ~~-~~e~VvfWkWis~~~-l~lVT---~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~  176 (494)
T 1bpo_A          102 HT-MTDDVTFWKWISLNT-VALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR  176 (494)
T ss_dssp             EE-CSSCCCEEEEEETTE-EEEEC---SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTE
T ss_pred             ee-cCCCceEEEecCCCe-EEEEc---CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCc
Confidence            22 234566667766543 23333   55799999874 356666665542  22223333455666665443       


Q ss_pred             cCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC---CEEEEEecCCCCceeEEEEeCCCC---e------eeeeeecc
Q 001352          508 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---RRLFSCGTSKEGESFLVEWNESEG---A------IKRTYQGL  575 (1093)
Q Consensus       508 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~---~~l~~~~~~~~~~~~i~iwd~~~~---~------~~~~~~~~  575 (1093)
                      ..|.+.+|..+.. ....+++|......+.+..+.   ..+..+..... .+.+.+.++...   .      .+..+-..
T Consensus       177 v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~-g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp  254 (494)
T 1bpo_A          177 VVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA-GGKLHIIEVGTPPTGNQPFPKKAVDVFFPP  254 (494)
T ss_dssp             EEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT-CCEEEEEECSCCCTTCCCCCCEEEECCCCT
T ss_pred             ccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCC-CcEEEEEEcCCCccCCCCccceeeeeeCCc
Confidence            2467888887653 334455555444333332211   23333332222 367888887542   1      11111122


Q ss_pred             cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352          576 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       576 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      ....+-..++..++.-..++.-+.-|.+.+||++++.++..-.....  .|...+.+....-++.....|.|.-..+...
T Consensus       255 e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             ccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            22235567788888888899999999999999999999987765433  3444455555555666678888887777766


Q ss_pred             cee
Q 001352          656 NSV  658 (1093)
Q Consensus       656 ~~~  658 (1093)
                      ..+
T Consensus       333 ~iv  335 (494)
T 1bpo_A          333 NII  335 (494)
T ss_dssp             THH
T ss_pred             cch
Confidence            443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.00  E-value=0.13  Score=54.40  Aligned_cols=237  Identities=10%  Similarity=-0.056  Sum_probs=118.7

Q ss_pred             eEEEEEccC--CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC----CEEE
Q 001352          349 TLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK----HIVQ  422 (1093)
Q Consensus       349 ~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d----~~i~  422 (1093)
                      +|++.|+.+  ..+.+||..+++-.....                 +......-.++.+  +++.++.|+.+    ..+.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~-----------------~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~   73 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRC-----------------PFEKRRDAACVFW--DNVVYILGGSQLFPIKRMD   73 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCC-----------------CSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEE
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCC-----------------CCcccceeEEEEE--CCEEEEEeCCCCCCcceEE
Confidence            577777753  568888888765432111                 1111112222222  67777777754    5788


Q ss_pred             EEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC------CcEEEEECCCCceeEEee--cCCCCeEEeee
Q 001352          423 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVTGSRTYSFE--GHGAPVYSLCP  494 (1093)
Q Consensus       423 iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~  494 (1093)
                      +||..+++-.. ...+.........+.  -+++  +++.|+.+      ..+.+||..+.+-...-.  .....-..+.+
T Consensus        74 ~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~  148 (306)
T 3ii7_A           74 CYNVVKDSWYS-KLGPPTPRDSLAACA--AEGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA  148 (306)
T ss_dssp             EEETTTTEEEE-EECCSSCCBSCEEEE--ETTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred             EEeCCCCeEEE-CCCCCccccceeEEE--ECCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE
Confidence            99988764211 111111111111222  2555  56666654      458899988876433211  11111111111


Q ss_pred             cccCCccEEEEEec---------CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC-CceeEEEEeCC
Q 001352          495 HAKENIHFIFSISV---------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-GESFLVEWNES  564 (1093)
Q Consensus       495 ~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~-~~~~i~iwd~~  564 (1093)
                          ++.+++.|+.         -..+.+||+.+..-...-..+.......+..-+++.++.++.+.. ....+.+||+.
T Consensus       149 ----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~  224 (306)
T 3ii7_A          149 ----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIK  224 (306)
T ss_dssp             ----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETT
T ss_pred             ----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCC
Confidence                4456666654         344788888765432222222221111222236667777654321 12458899998


Q ss_pred             CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEE
Q 001352          565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTT  616 (1093)
Q Consensus       565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~  616 (1093)
                      +.+-...-.... ......++.+  ++..++.|+.+     ..+.+||..+.+....
T Consensus       225 ~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~  278 (306)
T 3ii7_A          225 LNEWKMVSPMPW-KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVAN  278 (306)
T ss_dssp             TTEEEECCCCSC-CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred             CCcEEECCCCCC-CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence            875443321111 1122233333  55666667743     5688999988765443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.99  E-value=0.036  Score=58.66  Aligned_cols=196  Identities=9%  Similarity=-0.034  Sum_probs=98.9

Q ss_pred             CCCEEEEEEcC-----CEEEEEEccCCCc--ccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-----CcEEEEECCC
Q 001352          408 DGSLLGVAYSK-----HIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVT  475 (1093)
Q Consensus       408 dg~~las~~~d-----~~i~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~  475 (1093)
                      +++.++.|+.+     ..+.+||..+++.  ......+......-..+.+  +++  +++.|+.+     ..+.+||+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDM--IYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCE--EEEEcccCCCcccceEEEEcCCC
Confidence            57777777654     3589999988651  1111111111111112222  455  56666643     3588999888


Q ss_pred             CceeEE--eecCCCCeEEeeecccCCccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001352          476 GSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  548 (1093)
Q Consensus       476 ~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~  548 (1093)
                      .+-...  +......-..+.+    ++.+++.|+.+     ..+.+||+.+..-...-..+.......+..-+++.++.+
T Consensus       138 ~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G  213 (301)
T 2vpj_A          138 DQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVG  213 (301)
T ss_dssp             TEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred             CeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEe
Confidence            764432  2111111111111    44667777654     457888887654332222222221112222366777777


Q ss_pred             ecCCCC-ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceE
Q 001352          549 GTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLL  614 (1093)
Q Consensus       549 ~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~  614 (1093)
                      +.+... ...+.+||+.+.+....-.... .......+.+  ++..++.|+.+     ..+.+||..+.+..
T Consensus       214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTT-PRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             CBCSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             CCCCCcccceEEEEeCCCCcEEECCCCCC-cccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            654322 3468999998876543322111 1112222332  55666667654     45788888876554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.97  E-value=0.047  Score=57.78  Aligned_cols=235  Identities=11%  Similarity=-0.005  Sum_probs=118.5

Q ss_pred             CCCEEEEEE-cC-----CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-----CcEEEEECCCC
Q 001352          408 DGSLLGVAY-SK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG  476 (1093)
Q Consensus       408 dg~~las~~-~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~  476 (1093)
                      ++..++.|+ .+     ..+.+||..+++-.. ...+....... ++ ...+++  +++.|+.+     ..+.+||..++
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~-~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~   88 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYV-AS-VSLHDR--IYVIGGYDGRSRLSSVECLDYTAD   88 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSC-EE-EEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccc-cE-EEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence            455666666 33     358889988754211 11111111111 12 223454  56667654     46899998887


Q ss_pred             c---eeEE--eecCCCCeEEeeecccCCccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001352          477 S---RTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF  546 (1093)
Q Consensus       477 ~---~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~  546 (1093)
                      +   -...  +......-..+.+    ++.+++.|+.+     ..+.+||..+.+-...-..+.......+..-+++.++
T Consensus        89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv  164 (301)
T 2vpj_A           89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC  164 (301)
T ss_dssp             TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred             CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence            6   3322  1111111111111    44566776654     3578888776543322222222111122223677777


Q ss_pred             EEecCCC-CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEecC
Q 001352          547 SCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAG  620 (1093)
Q Consensus       547 ~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~  620 (1093)
                      .++.++. ....+..||+.+.+-...-.... .......+.+  ++..++.|+.+     ..+.+||+.+.+....-...
T Consensus       165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  241 (301)
T 2vpj_A          165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT  241 (301)
T ss_dssp             ECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred             ECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence            7665332 13458899998876543321111 1112222222  45566666653     56899999988765543322


Q ss_pred             CCCCCCceEEEecCCCEEEEEECC-----CeEEEEEcCCCc
Q 001352          621 GGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESN  656 (1093)
Q Consensus       621 ~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~  656 (1093)
                      ..  .....+..-++++++.|+.+     ..+.+||..+.+
T Consensus       242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            21  12222333367777777654     457788887664

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.95  E-value=0.55  Score=49.93  Aligned_cols=100  Identities=11%  Similarity=0.123  Sum_probs=58.9

Q ss_pred             CeeEEEEccCCCEEEEEe--CCeEEEEEccCcee------------------EEEECCCCCCeEEEEEcCCCCCEEEEEe
Q 001352          805 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------------ILTIMPPSPTATSLAFNPHDNNVIAIGM  864 (1093)
Q Consensus       805 ~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~------------------~~~~~~~~~~i~~l~~s~~d~~~lasg~  864 (1093)
                      ....++|.|+|.+.++-.  ++.-.|--+..|..                  +..+..+......++|..  +.++....
T Consensus       203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l  280 (347)
T 3das_A          203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGL  280 (347)
T ss_dssp             BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEES
T ss_pred             CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeeccc
Confidence            345789999887766543  23233333332221                  122222223556777864  55666666


Q ss_pred             CCCeEEEEEcCCcce----eeecccccCCeEEEEEeCCCCEEEEEe
Q 001352          865 DDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSG  906 (1093)
Q Consensus       865 ~dg~i~iwd~~~~~~----~~~l~~h~~~V~~l~~s~dg~~l~s~s  906 (1093)
                      ..+.|....+..+..    ...+.+..+++..|+..|||.++++.+
T Consensus       281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            666777777765432    233445557899999999998777654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.87  E-value=0.61  Score=51.69  Aligned_cols=113  Identities=17%  Similarity=0.112  Sum_probs=76.8

Q ss_pred             CeeEEEEccCCCEEEEEe--CCeEEEEEccCc------ee-------EEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeE
Q 001352          805 AVPCFALSKNDAYLFSAS--GGVISLYIVMTF------KT-------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI  869 (1093)
Q Consensus       805 ~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~------~~-------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i  869 (1093)
                      ..-.+.++|||+++++++  +.++.++|++..      +.       ..... ..-.....+|.+ +|....+-.-|..|
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv  401 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV  401 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence            344688999999999998  688999998742      11       11222 334667899999 78666667789999


Q ss_pred             EEEEcCCc----------ceeeecccccCCeEEEEE------eCCCCEEEEEe---CCCc----------EEEEeCCCCc
Q 001352          870 LIYNARSS----------EVISKLEGHSKRVTGLVF------SDALNILVSSG---GDAQ----------IFVWDVDGWG  920 (1093)
Q Consensus       870 ~iwd~~~~----------~~~~~l~~h~~~V~~l~~------s~dg~~l~s~s---~dg~----------i~iwd~~~~~  920 (1093)
                      .-|++...          ..+.++.-|-.+ -.+.-      .|||++|++..   .|+.          -.+.|++..+
T Consensus       402 vkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk  480 (638)
T 3sbq_A          402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE  480 (638)
T ss_dssp             EEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred             EEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence            99999753          344555545432 22322      47999999874   4554          3677777654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.83  E-value=0.069  Score=56.62  Aligned_cols=233  Identities=10%  Similarity=0.003  Sum_probs=123.6

Q ss_pred             CEEEEEe---CCeEEEEEccCceeEE--EECCCCCCeEEEEEcCCCCCEEEEEeCC----CeEEEEEcCCcce--eeecc
Q 001352          816 AYLFSAS---GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEV--ISKLE  884 (1093)
Q Consensus       816 ~~la~~~---dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~i~iwd~~~~~~--~~~l~  884 (1093)
                      .+++.|+   ...+.+||..+.+-..  .+.........+.+   ++++++.|+.+    ..+.+||+.+.+-  +..+.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            3445554   2568999988764322  22222222223332   56788888765    5789999987642  22332


Q ss_pred             cccCCeEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-e-
Q 001352          885 GHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-  956 (1093)
Q Consensus       885 ~h~~~V~~l~~s~dg~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~-  956 (1093)
                      .....-..+.+  ++++++.|+.+      ..+.+||..+.+-.....  .+..      .....+..-++++.+.| . 
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~------r~~~~~~~~~~~iyv~GG~~  159 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS--MLTQ------RCSHGMVEANGLIYVCGGSL  159 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC--CSSC------CBSCEEEEETTEEEEECCEE
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC--CcCC------cceeEEEEECCEEEEECCCC
Confidence            21222222222  67788888765      458899998865333211  1111      11122233466666663 2 


Q ss_pred             --------CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceEEEecccccc
Q 001352          957 --------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYL 1023 (1093)
Q Consensus       957 --------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~d-----g~v~vwd~~~~~~~~~~~~~~~~ 1023 (1093)
                              -..+.+||..+.+-...-.... .+....+..-++++++.|+.+     ..+.+||+.+.+....    ..+
T Consensus       160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~  234 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV----SPM  234 (306)
T ss_dssp             SCTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC----CCC
T ss_pred             CCCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC----CCC
Confidence                    3458899998875433211111 111111222377777777654     3588999988754421    122


Q ss_pred             CCCCCCCccceeEEEeCCCCCCEEEEEeCC-----CcEEEEecCCCCCCcccCCCcc
Q 001352         1024 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPPDE 1075 (1093)
Q Consensus      1024 ~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d-----g~v~~w~~~~~~~~~~~~~~~~ 1075 (1093)
                      +..     .....++..  ++.+++.|+.+     ..+.+||+  ...+|...++.+
T Consensus       235 p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~  282 (306)
T 3ii7_A          235 PWK-----GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT--ETDKWVANSKVR  282 (306)
T ss_dssp             SCC-----BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET--TTTEEEEEEEEE
T ss_pred             CCC-----ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC--CCCeEEeCCCcc
Confidence            222     111122222  36788888865     45677776  445688765443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.79  E-value=0.076  Score=56.16  Aligned_cols=235  Identities=12%  Similarity=0.046  Sum_probs=115.9

Q ss_pred             CCEEEEEEcC----CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-----CcEEEEECCCCcee
Q 001352          409 GSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGSRT  479 (1093)
Q Consensus       409 g~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~~~~  479 (1093)
                      +..++.|+.+    ..+.+||..+++- .....+......- +++. -++.  +++.|+.+     ..+.+||..+.+-.
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~   90 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERW-HQVAELPSRRCRA-GMVY-MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT   90 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEE-EEECCCSSCCBSC-EEEE-ETTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcE-eEcccCCcccccc-eEEE-ECCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence            4455555532    3588888887542 1111111111111 1222 2454  56666654     35889998877643


Q ss_pred             EEe--ecCCCCeEEeeecccCCccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          480 YSF--EGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       480 ~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      ..-  ......-..+.+    ++.+++.|+.++     .+.+||+.+..-...-..+.......+..-+++.++.++.+.
T Consensus        91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  166 (302)
T 2xn4_A           91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDV  166 (302)
T ss_dssp             EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred             eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCC
Confidence            321  111111111222    446777777654     467777766543222111211111112223667777766533


Q ss_pred             CC---ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEecCCCCC
Q 001352          553 EG---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLP  624 (1093)
Q Consensus       553 ~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~  624 (1093)
                      ..   ...+.+||+.+.+-...-.... .......+.+  ++..++.|+.+     ..+.+||..+.+....-.....  
T Consensus       167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--  241 (302)
T 2xn4_A          167 ASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC--  241 (302)
T ss_dssp             TTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred             CCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence            22   3458899998876543321111 1112222222  45666667654     4689999988776544332211  


Q ss_pred             CCceEEEecCCCEEEEEECCC-----eEEEEEcCCCce
Q 001352          625 ENPRICFNKNGTLLAVIANEN-----RIKILETPESNS  657 (1093)
Q Consensus       625 ~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~  657 (1093)
                      .....+..-++++++.|+.++     .+.+||..+.+.
T Consensus       242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            122223333677777776543     478888876643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.78  E-value=0.31  Score=52.61  Aligned_cols=239  Identities=8%  Similarity=0.008  Sum_probs=120.4

Q ss_pred             CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEE----eccccccEEEEEeeCC---CCcEEEEEEcC------
Q 001352          398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE----IDAHVGNVNDLAFSAP---CKQISVITCGD------  464 (1093)
Q Consensus       398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~----~~~h~~~v~~~~~s~d---~~~l~l~s~~~------  464 (1093)
                      .....|+|.|||++|.++...|.|++++... .....+..    ..........++|+|+   +.. +.++-..      
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCC
Confidence            3578999999999444556789999998543 21111101    1112345789999996   554 3333222      


Q ss_pred             -CCcEEEEECCCC--c--eeEE-eec------CCCCeEEeeecccCCccEEEEEec-------------CCeEEEEEcCC
Q 001352          465 -DKTIKVWDAVTG--S--RTYS-FEG------HGAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDS  519 (1093)
Q Consensus       465 -d~~i~vwd~~~~--~--~~~~-~~~------h~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~vwd~~~  519 (1093)
                       ...|..|+...+  +  .... +..      .......++|.  +||.+.++.+.             .|.|.-++.+.
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG  173 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG  173 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence             235666666533  1  1111 111      11123457774  46655555433             24566666543


Q ss_pred             CC------------ceEEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCCCee------------------
Q 001352          520 LG------------ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAI------------------  568 (1093)
Q Consensus       520 ~~------------~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~------------------  568 (1093)
                      .-            ....+...-.....++|.| +|++.++ -...++...|.+.  ..+.-                  
T Consensus       174 ~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i--~~G~nyGwp~~~~~~~~~~~~~~  250 (353)
T 2g8s_A          174 EIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN-EHGPRGGDEINIP--QKGKNYGWPLATWGINYSGFKIP  250 (353)
T ss_dssp             CCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE-EECSBSCEEEECC--CTTCBCCTTTBCSSBCTTSSCCT
T ss_pred             CCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE-ecCCCCCcEEeEe--ccCCcCCCCCccCCCCCCCCccC
Confidence            20            1111222223567899999 5554443 3222211223221  11110                  


Q ss_pred             -------------eeeeecccccCCCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCceEEEEec-CCCCCCCc
Q 001352          569 -------------KRTYQGLQLQHNSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-GGGLPENP  627 (1093)
Q Consensus       569 -------------~~~~~~~~~~~~~v~~v~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~  627 (1093)
                                   +..+..    ......+.|..       ++.++++.-..+.|...++..++....... ......+.
T Consensus       251 ~~~~~~~~~~~~P~~~~~~----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~  326 (353)
T 2g8s_A          251 EAKGEIVAGTEQPVFYWKD----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIR  326 (353)
T ss_dssp             TCCBSSCTTSCCCSEEESS----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEE
T ss_pred             cccCCCCCCccCCeEEeCC----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCcee
Confidence                         000110    12456677753       456666666777888888776654433221 11123578


Q ss_pred             eEEEecCCCEEEEEE-CCCeE
Q 001352          628 RICFNKNGTLLAVIA-NENRI  647 (1093)
Q Consensus       628 ~v~~s~~~~~l~~~~-~dg~i  647 (1093)
                      .+++.|||.++++.. .+|.|
T Consensus       327 ~v~~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          327 DVRTGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             EEEECTTSCEEEEECSTTEEE
T ss_pred             EEEECCCCcEEEEEeCCCCEE
Confidence            899999998665433 34433

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.74  E-value=0.12  Score=54.50  Aligned_cols=232  Identities=10%  Similarity=0.045  Sum_probs=120.8

Q ss_pred             CCCEEEEEe-C----CeEEEEEccCceeEEEECCCCCCe-EEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCcce--e
Q 001352          814 NDAYLFSAS-G----GVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEV--I  880 (1093)
Q Consensus       814 dg~~la~~~-d----g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~d~~~lasg~~dg-----~i~iwd~~~~~~--~  880 (1093)
                      ++.+++.|+ +    ..+.+||..+.+-...-..+.... .+++..  ++++++.|+.++     .+.+||..+.+-  +
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence            344555554 1    458889988765322211111111 122222  567777777553     688999887642  2


Q ss_pred             eecccccCCeEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE
Q 001352          881 SKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV  955 (1093)
Q Consensus       881 ~~l~~h~~~V~~l~~s~dg~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~  955 (1093)
                      ..+......-..+.  -++++++.|+.++     .+.+||+.+.+-.....+  +..      .....+..-++++.+.|
T Consensus        93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~------r~~~~~~~~~~~iyv~G  162 (302)
T 2xn4_A           93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM--NTR------RSSVGVGVVGGLLYAVG  162 (302)
T ss_dssp             CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC--SSC------CBSCEEEEETTEEEEEC
T ss_pred             CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC--CCc------ccCceEEEECCEEEEEe
Confidence            22222222222222  2677888887654     477888887653332111  111      11112222366666663


Q ss_pred             -e-------CCeEEEEEcCCcceeeeeecCC-CCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceEEEecccc
Q 001352          956 -H-------ETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTA 1021 (1093)
Q Consensus       956 -~-------d~~i~vwd~~~~~~~~~~~~~h-~~~v~~~~fs~dg~~l~t~~~d-----g~v~vwd~~~~~~~~~~~~~~ 1021 (1093)
                       .       -..+.+||..+.+-...-.... ......  ...++++++.|+.+     ..+.+||+.+.+.... .   
T Consensus       163 G~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~---  236 (302)
T 2xn4_A          163 GYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGV--GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV-A---  236 (302)
T ss_dssp             CEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEE--EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEE-C---
T ss_pred             CCCCCCCccccEEEEEeCCCCcEEECCCCccccccccE--EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeC-C---
Confidence             2       2358899998775433211111 111112  22377888888765     3688999988755422 1   


Q ss_pred             ccCCCCCCCccceeEEEeCCCCCCEEEEEeCCC-----cEEEEecCCCCCCcccCC
Q 001352         1022 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLP 1072 (1093)
Q Consensus      1022 ~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~ 1072 (1093)
                      ..+..     .....++..  ++..++.|+.++     .+.+||+..  .+|...+
T Consensus       237 ~~~~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~  283 (302)
T 2xn4_A          237 DMNMC-----RRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTT--DKWTVVS  283 (302)
T ss_dssp             CCSSC-----CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT--TEEEECS
T ss_pred             CCCCc-----cccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCC--CeEEECC
Confidence            12222     111122222  367888888764     478888754  5688765

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=96.72  E-value=0.0013  Score=52.47  Aligned_cols=35  Identities=34%  Similarity=0.569  Sum_probs=32.5

Q ss_pred             CCchhHHHHHHHHHhhhhcChHHHHHHHHHhcCCC
Q 001352            1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFY   35 (1093)
Q Consensus         1 ~~~~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~   35 (1093)
                      |+....||-+||..||+|.||..||-+|+.||++.
T Consensus         1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~   35 (90)
T 2xtc_A            1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS   35 (90)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence            78899999999999999999999999999999973

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.68  E-value=0.44  Score=50.65  Aligned_cols=197  Identities=13%  Similarity=0.089  Sum_probs=108.2

Q ss_pred             CCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeE--EEEC----CCCCCeEEEEEcCC---CCCEEEEE--eCCCeEEE
Q 001352          804 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTIM----PPSPTATSLAFNPH---DNNVIAIG--MDDSTILI  871 (1093)
Q Consensus       804 ~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~--~~~~----~~~~~i~~l~~s~~---d~~~lasg--~~dg~i~i  871 (1093)
                      .....|+|.|||.++++-. .|.|++++..+++..  ..+.    ........++|+|+   ++.+.++-  ..++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            4567999999999888887 699999987655432  2221    22456789999993   24333321  24556666


Q ss_pred             EEcCCc----------ce-eeecc---cccCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEeCCCCceee-
Q 001352          872 YNARSS----------EV-ISKLE---GHSKRVTGLVFSDALNILVSSGG-------------DAQIFVWDVDGWGIQT-  923 (1093)
Q Consensus       872 wd~~~~----------~~-~~~l~---~h~~~V~~l~~s~dg~~l~s~s~-------------dg~i~iwd~~~~~~~~-  923 (1093)
                      |.+..+          +. +..+.   .|.  ...|+|.|||.+.++.+.             .|.|.-.+.+.. ... 
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~-ip~~  188 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE-PAPG  188 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS-BCTT
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC-ccCC
Confidence            766542          11 11222   233  356999999998888653             233333343321 000 


Q ss_pred             -----eeeeecCCCcccCCCCceEEEEccCCCEEEE--EeCCeEEEEEcCCcce------------------eeeeecCC
Q 001352          924 -----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTC------------------LKQWFPIS  978 (1093)
Q Consensus       924 -----~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~------------------~~~~~~~h  978 (1093)
                           .....  .++.    ....++|.|+|.+.++  +.++.-.|--+..|..                  +..+.. +
T Consensus       189 nPf~~~~i~a--~G~R----Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~-~  261 (347)
T 3das_A          189 NPFPGSPVYS--YGHR----NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST-D  261 (347)
T ss_dssp             CSSTTCCEEE--BCCS----BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT-T
T ss_pred             CCCCCCeEEe--eCCC----CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC-C
Confidence                 00111  1222    2678999999988777  3443223332222211                  111111 1


Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001352          979 SVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus       979 ~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
                      ......++|. +|.+++..-..+.|....+..+
T Consensus       262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~  293 (347)
T 3das_A          262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGT  293 (347)
T ss_dssp             TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETT
T ss_pred             CCCCcceEEE-cCceeeccccCCEEEEEEecCC
Confidence            1356677776 4666665555556666666554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.63  E-value=0.17  Score=53.81  Aligned_cols=227  Identities=10%  Similarity=-0.030  Sum_probs=112.7

Q ss_pred             CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC-----C------CcEEEEECCCCceeEEeecCCC
Q 001352          419 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D------KTIKVWDAVTGSRTYSFEGHGA  487 (1093)
Q Consensus       419 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-----d------~~i~vwd~~~~~~~~~~~~h~~  487 (1093)
                      ..+.+||..+++-..  ..+.....+....+...+++  +++.|+.     .      ..+.+||..+++-.. +..-..
T Consensus        13 ~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~   87 (315)
T 4asc_A           13 EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPS   87 (315)
T ss_dssp             TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSS
T ss_pred             CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCc
Confidence            568999998865221  22222222233333344555  5666663     1      127788988876432 211111


Q ss_pred             CeE--EeeecccCCccEEEEEecC--------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC--CCc
Q 001352          488 PVY--SLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--EGE  555 (1093)
Q Consensus       488 ~v~--~~~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~--~~~  555 (1093)
                      +-.  +++.  . ++.+++.|+.+        ..+.+||..+.+=...-..+.......+..-+++.++.++...  ...
T Consensus        88 ~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  164 (315)
T 4asc_A           88 PRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL  164 (315)
T ss_dssp             CEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBC
T ss_pred             chhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCccc
Confidence            111  1111  1 44566666632        3478888876532221111222222222334666667766421  123


Q ss_pred             eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352          556 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGLPENPRIC  630 (1093)
Q Consensus       556 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  630 (1093)
                      ..+.+||+.+.+-...-.... ......++.+  ++..++.|+.++     .+.+||+.+.+....-.....  .....+
T Consensus       165 ~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~  239 (315)
T 4asc_A          165 NKMCVYDPKKFEWKELAPMQT-ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE--RSSLSL  239 (315)
T ss_dssp             CCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--CBSCEE
T ss_pred             ceEEEEeCCCCeEEECCCCCC-chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--ccceeE
Confidence            458999998875443221111 1112222222  556666676544     588999988766554332221  122222


Q ss_pred             EecCCCEEEEEECC--------------CeEEEEEcCCCcee
Q 001352          631 FNKNGTLLAVIANE--------------NRIKILETPESNSV  658 (1093)
Q Consensus       631 ~s~~~~~l~~~~~d--------------g~i~iw~~~~~~~~  658 (1093)
                      ..-++++++.|+.+              ..+.+||..+.+..
T Consensus       240 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  281 (315)
T 4asc_A          240 VSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE  281 (315)
T ss_dssp             EEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred             EEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence            33367777777753              24677888776443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.60  E-value=0.22  Score=52.91  Aligned_cols=230  Identities=10%  Similarity=0.068  Sum_probs=120.6

Q ss_pred             CCeEEEEEccCceeEE-EECCCCCCeEEEEEcCCCCCEEEEEeC-----C------CeEEEEEcCCcce--eeecccccC
Q 001352          823 GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD-----D------STILIYNARSSEV--ISKLEGHSK  888 (1093)
Q Consensus       823 dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~-----d------g~i~iwd~~~~~~--~~~l~~h~~  888 (1093)
                      ...+.+||..+.+-.. .+..+.......+... ++++++.|+.     .      ..+.+||..+.+-  +..+.....
T Consensus        12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~   90 (315)
T 4asc_A           12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC   90 (315)
T ss_dssp             TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred             CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence            3678999998776332 2222223333334444 6778888873     1      1378889887643  222221111


Q ss_pred             CeEEEEEeCCCCEEEEEeCC--------CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-e-C-
Q 001352          889 RVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E-  957 (1093)
Q Consensus       889 ~V~~l~~s~dg~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~-d-  957 (1093)
                      .-..+.+  ++++++.|+.+        ..+.+||..+.+-.....  .+..      .....+...++++++.| . + 
T Consensus        91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~------r~~~~~~~~~~~iyv~GG~~~~  160 (315)
T 4asc_A           91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP--LPYV------VYGHTVLSHMDLVYVIGGKGSD  160 (315)
T ss_dssp             SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--CSSC------CBSCEEEEETTEEEEECCBCTT
T ss_pred             ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--CCCc------ccceeEEEECCEEEEEeCCCCC
Confidence            1122222  66777777743        358899998865332111  1111      12223333566666664 3 2 


Q ss_pred             ----CeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEEcCCCceEEEeccccccCCCCC
Q 001352          958 ----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQCRILSTAYLRPTTS 1028 (1093)
Q Consensus       958 ----~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~ 1028 (1093)
                          ..+.+||..+.+-...-... ..+....+..-++++++.|+.++     .+.+||+.+.+.... .   ..+..  
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~~p~~--  233 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF-E---AFPQE--  233 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE-C---CCSSC--
T ss_pred             CcccceEEEEeCCCCeEEECCCCC-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEEC-C---CCCCc--
Confidence                46999999877543321111 11111112233778888888664     488899988754422 1   12222  


Q ss_pred             CCccceeEEEeCCCCCCEEEEEeCCC--------------cEEEEecCCCCCCcccCCCcccc
Q 001352         1029 CLHVYPHAIAAHPLKPTQFAVGLTNG--------------EVYVIEPNEPGDTWAVLPPDEIV 1077 (1093)
Q Consensus      1029 ~~~v~~~~~~~~p~d~~~l~~~~~dg--------------~v~~w~~~~~~~~~~~~~~~~~~ 1077 (1093)
                         ....+++..  ++.+++.|+.++              .+.+||+  ...+|...+|.+..
T Consensus       234 ---r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~r~  289 (315)
T 4asc_A          234 ---RSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNE--EEKKWEGVLREIAY  289 (315)
T ss_dssp             ---CBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET--TTTEEEEEESCSSC
T ss_pred             ---ccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecC--CCChhhhhccCCcC
Confidence               111122222  357888888743              3556665  44578877655533

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.48  E-value=1.2  Score=47.53  Aligned_cols=207  Identities=10%  Similarity=0.046  Sum_probs=113.5

Q ss_pred             CeEEEEECCCCCEEEEEE------------cCCEEEEEEccCCCc-ccceEEecc-----ccccEEEEEeeC--CCCcEE
Q 001352          399 SVNRVVWSPDGSLLGVAY------------SKHIVQLYAYHGGSD-ARQQLEIDA-----HVGNVNDLAFSA--PCKQIS  458 (1093)
Q Consensus       399 ~V~~v~~s~dg~~las~~------------~d~~i~iwd~~~~~~-~~~~~~~~~-----h~~~v~~~~~s~--d~~~l~  458 (1093)
                      ..-.++..|+|..+++++            .+|.|.++|..+... ...+ .+.+     .......+.+.+  ++...+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            445566788886666552            689999999874321 2222 2333     234566777755  454213


Q ss_pred             EEEEcC--CCcEEEEECCCCce----eEEeecC-CCCeEEeeecccCCccEEEEEe-----------------cCCeEEE
Q 001352          459 VITCGD--DKTIKVWDAVTGSR----TYSFEGH-GAPVYSLCPHAKENIHFIFSIS-----------------VDGKIKA  514 (1093)
Q Consensus       459 l~s~~~--d~~i~vwd~~~~~~----~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~-----------------~dg~i~v  514 (1093)
                      +++-..  +.+|.+|++..+..    +.++.+. -...+.+.+.+  +|.+.++..                 ..|.|..
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            333222  56788887765322    2334332 23466777743  555655543                 1234444


Q ss_pred             EEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-Cee--eeeeecccccCCCeEEEEEcC-C
Q 001352          515 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-A  590 (1093)
Q Consensus       515 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~v~~~~-~  590 (1093)
                      ++.  .+.. .....-...+.++|+||++.++++...   ...|+.|++.. +..  .+.+. .   ....-.+++.+ +
T Consensus       208 ~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~---~~~I~~~~~~~~g~l~~~~~~~-~---~g~PDGi~vD~e~  277 (355)
T 3sre_A          208 YSP--NDVR-VVAEGFDFANGINISPDGKYVYIAELL---AHKIHVYEKHANWTLTPLRVLS-F---DTLVDNISVDPVT  277 (355)
T ss_dssp             ECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEECTTSCEEEEEEEE-C---SSEEEEEEECTTT
T ss_pred             EEC--CeEE-EeecCCcccCcceECCCCCEEEEEeCC---CCeEEEEEECCCCcEecCEEEe-C---CCCCceEEEeCCC
Confidence            443  3222 222222346789999999998887642   55699998753 332  22331 1   25677889999 5


Q ss_pred             CCEEEEEeCC-CcEEEEECC--CCceEEEEe
Q 001352          591 KDQILAAGDD-HVIKIWDMN--KVQLLTTID  618 (1093)
Q Consensus       591 ~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~  618 (1093)
                      |+..+++..+ +.|..|+..  .+..+..+.
T Consensus       278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence            8877766533 344444443  234444443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.32  E-value=0.58  Score=49.98  Aligned_cols=188  Identities=9%  Similarity=0.088  Sum_probs=108.8

Q ss_pred             EEEEEeeCCCCcEEEEEE------------cCCCcEEEEECCC--Ccee-EEeec-----CCCCeEEeeecccCCc--cE
Q 001352          445 VNDLAFSAPCKQISVITC------------GDDKTIKVWDAVT--GSRT-YSFEG-----HGAPVYSLCPHAKENI--HF  502 (1093)
Q Consensus       445 v~~~~~s~d~~~l~l~s~------------~~d~~i~vwd~~~--~~~~-~~~~~-----h~~~v~~~~~~~~~~~--~~  502 (1093)
                      .-+++..|+|.  .++++            ..+|.|.++|..+  ++.. ..+.+     .......+.+..+.++  .+
T Consensus        52 ~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           52 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             cceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            34566677664  44443            2689999999874  2321 12222     1235566666554334  24


Q ss_pred             EEEEec--CCeEEEEEcCCCCceE----EecC-CCCceEEEEEccCCCEEEEEec---C----------CCCceeEEEEe
Q 001352          503 IFSISV--DGKIKAWLYDSLGARV----DYDA-PGLGCTRMAYSANGRRLFSCGT---S----------KEGESFLVEWN  562 (1093)
Q Consensus       503 l~s~~~--dg~i~vwd~~~~~~~~----~~~~-~~~~v~~~~~s~d~~~l~~~~~---~----------~~~~~~i~iwd  562 (1093)
                      +++-..  +.+|.+|+++......    .+.. .-...+.+.+.++|++.++...   +          +...+.|+.+|
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            444333  5678888887654332    2222 2235789999999997776531   0          12346677777


Q ss_pred             CCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-CceE--EEEecCCCCCCCceEEEec-CCCE
Q 001352          563 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNK-VQLL--TTIDAGGGLPENPRICFNK-NGTL  637 (1093)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~--~~~~~~~~~~~v~~v~~s~-~~~~  637 (1093)
                      ..  +......+.    ...+.++|+||++.++.+. ..+.|+.|++.. ++..  ..+...   ...-.+++.+ +|++
T Consensus       210 ~~--~~~~~~~~l----~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~---g~PDGi~vD~e~G~l  280 (355)
T 3sre_A          210 PN--DVRVVAEGF----DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD---TLVDNISVDPVTGDL  280 (355)
T ss_dssp             TT--CCEEEEEEE----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS---SEEEEEEECTTTCCE
T ss_pred             CC--eEEEeecCC----cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCC---CCCceEEEeCCCCcE
Confidence            63  332222222    4678999999998887754 678899999863 3332  233221   2245678888 5877


Q ss_pred             EEEEEC
Q 001352          638 LAVIAN  643 (1093)
Q Consensus       638 l~~~~~  643 (1093)
                      .+++..
T Consensus       281 wva~~~  286 (355)
T 3sre_A          281 WVGCHP  286 (355)
T ss_dssp             EEEEES
T ss_pred             EEEecC
Confidence            665543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.32  E-value=0.23  Score=61.64  Aligned_cols=233  Identities=13%  Similarity=0.121  Sum_probs=140.9

Q ss_pred             EEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-cceeeecccc
Q 001352          808 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH  886 (1093)
Q Consensus       808 ~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~-~~~~~~l~~h  886 (1093)
                      +.-.+|..+.+|.-.+.++.|+|+++...++.+.-. .+|.-=.|-.  .+.|+..+ +..|+-|++.. ..++..+..|
T Consensus        70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             hhccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence            445688888888888889999999988877776533 3555556653  34555555 45799999974 2444555545


Q ss_pred             ----cCCeEEEEEeCCCCEEEEEe-------CCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEc--c-CCCEE
Q 001352          887 ----SKRVTGLVFSDALNILVSSG-------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH--K-DQTRF  952 (1093)
Q Consensus       887 ----~~~V~~l~~s~dg~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~-dg~~l  952 (1093)
                          ...|..-..+++.++++..|       -.|.+.+|.++.+      .-+..+||..   ....+...  + ....+
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~------~sQ~iegha~---~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA---SFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc------cchhhhHhHh---hhheeccCCCCCCceEE
Confidence                45677788899999988654       3478889988864      3444555543   12122211  1 12232


Q ss_pred             EEEe----CCeEEEEEcCCc---ce------eeeeecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001352          953 LLVH----ETHLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1017 (1093)
Q Consensus       953 ~~~~----d~~i~vwd~~~~---~~------~~~~~~~--h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~ 1017 (1093)
                      +.+.    .++++|.++...   ..      +...+++  -..-..++..|+.-..+...+.-|.|.++|+.||.++.+-
T Consensus       217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence            2232    267888888543   11      1111111  1333346777777777888889999999999999887544


Q ss_pred             ccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCC
Q 001352         1018 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1064 (1093)
Q Consensus      1018 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1064 (1093)
                      +.        ++..|...  +.++..+ -++.....|.|.--.+.+.
T Consensus       297 ri--------s~~~iF~~--~~~~~~~-g~~~vnr~G~vl~v~v~~~  332 (1630)
T 1xi4_A          297 RI--------SGETIFVT--APHEATA-GIIGVNRKGQVLSVCVEEE  332 (1630)
T ss_pred             cc--------cCCceEEe--ccCCCCC-ceEEEcCCceEEEEEEccc
Confidence            41        12233322  2232223 3444457777766666543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.31  E-value=0.15  Score=54.08  Aligned_cols=235  Identities=11%  Similarity=0.033  Sum_probs=122.0

Q ss_pred             ccCCCEEEEEe-C----CeEEEEEccCceeEEE--ECCCCCCeEEEEEcCCCCCEEEEEeC----C-----CeEEEEEcC
Q 001352          812 SKNDAYLFSAS-G----GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMD----D-----STILIYNAR  875 (1093)
Q Consensus       812 s~dg~~la~~~-d----g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~----d-----g~i~iwd~~  875 (1093)
                      .-++.+++.|+ +    ..+.+||..+.+-...  +....... +++..  ++++++.|+.    +     ..+.+||+.
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~   98 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM   98 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence            34566666665 1    4589999887653222  11111112 22222  5677777775    2     368899988


Q ss_pred             Ccce--eeecccccCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccC
Q 001352          876 SSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  948 (1093)
Q Consensus       876 ~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d  948 (1093)
                      +.+-  +..+......-..+.+  ++++++.|+.+     ..+.+||..+.+-.....  .+...      ....+..-+
T Consensus        99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r------~~~~~~~~~  168 (308)
T 1zgk_A           99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP--MLTRR------IGVGVAVLN  168 (308)
T ss_dssp             TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCC--CSSCC------BSCEEEEET
T ss_pred             CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCC--CCccc------cceEEEEEC
Confidence            7642  2222221222222222  67777777644     358889998765333211  11111      111222226


Q ss_pred             CCEEEEE-eC-----CeEEEEEcCCcceeeeeecCC-CCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceEEE
Q 001352          949 QTRFLLV-HE-----THLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCR 1016 (1093)
Q Consensus       949 g~~l~~~-~d-----~~i~vwd~~~~~~~~~~~~~h-~~~v~~~~fs~dg~~l~t~~~d-----g~v~vwd~~~~~~~~~ 1016 (1093)
                      +++++.| .+     ..+.+||..+.+-...-.... ...-..+.  -++++++.|+.+     ..+.+||+.+.+....
T Consensus       169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~  246 (308)
T 1zgk_A          169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV  246 (308)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence            6666663 22     468999998765432211111 11112222  277788888765     4689999988754421


Q ss_pred             eccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCC-----cEEEEecCCCCCCcccCCCc
Q 001352         1017 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPPD 1074 (1093)
Q Consensus      1017 ~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~~~ 1074 (1093)
                          ...+..     ....+++..  ++.+++.|+.++     .+.+||+.  ..+|...++.
T Consensus       247 ----~~~p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~  296 (308)
T 1zgk_A          247 ----APMKHR-----RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPD--TDTWSEVTRM  296 (308)
T ss_dssp             ----CCCSSC-----CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT--TTEEEEEEEC
T ss_pred             ----CCCCCC-----ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCC--CCEEeecCCC
Confidence                122222     111222222  367888888653     56777774  4568766443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.31  E-value=0.043  Score=53.03  Aligned_cols=189  Identities=8%  Similarity=-0.026  Sum_probs=98.3

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCcce-----eeecccc--cCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeee--e
Q 001352          856 DNNVIAIGMDDSTILIYNARSSEV-----ISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR--S  926 (1093)
Q Consensus       856 d~~~lasg~~dg~i~iwd~~~~~~-----~~~l~~h--~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~--~  926 (1093)
                      ...+|++...| +++.=...++..     ..+-.++  =..+..++|+|+|.+.+.  .+|.+.-.+..+.......  .
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            34567777777 666544444331     0111122  236789999999987776  6665444443331111100  0


Q ss_pred             eecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceee-----eee-cCCCCCEEEEEEccCCCEEEEEeCC
Q 001352          927 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-----QWF-PISSVPISQATFSCDCRMVFTSFVD 1000 (1093)
Q Consensus       927 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~-----~~~-~~h~~~v~~~~fs~dg~~l~t~~~d 1000 (1093)
                      ...-..-..   ...++.|.|+|.+.++ .||.|+-++..+.....     ... ..-=..+..|.|.|+|.+.++.  |
T Consensus        80 t~IG~~Gw~---~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--d  153 (236)
T 1tl2_A           80 KKIGNGGWN---QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--G  153 (236)
T ss_dssp             EEEECSCGG---GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--T
T ss_pred             cEecccccc---cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--C
Confidence            000000000   1478999999999988 77988877764322111     001 1112467899999999877765  7


Q ss_pred             CcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352         1001 GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus      1001 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
                      +.+.-+..+++.....+.....+..  ...+++.+ +.|.| ++.++++.  +|  ++|..
T Consensus       154 g~lyr~~~P~~~~~~wl~~~~~~g~--~g~~~yr~-l~f~~-~G~l~~v~--~g--~~Y~~  206 (236)
T 1tl2_A          154 QQFYKALPPVSNQDNWLARATKIGQ--GGWDTFKF-LFFSS-VGTLFGVQ--GG--KFYED  206 (236)
T ss_dssp             TEEEEECCCSSTTCCHHHHCEEEES--SSGGGEEE-EEECT-TSCEEEEE--TT--EEEEE
T ss_pred             CcEEecCCCCCCCcccccccceecc--CCcceEEE-EEECC-CCcEEEEe--CC--eEEec
Confidence            7754333333322211111111111  13345554 44888 45655555  66  44444

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.15  E-value=0.31  Score=52.84  Aligned_cols=241  Identities=12%  Similarity=0.045  Sum_probs=117.6

Q ss_pred             CCCEEEEEe--CCeEEEEEccC----ceeEEEEC-CCCCCeEEEEEcCCCCCEEEEEeC-C---------CeEEEEEcCC
Q 001352          814 NDAYLFSAS--GGVISLYIVMT----FKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD-D---------STILIYNARS  876 (1093)
Q Consensus       814 dg~~la~~~--dg~i~iwd~~~----~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~-d---------g~i~iwd~~~  876 (1093)
                      ++++++.|+  ...+.+||..+    ++.+..+. .......++.+   ++++++.|+. +         ..+.+||+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            777777775  36799999863    23332222 11112222333   5677777775 2         4688999987


Q ss_pred             cce--eeecc-cccCCeEEEEEeCCCCEEEEEeCC---------------------------------------CcEEEE
Q 001352          877 SEV--ISKLE-GHSKRVTGLVFSDALNILVSSGGD---------------------------------------AQIFVW  914 (1093)
Q Consensus       877 ~~~--~~~l~-~h~~~V~~l~~s~dg~~l~s~s~d---------------------------------------g~i~iw  914 (1093)
                      .+-  +..+. .....-.++.  .++++++.|+.+                                       ..+.+|
T Consensus        96 ~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y  173 (357)
T 2uvk_A           96 NSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF  173 (357)
T ss_dssp             TEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred             CcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence            642  22222 1111122222  577888888865                                       468899


Q ss_pred             eCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-e------CCeEEEEEc--CCcceeeeeecCC-CCCEEE
Q 001352          915 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H------ETHLAIYEA--EELTCLKQWFPIS-SVPISQ  984 (1093)
Q Consensus       915 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~------d~~i~vwd~--~~~~~~~~~~~~h-~~~v~~  984 (1093)
                      |..+.+-.....+  +...     .....+..-++++++.| .      ...+.+||+  .+.+-...-.... ......
T Consensus       174 d~~~~~W~~~~~~--p~~~-----~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          174 DPSTQQWSYAGES--PWYG-----TAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             ETTTTEEEEEEEC--SSCC-----CBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             eCCCCcEEECCCC--CCCC-----cccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            9988653332111  1110     11012222356666653 2      235777876  4443222111111 111122


Q ss_pred             EEEccCCCEEEEEeCC----------------------CcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCC
Q 001352          985 ATFSCDCRMVFTSFVD----------------------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL 1042 (1093)
Q Consensus       985 ~~fs~dg~~l~t~~~d----------------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~ 1042 (1093)
                      .+...++++++.|+.+                      ..+.+||+.+.+....    ..++..    .....++..   
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~----r~~~~~~~~---  315 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS----GELSQG----RAYGVSLPW---  315 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE----EECSSC----CBSSEEEEE---
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC----CCCCCC----cccceeEEe---
Confidence            2334477788877742                      2578899987755432    122322    111122333   


Q ss_pred             CCCEEEEEeCCCc----EEEEecCCCCCCcccCCCcccc
Q 001352         1043 KPTQFAVGLTNGE----VYVIEPNEPGDTWAVLPPDEIV 1077 (1093)
Q Consensus      1043 d~~~l~~~~~dg~----v~~w~~~~~~~~~~~~~~~~~~ 1077 (1093)
                      ++..++.|+.++.    =-+|-+.-...+|....|.+.+
T Consensus       316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~  354 (357)
T 2uvk_A          316 NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHHH  354 (357)
T ss_dssp             TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-----
T ss_pred             CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccccc
Confidence            3688899997642    2455455567789888887754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.03  E-value=0.1  Score=50.40  Aligned_cols=150  Identities=9%  Similarity=0.022  Sum_probs=86.4

Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCccee------eec--ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeC
Q 001352          845 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI------SKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV  916 (1093)
Q Consensus       845 ~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~------~~l--~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~  916 (1093)
                      ..++.++|+| ++.+.++  .+|.++-.+..++...      ..+  .+-.. -.++.|.|+|.+.++  .||.|.-++-
T Consensus        41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            3677999999 8887776  6787777666542211      111  01112 478999999998888  5688877765


Q ss_pred             CCCceeeee--eeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcce------eeeeecCCCCCEEEEEEc
Q 001352          917 DGWGIQTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC------LKQWFPISSVPISQATFS  988 (1093)
Q Consensus       917 ~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~------~~~~~~~h~~~v~~~~fs  988 (1093)
                      .+.......  ....-.+.-   ..+..+.|.|+|.+-++. ++.++-+...++..      ...+-...-..-..+.|+
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~  190 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS  190 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred             CcCCCCceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence            332211100  000111111   147899999999999999 88865444332221      111111223344556788


Q ss_pred             cCCCEEEEEeCCCcEEEEEc
Q 001352          989 CDCRMVFTSFVDGTLSIHEA 1008 (1093)
Q Consensus       989 ~dg~~l~t~~~dg~v~vwd~ 1008 (1093)
                      ++|.+.++.  +|  ++|..
T Consensus       191 ~~G~l~~v~--~g--~~Y~~  206 (236)
T 1tl2_A          191 SVGTLFGVQ--GG--KFYED  206 (236)
T ss_dssp             TTSCEEEEE--TT--EEEEE
T ss_pred             CCCcEEEEe--CC--eEEec
Confidence            998777655  66  44443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.03  E-value=0.7  Score=48.99  Aligned_cols=227  Identities=10%  Similarity=0.001  Sum_probs=109.8

Q ss_pred             EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC----CC-------cEEEEECCCCceeEE--eecCC
Q 001352          420 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DK-------TIKVWDAVTGSRTYS--FEGHG  486 (1093)
Q Consensus       420 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~----d~-------~i~vwd~~~~~~~~~--~~~h~  486 (1093)
                      .+..||..+++-..  ..+.....+....+...++.  +++.|+.    ++       .+.+||..+++-...  +....
T Consensus        25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r  100 (318)
T 2woz_A           25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR  100 (318)
T ss_dssp             EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred             ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence            37889988765322  12221112222233344555  6666762    12       177888877754321  11111


Q ss_pred             CCeEEeeecccCCccEEEEEecC-------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC--Ccee
Q 001352          487 APVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESF  557 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~--~~~~  557 (1093)
                      ..-..+.+    ++.+++.|+.+       ..+.+||..+.+-...-..+.......+...+++.++.++....  ....
T Consensus       101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  176 (318)
T 2woz_A          101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR  176 (318)
T ss_dssp             CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred             cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence            11111111    44566667654       24777777654432221222221111222256777777664221  1345


Q ss_pred             EEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352          558 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  632 (1093)
Q Consensus       558 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  632 (1093)
                      +.+||+.+.+-...-.... ......++.+  ++..++.|+.+     ..+.+||+.+.+....-.....  .....+..
T Consensus       177 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~  251 (318)
T 2woz_A          177 VFIYNPKKGDWKDLAPMKT-PRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVS  251 (318)
T ss_dssp             EEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEE
T ss_pred             EEEEcCCCCEEEECCCCCC-CcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEE
Confidence            8999998876543321111 0111222222  45666666643     3577899988765543222211  11222233


Q ss_pred             cCCCEEEEEECC--------------CeEEEEEcCCCceee
Q 001352          633 KNGTLLAVIANE--------------NRIKILETPESNSVD  659 (1093)
Q Consensus       633 ~~~~~l~~~~~d--------------g~i~iw~~~~~~~~~  659 (1093)
                      -++++++.|+.+              ..+.+||..+.+...
T Consensus       252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  292 (318)
T 2woz_A          252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG  292 (318)
T ss_dssp             ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred             ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence            456777776643              357778887764443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.94  E-value=0.23  Score=52.61  Aligned_cols=238  Identities=6%  Similarity=-0.052  Sum_probs=116.6

Q ss_pred             CCCCCEEEEEEcC----CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC----C-----CcEEEEE
Q 001352          406 SPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----D-----KTIKVWD  472 (1093)
Q Consensus       406 s~dg~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~----d-----~~i~vwd  472 (1093)
                      .-++..++.|+.+    ..+.+||..+++-.. ...+......- +++. -+++  +++.|+.    +     ..+.+||
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~~~~~d   96 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGCV-VGGL--LYAVGGRNNSPDGNTDSSALDCYN   96 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEEE-ETTE--EEEECCEEEETTEEEECCCEEEEE
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEEE-ECCE--EEEECCCcCCCCCCeecceEEEEC
Confidence            3456777777632    358899988754211 11111111111 1222 2444  5666665    2     4688899


Q ss_pred             CCCCceeEE--eecCCCCeEEeeecccCCccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001352          473 AVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL  545 (1093)
Q Consensus       473 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  545 (1093)
                      ..+.+-...  +......-..+.+    ++.+++.|+.+     ..+.+||..+..-...-..+.......+..-+++.+
T Consensus        97 ~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy  172 (308)
T 1zgk_A           97 PMTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLY  172 (308)
T ss_dssp             TTTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred             CCCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEE
Confidence            887754321  1111111111222    44566666543     357788876643222111111111111122266777


Q ss_pred             EEEecCCCC-ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEec
Q 001352          546 FSCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDA  619 (1093)
Q Consensus       546 ~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~  619 (1093)
                      +.++.++.. ...+.+||+.+.+-...-.... .......+.+  ++..++.|+.+     ..+.+||+.+.+....-..
T Consensus       173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~  249 (308)
T 1zgk_A          173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM  249 (308)
T ss_dssp             EECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred             EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence            776654322 3458899988776543321111 1112222333  55666667654     5689999988766543322


Q ss_pred             CCCCCCCceEEEecCCCEEEEEECC-----CeEEEEEcCCCce
Q 001352          620 GGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESNS  657 (1093)
Q Consensus       620 ~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~  657 (1093)
                      ...  .....+..-++++++.|+.+     ..+.+||..+.+.
T Consensus       250 p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          250 KHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             SSC--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CCC--ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence            211  11222222367777777643     4577888876643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.81  E-value=0.048  Score=57.70  Aligned_cols=198  Identities=9%  Similarity=0.040  Sum_probs=109.1

Q ss_pred             CEEEEEeCCCeEEEEEcCCcceeeecccc-cCCeEEEEE--eC-CCCEEEEE-eCCCcEEEEeCCCCceeeeeeeecCCC
Q 001352          858 NVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVF--SD-ALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDG  932 (1093)
Q Consensus       858 ~~lasg~~dg~i~iwd~~~~~~~~~l~~h-~~~V~~l~~--s~-dg~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~  932 (1093)
                      .++++++.||.|.-.|..+|+.+.+++.. ..++....-  .+ ++..++.. +.||.|..++..+|.......+..+..
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47888999999999999999999888754 122222110  01 23334333 579999999988774332111111100


Q ss_pred             cccCCCCceEEEE------------ccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCC------EEEEEEc-----c
Q 001352          933 VMTLAPSETHIQF------------HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP------ISQATFS-----C  989 (1093)
Q Consensus       933 ~~~~~~~v~~~~~------------s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~------v~~~~fs-----~  989 (1093)
                             ..-+..            +.+|..++.+.++++...|+.+|+.+..+..+....      ..+....     .
T Consensus        91 -------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~  163 (339)
T 2be1_A           91 -------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE  163 (339)
T ss_dssp             -------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred             -------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence                   001221            244544445789999999999999998765442111      0011110     1


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCCc
Q 001352          990 DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1068 (1093)
Q Consensus       990 dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~ 1068 (1093)
                      .+..|+.+..+..+.+.+ .+|+ +..+....+.+.... ..+. .....+. |+.+ ++++.||.|..+|.......|
T Consensus       164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~-~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD-VPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT-HHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             CCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccc-cccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence            235677777777777776 4564 444333333332200 0000 0000111 3444 557889999999988777778

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.66  E-value=0.62  Score=50.07  Aligned_cols=136  Identities=15%  Similarity=0.128  Sum_probs=86.4

Q ss_pred             CCeEEEEEcCCCCceEEecCC----CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe------------eeeee
Q 001352          509 DGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------------IKRTY  572 (1093)
Q Consensus       509 dg~i~vwd~~~~~~~~~~~~~----~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~------------~~~~~  572 (1093)
                      ++.||..++.....-..+..+    -..+..+..+|+|++|+..+     ...|.+..+..+.            ..+.+
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-----~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty  114 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-----DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY  114 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-----SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-----CCeEEEEEecCccccCcccccccccceeEE
Confidence            366776666644433333333    23678899999999999986     4457777766321            11122


Q ss_pred             ecccc---cCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCc--eEEEEe-------cCCCCCCCceEEEecCCCE
Q 001352          573 QGLQL---QHNSVSVVHFDTA---KDQILAAGDDHVIKIWDMNKVQ--LLTTID-------AGGGLPENPRICFNKNGTL  637 (1093)
Q Consensus       573 ~~~~~---~~~~v~~v~~~~~---~~~l~~~~~dg~i~iwd~~~~~--~~~~~~-------~~~~~~~v~~v~~s~~~~~  637 (1093)
                      .-...   ...+|..+.|+|-   +..|++-..|+.|++||+....  +. .+.       .......+.+++|.+++-.
T Consensus       115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT  193 (452)
T 3pbp_A          115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLT  193 (452)
T ss_dssp             EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred             EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcE
Confidence            22110   1367999999996   4689999999999999998622  22 222       1222245778899988777


Q ss_pred             EEEEE--CCCeEEEE
Q 001352          638 LAVIA--NENRIKIL  650 (1093)
Q Consensus       638 l~~~~--~dg~i~iw  650 (1093)
                      |.+.+  ..|.|+-.
T Consensus       194 LYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          194 LYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEEECTTSCEEEEE
T ss_pred             EEEEecCCCCCEEEE
Confidence            77755  66666543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.63  E-value=0.38  Score=59.83  Aligned_cols=238  Identities=11%  Similarity=0.086  Sum_probs=135.6

Q ss_pred             eeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCE
Q 001352          341 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  420 (1093)
Q Consensus       341 ~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~  420 (1093)
                      .-.+|..+ ++|.-. ..++.|+|+++...+..+.                    ...+|..=.|-.+.. |+-.+ +..
T Consensus        71 AIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~--------------------~~e~VvfWkWis~~~-l~lVT-~~a  126 (1630)
T 1xi4_A           71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLNT-VALVT-DNA  126 (1630)
T ss_pred             hccCCCcc-eEEEec-CCeEEEeehHHhhhhcccc--------------------cCCCceEEEecCCCe-eEEEc-CCe
Confidence            33466666 566543 5789999999887776433                    235688888875544 44433 345


Q ss_pred             EEEEEccCCCcccceEEeccc----cccEEEEEeeCCCCcEEEEEEc------CCCcEEEEECCCCceeEEeecCCCCeE
Q 001352          421 VQLYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVY  490 (1093)
Q Consensus       421 i~iwd~~~~~~~~~~~~~~~h----~~~v~~~~~s~d~~~l~l~s~~------~d~~i~vwd~~~~~~~~~~~~h~~~v~  490 (1093)
                      |.-|++.+......  .+..|    ...|..-.-+++.++ .+++|=      -.|.+.+|..+.+. .+.+.||.+...
T Consensus       127 VyHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW-~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~  202 (1630)
T 1xi4_A          127 VYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFA  202 (1630)
T ss_pred             EEEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCe-EEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhh
Confidence            99999975432221  23333    345777778888886 333332      35788999865543 345666765554


Q ss_pred             EeeecccCCccEEEE-Eec---CCeEEEEEcCCC---CceE-----EecC----CCCceEEEEEccCCCEEEEEecCCCC
Q 001352          491 SLCPHAKENIHFIFS-ISV---DGKIKAWLYDSL---GARV-----DYDA----PGLGCTRMAYSANGRRLFSCGTSKEG  554 (1093)
Q Consensus       491 ~~~~~~~~~~~~l~s-~~~---dg~i~vwd~~~~---~~~~-----~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~~  554 (1093)
                      .+.....+....+++ +..   .+.+++-++...   ....     .+..    ...-..++..++.-..+...+.    
T Consensus       203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----  278 (1630)
T 1xi4_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----  278 (1630)
T ss_pred             eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----
Confidence            444332222222322 222   268888888553   1111     0111    1122346666776666666654    


Q ss_pred             ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001352          555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL  613 (1093)
Q Consensus       555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~  613 (1093)
                      .|.+.++|+.||.++..-+-..   .+|...+......-+++....|.|.--.+.....
T Consensus       279 ~G~~~~~d~~t~~~i~~~ris~---~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i  334 (1630)
T 1xi4_A          279 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (1630)
T ss_pred             CceEEEEecccchhhhhccccC---CceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence            7789999999998876544333   4555444444444555555666655555544433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.46  E-value=1.2  Score=47.19  Aligned_cols=226  Identities=13%  Similarity=0.107  Sum_probs=115.5

Q ss_pred             CeEEEEEccCceeEE-EECCCCCCeEEEEEcCCCCCEEEEEeC----CC-------eEEEEEcCCccee--eecccccCC
Q 001352          824 GVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD----DS-------TILIYNARSSEVI--SKLEGHSKR  889 (1093)
Q Consensus       824 g~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~----dg-------~i~iwd~~~~~~~--~~l~~h~~~  889 (1093)
                      ..+..||..+.+-.. .+..........+... ++.+++.|+.    ++       .+.+||..+.+-.  ..+......
T Consensus        24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  102 (318)
T 2woz_A           24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL  102 (318)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred             cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence            457889988765433 2222222223333344 6788888873    12       2778888776432  222221111


Q ss_pred             eEEEEEeCCCCEEEEEeCC-------CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-e-----
Q 001352          890 VTGLVFSDALNILVSSGGD-------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-----  956 (1093)
Q Consensus       890 V~~l~~s~dg~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~-----  956 (1093)
                      -..+.+  ++++++.|+.+       ..+.+||..+.+-....  ..+....      ...+...++++.+.| .     
T Consensus       103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r~------~~~~~~~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A          103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK--NLPIKVY------GHNVISHNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC--CCSSCEE------SCEEEEETTEEEEECCEESSSC
T ss_pred             cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC--CCCCccc------ccEEEEECCEEEEEcCCCCCCC
Confidence            222222  67788888764       24788888876533211  1111111      122233567766663 2     


Q ss_pred             -CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceEEEeccccccCCCCCCC
Q 001352          957 -ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCL 1030 (1093)
Q Consensus       957 -d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1093)
                       -..+.+||..+.+-...-.......-.++ ..-++++++.|+.+     ..+.+||+.+.+....    ...|..    
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~----  243 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGV-AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM----TEFPQE----  243 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC----CCCSSC----
T ss_pred             ccceEEEEcCCCCEEEECCCCCCCcccceE-EEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC----CCCCCc----
Confidence             13599999988764332111111111112 22377888888754     3477889888754421    122222    


Q ss_pred             ccceeEEEeCCCCCCEEEEEeCCC--------------cEEEEecCCCCCCcccCCCc
Q 001352         1031 HVYPHAIAAHPLKPTQFAVGLTNG--------------EVYVIEPNEPGDTWAVLPPD 1074 (1093)
Q Consensus      1031 ~v~~~~~~~~p~d~~~l~~~~~dg--------------~v~~w~~~~~~~~~~~~~~~ 1074 (1093)
                       ....+++..  ++.+++.|+.++              .+.++|+  ...+|....|.
T Consensus       244 -r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~  296 (318)
T 2woz_A          244 -RSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED--DKKEWAGMLKE  296 (318)
T ss_dssp             -CBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEET--TTTEEEEEESC
T ss_pred             -ccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeC--CCCEehhhccc
Confidence             111122222  357888887653              4666776  44568776443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.90  E-value=4.3  Score=42.27  Aligned_cols=183  Identities=10%  Similarity=0.050  Sum_probs=100.4

Q ss_pred             eeeecCCCceEEEEEccC-------------CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          340 SMDFHPVQHTLLLVGTNV-------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       340 ~~~~spdg~~llasg~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      +--++++|+++..+...+             ..|+..++.+++...                    +..  ..  +.+|+
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~--~~--~~~~s  112 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP--DP--CIYAS  112 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC--SC--EEEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec--CC--ccEEE
Confidence            445689999877766544             356666766664332                    111  11  23678


Q ss_pred             CCCCEEEEEE--cC--CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe
Q 001352          407 PDGSLLGVAY--SK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  482 (1093)
Q Consensus       407 ~dg~~las~~--~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~  482 (1093)
                      +++++|+...  .+  ..|..-++.+.. .+   .+..+..    .+|+++++. +..+......|.+-++..+.....+
T Consensus       113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~  183 (302)
T 3s25_A          113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY  183 (302)
T ss_dssp             EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred             EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence            8999999876  23  345555555432 22   2333432    467888885 3334444678888887766544333


Q ss_pred             ecCCCCeEEeeecccCCccEEEEEecC--CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352          483 EGHGAPVYSLCPHAKENIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  560 (1093)
Q Consensus       483 ~~h~~~v~~~~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i  560 (1093)
                      .+   ... ..+.|  ++.+|+-....  ..|..-+++..... .+..  ..+  ..++|++++|+.+....  ...|..
T Consensus       184 ~~---~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt~--~~~--~~~~~~g~~Iy~~~~~~--~~~i~~  250 (302)
T 3s25_A          184 DC---NCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNPV-VLTE--ANI--EHYNVYGSLIFYQRGGD--NPALCV  250 (302)
T ss_dssp             CS---CEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCCE-ECSC--SCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred             CC---Ccc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCeE-EEeC--CCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence            32   222 22333  44566555433  24555555544332 2221  222  34888999998764322  356777


Q ss_pred             EeCCCCee
Q 001352          561 WNESEGAI  568 (1093)
Q Consensus       561 wd~~~~~~  568 (1093)
                      -++.....
T Consensus       251 ~~~DG~~r  258 (302)
T 3s25_A          251 VKNDGTGF  258 (302)
T ss_dssp             EETTSCCC
T ss_pred             EECCCCcc
Confidence            77654433

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.80  E-value=0.88  Score=49.16  Aligned_cols=149  Identities=9%  Similarity=0.000  Sum_probs=68.3

Q ss_pred             CeEEEEEcCCCCceEEecCCC-Cce-EEEEEccCCCEEEEEecCCCC--ceeEEEEeC--CCCeeeeeeecccccCCCeE
Q 001352          510 GKIKAWLYDSLGARVDYDAPG-LGC-TRMAYSANGRRLFSCGTSKEG--ESFLVEWNE--SEGAIKRTYQGLQLQHNSVS  583 (1093)
Q Consensus       510 g~i~vwd~~~~~~~~~~~~~~-~~v-~~~~~s~d~~~l~~~~~~~~~--~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~  583 (1093)
                      ..+.+||..+..=...-..+. ... .+++. -+++.++.++.+..+  ...+..||+  .+.+-...-.... ......
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~-~~~~~~  245 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSS-PDGVAG  245 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSST-TTCCBS
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCC-Cccccc
Confidence            468888887654332222221 111 22332 356666666543221  234677776  4443322211111 011111


Q ss_pred             EEEEcCCCCEEEEEeCC----------------------CcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEE
Q 001352          584 VVHFDTAKDQILAAGDD----------------------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI  641 (1093)
Q Consensus       584 ~v~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  641 (1093)
                      ..+...++..++.|+.+                      ..+.+||+.+.+....-.....  .....+...++++++.|
T Consensus       246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~G  323 (357)
T 2uvk_A          246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG--RAYGVSLPWNNSLLIIG  323 (357)
T ss_dssp             CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC--CBSSEEEEETTEEEEEE
T ss_pred             ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC--cccceeEEeCCEEEEEe
Confidence            11122245566666532                      2578999988766544333222  22233444578888888


Q ss_pred             ECCC------eEEEEEcCCCceeeecc
Q 001352          642 ANEN------RIKILETPESNSVDAAG  662 (1093)
Q Consensus       642 ~~dg------~i~iw~~~~~~~~~~~~  662 (1093)
                      +.++      .+.++++++++.+....
T Consensus       324 G~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          324 GETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             EECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             eeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            8642      45666887776655443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.75  E-value=1.3  Score=49.41  Aligned_cols=161  Identities=12%  Similarity=0.109  Sum_probs=89.8

Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce--eeeccc------ccCCeEEEEEeCC---CCEE-EEEeC-----
Q 001352          845 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEG------HSKRVTGLVFSDA---LNIL-VSSGG-----  907 (1093)
Q Consensus       845 ~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~--~~~l~~------h~~~V~~l~~s~d---g~~l-~s~s~-----  907 (1093)
                      .....++|.| +++++++-...+.|++++..+++.  +..+..      ..+....|+|+||   +..| ++-+.     
T Consensus        27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            4567999999 888777654445798888665543  222321      2355779999995   4444 44432     


Q ss_pred             -------CCcEEEEeCCCC--ceee-eeeee-cCCCcccCCCCceEEEEccCCCEEEEEeC-------------------
Q 001352          908 -------DAQIFVWDVDGW--GIQT-CRSLQ-TPDGVMTLAPSETHIQFHKDQTRFLLVHE-------------------  957 (1093)
Q Consensus       908 -------dg~i~iwd~~~~--~~~~-~~~~~-~~~~~~~~~~~v~~~~~s~dg~~l~~~~d-------------------  957 (1093)
                             ...|.-+++..+  .... ..++. .+....   .....++|.|||.+.++..|                   
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~---H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p  182 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD---HQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTP  182 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS---CCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC---CCCCeEeECCCCeEEEEECCCCCCCcccccccccccccc
Confidence                   234555655432  1111 11222 222111   24689999999998877322                   


Q ss_pred             --------------CeEEEEEcCCcc-----------eeeeeecCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcCCC
Q 001352          958 --------------THLAIYEAEELT-----------CLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1011 (1093)
Q Consensus       958 --------------~~i~vwd~~~~~-----------~~~~~~~~h~~~v~~~~fs~dg~~l~t~-~~dg~v~vwd~~~~ 1011 (1093)
                                    +.|.-++.. |.           ....+..+| .....++|.|+|++.++- +.++.-.|.-+..|
T Consensus       183 ~~~~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G  260 (454)
T 1cru_A          183 TQQELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKG  260 (454)
T ss_dssp             CHHHHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred             ccccccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecCC
Confidence                          223333332 33           223344455 457789999998866644 33444455555444

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.67  E-value=5  Score=44.66  Aligned_cols=195  Identities=11%  Similarity=0.093  Sum_probs=114.5

Q ss_pred             cCCCEEEEEe--CCeEEEEEccCceeEEEECC-CCCCeEEEEEc--CCCCCEEEEEeCC-------CeE---------EE
Q 001352          813 KNDAYLFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFN--PHDNNVIAIGMDD-------STI---------LI  871 (1093)
Q Consensus       813 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s--~~d~~~lasg~~d-------g~i---------~i  871 (1093)
                      .||+||..-.  +.+|...++..-++-+.+.- ....+..+.|-  | +..|++++++.       |..         .+
T Consensus       140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~  218 (638)
T 3sbq_A          140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM  218 (638)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred             eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence            3789999887  47788889888877666553 34577888886  6 66777776542       221         11


Q ss_pred             ---EEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCc---------------EEEEeCCC-------Cceee---
Q 001352          872 ---YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ---------------IFVWDVDG-------WGIQT---  923 (1093)
Q Consensus       872 ---wd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~---------------i~iwd~~~-------~~~~~---  923 (1093)
                         .|..+.+...++.- .+..-.+...++|++.++.+.+..               +.++++..       |+...   
T Consensus       219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g  297 (638)
T 3sbq_A          219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD  297 (638)
T ss_dssp             EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence               12222222222111 122333555778888877765421               55555321       11100   


Q ss_pred             --eeeeecCC----Ccc-----cCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcce-------------eeeeecC
Q 001352          924 --CRSLQTPD----GVM-----TLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC-------------LKQWFPI  977 (1093)
Q Consensus       924 --~~~~~~~~----~~~-----~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~-------------~~~~~~~  977 (1093)
                        ..++....    +..     ..+.....+.++|||++++++  -+.++.|+|.+....             .....  
T Consensus       298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--  375 (638)
T 3sbq_A          298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--  375 (638)
T ss_dssp             CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred             CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence              01111111    000     111345679999999999995  567899999874211             11111  


Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001352          978 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus       978 h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
                      -.-.....+|.++|....|-.-|..|.-|++...
T Consensus       376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence            2456788999999955556668999999999764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.62  E-value=2.9  Score=46.60  Aligned_cols=110  Identities=14%  Similarity=0.137  Sum_probs=63.7

Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcc--cCCCCceEEEEccC---CCEEEEE--e----
Q 001352          888 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM--TLAPSETHIQFHKD---QTRFLLV--H----  956 (1093)
Q Consensus       888 ~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~d---g~~l~~~--~----  956 (1093)
                      ...+.|+|.|||+++++-...+.|++++..++....  .........  ........++|+||   +..|.++  .    
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            356799999999988875444568888765544322  111111110  01235779999996   5555552  2    


Q ss_pred             --------CCeEEEEEcCCc-------ceeee-eecCCCCCEEEEEEccCCCEEEEEeC
Q 001352          957 --------ETHLAIYEAEEL-------TCLKQ-WFPISSVPISQATFSCDCRMVFTSFV  999 (1093)
Q Consensus       957 --------d~~i~vwd~~~~-------~~~~~-~~~~h~~~v~~~~fs~dg~~l~t~~~  999 (1093)
                              ...|.-|+...+       +.+.. +..........++|.|||.+.++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                    234655655322       11111 11122345789999999998887654

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=94.55  E-value=0.028  Score=44.55  Aligned_cols=54  Identities=19%  Similarity=0.382  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhc
Q 001352            5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLS   58 (1093)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~G~w~~~~~~l~   58 (1093)
                      ++|+-+-|++||..+||.+++.+|.+|.|++.+  ...=..-.|.-+|.-++.+-+
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQK   65 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK   65 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHH
Confidence            678999999999999999999999999998764  222345667777776665533

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.40  E-value=0.15  Score=53.94  Aligned_cols=195  Identities=10%  Similarity=0.035  Sum_probs=104.3

Q ss_pred             EEEEEcCCCcEEEEECCCCceeEEeecC-CCCeEEeeecc-cCCccEEEEE-ecCCeEEEEEcCCCCceEEecCC----C
Q 001352          458 SVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHA-KENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAP----G  530 (1093)
Q Consensus       458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~-~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~----~  530 (1093)
                      +++.++.||.|.-.|..+|+.+.+++.. ..++....-.. ..++..++.. +.||.|..++..++.....+...    .
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~   91 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST   91 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence            5788899999999999999999988654 12332221111 1133334443 68999999998776544433221    1


Q ss_pred             CceEE---EEE-----ccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccC----CCeEEEEEc-----CCCCE
Q 001352          531 LGCTR---MAY-----SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH----NSVSVVHFD-----TAKDQ  593 (1093)
Q Consensus       531 ~~v~~---~~~-----s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~----~~v~~v~~~-----~~~~~  593 (1093)
                      .++..   ..+     +..+..+++++.    ++.++..|..+|+.+..+.......    ....|....     ..+..
T Consensus        92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~  167 (339)
T 2be1_A           92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM  167 (339)
T ss_dssp             CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred             cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence            11111   000     013456666665    7789999999999998886432100    000111110     12356


Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEecCCCC-CCCc-----eEEEecCCCEEEEEECCCeEEEEEcCCCceee
Q 001352          594 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENP-----RICFNKNGTLLAVIANENRIKILETPESNSVD  659 (1093)
Q Consensus       594 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~-----~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  659 (1093)
                      ++.+..+..+.+.+ ++|+ ...+...... ..+.     .-..+.|+.+ ++++.||.|.-+|..++..+.
T Consensus       168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            77777666666666 3343 2111100000 0000     0011234555 557888999999988876654

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.89  E-value=13  Score=40.54  Aligned_cols=259  Identities=11%  Similarity=0.065  Sum_probs=122.3

Q ss_pred             CCCeeEEEEcc--CCCEEEEEeCC----eEEEEEccCceeEEEEC------C--------CCCCeEEEEEcCCC-CCEEE
Q 001352          803 QEAVPCFALSK--NDAYLFSASGG----VISLYIVMTFKTILTIM------P--------PSPTATSLAFNPHD-NNVIA  861 (1093)
Q Consensus       803 ~~~v~~l~~s~--dg~~la~~~dg----~i~iwd~~~~~~~~~~~------~--------~~~~i~~l~~s~~d-~~~la  861 (1093)
                      ...|.+|++.|  ++.+++.+..|    .|... ...++.-..+.      .        ....|.++++.|.+ ...|.
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            45688999998  66666666554    33332 22222222211      1        11247789998733 44555


Q ss_pred             EEeCCCeEEEEEcCCcc---eeeeccc----------------ccCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCce
Q 001352          862 IGMDDSTILIYNARSSE---VISKLEG----------------HSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGI  921 (1093)
Q Consensus       862 sg~~dg~i~iwd~~~~~---~~~~l~~----------------h~~~V~~l~~s~d-g~~l~s~s~dg~i~iwd~~~~~~  921 (1093)
                      ++...+.|...+ +.|+   .+..+..                ....|.+|.+.|. ...|..+..++.|...+-.. + 
T Consensus       133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG-~-  209 (394)
T 3b7f_A          133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAG-T-  209 (394)
T ss_dssp             EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTT-S-
T ss_pred             EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCC-C-
Confidence            566566555443 2222   2211110                1235788999873 34444444444444332222 1 


Q ss_pred             eeeeeeec-CCC-c-----ccCCCCceEEEEccC-CCEEEEEeCCeEEEEEcCCcceeeeeecCC-C---CCEEEEEEcc
Q 001352          922 QTCRSLQT-PDG-V-----MTLAPSETHIQFHKD-QTRFLLVHETHLAIYEAEELTCLKQWFPIS-S---VPISQATFSC  989 (1093)
Q Consensus       922 ~~~~~~~~-~~~-~-----~~~~~~v~~~~~s~d-g~~l~~~~d~~i~vwd~~~~~~~~~~~~~h-~---~~v~~~~fs~  989 (1093)
                       ....+.. ... .     ......+.++++.|+ ...|.++..+.|...+- .|+....+...- .   ..+..+.+.|
T Consensus       210 -tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p  287 (394)
T 3b7f_A          210 -DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ  287 (394)
T ss_dssp             -SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred             -CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence             1111111 000 0     000124788999986 35666666666655442 233332222111 1   3466788876


Q ss_pred             -CCCEEEEEeC-----------CCcEEEEEcCC-CceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcE
Q 001352          990 -DCRMVFTSFV-----------DGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1056 (1093)
Q Consensus       990 -dg~~l~t~~~-----------dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v 1056 (1093)
                       +...|.+++.           ++...+|.... |+.-..+.  .-++....-..+....++++|.++..|.+++.++.|
T Consensus       288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l  365 (394)
T 3b7f_A          288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI  365 (394)
T ss_dssp             SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred             CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence             3333444432           33345565544 34333332  112221000112223467787555667777766664


Q ss_pred             EEEecCCCCCCcccC
Q 001352         1057 YVIEPNEPGDTWAVL 1071 (1093)
Q Consensus      1057 ~~w~~~~~~~~~~~~ 1071 (1093)
                        |.-.+.+..|...
T Consensus       366 --~~S~D~G~tW~~~  378 (394)
T 3b7f_A          366 --WASADEGEHWQCI  378 (394)
T ss_dssp             --EEESSTTSBCEEE
T ss_pred             --EEECCCCCCceEc
Confidence              4555667778754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.63  E-value=15  Score=40.77  Aligned_cols=56  Identities=21%  Similarity=0.169  Sum_probs=36.2

Q ss_pred             CCeEEEEECCCCC-EEEEEEcCCEEEEEEccCCCcccceEEec---------cccccEEEEEeeCC
Q 001352          398 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAP  453 (1093)
Q Consensus       398 ~~V~~v~~s~dg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~s~d  453 (1093)
                      .....|+|.|||+ +|+++...|.|++++.........+..+.         +.......|+|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            4567899999996 56666788999999754321111111211         11456789999997

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.34  E-value=6.2  Score=46.89  Aligned_cols=196  Identities=10%  Similarity=0.105  Sum_probs=106.3

Q ss_pred             cCCCEEEEEeC-----CeEEEEEccCceeEEEE-C-------CCCCCeEEEEEcCCCCCEEEEEeCCC------eEEEEE
Q 001352          813 KNDAYLFSASG-----GVISLYIVMTFKTILTI-M-------PPSPTATSLAFNPHDNNVIAIGMDDS------TILIYN  873 (1093)
Q Consensus       813 ~dg~~la~~~d-----g~i~iwd~~~~~~~~~~-~-------~~~~~i~~l~~s~~d~~~lasg~~dg------~i~iwd  873 (1093)
                      .++..++.|+.     +.+.+||..+++-...- .       .....-.++.+.. ++++++.|+.++      .+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence            56677777652     45889998776433222 1       1112334455543 566777777543      588899


Q ss_pred             cCCcc--eeeecccccCCeEEEEEeCCCCEEEEEeCCC--cEEEEeCCCCceeeeeeee-cCCCcccCCCCceEEEEccC
Q 001352          874 ARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQ-TPDGVMTLAPSETHIQFHKD  948 (1093)
Q Consensus       874 ~~~~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~d  948 (1093)
                      ..+.+  .+..+......- +++...++++++.||.++  .+.+||..+..-....... .+....    ...++.+..+
T Consensus       475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~----~~~a~v~~~~  549 (695)
T 2zwa_A          475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL----VSAGLEFDPV  549 (695)
T ss_dssp             TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCC----BSCEEEEETT
T ss_pred             CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccc----ceeEEEEeCC
Confidence            88753  222222211111 223324788999988765  6899999886532211100 111111    2334566666


Q ss_pred             -CCEEEEE-e--C-----CeEEEEEcCCcce-----eeeeec--CCCCCEEEEEEccCCCEEEEEeCC--------CcEE
Q 001352          949 -QTRFLLV-H--E-----THLAIYEAEELTC-----LKQWFP--ISSVPISQATFSCDCRMVFTSFVD--------GTLS 1004 (1093)
Q Consensus       949 -g~~l~~~-~--d-----~~i~vwd~~~~~~-----~~~~~~--~h~~~v~~~~fs~dg~~l~t~~~d--------g~v~ 1004 (1093)
                       +++++.| .  +     +.+.+||+.+...     ...+..  .....-.+++...++++++.||.+        ..|.
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence             5555554 2  2     3589999988761     111111  111111122333447888888743        4589


Q ss_pred             EEEcCCCceE
Q 001352         1005 IHEASNLEVQ 1014 (1093)
Q Consensus      1005 vwd~~~~~~~ 1014 (1093)
                      +||+.+....
T Consensus       630 ~yd~~t~~W~  639 (695)
T 2zwa_A          630 SLDPLSETLT  639 (695)
T ss_dssp             EEETTTTEEE
T ss_pred             EEECCCCeEE
Confidence            9999988665

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.31  E-value=12  Score=38.86  Aligned_cols=217  Identities=9%  Similarity=0.106  Sum_probs=118.1

Q ss_pred             ecCCCceEEEEEcc-CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC---
Q 001352          343 FHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---  418 (1093)
Q Consensus       343 ~spdg~~llasg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d---  418 (1093)
                      |+++|.++..+... ++.|...+.+......                    +..  .  .+--++++|.+|+.+...   
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~--------------------l~~--~--~~~~i~~~g~~Iyy~~~~~~~   76 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHK--------------------LSN--D--TAMYINADKNYVYYVRNNNQK   76 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETTSCSCEE--------------------EEE--E--EEEEEEECSSEEEEEEECC--
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCCCCCCEE--------------------ccC--C--ceeeEEEcCCEEEEEECCCCc
Confidence            45677766665443 4556666654443322                    111  1  123457889998887543   


Q ss_pred             -----------CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEE--cCCCcEEEEECCCCceeEEeecC
Q 001352          419 -----------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDKTIKVWDAVTGSRTYSFEGH  485 (1093)
Q Consensus       419 -----------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~--~~d~~i~vwd~~~~~~~~~~~~h  485 (1093)
                                 ..|+..++.+++..    .+...  .  ...|+++++.+++...  .....|..-++.. .....+..+
T Consensus        77 ~~~~~~~~~n~~~Iy~i~~dg~~~~----~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~  147 (302)
T 3s25_A           77 ITSQTFFSYDRNSLCRIKRNGHGST----VLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNH  147 (302)
T ss_dssp             ----CCSSCCSEEEEEEETTSCCCE----EEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESS
T ss_pred             ccccceeccCCCeEEEEeCCCCcce----EeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCC
Confidence                       35777777776422    12221  1  2367888885433331  2344566667653 334445444


Q ss_pred             CCCeEEeeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352          486 GAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  564 (1093)
Q Consensus       486 ~~~v~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~  564 (1093)
                      ..    ..+.+  +++.|+-.+. ...|.+-++...........   .. ...+.|++.+|+......  ...|..-++.
T Consensus       148 ~~----~~~~~--~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~-~~~~~P~g~~iy~t~~~~--~~~I~~~~ld  215 (302)
T 3s25_A          148 YL----FTCNT--SDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NC-YKPVVLDDTNVYYMDVNR--DNAIVHVNIN  215 (302)
T ss_dssp             CC----CCSEE--ETTEEEEECTTTCCEEEEETTTTEEEEEECS---CE-EEEEEEETTEEEEEEGGG--TTEEEEECSS
T ss_pred             Cc----eEeeE--ECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Cc-cceeeecCCEEEEEEcCC--CcEEEEEECC
Confidence            32    23433  4455654444 56777777766554444332   22 234669999998765422  2457777777


Q ss_pred             CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCc
Q 001352          565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQ  612 (1093)
Q Consensus       565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~--~dg~i~iwd~~~~~  612 (1093)
                      .+.. ..+..     ..+  ..|+|++.+|+.+.  ..+.|..-++....
T Consensus       216 G~~~-~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~  257 (302)
T 3s25_A          216 NPNP-VVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG  257 (302)
T ss_dssp             SCCC-EECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCCe-EEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence            6553 33322     223  34788888887653  23566666665433

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=91.38  E-value=14  Score=37.82  Aligned_cols=222  Identities=13%  Similarity=0.102  Sum_probs=111.7

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  416 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~  416 (1093)
                      .|..++....-  .++. . ||.|..|-.....++..                   .......|..++...+-. ++. .
T Consensus        25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-------------------p~~~~~~i~~ia~G~~hs-~~l-~   79 (282)
T 3qhy_B           25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-------------------PAATQSGVDAIAAGNYHS-LAL-K   79 (282)
T ss_dssp             SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-------------------CGGGGSCCCEEEECSSEE-EEE-E
T ss_pred             CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-------------------CccCCCCEEEEEeCCCEE-EEE-E
Confidence            56666665543  3444 4 78999998765433321                   001123577777654332 233 4


Q ss_pred             cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecc
Q 001352          417 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  496 (1093)
Q Consensus       417 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~  496 (1093)
                       ||.|..|-......+...   ..-...|..++...+-.    +.-. ||.|..|-......+-.-......|..++.- 
T Consensus        80 -~G~v~~wG~n~~Gqlg~P---~~~~~~v~~ia~G~~hs----~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G-  149 (282)
T 3qhy_B           80 -DGEVIAWGGNEDGQTTVP---AEARSGVDAIAAGAWAS----YALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG-  149 (282)
T ss_dssp             -TTEEEEEECCTTSTTCCC---GGGSSSEEEEEEETTEE----EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC-
T ss_pred             -CCEEEEeeCCCCCCCCCC---cccCCCeEEEECcCCEE----EEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc-
Confidence             899999987654333211   11234688887765533    2334 8999999754322211111123446666532 


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc
Q 001352          497 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  576 (1093)
Q Consensus       497 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  576 (1093)
                        ....++ -. ||.|..|-.....+.-.-......|..++...+...++   .    ++.|+.|-......+..-..  
T Consensus       150 --~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~p~~--  216 (282)
T 3qhy_B          150 --VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTVPTE--  216 (282)
T ss_dssp             --SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCCCGG--
T ss_pred             --cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCCCcc--
Confidence              222333 34 79999997655433221111123455665543332222   2    45588886543222111101  


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001352          577 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  610 (1093)
Q Consensus       577 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~  610 (1093)
                       ....|..++.....  .++-. ||.|+.|-...
T Consensus       217 -~~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~  246 (282)
T 3qhy_B          217 -ALSGVSAIASGEWY--SLALK-NGKVIAWGSSR  246 (282)
T ss_dssp             -GGSSCCEEEECSSC--EEEEE-TTEEEEESTTC
T ss_pred             -cCCCceEEEcCCCE--EEEEE-CCEEEEecCCC
Confidence             11356666655433  23333 88999986554

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=90.79  E-value=31  Score=40.69  Aligned_cols=247  Identities=8%  Similarity=0.003  Sum_probs=124.8

Q ss_pred             ceeee-ecCCCceEEEEEccCC----cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCC-----CCeEEEEECC
Q 001352          338 PMSMD-FHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-----VSVNRVVWSP  407 (1093)
Q Consensus       338 V~~~~-~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~s~  407 (1093)
                      ...+. ++||+++++++-|..|    .|+++|+.+++.+.. .|. ..              ...     .....++|..
T Consensus       131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~--------------~k~~~~~~~~~~~~~W~d  194 (711)
T 4hvt_A          131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PI--------------TNSGKLLEGKFTYPTWIN  194 (711)
T ss_dssp             EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CB--------------CTTCCBCCEETCCEEEEE
T ss_pred             EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-cc--------------cccccccccccceeeEEC
Confidence            34455 8999998666655544    599999999976631 000 00              000     0112346663


Q ss_pred             CCCEEEEE----------EcCCEEEEEEccCCCcccceEEecccccc-EEEEEeeCCCCcE---EEEEEcCC---CcEEE
Q 001352          408 DGSLLGVA----------YSKHIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQI---SVITCGDD---KTIKV  470 (1093)
Q Consensus       408 dg~~las~----------~~d~~i~iwd~~~~~~~~~~~~~~~h~~~-v~~~~~s~d~~~l---~l~s~~~d---~~i~v  470 (1093)
                      ++..+++.          +....|+.|.+.+...-. ...+.+.... -..+..+++++..   .+++.+.+   ..+.+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  273 (711)
T 4hvt_A          195 KDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYI  273 (711)
T ss_dssp             TTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEE
T ss_pred             CCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEE
Confidence            33343331          112468888887653211 1134433333 2345567777641   35544322   34566


Q ss_pred             EECCC--CceeEEeecCCCCeEEeeecccCCccEEEEE----------ecCCeEEEEEcCCC-------CceEE-e-cCC
Q 001352          471 WDAVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGKIKAWLYDSL-------GARVD-Y-DAP  529 (1093)
Q Consensus       471 wd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~vwd~~~~-------~~~~~-~-~~~  529 (1093)
                      .|...  ++ +..+.......  +..  ..++.+++..          ...+.|...++...       ..... + ...
T Consensus       274 ~~~~~~~~~-~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (711)
T 4hvt_A          274 LDTKYKNLK-LQKINMPSDAT--LQG--SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA  348 (711)
T ss_dssp             EECSSSSCE-EEECCSCTTCE--EEE--EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT
T ss_pred             EcCCCCCCc-ceEeecCCcce--Eee--eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC
Confidence            66543  33 22332111111  111  1133344422          24677888888763       12222 2 233


Q ss_pred             CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-eeee-eecccccCCCeEEEEEcCCCCEEEE-Ee---CCCcE
Q 001352          530 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRT-YQGLQLQHNSVSVVHFDTAKDQILA-AG---DDHVI  603 (1093)
Q Consensus       530 ~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~-~~---~dg~i  603 (1093)
                      ...+..+.+..+ ..+++...  ++...+.++++.++. .... +....  .+.+......+++..++. .+   .-+.+
T Consensus       349 ~~~l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~  423 (711)
T 4hvt_A          349 NEVFNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTI  423 (711)
T ss_dssp             TEEEEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEE
T ss_pred             CCeEEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEE
Confidence            446778888765 34444433  346678999987775 2333 22221  135666666677655444 33   44678


Q ss_pred             EEEECCCCc
Q 001352          604 KIWDMNKVQ  612 (1093)
Q Consensus       604 ~iwd~~~~~  612 (1093)
                      +.+|+. ++
T Consensus       424 ~~~d~~-~~  431 (711)
T 4hvt_A          424 YLWVKT-HE  431 (711)
T ss_dssp             EEECTT-SC
T ss_pred             EEEeCC-Cc
Confidence            888876 44

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.43  E-value=10  Score=44.90  Aligned_cols=199  Identities=13%  Similarity=0.073  Sum_probs=101.7

Q ss_pred             CCCCcEEEEEEcCC----CcEEEEECCCCceeEEe-e-----cCCCC-eEEeeecccC-CccEEEEEecCC------eEE
Q 001352          452 APCKQISVITCGDD----KTIKVWDAVTGSRTYSF-E-----GHGAP-VYSLCPHAKE-NIHFIFSISVDG------KIK  513 (1093)
Q Consensus       452 ~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~-~-----~h~~~-v~~~~~~~~~-~~~~l~s~~~dg------~i~  513 (1093)
                      .++.  +++.||.+    ..+.+||..+++....- .     ..... -.+++.  .. ++.+++.|+.++      .+.
T Consensus       396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~--~~~~~~lyv~GG~~~~~~~~~dv~  471 (695)
T 2zwa_A          396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTT--ISRNNQLLLIGGRKAPHQGLSDNW  471 (695)
T ss_dssp             CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEE--ETTTTEEEEECCBSSTTCBCCCCE
T ss_pred             ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEE--EccCCEEEEEcCCCCCCCccccEE
Confidence            3445  56666643    45888898877644322 1     01111 111222  21 445677776543      467


Q ss_pred             EEEcCCCCceEEecCCCCc-eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeec--ccccCCCeEEEEEcCC
Q 001352          514 AWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTA  590 (1093)
Q Consensus       514 vwd~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~v~~~~~  590 (1093)
                      +||..+..-...-..+... -.+++...+++.++.|+.+...  .+.+||+.+......-..  .........++.+..+
T Consensus       472 ~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~  549 (695)
T 2zwa_A          472 IFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV  549 (695)
T ss_dssp             EEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred             EEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence            7777664322211111111 1233333488888888765543  699999988765433220  1101122233555555


Q ss_pred             -CCEEEEEeC--C-----CcEEEEECCCCc------eEEEEecCCCCCCC-ceEEEecCCCEEEEEEC--------CCeE
Q 001352          591 -KDQILAAGD--D-----HVIKIWDMNKVQ------LLTTIDAGGGLPEN-PRICFNKNGTLLAVIAN--------ENRI  647 (1093)
Q Consensus       591 -~~~l~~~~~--d-----g~i~iwd~~~~~------~~~~~~~~~~~~~v-~~v~~s~~~~~l~~~~~--------dg~i  647 (1093)
                       +..++.|+.  +     ..+.+||+.+.+      ........ ..+.. .+++...++++++.|+.        ...+
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p-~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v  628 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP-LFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSI  628 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG-GGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSE
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC-CCCcccceEEEeCCCEEEEECCccCCCCCCCCCeE
Confidence             555666664  2     458899998877      22222210 01111 23333344777777764        3458


Q ss_pred             EEEEcCCCce
Q 001352          648 KILETPESNS  657 (1093)
Q Consensus       648 ~iw~~~~~~~  657 (1093)
                      .+||..+...
T Consensus       629 ~~yd~~t~~W  638 (695)
T 2zwa_A          629 ISLDPLSETL  638 (695)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEECCCCeE
Confidence            8888877643

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=89.59  E-value=24  Score=37.63  Aligned_cols=170  Identities=12%  Similarity=0.112  Sum_probs=93.7

Q ss_pred             cEEEEECCCC--ceeEEeecC------CCCeEEeeec-ccC----CccEE-EEEecCCeEEEEEcCCCCceEEec----C
Q 001352          467 TIKVWDAVTG--SRTYSFEGH------GAPVYSLCPH-AKE----NIHFI-FSISVDGKIKAWLYDSLGARVDYD----A  528 (1093)
Q Consensus       467 ~i~vwd~~~~--~~~~~~~~h------~~~v~~~~~~-~~~----~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~----~  528 (1093)
                      .|.+||+.++  +.++++.-.      ...+..+.+. ..+    ++.++ ++-+..+.|.|+|+.+++......    .
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            4778899998  888776432      3456777776 211    12343 344456789999998876655431    1


Q ss_pred             C--------------CCceEEEEEccC----CCEEEEEecCCCCceeEEEEeCC-----CCeeeeee--ecccccCCCeE
Q 001352          529 P--------------GLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNES-----EGAIKRTY--QGLQLQHNSVS  583 (1093)
Q Consensus       529 ~--------------~~~v~~~~~s~d----~~~l~~~~~~~~~~~~i~iwd~~-----~~~~~~~~--~~~~~~~~~v~  583 (1093)
                      .              ...+..++++|+    ++.|+.....+     -.+|.+.     .......+  .|.......-.
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-----~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~  278 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-----IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAI  278 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-----SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-----CcEEEEEHHHhhCcchhhceEEeeecCCCCCcc
Confidence            0              136788999998    78887765432     1233222     11111111  12220012334


Q ss_pred             EEEEc-CCCCEEEEEeCCCcEEEEECCC-C---ceEEEEecCCCCCCCceEEEecCCCEEEEE
Q 001352          584 VVHFD-TAKDQILAAGDDHVIKIWDMNK-V---QLLTTIDAGGGLPENPRICFNKNGTLLAVI  641 (1093)
Q Consensus       584 ~v~~~-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  641 (1093)
                      .+++. .+|..+++--+.+.|..|+..+ .   +....+...........+.+.++|.+.+..
T Consensus       279 ~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          279 ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred             eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence            45675 5666666667888999999876 1   223333322233345566665555444433

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=89.38  E-value=18  Score=42.63  Aligned_cols=240  Identities=9%  Similarity=-0.004  Sum_probs=117.6

Q ss_pred             ECCCCCEEEEE-EcC----CEEEEEEccCCCcccceEEeccccc------cEEEEEeeCCCCcEEEEEE----------c
Q 001352          405 WSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEIDAHVG------NVNDLAFSAPCKQISVITC----------G  463 (1093)
Q Consensus       405 ~s~dg~~las~-~~d----~~i~iwd~~~~~~~~~~~~~~~h~~------~v~~~~~s~d~~~l~l~s~----------~  463 (1093)
                      ++||+++++.+ |..    ..++++|+.+++.+..... ..-..      ....++|..++.  ++++.          +
T Consensus       137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~~~~~~  213 (711)
T 4hvt_A          137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNEITSSL  213 (711)
T ss_dssp             CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTCBCTTS
T ss_pred             cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCE--EEEEeCCCCCCcCcCC
Confidence            88999998876 322    3699999999875532111 00000      113447774443  34432          1


Q ss_pred             CCCcEEEEECCCCc--eeEEeecCCCCeE-EeeecccCCcc---EEEEEecC---CeEEEEEcCCCCc-eEEecCCCCce
Q 001352          464 DDKTIKVWDAVTGS--RTYSFEGHGAPVY-SLCPHAKENIH---FIFSISVD---GKIKAWLYDSLGA-RVDYDAPGLGC  533 (1093)
Q Consensus       464 ~d~~i~vwd~~~~~--~~~~~~~h~~~v~-~~~~~~~~~~~---~l~s~~~d---g~i~vwd~~~~~~-~~~~~~~~~~v  533 (1093)
                      ....|+.|.+.+..  -...+.+....+. ......++...   .+++.+.+   ..+.+.+...... ...+..+... 
T Consensus       214 ~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  292 (711)
T 4hvt_A          214 YPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA-  292 (711)
T ss_dssp             SBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC-
T ss_pred             CCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc-
Confidence            22468888876653  2233444333332 22222232221   34444422   3355555543222 2333333321 


Q ss_pred             EEEEEccCCCEEEEEecCC------CCceeEEEEeCCCCe-------eeee-eecccccCCCeEEEEEcCCCCEEEEEeC
Q 001352          534 TRMAYSANGRRLFSCGTSK------EGESFLVEWNESEGA-------IKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGD  599 (1093)
Q Consensus       534 ~~~~~s~d~~~l~~~~~~~------~~~~~i~iwd~~~~~-------~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~  599 (1093)
                       .+..+.++.+++....+.      -..+.|...++.++.       ..+. +....  ...+..+.+..+ ..+++...
T Consensus       293 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~-~l~~~~~~  368 (711)
T 4hvt_A          293 -TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA--NEVFNFISTTKD-RVFLATYD  368 (711)
T ss_dssp             -EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT--TEEEEEEEECSS-CEEEEEEE
T ss_pred             -eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC--CCeEEEEEEECC-EEEEEEEE
Confidence             223445665555432110      025568888887642       1222 22222  346778888865 56666666


Q ss_pred             CCc--EEEEECCCCc-eEEE-EecCCCCCCCceEEEecCCCEE-EEEEC---CCeEEEEEcC
Q 001352          600 DHV--IKIWDMNKVQ-LLTT-IDAGGGLPENPRICFNKNGTLL-AVIAN---ENRIKILETP  653 (1093)
Q Consensus       600 dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~s~~~~~l-~~~~~---dg~i~iw~~~  653 (1093)
                      ++.  +.++++.+++ .... +..... ..+.....++++..+ ++.+.   -+.+..++..
T Consensus       369 ~~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          369 NVVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             TTEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             CCEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            664  6677776664 2233 333221 224444555665544 33333   3566666665

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=89.34  E-value=13  Score=39.75  Aligned_cols=172  Identities=13%  Similarity=0.168  Sum_probs=95.2

Q ss_pred             eEEEEEccCc--eeEEEECCC------CCCeEEEEEc---CC---CCCEEEEEe-CCCeEEEEEcCCcceeeecc-----
Q 001352          825 VISLYIVMTF--KTILTIMPP------SPTATSLAFN---PH---DNNVIAIGM-DDSTILIYNARSSEVISKLE-----  884 (1093)
Q Consensus       825 ~i~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---d~~~lasg~-~dg~i~iwd~~~~~~~~~l~-----  884 (1093)
                      +|.+||+.+.  +.++++.-+      ...+..+++.   |.   ++.++.... ..+.|.|+|+.+++.-+.+.     
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5677888888  887776432      2356777776   21   134555444 46789999999876543331     


Q ss_pred             ---------cc----cCCeEEEEEeCC----CCEEEEEeCCCcEEEEeCCCCceeee---eeeecCCCcccCCCCceEEE
Q 001352          885 ---------GH----SKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDGWGIQTC---RSLQTPDGVMTLAPSETHIQ  944 (1093)
Q Consensus       885 ---------~h----~~~V~~l~~s~d----g~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~  944 (1093)
                               |.    ...|..+++||+    ++.|.-....+ -++|.+.+.-+...   ..++.. |.......-..++
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~  281 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA  281 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence                     11    136888999998    77777666555 35565543211110   001110 0000001123456


Q ss_pred             Ec-cCCCEEEE-EeCCeEEEEEcCC-c---ceeeeeecC-CCCCEEEEEEccCCCEEEEEe
Q 001352          945 FH-KDQTRFLL-VHETHLAIYEAEE-L---TCLKQWFPI-SSVPISQATFSCDCRMVFTSF  998 (1093)
Q Consensus       945 ~s-~dg~~l~~-~~d~~i~vwd~~~-~---~~~~~~~~~-h~~~v~~~~fs~dg~~l~t~~  998 (1093)
                      +. .+|.+.++ ...+.|..|+..+ .   +....+... .-..+..+.+.++|.+.+++.
T Consensus       282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred             EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence            65 56776666 4778899999875 1   112222211 223466777767776655553

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=88.74  E-value=20  Score=36.77  Aligned_cols=223  Identities=13%  Similarity=0.081  Sum_probs=111.3

Q ss_pred             CeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce
Q 001352          399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  478 (1093)
Q Consensus       399 ~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~  478 (1093)
                      .|..++....  ..+.-. ||.|..|-......+...   ......|..++...+-.   ++. . ||.|..|-......
T Consensus        25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p---~~~~~~i~~ia~G~~hs---~~l-~-~G~v~~wG~n~~Gq   93 (282)
T 3qhy_B           25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMP---AATQSGVDAIAAGNYHS---LAL-K-DGEVIAWGGNEDGQ   93 (282)
T ss_dssp             SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCC---GGGGSCCCEEEECSSEE---EEE-E-TTEEEEEECCTTST
T ss_pred             CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCC---ccCCCCEEEEEeCCCEE---EEE-E-CCEEEEeeCCCCCC
Confidence            5777776543  222234 899999987654333211   11233677777654432   333 4 89999997543221


Q ss_pred             eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352          479 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  558 (1093)
Q Consensus       479 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i  558 (1093)
                      +-.-..-...|..++.-  .  ...+.-. +|.|..|-.....+.-........|..++...+...++  .     ++.|
T Consensus        94 lg~P~~~~~~v~~ia~G--~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l--~-----~G~v  161 (282)
T 3qhy_B           94 TTVPAEARSGVDAIAAG--A--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV--K-----NGGV  161 (282)
T ss_dssp             TCCCGGGSSSEEEEEEE--T--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--E-----TTEE
T ss_pred             CCCCcccCCCeEEEECc--C--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE--E-----CCEE
Confidence            11111112356666542  1  2344445 99999997655433221111223455555433322222  1     3447


Q ss_pred             EEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEE
Q 001352          559 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL  638 (1093)
Q Consensus       559 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  638 (1093)
                      +.|-......+..-...   ...|..++...+  +.++- .||.|+.|-....-.+.. +.. ....|..++...+.  .
T Consensus       162 ~~wG~n~~gqlg~p~~~---~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~-p~~-~~~~v~~i~~G~~h--~  231 (282)
T 3qhy_B          162 IAWGDNYFGQTTVPAEA---QSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTV-PTE-ALSGVSAIASGEWY--S  231 (282)
T ss_dssp             EEEECCTTSTTSCCGGG---GSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCC-CGG-GGSSCCEEEECSSC--E
T ss_pred             EEecCCCCCCCCCceec---CCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCC-Ccc-cCCCceEEEcCCCE--E
Confidence            77765432221111111   245777776554  23333 599999997654322211 100 11235666654433  3


Q ss_pred             EEEECCCeEEEEEcCCC
Q 001352          639 AVIANENRIKILETPES  655 (1093)
Q Consensus       639 ~~~~~dg~i~iw~~~~~  655 (1093)
                      ++.. ||.+..|-....
T Consensus       232 ~al~-~g~v~~wG~n~~  247 (282)
T 3qhy_B          232 LALK-NGKVIAWGSSRT  247 (282)
T ss_dssp             EEEE-TTEEEEESTTCC
T ss_pred             EEEE-CCEEEEecCCCC
Confidence            3333 899999976543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=86.53  E-value=44  Score=37.01  Aligned_cols=30  Identities=7%  Similarity=0.039  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 001352          580 NSVSVVHFDTAKD-QILAAGDDHVIKIWDMN  609 (1093)
Q Consensus       580 ~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~~  609 (1093)
                      .....++|.|++. .++++...|.|++++..
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            3567899999986 67777889999999754

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=85.11  E-value=1  Score=41.29  Aligned_cols=59  Identities=12%  Similarity=0.202  Sum_probs=45.9

Q ss_pred             hhhhHHHhhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccc
Q 001352           71 KIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHEL  129 (1093)
Q Consensus        71 ~~~~~i~~~~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~  129 (1093)
                      .++|.|+-+.||||+..|...+|..++++.-..+.....+..++|+.+....+..+++.
T Consensus        51 ~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~  109 (156)
T 2nxp_A           51 QLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNET  109 (156)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHH
Confidence            38999999999999999999999999998655554445677788887766655544443

>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1

Probab=84.78  E-value=0.78  Score=40.94  Aligned_cols=57  Identities=14%  Similarity=0.299  Sum_probs=44.1

Q ss_pred             hhhhHHHhhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCccccc
Q 001352           71 KIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHE  128 (1093)
Q Consensus        71 ~~~~~i~~~~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~  128 (1093)
                      .++|.|+-+.||||+..|..++|..++++.-..+... .+..++|+.+....+..+++
T Consensus        32 ~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~   88 (138)
T 2j4b_A           32 PLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENN   88 (138)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCH
Confidence            3899999999999999999999999999876666555 67777777766655554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1093
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.004
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.003
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.0 bits (193), Expect = 3e-16
 Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 8/139 (5%)

Query: 377 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 436
           K+WD+                  +N + + P+G+           +L+      +     
Sbjct: 209 KLWDVREGMCRQT---FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265

Query: 437 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 496
             +   G +  ++FS   + +  +   DD    VWDA+   R     GH   V  L    
Sbjct: 266 HDNIICG-ITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322

Query: 497 KENIHFIFSISVDGKIKAW 515
                 + + S D  +K W
Sbjct: 323 DGM--AVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.5 bits (184), Expect = 4e-15
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 11/150 (7%)

Query: 460 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK--AWLY 517
           ++   D + K+WD   G    +F GH + + ++C     N     + S D   +      
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRA 257

Query: 518 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 577
           D       +D    G T +++S +GR L +             W+  +        G   
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN----CNVWDALKADRAGVLAG--- 310

Query: 578 QHNSVSVVHFDTAKDQILAAGDDHVIKIWD 607
             N VS +        +     D  +KIW+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.8 bits (182), Expect = 7e-15
 Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 10/164 (6%)

Query: 755 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 814
           +  V  +   P   L +S         +L+  R G        T +  +  +       N
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMCRQ----TFTGHESDINAICFFPN 237

Query: 815 DAYLFSASGG---VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 871
                + S      +            +        TS++F+     ++  G DD    +
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNV 296

Query: 872 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 915
           ++A  ++    L GH  RV+ L  +D    + +   D+ + +W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.3 bits (147), Expect = 2e-10
 Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 8/155 (5%)

Query: 852  FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 911
                D  +   G  D++  +++ R         GH   +  + F    N   +   DA  
Sbjct: 191  SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250

Query: 912  FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-HLAIYEAEELTC 970
             ++D+         S       +T       + F K     L  ++  +  +++A +   
Sbjct: 251  RLFDLRADQELMTYSHDNIICGIT------SVSFSKSGRLLLAGYDDFNCNVWDALKADR 304

Query: 971  LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1005
                       +S    + D   V T   D  L I
Sbjct: 305  AGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.2 bits (139), Expect = 2e-09
 Identities = 40/293 (13%), Positives = 95/293 (32%), Gaps = 11/293 (3%)

Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
            +  + W  D  LL  A     + ++  +  +       I      V   A++     ++
Sbjct: 57  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSGNYVA 113

Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
                +  +I       G+   S E  G   Y        + + I + S D     W  +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYL-SCCRFLDDNQIVTSSGDTTCALWDIE 172

Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +      +         ++ + + R   S       ++    W+  EG  ++T+ G    
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSG----ACDASAKLWDVREGMCRQTFTG---H 225

Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 638
            + ++ + F    +      DD   +++D+   Q L T      +     + F+K+G LL
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285

Query: 639 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 691
               ++    + +  +++         + +  L V         G  +  + +
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 22/144 (15%), Positives = 38/144 (26%), Gaps = 23/144 (15%)

Query: 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 388
           QT     S   ++ F P  +           TG  D                        
Sbjct: 220 QTFTGHESDINAICFFPNGNAFA--------TGSDD----------ATCRLFDLRADQEL 261

Query: 389 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 448
            T    +    +  V +S  G LL   Y      ++         +   +  H   V+ L
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCL 318

Query: 449 AFSAPCKQISVITCGDDKTIKVWD 472
             +     +   T   D  +K+W+
Sbjct: 319 GVTDDGMAV--ATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.8 bits (138), Expect = 3e-09
 Identities = 26/217 (11%), Positives = 66/217 (30%), Gaps = 10/217 (4%)

Query: 433 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 492
           R +  +  H+  +  + +    + +  ++   D  + +WD+ T ++ ++     + V + 
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLL--VSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103

Query: 493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552
                 + +++    +D     +   +    V       G T               TS 
Sbjct: 104 AYA--PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161

Query: 553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 612
              +  +   E+                 V  +         ++   D   K+WD+ +  
Sbjct: 162 GDTTCALWDIETGQQTTTFTG----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217

Query: 613 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 649
              T            ICF  NG   A  +++   ++
Sbjct: 218 CRQTFTGHESDINA--ICFFPNGNAFATGSDDATCRL 252

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 8e-06
 Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 11/130 (8%)

Query: 826 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKL 883
             L+ V       T         ++ F P + N  A G DD+T  +    A    +    
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSH 266

Query: 884 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 943
           +     +T + FS +  +L++   D    VWD           L   D  +      + +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDNRV------SCL 318

Query: 944 QFHKDQTRFL 953
               D     
Sbjct: 319 GVTDDGMAVA 328

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.5 bits (184), Expect = 4e-15
 Identities = 43/311 (13%), Positives = 86/311 (27%), Gaps = 65/311 (20%)

Query: 438 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 497
           +  H   V  + F      +  ++  +D TIKVWD  TG    + +GH   V  +     
Sbjct: 13  LSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 498 ENIH----------------------------------------FIFSISVDGKIKAWLY 517
             +                                          I S S D  IK W  
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 518 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 577
            +      +         +  + +G  + SC   +     +  W  +    K   +  + 
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ----TVRVWVVATKECKAELREHRH 186

Query: 578 QHNSVS-----------------VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 620
               +S                           +L+   D  IK+WD++    L T+   
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 621 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 680
                   + F+  G  +   A++  +++ +      +         +  L  +  +   
Sbjct: 247 DNWVRG--VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304

Query: 681 GAGIANGSVSV 691
             G  + +V V
Sbjct: 305 VTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.8 bits (182), Expect = 7e-15
 Identities = 44/326 (13%), Positives = 94/326 (28%), Gaps = 55/326 (16%)

Query: 324 PKTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------- 371
           P+   +  + G  SP   + FHP   ++++  +      +WD  +G              
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63

Query: 372 ------------FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 419
                                +           +     +V+ V   P+G  +  A    
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 420 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 479
            ++++                H   V  +  +     I   +C +D+T++VW   T    
Sbjct: 124 TIKMWEVQ---TGYCVKTFTGHREWVRMVRPNQDGTLI--ASCSNDQTVRVWVVATKECK 178

Query: 480 YSFEGHGAPVYSLCPHAKENI------------------HFIFSISVDGKIKAWLYDSLG 521
                H   V  +    + +                    F+ S S D  IK W   +  
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238

Query: 522 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 581
             +           + + + G+ + SC      +  L  W+       +T        + 
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCA----DDKTLRVWDYKNKRCMKTLNA---HEHF 291

Query: 582 VSVVHFDTAKDQILAAGDDHVIKIWD 607
           V+ + F      ++    D  +K+W+
Sbjct: 292 VTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.2 bits (178), Expect = 2e-14
 Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 8/174 (4%)

Query: 743 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 802
            N  G  I + +++    +W     +          V   +          +++ T S  
Sbjct: 151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE- 209

Query: 803 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 861
                     K   +L S S    I ++ V T   ++T++        + F+      I 
Sbjct: 210 -----TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFIL 263

Query: 862 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 915
              DD T+ +++ ++   +  L  H   VT L F      +V+   D  + VW+
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.1 bits (136), Expect = 4e-09
 Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 28/167 (16%)

Query: 807 PCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNP----------- 854
                +++   + S S    + +++V T +    +         +++ P           
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

Query: 855 --------HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 906
                        +  G  D TI +++  +   +  L GH   V G++F      ++S  
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266

Query: 907 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 953
            D  + VWD      +  ++L   +  +      T + FHK     +
Sbjct: 267 DDKTLRVWDYKNK--RCMKTLNAHEHFV------TSLDFHKTAPYVV 305

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 3e-06
 Identities = 17/170 (10%), Positives = 54/170 (31%), Gaps = 9/170 (5%)

Query: 848  TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 907
            T + F+P   +V+    +D+TI +++  + +    L+GH+  V  + F  +  +      
Sbjct: 21   TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL------ 73

Query: 908  DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 967
                         +   +  +    +     + + +    +    +             +
Sbjct: 74   --LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 968  LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1017
                 + F      +     + D  ++ +   D T+ +   +  E +  +
Sbjct: 132  TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (109), Expect = 1e-05
 Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 20/187 (10%)

Query: 872  YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 931
            +  R  E  + L GH   VT ++F    +++VS+  DA I VWD +       R+L+   
Sbjct: 3    WIPRPPEKYA-LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHT 59

Query: 932  GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC 991
                   S   I F                     +     +        +S  +   + 
Sbjct: 60   D------SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113

Query: 992  RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1051
              + ++  D T+ + E                   T   H     +       T  A   
Sbjct: 114  DHIVSASRDKTIKMWEVQTGYCVK-----------TFTGHREWVRMVRPNQDGTLIASCS 162

Query: 1052 TNGEVYV 1058
             +  V V
Sbjct: 163  NDQTVRV 169

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.5 bits (176), Expect = 6e-14
 Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 27/193 (13%)

Query: 336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 395
               ++   P     +  G+      +WD  +G  +   + +                  
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD--------- 255

Query: 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV---------GNVN 446
              SV  VV++ DG  +        V+L+     ++       ++             V 
Sbjct: 256 ---SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312

Query: 447 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----F 502
            +A +   + I  ++   D+ +  WD  +G+     +GH   V S+      ++      
Sbjct: 313 SVATTQNDEYI--LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

Query: 503 IFSISVDGKIKAW 515
             + S D K + W
Sbjct: 371 FATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.1 bits (175), Expect = 8e-14
 Identities = 44/398 (11%), Positives = 116/398 (29%), Gaps = 54/398 (13%)

Query: 539 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH-NSVSVVHFDTAKDQILAA 597
             + + +      +  + +++ +N +            L H + V  V F     + LA 
Sbjct: 22  DLDSQSVPDALKKQTNDYYIL-YNPALPREIDVELHKSLDHTSVVCCVKFS-NDGEYLAT 79

Query: 598 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 657
           G +   +++ ++   L+  +       ++P                          E+ +
Sbjct: 80  GCNKTTQVYRVSDGSLVARLSDDSAANKDP--------------------------ENLN 113

Query: 658 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 717
             ++      +R +  +P     G  +A G+        +    +I +  +   +    L
Sbjct: 114 TSSSPSSDLYIRSVCFSP----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 169

Query: 718 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 777
              PS  + +              T               V +     +     S +   
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229

Query: 778 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-------------GG 824
           +V           +    + + +  +++V     +++   + S S               
Sbjct: 230 RVWD-SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288

Query: 825 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 884
                   +    +T +       S+A    ++  I  G  D  +L ++ +S   +  L+
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347

Query: 885 GHSKRVTGLVFSDAL------NILVSSGGDAQIFVWDV 916
           GH   V  +  ++        N+  +  GD +  +W  
Sbjct: 348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.7 bits (161), Expect = 4e-12
 Identities = 41/337 (12%), Positives = 104/337 (30%), Gaps = 26/337 (7%)

Query: 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 388
              ++ +S    + F       L  G N   T ++ V+    L  R              
Sbjct: 56  HKSLDHTSVVCCVKFSN-DGEYLATGCN-KTTQVYRVSD-GSLVARLSDDSAANKDPENL 112

Query: 389 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 448
            T+      + +  V +SPDG  L       +++++         +++ +       +  
Sbjct: 113 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE-----NRKIVMILQGHEQDIY 167

Query: 449 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 508
           +         +++   D+T+++WD  TG  + +                    +I + S+
Sbjct: 168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK--YIAAGSL 225

Query: 509 DGKIKAWLYDSLGARVDYDAPGL-------GCTRMAYSANGRRLFSCGTSKEGESFLVEW 561
           D  ++ W  ++       D+              + ++ +G+ + S    +  + + ++ 
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285

Query: 562 NESEGAIKRTYQGLQLQH-----NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
             ++   K    G          + V  V      + IL+   D  +  WD      L  
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 345

Query: 617 IDAGGG----LPENPRICFNKNGTLLAVIANENRIKI 649
           +         +             + A  + + + +I
Sbjct: 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 1e-07
 Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 17/171 (9%)

Query: 852  FNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-------GHSKRVTGLVFSDALNILVS 904
             +P D   IA G  D  + ++++ +  ++ +L+       GH   V  +VF+     +VS
Sbjct: 212  VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271

Query: 905  SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH----IQFHKDQTRFLLVHETH- 959
               D  + +W++     ++                       +   ++    L   +   
Sbjct: 272  GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331

Query: 960  LAIYEAEELTCLKQW----FPISSVPISQ-ATFSCDCRMVFTSFVDGTLSI 1005
            +  ++ +    L         + SV ++  ++   +  +  T   D    I
Sbjct: 332  VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 3e-06
 Identities = 44/345 (12%), Positives = 95/345 (27%), Gaps = 43/345 (12%)

Query: 338 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 397
           P  +D         L         L++            +  D+     L  T+      
Sbjct: 18  PFLLDLDSQSVPDALKKQTNDYYILYNPALP--------REIDVELHKSLDHTS------ 63

Query: 398 VSVNRVVWSPDGSLLGVAYSKHIV--------QLYAYHGGSDARQQLEI------DAHVG 443
             V  V +S DG  L    +K            +      S A +  E        +   
Sbjct: 64  -VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122

Query: 444 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 503
            +  + FS   K +   T  +D+ I++WD          +GH   +Y        +   +
Sbjct: 123 YIRSVCFSPDGKFL--ATGAEDRLIRIWDIENRKIVMILQGHEQDIY--SLDYFPSGDKL 178

Query: 504 FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 563
            S S D  ++ W   +    +         T      +G+ + +    +    +  E   
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 564 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 623
               +    +      +SV  V F      +++   D  +K+W++      +        
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 624 PENP----------RICFNKNGTLLAVIANENRIKILETPESNSV 658
                          +   +N   +   + +  +   +    N +
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 4e-04
 Identities = 45/295 (15%), Positives = 100/295 (33%), Gaps = 21/295 (7%)

Query: 783  LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP 842
            LY P    +  V      +    V C   S +  YL +       +Y V     +  +  
Sbjct: 42   LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSD 101

Query: 843  PSPTA------------------TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 884
             S                      S+ F+P D   +A G +D  I I++  + +++  L+
Sbjct: 102  DSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQ 160

Query: 885  GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 944
            GH + +  L +  + + LVS  GD  + +WD+         S++     + ++P +    
Sbjct: 161  GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 220

Query: 945  FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 1004
                  R + V ++    +  E L    +        +    F+ D + V +  +D ++ 
Sbjct: 221  AAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 1005 IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF-AVGLTNGEVYV 1058
            +    N   +    +        + +      ++    +  ++   G  +  V  
Sbjct: 280  LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 31/221 (14%), Positives = 58/221 (26%), Gaps = 7/221 (3%)

Query: 842  PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS----KLEGHSKRVTGLVFSD 897
             P P    L  +            +   ++YN      I     K   H+  V  + FS+
Sbjct: 14   KPIPPF-LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN 72

Query: 898  ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 957
                L + G +    V+ V    +    S  +         + +         R +    
Sbjct: 73   DGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 131

Query: 958  THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1017
                +    E   ++ W   +   +               F  G   +  + +  V+   
Sbjct: 132  DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191

Query: 1018 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1058
            L T      T  +      +A  P      A G  +  V V
Sbjct: 192  LRTGQ-CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.7 bits (166), Expect = 1e-12
 Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 5/184 (2%)

Query: 848  TSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKRVTGLVFSDALNILVSS 905
            +  A+N  D   IAI  ++  + IY    +    + +L+ H+ +VTG+ ++   N +V+ 
Sbjct: 11   SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 906  GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 965
            G D   +VW + G   +    +   +          + +     +       +     + 
Sbjct: 70   GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS--RVISICYFEQE 127

Query: 966  EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1025
             +    K         +    +  +  ++     D    I  A   EV+ R   T +   
Sbjct: 128  NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187

Query: 1026 TTSC 1029
                
Sbjct: 188  MPFG 191

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.6 bits (158), Expect = 9e-12
 Identities = 38/257 (14%), Positives = 73/257 (28%), Gaps = 20/257 (7%)

Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
            ++   W+ D + + +  + H V +Y   G     Q  E+  H G V  + ++    +I 
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRI- 66

Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            +TCG D+   VW     +   +         + C     N       S    I    ++
Sbjct: 67  -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 519 SLGARVDYDAPGLGCTRMAYSANGR---------------RLFSCGTSKEGESFLVEWNE 563
                               S +                 R+FS    +  E        
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 564 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 623
           S+                V  V F     ++     D  + + D +K   + T+ +    
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244

Query: 624 PENPRICFNKNGTLLAV 640
                + F    +L+A 
Sbjct: 245 -PLLAVTFITESSLVAA 260

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 35/284 (12%), Positives = 75/284 (26%), Gaps = 25/284 (8%)

Query: 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW----DIGACSMLFKTAL 392
                           VG+      +         ++           + +      + L
Sbjct: 96  RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 155

Query: 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 452
           +          ++S     +     +                  E  +  G V+ + FSA
Sbjct: 156 LAAGSCDFKCRIFSAYIKEV----EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 211

Query: 453 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 512
              ++       D T+ + DA       +      P+ ++    + ++    +   D   
Sbjct: 212 NGSRV--AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSL---VAAGHDCFP 266

Query: 513 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 572
             + YDS   ++ +        + +      R       K+  S        EG+     
Sbjct: 267 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS--------EGSAAAGA 318

Query: 573 QGLQLQHNSVSVVHF----DTAKDQILAAGDDHVIKIWDMNKVQ 612
               L  NSVS +           Q    G D  + IWD+  ++
Sbjct: 319 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 11/114 (9%), Positives = 29/114 (25%), Gaps = 6/114 (5%)

Query: 808 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 867
                   + + +       L+   +    L+           +            +D  
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307

Query: 868 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVD 917
                +A +   +     H   V+ +          +   ++G D  + +WDV 
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 0.002
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 429 GSDARQQLEIDAHVGNVNDLAFSAPCKQIS--VITCGDDKTIKVWDAVTGSRT 479
           GS A        H  +V+ ++  +  K       T G D  + +WD  +    
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.1 bits (159), Expect = 6e-12
 Identities = 48/365 (13%), Positives = 111/365 (30%), Gaps = 32/365 (8%)

Query: 569 KRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 626
           + T +G    H +  ++ + F+   + ++   DD +I+++D    + L  +    G    
Sbjct: 5   RTTLRG----HMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58

Query: 627 PRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 685
             + +   G L++       R+  ++      V      +     +           G  
Sbjct: 59  --LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116

Query: 686 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 745
           + ++ V + PKE   P+         E + PL     E     +          R    +
Sbjct: 117 DNTLHVWKLPKESSVPDHG------EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170

Query: 746 GGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT------ 798
           G   +     N + +      +    LS              R        DTT      
Sbjct: 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230

Query: 799 -----DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 853
                    Q       L +       ++    S+                   +++   
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290

Query: 854 PHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 912
              +N++  G ++    IYN RS +++ + +   + ++  + F     ++ +   D Q F
Sbjct: 291 YVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSF 348

Query: 913 VWDVD 917
           +  +D
Sbjct: 349 LEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (138), Expect = 3e-09
 Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 441 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKEN 499
           H  N++ +        I  +  G +    +++  +G   ++        ++S+    K  
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335

Query: 500 IHFIFSISVDGKIKAWLYD 518
              + ++  DG+    + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 9/149 (6%)

Query: 848 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 907
           T L F   ++N +  G DD  I +Y++ + + + +L GH   V  L ++    ILVS   
Sbjct: 17  TCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGST 72

Query: 908 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 967
           D  + VWD+                          +++   +       +  L +++  +
Sbjct: 73  DRTVRVWDIKKGCCTHVFEGHNSTVRCL-----DIVEYKNIKYIVTGSRDNTLHVWKLPK 127

Query: 968 LTCLKQWFPISSVPISQATFSCDCRMVFT 996
            + +         P+   T   +   V  
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGV 156

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 8/151 (5%)

Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
           VIT  DDK I+V+D++         GH   V++L      +   + S S D  ++ W   
Sbjct: 26  VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA---HGGILVSGSTDRTVRVWDIK 82

Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
                  ++        +         +    S++    +  W   + +    +     +
Sbjct: 83  KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV--WKLPKESSVPDHGE---E 137

Query: 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 609
           H+   V H        +     H+  +  ++
Sbjct: 138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 42/323 (13%), Positives = 88/323 (27%), Gaps = 22/323 (6%)

Query: 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 388
             L        ++ +      L+   T+                             + +
Sbjct: 47  LQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 105

Query: 389 KTALVRDPGVSVNRV-VWS-PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN 446
           K       G   N + VW  P  S +     +H   L  +    +      +  H+ +V 
Sbjct: 106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165

Query: 447 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 506
                       V++   D T+ VWD       Y   GH   +Y              S 
Sbjct: 166 T----VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY--STIYDHERKRCISA 219

Query: 507 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 566
           S+D  I+ W           +   +   +   +  G    S        +          
Sbjct: 220 SMDTTIRIWDL--------ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN 271

Query: 567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 626
              R +       ++++  +     D IL +G ++   I+++   +L+            
Sbjct: 272 DYSRKFSYHHTNLSAITTFYVS---DNILVSGSENQFNIYNLRSGKLVHANILKDADQIW 328

Query: 627 PRICFNKNGTLLAVIANENRIKI 649
             + F    TL+A +  + +  +
Sbjct: 329 -SVNFK-GKTLVAAVEKDGQSFL 349

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 404 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 463
               + + +       ++++Y        +  L++  H G V  L ++       +++  
Sbjct: 18  CLQFEDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGGI---LVSGS 71

Query: 464 DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 515
            D+T++VWD   G  T+ FEGH + V  L     +NI +I + S D  +  W
Sbjct: 72  TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 2e-10
 Identities = 46/369 (12%), Positives = 116/369 (31%), Gaps = 42/369 (11%)

Query: 561 WNESEGAIKRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 618
           W   E    +  +G    H+   ++ + F    ++I++  DD+ +K+W     + L T+ 
Sbjct: 1   WRRGELKSPKVLKG----HDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLV 54

Query: 619 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 678
                             ++   + +  +K+        +      +  +R + ++    
Sbjct: 55  G----HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 110

Query: 679 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 738
           V+G+  A   V   E  +        V A    + +       +    +           
Sbjct: 111 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV----------- 159

Query: 739 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 798
            ++        +  L  +   +          +S    T +  R++    G         
Sbjct: 160 -KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSI--RVWDVETGNCIHTLTGH 216

Query: 799 DSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 857
            S          +   D  L S  +   + ++ + T + + T+  P+   +++     + 
Sbjct: 217 QS------LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270

Query: 858 NVIAIGMDDSTILIYNARSSEVISKL-----EGHSKRVTGLVFSDALNILVSSGGD---- 908
           N +    DD T+ +++ ++ E I  L      G    V  +  S+   +      +    
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330

Query: 909 AQIFVWDVD 917
            ++ V D D
Sbjct: 331 TKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 3e-09
 Identities = 55/309 (17%), Positives = 108/309 (34%), Gaps = 31/309 (10%)

Query: 349 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408
             ++ G++     +W   +G+   +R       G  S   +  ++          VW+ +
Sbjct: 28  NRIVSGSDDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 85

Query: 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS---------- 458
                     H   +   H           DA +   +          +           
Sbjct: 86  TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 145

Query: 459 ----VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKA 514
               V++   D  +KVWD  T +  ++ +GH   VYSL          + S S+D  I+ 
Sbjct: 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI----HVVSGSLDTSIRV 201

Query: 515 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 574
           W  ++      +   G              L S       +S +  W+   G   +T QG
Sbjct: 202 WDVET--GNCIHTLTGHQSLTSGMELKDNILVSG----NADSTVKIWDIKTGQCLQTLQG 255

Query: 575 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---VQLLTTIDAGGGLPENPRICF 631
                ++V+ + F+  K+ ++ + DD  +K+WD+     ++ L T+++GG      RI  
Sbjct: 256 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313

Query: 632 NKNGTLLAV 640
           +    + AV
Sbjct: 314 SNTKLVCAV 322

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 3e-09
 Identities = 33/245 (13%), Positives = 69/245 (28%), Gaps = 32/245 (13%)

Query: 430 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 489
            + +    +  H  +V        C    +++  DD T+KVW AVTG    +  GH   V
Sbjct: 4   GELKSPKVLKGHDDHVIT-CLQ-FCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60

Query: 490 YSLC-----PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 544
           +S         +      +   + +            + V                   R
Sbjct: 61  WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120

Query: 545 LFSCGTSKEGESF---------------LVEWNESEGAIK-----RTYQGLQLQHNSVSV 584
           ++   T +                     V     +  +K            LQ ++  V
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180

Query: 585 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 644
                    +++   D  I++WD+     + T+       ++          +L     +
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG----HQSLTSGMELKDNILVSGNAD 236

Query: 645 NRIKI 649
           + +KI
Sbjct: 237 STVKI 241

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 1e-06
 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 13/158 (8%)

Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
           V++   D +I+VWD  TG+  ++  GH +    +        + + S + D  +K W   
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD----NILVSGNADSTVKIWDIK 245

Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
           +         P    + +      +       S +G   L  W+   G   R    L+  
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKL--WDLKTGEFIRNLVTLESG 302

Query: 579 H--NSVSVVHFDTAKDQILAAGDDH----VIKIWDMNK 610
                V  +     K        +      + + D + 
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 6e-04
 Identities = 29/204 (14%), Positives = 60/204 (29%), Gaps = 27/204 (13%)

Query: 855  HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 914
               N I  G DD+T+ +++A + + +  L GH+  V      D  NI++S   D  + VW
Sbjct: 25   FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVW 82

Query: 915  DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQW 974
            + +           T          +  +   +D T  +   E              +  
Sbjct: 83   NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE------------TGQCL 130

Query: 975  FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1034
              +     +      D R V +   D  + + +                      L  + 
Sbjct: 131  HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT-------------LQGHT 177

Query: 1035 HAIAAHPLKPTQFAVGLTNGEVYV 1058
            + + +          G  +  + V
Sbjct: 178  NRVYSLQFDGIHVVSGSLDTSIRV 201

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 60.9 bits (146), Expect = 3e-10
 Identities = 36/361 (9%), Positives = 85/361 (23%), Gaps = 29/361 (8%)

Query: 587 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE- 644
                + ++     + + + D+    +  +          P       +     V+ N  
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNNHY 61

Query: 645 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG----IANGSVSVNEDPKEDVK 700
             I  ++     +   A + S             ++  G              D      
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 701 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 760
           P + V +       KP+   P   Q  L+ +                       +     
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRA---------------ADDGSLYVAGPDIY 166

Query: 761 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 820
                    T++             P     +         S                 +
Sbjct: 167 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 226

Query: 821 ASGGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 879
                     + T KT        +    +   +P D N I      + +  Y+ +  ++
Sbjct: 227 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY--GVLNRLAKYDLKQRKL 284

Query: 880 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 939
           I            + F    + L   G    + V++ D    +  ++++ P G M+    
Sbjct: 285 IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL--EKVKNIKLPGGDMSTTTP 341

Query: 940 E 940
           +
Sbjct: 342 Q 342

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.0 bits (128), Expect = 5e-08
 Identities = 35/319 (10%), Positives = 76/319 (23%), Gaps = 34/319 (10%)

Query: 325 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGAC 384
                 ++     P +    P   T  ++  + GD    D+++ +  F  N         
Sbjct: 29  TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE-- 86

Query: 385 SMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-----------R 433
                       G S+     SPDG  +    +        Y                  
Sbjct: 87  -----------VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 135

Query: 434 QQLEIDAHVGNVNDLAFSAPCKQI------SVITCGDDKTIKVWDAVTGSRTYSFEGHGA 487
           + +        V  +  +              +     K          +R         
Sbjct: 136 KPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 195

Query: 488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 547
             +       E              +      L           G T     A+   L+ 
Sbjct: 196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 255

Query: 548 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAGDDHVI 603
            G     +   +    +  A     Q   ++     ++   V FD   D++   G  + +
Sbjct: 256 TGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDL 315

Query: 604 KIWDMNKVQLLTTIDAGGG 622
            +++ + ++ +  I   GG
Sbjct: 316 AVFNPDTLEKVKNIKLPGG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 19/255 (7%), Positives = 62/255 (24%), Gaps = 19/255 (7%)

Query: 245 VSFVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYP-GVSLKNIPDYSP 303
           +   A+S         V   +  +   + +   + + +        P          Y  
Sbjct: 91  MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150

Query: 304 KSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLW 363
           +++    ++ +  +    D         +   +        P         +   +  + 
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210

Query: 364 DVNSGQKLFIRNF---------KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 414
              +  K   ++             D+       +     D        + SP      +
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE--FADLTELYFTGLRSPKDPNQ-I 267

Query: 415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 474
               + +  Y         + ++          +AF     +  +   G    + V++  
Sbjct: 268 YGVLNRLAKYDLKQR----KLIKAANLDHTYYCVAFDKKGDK--LYLGGTFNDLAVFNPD 321

Query: 475 TGSRTYSFEGHGAPV 489
           T  +  + +  G  +
Sbjct: 322 TLEKVKNIKLPGGDM 336

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 20/186 (10%), Positives = 43/186 (23%), Gaps = 14/186 (7%)

Query: 448 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 506
            A  A  + +  I       + V D  + +   S          +          ++   
Sbjct: 2   PALKAGHEYM--IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV-LN 58

Query: 507 SVDGKIKAW------LYDSLGARVDYDAPGLGCTRMAYSANGRRLF--SCGTSKEGESFL 558
           +  G I                       G      A S +G+ ++     T +  + ++
Sbjct: 59  NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118

Query: 559 VEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 616
           V+    E          +          V+   A D          I   D+   +    
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA 178

Query: 617 IDAGGG 622
           +     
Sbjct: 179 LPLRNW 184

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 45/304 (14%), Positives = 83/304 (27%), Gaps = 44/304 (14%)

Query: 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------------- 371
               E S     + +       ++ G       +WD N+ +                   
Sbjct: 9   HCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 372 --FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 429
              I       +    +     L          +    +  ++        + ++     
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 430 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 489
           +D   +  +  H   VN + F          +   D+TIKVW+  T     +  GH   +
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIV----SASGDRTIKVWNTSTCEFVRTLNGHKRGI 181

Query: 490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 549
             L          + S S D  I+ W  D           G          + +R+ S  
Sbjct: 182 ACLQYRD----RLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRFDNKRIVSG- 234

Query: 550 TSKEGESFLVEWNESEGAIKRTYQGLQLQH------NSVSVVHFDTAKDQILAAGDDHVI 603
                +  +  W+       R   G             V  + FD  + QI+++  D  I
Sbjct: 235 ---AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTI 289

Query: 604 KIWD 607
            IWD
Sbjct: 290 LIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 32/209 (15%), Positives = 61/209 (29%), Gaps = 20/209 (9%)

Query: 441 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 500
               V  L +        +++   D TIK+WD  T        GH   V  L    +  I
Sbjct: 14  TSKGVYCLQYDDQ----KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69

Query: 501 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 560
                 +V                  +A               +  S             
Sbjct: 70  TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV---------- 119

Query: 561 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 620
           W+ +            L  +  +V   D     I++A  D  IK+W+ +  + + T++  
Sbjct: 120 WDMAS--PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG- 176

Query: 621 GGLPENPRICFNKNGTLLAVIANENRIKI 649
               +    C      L+   +++N I++
Sbjct: 177 ---HKRGIACLQYRDRLVVSGSSDNTIRL 202

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 5e-06
 Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 15/119 (12%)

Query: 807 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 865
               L   D  + S S    I L+ +     +  +               DN  I  G  
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGAY 236

Query: 866 DSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 915
           D  I +++  ++           +  L  HS RV  L F +    +VSS  D  I +WD
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 27/211 (12%), Positives = 62/211 (29%), Gaps = 27/211 (12%)

Query: 848  TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 907
              L +   D+  I  G+ D+TI I++  + E    L GH+  V  L + + + I      
Sbjct: 19   YCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII------ 69

Query: 908  DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 967
                     D        +       +             +        +  +A+++   
Sbjct: 70   -----TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 968  LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1027
             T +     +     +      D + + ++  D T+ +   S  E               
Sbjct: 125  PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR------------ 172

Query: 1028 SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1058
              L+ +   IA    +      G ++  + +
Sbjct: 173  -TLNGHKRGIACLQYRDRLVVSGSSDNTIRL 202

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (138), Expect = 2e-09
 Identities = 32/322 (9%), Positives = 84/322 (26%), Gaps = 25/322 (7%)

Query: 336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 395
           +    + + P  + +                 G+  F+R     D G   +         
Sbjct: 18  NFTTHLSYDPTTNAIA-------------YPCGKSAFVR---CLDDGDSKVPPVVQFTGH 61

Query: 396 PGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYHGGSDARQQL-----EIDAHVGNVNDL 448
               V  V +SP      L        V ++ +    ++         E     G ++D+
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 449 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 508
           ++    +++ V+  G D         +G+      GH   + +        +  +     
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 509 DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 568
              +         +  D      G        +         +   +  +  ++   G  
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-GEFVITVGSDRKISCFDGKSGEF 240

Query: 569 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 628
            +  +  Q                +    G D  I++WD+   + +           N +
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300

Query: 629 ICFNKNGT-LLAVIANENRIKI 649
           +     G   +  ++ +  +  
Sbjct: 301 VGVVATGNGRIISLSLDGTLNF 322

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 459 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 515
             T G D TI+VWD  T    + ++ +        +   A  N   I S+S+DG +  +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 28/168 (16%), Positives = 50/168 (29%), Gaps = 10/168 (5%)

Query: 836 TILTIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGH-S 887
           ++  I+PP P       T L+++P  N +       + +   +   S+V  + +  GH S
Sbjct: 4   SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63

Query: 888 KRVTGLVFSDALN--ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 945
             VT + FS       L S     ++ VW            +        LA   + I +
Sbjct: 64  SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123

Query: 946 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 993
             +  R  +V E                   +S               
Sbjct: 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 5e-06
 Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 853 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL---VFSDALNILVSSGGDA 909
           +  D+   A    D+TI +++  +S+ + K     +++      V +     ++S   D 
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 910 QIFVWDV 916
            +  +++
Sbjct: 319 TLNFYEL 325

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 7e-09
 Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 9/117 (7%)

Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
            +  + + P G       +  +          +   + ++  H   V  L F+   K   
Sbjct: 226 QIFSLGYCPTGEW----LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF- 280

Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 515
            ++ G D  +  W    G+  +      + V S      +   +I + S D K   +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK--YIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 9e-09
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 849 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 908
           SL F             D+ +  +       I +    S  V     S     +V+  GD
Sbjct: 270 SLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGD 327

Query: 909 AQIFVWDV 916
            +  V++V
Sbjct: 328 KKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 31/275 (11%), Positives = 73/275 (26%), Gaps = 19/275 (6%)

Query: 377 KVWDIGACSMLFKTALVRDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 434
           KVWDI         + +        +      PDG  L V      + ++     +   +
Sbjct: 75  KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134

Query: 435 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 494
                +                 S  + G+     + +     +T   +  G    + C 
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCI 189

Query: 495 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 554
               +   +++  +D  +++W          +D        + Y   G  L     S   
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNV 248

Query: 555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 614
           E   V               L L  + V  + F       ++ G D+++  W       +
Sbjct: 249 EVLHVNKP--------DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300

Query: 615 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 649
                   +        + +   +   + + +  +
Sbjct: 301 FQSKESSSV---LSCDISVDDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 403 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 462
           + ++  G         +++  +    G      +       +V     S   K I  +T 
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYG----ASIFQSKESSSVLSCDISVDDKYI--VTG 324

Query: 463 GDDKTIKVWD 472
             DK   V++
Sbjct: 325 SGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 1e-05
 Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 14/111 (12%)

Query: 388 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 447
           F+ A+   P  S +    + DG +  V +    +      G     +Q+    H   V  
Sbjct: 3   FQGAMGSKPAYSFH---VTADGQMQPVPFPPDAL---IGPGIPRHARQINTLNHGEVVCA 56

Query: 448 LAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHGAPVYSLC 493
           +  S P + +     G    +KVWD                     + S  
Sbjct: 57  VTISNPTRHVY---TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 5/129 (3%)

Query: 865 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 924
            D+ I     R +  I+ L  H + V  +  S+    + + GG   + VWD+   G ++ 
Sbjct: 30  PDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSP 87

Query: 925 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQ 984
            S                 +   D    ++  E              +    ++S   + 
Sbjct: 88  VSQLDCLNRDNYI---RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144

Query: 985 ATFSCDCRM 993
              +     
Sbjct: 145 YALAISPDS 153

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 8/75 (10%)

Query: 533 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 592
              + ++  G+   S G        L  W    GA     +      +SV          
Sbjct: 268 VLSLKFAYCGKWFVSTGKDN----LLNAWRTPYGASIFQSKE----SSSVLSCDISVDDK 319

Query: 593 QILAAGDDHVIKIWD 607
            I+    D    +++
Sbjct: 320 YIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 3/68 (4%)

Query: 807 PCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 865
                +    +  S     +++ +      +I      S    S   +  D+  I  G  
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS-VLSCDISV-DDKYIVTGSG 326

Query: 866 DSTILIYN 873
           D    +Y 
Sbjct: 327 DKKATVYE 334

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (131), Expect = 1e-08
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 841 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDAL 899
           +   P          + +++A G  D+ I IY+ +   ++I  L  H   V  L++    
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP- 269

Query: 900 NILVSSGGDAQIFVWDV 916
           + LVSSG DA I  W+V
Sbjct: 270 STLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)

Query: 438 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 497
           I  H   +  L  +       +I+   D  I  W + +       + H   + SL     
Sbjct: 9   ISGHNKGITALTVN------PLISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57

Query: 498 ENIHFIFS 505
           +    I  
Sbjct: 58  QEYSSISW 65

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 4/57 (7%)

Query: 460 ITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 515
            T   D  I ++      +       H   V +L          + S   D  IK W
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP---STLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 438 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 474
           ++AH   VN+L +  P     +++ G D  IK W+ V
Sbjct: 254 LNAHKDGVNNLLWETPST---LVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 878 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 917
           EV+  + GH+K +T L  +     L+S   D +I  W   
Sbjct: 4   EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS 39

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 28/248 (11%), Positives = 61/248 (24%), Gaps = 34/248 (13%)

Query: 848  TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 907
            T+L  NP     +  G  D  I+ +++ S       + HS  +  L  S A      S  
Sbjct: 17   TALTVNP-----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEYSSISWD 66

Query: 908  DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLA------ 961
            D                +     +   T   +              ++    L       
Sbjct: 67   DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126

Query: 962  ------------------IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 1003
                              +++  +L              S  + S     +    V G +
Sbjct: 127  SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 186

Query: 1004 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063
             +++  + EV+    +    +                 ++    A G  +  +++     
Sbjct: 187  LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246

Query: 1064 PGDTWAVL 1071
            P      L
Sbjct: 247  PMKIIKAL 254

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.0 bits (128), Expect = 4e-08
 Identities = 37/329 (11%), Positives = 82/329 (24%), Gaps = 22/329 (6%)

Query: 591 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKI 649
           +D ILA      + + D  K+ +   I      P          G +     N+   +  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 650 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 709
           ++                   L    +ST      +    +++ D K     E  V  E 
Sbjct: 61  IDL-------------VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL 107

Query: 710 KSEV-EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 768
                +    A           +     +I+ L +   G     L   G  L    P   
Sbjct: 108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK---LYGLGRDLHVMDPEAG 164

Query: 769 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISL 828
             +  +         Y             +               + A   +   G++++
Sbjct: 165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224

Query: 829 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 888
            +      +  +        S A NP            + +  ++   +  I ++     
Sbjct: 225 DLETGEMAMREVRIMDVFYFSTAVNPAKT---RAFGAYNVLESFDLEKNASIKRVP-LPH 280

Query: 889 RVTGLVFSDALNILVSSGGDAQIFVWDVD 917
               +  S   + +   G    +  +D +
Sbjct: 281 SYYSVNVSTDGSTVWLGGALGDLAAYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 26/300 (8%), Positives = 75/300 (25%), Gaps = 29/300 (9%)

Query: 377 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQ 434
            V D    ++  K   + D G +    + +P G +       S+ +V++    G +  R 
Sbjct: 14  VVIDTEKMAVD-KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72

Query: 435 QLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 493
            L             A S   K +++        +  ++              +   +  
Sbjct: 73  DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132

Query: 494 PHAK-------ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 546
              +        +   ++ +  D  +      +L       +                  
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 547 SCGTSKEGESFLVEWNESEGAIKRTYQGL-------------QLQHNSVSVVHFDTAKDQ 593
                     +    +           GL             +++   V          +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 594 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKILET 652
             A G  +V++ +D+ K   +  +            +  + +G+ + +      +   + 
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHS----YYSVNVSTDGSTVWLGGALGDLAAYDA 308

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 6e-05
 Identities = 33/314 (10%), Positives = 79/314 (25%), Gaps = 40/314 (12%)

Query: 330 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFK 389
           T+ +   +PM     P                  D+ +G+ L   +              
Sbjct: 28  TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---------- 77

Query: 390 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--------SDARQQLEIDAH 441
                +   S+     SPDG  L +  S   ++L  +           ++   + +    
Sbjct: 78  ----EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133

Query: 442 VGNVNDLAFS-------APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 494
              +  LA++          + + V+       ++     +       +     V++   
Sbjct: 134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE 193

Query: 495 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 554
            +       ++   D           G     D                  FS   +   
Sbjct: 194 SSGVMATPFYTARKDIDPADPTAYRTGLLT-MDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 555 ------ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 608
                  + L  ++  + A  +         +S   V+  T    +   G    +  +D 
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRV----PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308

Query: 609 NKVQLLTTIDAGGG 622
             ++    +D  G 
Sbjct: 309 ETLEKKGQVDLPGN 322

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 13/165 (7%), Positives = 40/165 (24%), Gaps = 12/165 (7%)

Query: 459 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 516
           ++       + V D    +  +  +    G                  +++    +    
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLVKID 62

Query: 517 YDSLGARVDYDAP-----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 571
             +       D              A S +G+ L    +    E    E   +  A+   
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 572 YQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 612
               +         ++++ +     ++   G D  +   +   + 
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV 167

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 0.003
 Identities = 15/164 (9%), Positives = 44/164 (26%), Gaps = 9/164 (5%)

Query: 332 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 391
               S        P    +     + G        + + +   +   +  G  +M  +T 
Sbjct: 170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229

Query: 392 ---LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 448
              +     + V     + + +      + ++++ +           ++      +   +
Sbjct: 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN----ASIKRVPLPHSYYSV 285

Query: 449 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 492
             S     +     G    +  +DA T  +    +  G    SL
Sbjct: 286 NVSTDGSTV--WLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 4e-08
 Identities = 44/337 (13%), Positives = 84/337 (24%), Gaps = 32/337 (9%)

Query: 314 SFGETS-FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF 372
            F +T+ F   P+T          + + +   P    +     N        V S     
Sbjct: 2   EFSQTALFPSLPRTA-------RGTAVVLGNTPAGDKI--QYCNGTSVYTVPVGSLTDTE 52

Query: 373 IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA 432
           I                     +          SP G           V+++     +  
Sbjct: 53  I-------------------YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93

Query: 433 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 492
            +   I    G V D        +         +            +       A   + 
Sbjct: 94  LKT-TIPVFSGPVKD-ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151

Query: 493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552
                     I S S D  +  +       +  +         + Y+ +G    S G   
Sbjct: 152 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 211

Query: 553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 612
               +        G  +           SV  + +     +I +A  D  IKIW++  ++
Sbjct: 212 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 271

Query: 613 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 649
           +  TI  G  + E+ ++        L  I+    I  
Sbjct: 272 VEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.9 bits (117), Expect = 9e-07
 Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 7/119 (5%)

Query: 839 TIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 893
            + P  P     TA  L   P   + I      S +      S         HS + T  
Sbjct: 7   ALFPSLPRTARGTAVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVA 64

Query: 894 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 952
             S +     S      + +WD          ++    G +     ++  +        
Sbjct: 65  KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 853 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSGGDA 909
              D   IA    D TI I+N  + +V   +   ++   +  G++++     LVS   + 
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK--QALVSISANG 303

Query: 910 QIFVWDVD 917
            I   + +
Sbjct: 304 FINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.6 bits (111), Expect = 4e-06
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 7/60 (11%)

Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAW 515
           + +   DKTIK+W+  T     +             +          + SIS +G I   
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINFV 308

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.7 bits (124), Expect = 9e-08
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 441 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKEN 499
           H   +  L+ SA  K +   +   +  I  WD  TG     F + H   +  +   +K +
Sbjct: 11  HNKAITALSSSADGKTL--FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68

Query: 500 IHFIFS 505
           +  +  
Sbjct: 69  LFTVSW 74

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 4e-05
 Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 848 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSG 906
           T+L+ +  D   +     +  I  ++  +        + H+  +TG+  +     L +  
Sbjct: 16  TALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVS 73

Query: 907 GDAQIFVWDVDGWGIQTC 924
            D  + V    G G+ + 
Sbjct: 74  WDDHLKVVPAGGSGVDSS 91

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.1 bits (99), Expect = 1e-04
 Identities = 12/69 (17%), Positives = 21/69 (30%)

Query: 878 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 937
            +     GH+K +T L  S     L S+  +  I  WD+                +  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 938 PSETHIQFH 946
            +     F 
Sbjct: 63  TTSKGDLFT 71

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 852 FNPHDNNVIAIGMDDSTILIYNAR--SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA 909
               DN  +A G  D++++++N    S   I     H+      V       +VS+G D+
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS 290

Query: 910 QIFVWDV 916
            I  W+V
Sbjct: 291 NIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (95), Expect = 4e-04
 Identities = 40/298 (13%), Positives = 80/298 (26%), Gaps = 20/298 (6%)

Query: 326 TVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL------------- 371
           ++ Q    G +    ++         L      G    WD+++G                
Sbjct: 3   SIDQVR-YGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60

Query: 372 --FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 429
                   ++ +     L           S   V        LG+A S       A    
Sbjct: 61  IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120

Query: 430 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 489
             A         V    + +  A       +  G   +      ++G+     +    P 
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180

Query: 490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 549
                    N  F+ +     K+  +   +       ++      ++A  +         
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240

Query: 550 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 607
           T     S +V WN ++ +            +SV+ V +      I++AG D  IK W+
Sbjct: 241 TGSLDNSVIV-WNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWN 296

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 2e-07
 Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 15/92 (16%)

Query: 439 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----------GHGA 487
            AH  ++  ++          ++C  D  +KVWD          +            H  
Sbjct: 11  KAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 519
            V          +  + + S  G +  +    
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITR 98

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 4e-07
 Identities = 43/393 (10%), Positives = 104/393 (26%), Gaps = 40/393 (10%)

Query: 580 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC--------- 630
             +  V         ++   D  +K+WD   +      D       +             
Sbjct: 15  ADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72

Query: 631 --FNKNGTLLAVIANENRIKILETPESNSVD-----AAGVLSDNLRKLSVNPISTVTGAG 683
                   L+A  +    +        +           +L  +++K S   +       
Sbjct: 73  ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132

Query: 684 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 743
                  V  D K            ++S      ++   E Q  +      +   + +  
Sbjct: 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 192

Query: 744 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP--RLYQPRHGPQFMVNDTTDSN 801
           +  G       +  V +        L       + +     +   +  PQ  +      +
Sbjct: 193 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 252

Query: 802 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 861
           +         ++    + S S          + +  L     S    SL+FN      + 
Sbjct: 253 NSFGCITLYETEFGERIGSLSVP------THSSQASLGEFAHSSWVMSLSFNDS-GETLC 305

Query: 862 IGMDDSTILIYNARSSEVISKLEGHSKRV----TGLVFSDALNILVSSGGDAQIFVWDVD 917
               D  +  ++ ++ E I+ L  H   +      L   +  + L   G      V+DV 
Sbjct: 306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVK 359

Query: 918 GW--GIQTCRSLQTPDGVMTLAPSETHIQFHKD 948
               G ++       + +  +    + I++ ++
Sbjct: 360 FLKKGWRSGMGADLNESLCCVCLDRS-IRWFRE 391

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 5e-06
 Identities = 33/320 (10%), Positives = 88/320 (27%), Gaps = 48/320 (15%)

Query: 362 LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 421
           +WD         ++               + +    V       + +  L+        +
Sbjct: 38  VWDNKLLDNENPKDKSYSHFV------HKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 91

Query: 422 QLYAYHGGSDAR-------QQLEIDAHVGNVNDLAFSAPCKQIS---VITCGDDKTIKVW 471
             Y      + +         L+ D    +   L + A   ++    ++      T  +W
Sbjct: 92  LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 151

Query: 472 DA-VTGSRTYSFEGHGAPVYSLCPHAKENIH--------------FIFSISVDGKIKAWL 516
                   + S   + +P   L    +  +                I +   +G ++   
Sbjct: 152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISE 211

Query: 517 YDSLGARVDYD-----APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 571
             +L    +++            R    +    L +          +  +    G    +
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271

Query: 572 YQG----------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-- 619
                             + V  + F+ + + + +AG D  ++ WD+   + +TT++   
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331

Query: 620 GGGLPENPRICFNKNGTLLA 639
                E   +  +++G  LA
Sbjct: 332 DDIEIEEDILAVDEHGDSLA 351

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 9e-05
 Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 4/188 (2%)

Query: 306 SLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV 365
               E        S +   +   ++ +  S    S+D       L+  G N G   + ++
Sbjct: 155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISEL 212

Query: 366 NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA 425
           ++ + L+    +   I   + +          +       +  G +              
Sbjct: 213 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 272

Query: 426 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 485
                 ++  L   AH   V  L+F+   + +   + G D  ++ WD  T  R  +   H
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETL--CSAGWDGKLRFWDVKTKERITTLNMH 330

Query: 486 GAPVYSLC 493
              +    
Sbjct: 331 CDDIEIEE 338

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 33/340 (9%), Positives = 85/340 (25%), Gaps = 22/340 (6%)

Query: 596 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 655
                    + D    +++  ID G      P      +G+ +A  A+    +I     +
Sbjct: 23  HFAAVTQQFVIDGEAGRVIGMIDGGFL----PNPVVADDGSFIAH-ASTVFSRIARGERT 77

Query: 656 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 715
           + V+    ++         P +     G      S+  D K  +  + S  A     V+ 
Sbjct: 78  DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-PAPAVGVVDL 136

Query: 716 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 775
              A                   +   +   G                            
Sbjct: 137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 196

Query: 776 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 835
                             +   T +     +     S +  +L +      +        
Sbjct: 197 INHP------AYSQKAGRLVWPTYTGKIHQIDLS--SGDAKFLPAVEALTEAERADGWRP 248

Query: 836 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 895
                +        +       +          +++ +A++ E ++K E     +  +  
Sbjct: 249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINV 307

Query: 896 S--DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV 933
           S  +   +   S GD  +++ D      ++   L++ + +
Sbjct: 308 SQDEKPLLYALSTGDKTLYIHDA-----ESGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.0 bits (115), Expect = 2e-06
 Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 13/142 (9%)

Query: 351 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 410
           L+  T  G     D++SG   F+   +       +                +V +     
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA-------DGWRPGGWQQVAYHRALD 261

Query: 411 LLGVAYSKHIVQLYAYHGGS------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 464
            + +   +     +               ++L        ++ +  S   K +       
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 321

Query: 465 DKTIKVWDAVTGSRTYSFEGHG 486
           DKT+ + DA +G    S    G
Sbjct: 322 DKTLYIHDAESGEELRSVNQLG 343

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.5 bits (93), Expect = 8e-04
 Identities = 21/229 (9%), Positives = 48/229 (20%), Gaps = 38/229 (16%)

Query: 403 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI----DAHVGNVNDLAFSAPCKQIS 458
               P        + +         G     +              +N  A+S    ++ 
Sbjct: 151 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL- 209

Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            +       I   D  +G   +                +       +          L D
Sbjct: 210 -VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 268

Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578
                                            K    F+V  +   G     ++     
Sbjct: 269 Q--------------------------RDEWRHKTASRFVVVLDAKTGERLAKFEM---- 298

Query: 579 HNSVSVVHF--DTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 625
            + +  ++   D        +  D  + I D    + L +++  G  P+
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ 347

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 3e-07
 Identities = 29/326 (8%), Positives = 77/326 (23%), Gaps = 39/326 (11%)

Query: 340 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 399
            +   P +  LL           WD          +  V+     +              
Sbjct: 16  DIKIIPSKSLLL--------ITSWD---------GSLTVYKFDIQAKNVDLLQSLRYKHP 58

Query: 400 VNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
           +    +  +    + V   +  +      G    +     +A++G      +       +
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118

Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
                 +               +   +   V +       N   +     + +++ +   
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178

Query: 519 SLG--------------ARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNE 563
                             R     P         S +GR  +       +  +    +  
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238

Query: 564 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 623
               +      L    NS+    F      +  AG D +I  W++   + +         
Sbjct: 239 RCHRLNLKDTNLAYPVNSIE---FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-- 293

Query: 624 PENPRICFNKNGTLLAVIANENRIKI 649
            E+  +    +  +L +  +++  K 
Sbjct: 294 -EDSVVKIACSDNILCLATSDDTFKT 318

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 21/265 (7%), Positives = 55/265 (20%), Gaps = 14/265 (5%)

Query: 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 458
            ++ +   P  SLL +      + +Y +   +     L+   +   +    F        
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518
            +     + +KV    + S                    ++     S     ++      
Sbjct: 73  YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132

Query: 519 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-L 577
             G     +                   S        S +  +                L
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192

Query: 578 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR--------- 628
           ++    V      ++    +  D  + +   +                +           
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252

Query: 629 ----ICFNKNGTLLAVIANENRIKI 649
               I F+     L    ++  I  
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISC 277

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 5e-06
 Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 19/129 (14%)

Query: 400 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVND 447
            +  +   +      +     V +  +    D             R  L+       VN 
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256

Query: 448 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 506
           + FS   K +   T G D  I  W+  T  +  +F   +   V  +          +   
Sbjct: 257 IEFSPRHKFL--YTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310

Query: 507 SVDGKIKAW 515
           + D   K  
Sbjct: 311 TSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 2e-05
 Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 4/76 (5%)

Query: 842 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE---GHSKRVTGLVFSDA 898
            P    + +   P   +++ I   D ++ +Y          L     +   +    F D 
Sbjct: 9   APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 899 LNILVSSGGDAQIFVW 914
            ++ +  G      + 
Sbjct: 68  TDLQIYVGTVQGEILK 83

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 6/62 (9%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 878 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMT 935
           +++   +     ++ +    + ++L+ +  D  + V+  D     +   +SL+    ++ 
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 936 LA 937
             
Sbjct: 62  CN 63

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.2 bits (110), Expect = 6e-06
 Identities = 35/355 (9%), Positives = 86/355 (24%), Gaps = 44/355 (12%)

Query: 299 PDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG 358
            D+SP        F S G+    D   T    + E       +          + GT  G
Sbjct: 8   EDFSPLDG-DLIAFVSRGQAFIQDVSGTYVLKVPEPLR-IRYVRRGGDTKVAFIHGTREG 65

Query: 359 DT-GLWDVNSGQKL----------------------FIRNFKVWDIGACSMLFKTALVRD 395
           D  G++D  +G+                           +              T + R 
Sbjct: 66  DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125

Query: 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFS 451
               +     S +   +   +     +   Y   +    D   +    A   N +D A +
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA 185

Query: 452 APCKQISVITCGDDKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIF 504
                 ++            D V  +       + +                +       
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245

Query: 505 SISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 563
              ++    ++   +          P      +          +       +  L++++ 
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305

Query: 564 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 618
               +           N+++ +     +  ++   DD  I  + + K +   T++
Sbjct: 306 KTRKVTEV-------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.2 bits (110), Expect = 6e-06
 Identities = 20/159 (12%), Positives = 41/159 (25%), Gaps = 17/159 (10%)

Query: 339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT-------- 390
           ++  F  V    ++            V          + + D+   S             
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269

Query: 391 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 450
             +    +  +  V     +    A  K ++  Y            ++     N+ DL  
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDLRL 322

Query: 451 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 489
           SA  K +  +   DD  I  +         + E    P+
Sbjct: 323 SADRKTV--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 38/394 (9%), Positives = 89/394 (22%), Gaps = 97/394 (24%)

Query: 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 396
           S  + DF P+   L+   +  G   + DV+    L +                       
Sbjct: 4   SKFAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKVPE--------------------- 41

Query: 397 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS----- 451
            + +  V    D  +  +  ++    L  Y   +   +  + + ++GNV  +        
Sbjct: 42  PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--GKAEKFEENLGNVFAMGVDRNGKF 99

Query: 452 ---------------------------------------------APCKQISVITCGDDK 466
                                                            +         +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159

Query: 467 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 526
            I V+D        +   +    +   P    +   ++ +S      +     L    + 
Sbjct: 160 AIHVYDMEGRKIFAATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV 216

Query: 527 DAPGLGCT-------RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 579
            +                         +                 +    R    L+   
Sbjct: 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276

Query: 580 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 639
              SV            A +  V+  +D+   ++    +    L        + +   + 
Sbjct: 277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL------RLSADRKTVM 330

Query: 640 VIANENRIKI--LETPESNSVDAAGVLSDNLRKL 671
           V  ++ +I    LE PE         +  + R L
Sbjct: 331 VRKDDGKIYTFPLEKPEDER-----TVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.4 bits (95), Expect = 4e-04
 Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 852 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 911
            +           +   +L Y+ ++     K+      +T L  S     ++    D +I
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKI 338

Query: 912 FVWDVDG 918
           + + ++ 
Sbjct: 339 YTFPLEK 345

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (111), Expect = 8e-06
 Identities = 28/231 (12%), Positives = 51/231 (22%), Gaps = 16/231 (6%)

Query: 397 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAP 453
           G +V+    S  G  L V      V +       +     EI                  
Sbjct: 61  GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK-EPTTVAEIKIGSEARSIETSKMEGWE 119

Query: 454 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----------FI 503
            K   +          + D  T          G        H +  +           FI
Sbjct: 120 DKYA-IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 178

Query: 504 FSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 562
            ++   GKI    Y  L   +    +            + R   +   ++     +    
Sbjct: 179 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238

Query: 563 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 613
               AI+ T           + VH         +   D  + +   +    
Sbjct: 239 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH 289

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (90), Expect = 0.003
 Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 7/148 (4%)

Query: 842 PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 900
            P    T    +    N+ ++   D   I + +  + E+ + L+     V     S +  
Sbjct: 16  APEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR 74

Query: 901 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--T 958
            L   G D ++ + D+      T   ++      ++  S        +    +       
Sbjct: 75  YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS---KMEGWEDKYAIAGAYWPP 131

Query: 959 HLAIYEAEELTCLKQWFPISSVPISQAT 986
              I + E L   K           Q  
Sbjct: 132 QYVIMDGETLEPKKIQSTRGMTYDEQEY 159

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 26/296 (8%), Positives = 54/296 (18%), Gaps = 66/296 (22%)

Query: 334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 393
                  +        LL             V           ++    +C  +      
Sbjct: 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD-----QLTKSASCFHIH----- 171

Query: 394 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 453
             PG +    + S   SL     +                Q     A   N   +   A 
Sbjct: 172 --PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229

Query: 454 CKQISVITCGDDKTIKVWD---AVTGSRTYSFEGHGAPVYSLCPHAKE---NIHFIFSIS 507
              I                    +G +  +F   G  + +   +               
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289

Query: 508 VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 566
           +           S+G      + G     +  + +G                        
Sbjct: 290 LAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN-------------------- 329

Query: 567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 622
                                         +    V+ I+D    Q  ++++   G
Sbjct: 330 ---------------------------YANSAGTEVLDIYDAASDQDQSSVELDKG 358

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.6 bits (104), Expect = 5e-05
 Identities = 30/301 (9%), Positives = 60/301 (19%), Gaps = 51/301 (16%)

Query: 390 TALVRDPGVSVNRVVWSPDGSLLGVA----------YSKHIVQLYAYHGGSDARQQLEID 439
             L    G  ++  V    GS   +A               V+++            +I+
Sbjct: 57  VTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---LPIADIE 113

Query: 440 AH-------VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 492
                       V+ +   A    + +                 S     +         
Sbjct: 114 LPDAPRFSVGPRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH- 171

Query: 493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------APGLGCTRMAYS 539
            P A       +  S    + A    +  A                  A       M   
Sbjct: 172 -PGAA---ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW 227

Query: 540 ANGRRLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQ--HNSVSVVHFDTAKDQI 594
           A    +        G +     + +E           G Q+     +   +   T +   
Sbjct: 228 AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR 287

Query: 595 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE--NRIKILE 651
                         +  Q    I  G         I   ++G       +     + I +
Sbjct: 288 SCLAAAENTSSVTASVGQTSGPISNGHD----SDAIIAAQDGASDNYANSAGTEVLDIYD 343

Query: 652 T 652
            
Sbjct: 344 A 344

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.3 bits (98), Expect = 2e-04
 Identities = 20/274 (7%), Positives = 56/274 (20%), Gaps = 26/274 (9%)

Query: 224 PQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKVAVTMDRPEDSDI--LSEKSPVRIL 281
           P T    +      +           +     +  +   +     +    +   S  ++ 
Sbjct: 103 PVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLT 162

Query: 282 NEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSM 341
              +    +PG             S    +  S    + +      AQ     + S  + 
Sbjct: 163 KSASCFHIHPGA-----AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA 217

Query: 342 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 401
             +        V          D+ +                                  
Sbjct: 218 QANYPGML---VWAVASSILQGDIPAAGATMKAAIDG-------NESGRKADNFRSAGFQ 267

Query: 402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPC 454
            V    +   + +   +H                     Q     ++  + + +  +   
Sbjct: 268 MVAKLKNTDGIMILTVEHS--RSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDG 325

Query: 455 KQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 488
              +       + + ++DA +     S E    P
Sbjct: 326 ASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 40/381 (10%), Positives = 93/381 (24%), Gaps = 47/381 (12%)

Query: 596 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETPE 654
              D   I + D +  +++  ID G           + +G  L VI  + RI  I    +
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVIDTGYA-VHI--SRMSASGRYLLVIGRDARIDMIDLWAK 93

Query: 655 SNSVDAAGVLSDNLRKLSVNPISTVTG-----AGIANGSVSVNEDPKEDVKPEISVEAEN 709
             +  A   +    R +  +                    ++ +    + K  +S     
Sbjct: 94  EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153

Query: 710 KSEVEKPLFARP-----SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 764
                     R      S      + +  +  K+  + Y +              L    
Sbjct: 154 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG 213

Query: 765 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV----------PCFALSKN 814
             +       A               +                         P ++ S  
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273

Query: 815 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI------GMDDST 868
                S  G     +    +K +  +      +  +  +P  +++              +
Sbjct: 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 333

Query: 869 ILIYNARSSEVISK---------LEGHSKRVTGLVFS-DALNILVSSGGDA----QIFVW 914
           + +++ ++ +   +         L   +KRV    ++     +  S          + V 
Sbjct: 334 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 393

Query: 915 DVDG---WGIQTCRSLQTPDG 932
           D        +     L TP G
Sbjct: 394 DDKTLKLKAVVKDPRLITPTG 414

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.9 bits (97), Expect = 3e-04
 Identities = 21/212 (9%), Positives = 54/212 (25%), Gaps = 9/212 (4%)

Query: 842  PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 900
             P         +    N+ ++   D   I + +  S +++  ++     V     S +  
Sbjct: 16   KPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGR 74

Query: 901  ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-- 958
             L+  G DA+I + D+          ++      ++    +      +    +       
Sbjct: 75   YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE---SSKFKGYEDRYTIAGAYWPP 131

Query: 959  HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH--EASNLEVQCR 1016
              AI + E L   +          +Q            +  +    I   + +   +   
Sbjct: 132  QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191

Query: 1017 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1048
                  L  T+     +               
Sbjct: 192  YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT 223

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)

Query: 416 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 475
                    +       +    I     +   +A +   K++  +      T+ V D  T
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKV-YVALSFCNTVSVIDTAT 275

Query: 476 GSRTYSFEGHGAP 488
            + T +      P
Sbjct: 276 NTITATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 38/291 (13%), Positives = 77/291 (26%), Gaps = 16/291 (5%)

Query: 596 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE-NRIKILETP 653
           A  +   I + D+   ++  TI  G     NP     + +GT + V     N + I++T 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAHSNDVSIIDT- 61

Query: 654 ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 713
                 A   +   +   S      V+  G      ++       +    +  A      
Sbjct: 62  ------ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG 115

Query: 714 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 773
           + PL    S     L  +      +S +                   +      D T   
Sbjct: 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT--PDGTKVY 173

Query: 774 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT 833
            A                 +     ++           +K            +S+    T
Sbjct: 174 VANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233

Query: 834 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 884
            K    I P  P    +A  P    V       +T+ + +  ++ + + + 
Sbjct: 234 NKITARI-PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (88), Expect = 0.003
 Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 6/179 (3%)

Query: 455 KQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 512
           KQ   I   + + I VW+                  V  +     +  +    +  + ++
Sbjct: 3   KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRV 61

Query: 513 KAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 569
            A+               A     T ++    G+ +F    +    S     +     + 
Sbjct: 62  LAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121

Query: 570 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 628
              +GL   H++       T     L      +  + D   +      +        PR
Sbjct: 122 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1093
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.55
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.55
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.54
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.28
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.26
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.21
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.12
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.05
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.96
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.94
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.94
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.93
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.92
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.89
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.88
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.88
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.87
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.77
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.63
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.59
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.38
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.31
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.26
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.94
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.92
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.82
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.81
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.79
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.75
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.74
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.73
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.71
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.7
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.7
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.7
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.65
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.61
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.58
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.55
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.49
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.47
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.43
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.17
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.1
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.06
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	96.06
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.18
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.21
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.01
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	93.49
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.34
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.32
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	91.75
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.65
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.42
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	91.38
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.1
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	87.73
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	86.11
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	82.94

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-36  Score=329.58  Aligned_cols=287  Identities=13%  Similarity=0.172  Sum_probs=248.2

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  412 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l  412 (1093)
                      +|++.|+|++|||+|++ ||+|+ ||.|+|||+.++.....              +......+|.+.|.+++|+|||++|
T Consensus        49 ~H~~~V~~v~fs~~g~~-latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~s~dg~~l  112 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKLLPDGCTL  112 (337)
T ss_dssp             CCSSCCCEEEECSSSSE-EEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEECTTSSEE
T ss_pred             CCCCcEEEEEECCCCCE-EEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEEEcCCCCEE
Confidence            69999999999999995 88987 89999999987654321              1112256799999999999999999


Q ss_pred             EEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEe
Q 001352          413 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  492 (1093)
Q Consensus       413 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  492 (1093)
                      ++|+.|++|++||+..... .....+.+|...|.+++|+|++.  ++++++.|+.|++||+.++++.....+|...|.++
T Consensus       113 ~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l  189 (337)
T d1gxra_         113 IVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI  189 (337)
T ss_dssp             EEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             EEeeccccccccccccccc-ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence            9999999999999886543 22336778999999999999999  89999999999999999999999999999999999


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeee
Q 001352          493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  572 (1093)
Q Consensus       493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  572 (1093)
                      +|++  ++..+++++.||.+++||+++.+....+. +...|.+++|+|+++++++++.    ++.+++||+.+++... .
T Consensus       190 ~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~-~  261 (337)
T d1gxra_         190 DISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNKPDKYQ-L  261 (337)
T ss_dssp             EECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTSSCEEE-E
T ss_pred             cccc--cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc----cccccccccccccccc-c
Confidence            9954  66799999999999999999887665554 5678999999999999999886    5669999999887653 3


Q ss_pred             ecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352          573 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  652 (1093)
Q Consensus       573 ~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  652 (1093)
                      ..|.   ..|.+++|+|++++|++++.||.|++||+.+++.+..+...   ..|.+++|+|++++|++++.||+|+|||+
T Consensus       262 ~~~~---~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         262 HLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cccc---cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            4444   78999999999999999999999999999999998887643   45899999999999999999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.4e-36  Score=325.79  Aligned_cols=287  Identities=21%  Similarity=0.362  Sum_probs=262.7

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      ++|+||++.|++++|+|+++ +||+|+.||+|+|||+.+++.+..                   +.+|...|.+++|+|+
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~~   70 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHS   70 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTT
T ss_pred             EEEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeeecc
Confidence            57999999999999999998 599999999999999999988865                   6789999999999999


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  488 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  488 (1093)
                      +.++++++.++.+.+|+....+...   .+.+|...+.++.|++++.  .+++++.|+.+++||+.+++.+..+.+|...
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  145 (317)
T d1vyhc1          71 GKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREW  145 (317)
T ss_dssp             SSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             ccccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCc
Confidence            9999999999999999998865433   4668999999999999999  7999999999999999999999999999999


Q ss_pred             eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCC--------------------EEEEE
Q 001352          489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR--------------------RLFSC  548 (1093)
Q Consensus       489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~--------------------~l~~~  548 (1093)
                      +.++++++  ++.+|++++.||.|++|++.+......+..+...+.++.++|++.                    .++++
T Consensus       146 ~~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (317)
T d1vyhc1         146 VRMVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  223 (317)
T ss_dssp             EEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             ceeeeccc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec
Confidence            99999854  668999999999999999999999999999999999999987643                    56666


Q ss_pred             ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352          549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  628 (1093)
Q Consensus       549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  628 (1093)
                      +.    ++.|++||..+++.+..+.+|.   ..|.+++|+|++++|++|+.||.|++||+.+++++..+..|.  ..|.+
T Consensus       224 ~~----d~~i~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~--~~V~~  294 (317)
T d1vyhc1         224 SR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVTS  294 (317)
T ss_dssp             ET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEEE
T ss_pred             cC----CCEEEEEECCCCcEEEEEeCCC---CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCC--CCEEE
Confidence            64    6779999999999999999987   899999999999999999999999999999999999998764  46999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEE
Q 001352          629 ICFNKNGTLLAVIANENRIKILE  651 (1093)
Q Consensus       629 v~~s~~~~~l~~~~~dg~i~iw~  651 (1093)
                      ++|+|++++|++++.||+|++||
T Consensus       295 ~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         295 LDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.4e-35  Score=317.69  Aligned_cols=290  Identities=16%  Similarity=0.201  Sum_probs=247.3

Q ss_pred             CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352          334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  413 (1093)
Q Consensus       334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la  413 (1093)
                      +.+.+.+++++|+|+. +|.+. ++.|.+||+.++.....                   +.+|.+.|++++|+|||++||
T Consensus        16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~la   74 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA   74 (311)
T ss_dssp             CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred             CCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeEE-------------------EcCCCCCEEEEEEeCCCCeEe
Confidence            4456778999999996 56654 56799999999877754                   678999999999999999999


Q ss_pred             EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC--CCcEEEEECCCCceeEEeecCCCCeEE
Q 001352          414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVYS  491 (1093)
Q Consensus       414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~vwd~~~~~~~~~~~~h~~~v~~  491 (1093)
                      +|+.||+|+|||+.+++.... ..+.+|..+|.+++|+|+++  ++++++.  +..++||++++++...++.+|...|++
T Consensus        75 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~  151 (311)
T d1nr0a1          75 SGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS  151 (311)
T ss_dssp             EEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred             ccccCceEeeeeeeccccccc-cccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence            999999999999998775432 35778999999999999999  6777764  567999999999999999999999999


Q ss_pred             eeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeee
Q 001352          492 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT  571 (1093)
Q Consensus       492 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  571 (1093)
                      ++|++..+ ..+++|+.||.|++||+++.+.......+...|.++.++|+++++++++.    ++.|++||..++.....
T Consensus       152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~~  226 (311)
T d1nr0a1         152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGV  226 (311)
T ss_dssp             EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEE
T ss_pred             ccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccc----ccccccccccccccccc
Confidence            99976432 35889999999999999999988899999999999999999999999886    66799999999888776


Q ss_pred             eeccc----ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeE
Q 001352          572 YQGLQ----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI  647 (1093)
Q Consensus       572 ~~~~~----~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i  647 (1093)
                      +....    .|...|.+++|+|++++|++|+.||.|+|||+++++++..+..+... ....+.+.+++..+++++.||.|
T Consensus       227 ~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~i  305 (311)
T d1nr0a1         227 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFI  305 (311)
T ss_dssp             CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCCE
T ss_pred             ccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCEE
Confidence            65322    23478999999999999999999999999999999999998766432 23445666677789999999999


Q ss_pred             EEEEcC
Q 001352          648 KILETP  653 (1093)
Q Consensus       648 ~iw~~~  653 (1093)
                      ++||.+
T Consensus       306 ~~wd~d  311 (311)
T d1nr0a1         306 NFVNPE  311 (311)
T ss_dssp             EEEETT
T ss_pred             EEEeCC
Confidence            999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-34  Score=315.02  Aligned_cols=283  Identities=13%  Similarity=0.181  Sum_probs=241.8

Q ss_pred             CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceE--EeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +|...|.+++|||+|++||+|+ ||.|+|||+.++.......  ...+|.+.|.+++|+||++  +|++|+.|++|++||
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC--EEEEeeccccccccc
Confidence            6999999999999999999987 7899999998765443322  3457999999999999999  899999999999999


Q ss_pred             CCC--CceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001352          473 AVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  550 (1093)
Q Consensus       473 ~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~  550 (1093)
                      +..  ++....+..|...+..+++++  ++.++++++.|+.|++|++.+.+.......+...+.+++|++++..+++++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~  203 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL  203 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            874  456677888999999999854  6689999999999999999999888888889999999999999999999886


Q ss_pred             CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352          551 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  630 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  630 (1093)
                          ++.+++||+++++.+..+. +.   ..|.+++|+|+++++++++.|+.+++||+.+++.....   .+...|.+++
T Consensus       204 ----d~~v~i~d~~~~~~~~~~~-~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~v~  272 (337)
T d1gxra_         204 ----DNTVRSWDLREGRQLQQHD-FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH---LHESCVLSLK  272 (337)
T ss_dssp             ----TSEEEEEETTTTEEEEEEE-CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC---CCSSCEEEEE
T ss_pred             ----cccccccccccceeecccc-cc---cceEEEEEcccccccceecccccccccccccccccccc---ccccccceEE
Confidence                6779999999999887665 33   68999999999999999999999999999988876443   2345699999


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccc
Q 001352          631 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  710 (1093)
Q Consensus       631 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~  710 (1093)
                      |+|++++|++++.||.|++|+..+++.+....                                                
T Consensus       273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~------------------------------------------------  304 (337)
T d1gxra_         273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------------------------------------------------  304 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------------------------------------------------
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc------------------------------------------------
Confidence            99999999999999999999998775543221                                                


Q ss_pred             ceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeee
Q 001352          711 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  764 (1093)
Q Consensus       711 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~  764 (1093)
                                             |...|.+++|+|++++|++++.||.|++|++
T Consensus       305 -----------------------~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         305 -----------------------ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             -----------------------CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             -----------------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence                                   4456777888888888888888888888875

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-34  Score=312.12  Aligned_cols=315  Identities=20%  Similarity=0.307  Sum_probs=264.2

Q ss_pred             EEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001352          470 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  549 (1093)
Q Consensus       470 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~  549 (1093)
                      .|. ......++|+||.++|++++|+|  ++.+|++|+.||+|++||+.+++....+..|...|.+++++|++.+++++.
T Consensus         2 ~w~-p~~~~~~~L~GH~~~I~~l~~sp--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~   78 (317)
T d1vyhc1           2 EWI-PRPPEKYALSGHRSPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS   78 (317)
T ss_dssp             CCC-CCSSCSCEEECCSSCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccC-CCCCccEEEcCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccc
Confidence            353 33455678999999999999965  567999999999999999999999999999999999999999999999987


Q ss_pred             cCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceE
Q 001352          550 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  629 (1093)
Q Consensus       550 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  629 (1093)
                      .    +..+..|+.........+.++.   ..+.++.++|+++.+++++.|+.+++||+.+++.+..+..+.  ..+.++
T Consensus        79 ~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~  149 (317)
T d1vyhc1          79 A----DMTIKLWDFQGFECIRTMHGHD---HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--EWVRMV  149 (317)
T ss_dssp             T----TSCCCEEETTSSCEEECCCCCS---SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEE
T ss_pred             c----cccccccccccccccccccccc---ccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCC--Ccceee
Confidence            6    5558899999888888888777   889999999999999999999999999999999998887664  458899


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccc
Q 001352          630 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  709 (1093)
Q Consensus       630 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  709 (1093)
                      +|+|+++++++++.|+.+++|+..+......+..+...+.                                        
T Consensus       150 ~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~----------------------------------------  189 (317)
T d1vyhc1         150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE----------------------------------------  189 (317)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE----------------------------------------
T ss_pred             ecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCce----------------------------------------
Confidence            9999999999999999999999998877666655444444                                        


Q ss_pred             cceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCC
Q 001352          710 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  789 (1093)
Q Consensus       710 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (1093)
                                                    .+.++|++......                                    
T Consensus       190 ------------------------------~~~~~~~~~~~~~~------------------------------------  203 (317)
T d1vyhc1         190 ------------------------------CISWAPESSYSSIS------------------------------------  203 (317)
T ss_dssp             ------------------------------EEEECCSCGGGGGG------------------------------------
T ss_pred             ------------------------------EEEEeeccccceee------------------------------------
Confidence                                          44444433211000                                    


Q ss_pred             CceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCe
Q 001352          790 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDST  868 (1093)
Q Consensus       790 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~  868 (1093)
                                  ............++.++++++ |+.|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.||.
T Consensus       204 ------------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~  270 (317)
T d1vyhc1         204 ------------EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKT  270 (317)
T ss_dssp             ------------GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTE
T ss_pred             ------------ccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-CCCEEEEEECCCe
Confidence                        011111223345667777777 79999999999999999999999999999999 8999999999999


Q ss_pred             EEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q 001352          869 ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  915 (1093)
Q Consensus       869 i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd  915 (1093)
                      |++||+.+++++..+.+|.+.|++++|+|++++|++++.||+|+|||
T Consensus       271 i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         271 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.8e-34  Score=319.86  Aligned_cols=302  Identities=15%  Similarity=0.225  Sum_probs=240.1

Q ss_pred             cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352          333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  412 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l  412 (1093)
                      +|++.|+|++|||||+ +||+|+ |++|+|||+.+++.+.......... ............+|...|.+++|+|+|++|
T Consensus        60 ~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l  136 (388)
T d1erja_          60 DHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSPDGKFL  136 (388)
T ss_dssp             ECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEE
T ss_pred             CCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeeccccccc-ccccccccccccCCCCCEEEEEECCCCCcc
Confidence            6999999999999998 589986 8999999999999876532210000 000111222355788999999999999999


Q ss_pred             EEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEe
Q 001352          413 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  492 (1093)
Q Consensus       413 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  492 (1093)
                      ++|+.||.|++||...++.+.   .+.+|...|.+++|++++.  .+++++.++.+++||..+.........+... .++
T Consensus       137 ~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~  210 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV-TTV  210 (388)
T ss_dssp             EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECSSCE-EEE
T ss_pred             eeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeecccccccccccccccc-ccc
Confidence            999999999999999886554   6778999999999999998  7999999999999999999888877655554 444


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352          493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  565 (1093)
Q Consensus       493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~  565 (1093)
                      .+. ..++.+|++++.||.|++|+..+......+       ..|...|.+++|+|++++|++++.    ++.|++||+.+
T Consensus       211 ~~~-~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~iwd~~~  285 (388)
T d1erja_         211 AVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQN  285 (388)
T ss_dssp             EEC-STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC--
T ss_pred             ccc-CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcEEEEeccC
Confidence            454 346789999999999999999988766544       345678999999999999999986    67799999987


Q ss_pred             Ceee------------eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE---
Q 001352          566 GAIK------------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC---  630 (1093)
Q Consensus       566 ~~~~------------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~---  630 (1093)
                      +...            .....|   ...|.+++|+|++++|++|+.||.|++||+.+++++..+..|.  ..|.+++   
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~--~~V~~~~~~~  360 (388)
T d1erja_         286 ANNKSDSKTPNSGTCEVTYIGH---KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVISVAVAN  360 (388)
T ss_dssp             -------------CEEEEEECC---SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS
T ss_pred             Cccccccccccccceeeecccc---cceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCC--CCEEEEEEec
Confidence            6543            223333   3789999999999999999999999999999999999998764  3577776   


Q ss_pred             ---EecCCCEEEEEECCCeEEEEEcC
Q 001352          631 ---FNKNGTLLAVIANENRIKILETP  653 (1093)
Q Consensus       631 ---~s~~~~~l~~~~~dg~i~iw~~~  653 (1093)
                         |+|++++|++++.||+|++|+++
T Consensus       361 ~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         361 GSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CcccCCCCCEEEEEeCCCEEEEEeee
Confidence               46789999999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-33  Score=318.10  Aligned_cols=325  Identities=14%  Similarity=0.165  Sum_probs=258.7

Q ss_pred             EEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcc
Q 001352          353 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA  432 (1093)
Q Consensus       353 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~  432 (1093)
                      .+..++...+|+....+.....             +..  ..+|.+.|+|++|||||++||+|+ |++|+|||+.+++.+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~-------------l~~--~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~   96 (388)
T d1erja_          33 KKQTNDYYILYNPALPREIDVE-------------LHK--SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV   96 (388)
T ss_dssp             EEECSSCEEEECTTSCCCEEEE-------------EEE--EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE
T ss_pred             ccCCCCcEEEeCCCCCcceeee-------------eEe--eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceE
Confidence            4556778889997766543210             001  236999999999999999999986 889999999988754


Q ss_pred             cce---------------EEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeeccc
Q 001352          433 RQQ---------------LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK  497 (1093)
Q Consensus       433 ~~~---------------~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~  497 (1093)
                      ...               ....+|...|++++|+|+++  +|++|+.||.|++||..+++.+..+.+|...|.++++++ 
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-  173 (388)
T d1erja_          97 ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-  173 (388)
T ss_dssp             EEECC-----------------CCCCBEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-
T ss_pred             eeecccccccccccccccccccCCCCCEEEEEECCCCC--cceeccccccccccccccccccccccccccccccccccc-
Confidence            321               12235777899999999999  899999999999999999999999999999999999854 


Q ss_pred             CCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc-
Q 001352          498 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-  576 (1093)
Q Consensus       498 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-  576 (1093)
                       ++..+++++.++.+++||..+.........+...+....+.+++++|++++.    ++.|++||..++.....+.... 
T Consensus       174 -~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~i~~~~~~~~~~~~~~~~~  248 (388)
T d1erja_         174 -SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENE  248 (388)
T ss_dssp             -TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC----
T ss_pred             -ccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcC----CCeEEEeecccCccceeeccccc
Confidence             5679999999999999999988777776666655555555668899999876    5669999999988776654321 


Q ss_pred             ---ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe----------cCCCCCCCceEEEecCCCEEEEEEC
Q 001352          577 ---LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID----------AGGGLPENPRICFNKNGTLLAVIAN  643 (1093)
Q Consensus       577 ---~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~v~~v~~s~~~~~l~~~~~  643 (1093)
                         .|...|.+++|+|++++|++++.||.|++||+.++.......          ...+...|.+++|+|++++|++|+.
T Consensus       249 ~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~  328 (388)
T d1erja_         249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK  328 (388)
T ss_dssp             --CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC
Confidence               234789999999999999999999999999998765432211          1123456899999999999999999


Q ss_pred             CCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceeccee
Q 001352          644 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  717 (1093)
Q Consensus       644 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  717 (1093)
                      ||.|++||+.+++.+..+.+|...|.++++.+....                +|+++++++++.||+|++|+++
T Consensus       329 dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~----------------spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL----------------GPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT----------------CTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCccc----------------CCCCCEEEEEeCCCEEEEEeee
Confidence            999999999999999999999999999888643221                6899999999999999999975

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-33  Score=308.27  Aligned_cols=291  Identities=19%  Similarity=0.272  Sum_probs=255.6

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      ++|+||++.|++++|+|+++ +||+|+.||+|+|||+.+++.+..                   +.+|..+|.+++|+|+
T Consensus        49 ~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~~~~~  108 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAYAPS  108 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEEECTT
T ss_pred             EEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEE-------------------EecccccEEeeEeecc
Confidence            57999999999999999998 599999999999999999988765                   6679999999999999


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcc-cceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  487 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~  487 (1093)
                      ++++++|+.|+.+.+|+....... .....+.+|...........+.   .+.....|.....|+............+..
T Consensus       109 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (340)
T d1tbga_         109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTG  185 (340)
T ss_dssp             SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEECCSS
T ss_pred             ceeeeeecccceeecccccccccccccceeccccccccccccccccc---ccccccccccccccccccccccccccccce
Confidence            999999999999999998765432 2334567888877777766654   578888899999999988888888888888


Q ss_pred             CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352          488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  567 (1093)
Q Consensus       488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~  567 (1093)
                      .+....+.+  .+.++++++.|+.|++||+++......+..|...|.+++|+|++++|++++.    ++.|++||+....
T Consensus       186 ~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~~~~~  259 (340)
T d1tbga_         186 DVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRADQ  259 (340)
T ss_dssp             CEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTE
T ss_pred             eEeeecccc--ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEeecccc
Confidence            888887754  5579999999999999999999999999999999999999999999999986    6679999999988


Q ss_pred             eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeE
Q 001352          568 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI  647 (1093)
Q Consensus       568 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i  647 (1093)
                      ....+.... +...+.+++|+|++++|++|+.||.|++||+.+++.+..+..|.  ..|.+++|+|++++|++++.||.|
T Consensus       260 ~~~~~~~~~-~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~--~~V~~l~~s~d~~~l~s~s~Dg~v  336 (340)
T d1tbga_         260 ELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             EEEEECCTT-CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTSCE
T ss_pred             ccccccccc-ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEccCCEE
Confidence            877665433 34679999999999999999999999999999999999998764  469999999999999999999999


Q ss_pred             EEEE
Q 001352          648 KILE  651 (1093)
Q Consensus       648 ~iw~  651 (1093)
                      ++||
T Consensus       337 ~iWd  340 (340)
T d1tbga_         337 KIWN  340 (340)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.8e-33  Score=302.96  Aligned_cols=292  Identities=13%  Similarity=0.139  Sum_probs=229.1

Q ss_pred             HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      .+++.||++.|++++|||||+ +||+|+.||+|++||+.+++.+...                  ..+|...|.+++|+|
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~~------------------~~~h~~~v~~v~~~~   65 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVF------------------PDVHATMITGIKTTS   65 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECS------------------SCSCSSCEEEEEECT
T ss_pred             ceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEE------------------cCCCCCcEEEEEeec
Confidence            367899999999999999998 5899999999999999999877531                  346999999999999


Q ss_pred             CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC
Q 001352          408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  487 (1093)
Q Consensus       408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~  487 (1093)
                      +|+++ +++.|+.+++|+...............|...+.+++|+++++  +++++ .++.+++|+..  +.....  ...
T Consensus        66 ~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~-~~~~i~~~~~~--~~~~~~--~~~  137 (299)
T d1nr0a2          66 KGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAA-CYKHIAIYSHG--KLTEVP--ISY  137 (299)
T ss_dssp             TSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEE-ESSEEEEEETT--EEEEEE--CSS
T ss_pred             cceee-cccceeeEEEeccCCccccccccccccccccccccccccccc--ccccc-ccccccccccc--cccccc--ccc
Confidence            99755 556789999999876543322223446788899999999998  45544 46789999843  222222  344


Q ss_pred             CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352          488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  566 (1093)
Q Consensus       488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~  566 (1093)
                      .+.+++++  +++.++++++.||.|++||+++..... ....+...|.+++|+|+++++++++.    ++.|++||+.++
T Consensus       138 ~~~~~~~s--~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~  211 (299)
T d1nr0a2         138 NSSCVALS--NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVANN  211 (299)
T ss_dssp             CEEEEEEC--TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGGGT
T ss_pred             cccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccc
Confidence            57778885  466899999999999999998766543 44567789999999999999999876    566999999888


Q ss_pred             eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCC-CCCceEEEecCCCEEEEEECCC
Q 001352          567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLAVIANEN  645 (1093)
Q Consensus       567 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg  645 (1093)
                      ...........|...|.+++|+|++++|++|+.||.|++||+.++..........+. ..+.++ +++++++|++++.|+
T Consensus       212 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~  290 (299)
T d1nr0a2         212 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDS  290 (299)
T ss_dssp             TEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTS
T ss_pred             ccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCC
Confidence            766554443334489999999999999999999999999999987655444333322 334444 556678999999999


Q ss_pred             eEEEEEcC
Q 001352          646 RIKILETP  653 (1093)
Q Consensus       646 ~i~iw~~~  653 (1093)
                      .|++||+.
T Consensus       291 ~i~iWdl~  298 (299)
T d1nr0a2         291 NIKFWNVP  298 (299)
T ss_dssp             CEEEEECC
T ss_pred             EEEEEecc
Confidence            99999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-32  Score=305.06  Aligned_cols=343  Identities=17%  Similarity=0.259  Sum_probs=247.0

Q ss_pred             eeecCCCCCe-EEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352          391 ALVRDPGVSV-NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  469 (1093)
Q Consensus       391 ~~~~~h~~~V-~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  469 (1093)
                      ..|.||...| +|++|  |+++||+|+.||+|+|||+.+++.+.   ++.+|.++|++++|+|++   +|++|+.|++|+
T Consensus         6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~   77 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVR   77 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEE
T ss_pred             EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEecccccc
Confidence            3488999886 55555  68999999999999999999987555   788999999999999864   699999999999


Q ss_pred             EEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001352          470 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  549 (1093)
Q Consensus       470 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~  549 (1093)
                      +|+...++.......+............+++.++++++.|+.|++||+................ .....+..       
T Consensus        78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~-------  149 (355)
T d1nexb2          78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-LVFHTPEE-------  149 (355)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC-EEESCTTT-------
T ss_pred             cccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec-cceecccc-------
Confidence            9999999988877666666655555556788899999999999999998755433222111110 01111110       


Q ss_pred             cCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceE
Q 001352          550 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  629 (1093)
Q Consensus       550 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  629 (1093)
                                     ..........+.   ..+.  .+.++++.++++..|+.+++||+.+++.+.....+.  ..+.++
T Consensus       150 ---------------~~~~~~~~~~~~---~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~  207 (355)
T d1nexb2         150 ---------------NPYFVGVLRGHM---ASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--DRIYST  207 (355)
T ss_dssp             ---------------CTTEEEEEECCS---SCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEE
T ss_pred             ---------------ccceeeeeeecc---cccc--ccccccceeeeecccceeeeeecccccceeeeeccc--cccccc
Confidence                           111112222222   3343  345677899999999999999999999888876553  357889


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccc
Q 001352          630 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  709 (1093)
Q Consensus       630 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  709 (1093)
                      .++|++.++++++.|+.|++|+..++..+..+.+                                              
T Consensus       208 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----------------------------------------------  241 (355)
T d1nexb2         208 IYDHERKRCISASMDTTIRIWDLENGELMYTLQG----------------------------------------------  241 (355)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTTCCEEEEECC----------------------------------------------
T ss_pred             cccccceeeecccccceEEeeecccccccccccc----------------------------------------------
Confidence            9999999999999999999999876543332221                                              


Q ss_pred             cceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCC
Q 001352          710 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  789 (1093)
Q Consensus       710 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (1093)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (355)
T d1nexb2         242 --------------------------------------------------------------------------------  241 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEE-EEcCCCCCEEEEEeCCC
Q 001352          790 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSL-AFNPHDNNVIAIGMDDS  867 (1093)
Q Consensus       790 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l-~~s~~d~~~lasg~~dg  867 (1093)
                                  |...|.+++++  +++|++++ ||.|++||+.++.....  .|...+.++ ++++ ++++|++|+ ||
T Consensus       242 ------------h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~-~~~~l~~g~-d~  303 (355)
T d1nexb2         242 ------------HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYV-SDNILVSGS-EN  303 (355)
T ss_dssp             ------------CSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEE--EECTTCCCCCEEEE-CSSEEEEEE-TT
T ss_pred             ------------ccccccccccc--cceeeeeecccccccccccccceecc--cccCCceEEEEEcC-CCCEEEEEe-CC
Confidence                        44455555554  34666665 57777777776654433  344555554 4566 777777665 89


Q ss_pred             eEEEEEcCCcceee-ecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeC
Q 001352          868 TILIYNARSSEVIS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV  916 (1093)
Q Consensus       868 ~i~iwd~~~~~~~~-~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~  916 (1093)
                      .|++||+++++++. .+.+|.++|.+++|+|+ .++++++.||+++||.+
T Consensus       304 ~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         304 QFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            99999999999885 57889999999999987 57888999999777654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-32  Score=306.33  Aligned_cols=345  Identities=15%  Similarity=0.190  Sum_probs=266.5

Q ss_pred             eEEecCCCCce-EEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC
Q 001352          523 RVDYDAPGLGC-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH  601 (1093)
Q Consensus       523 ~~~~~~~~~~v-~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg  601 (1093)
                      +.++.+|...| +++  ++++++|++|+.    ++.|++||+.+++.+.++.+|.   +.|.+++|+|+ +++++++.||
T Consensus         5 ~~tL~GH~~~vitc~--~~~~~~l~tgs~----Dg~i~vWd~~~~~~~~~l~~H~---~~V~~l~~s~~-~~l~s~s~D~   74 (355)
T d1nexb2           5 RTTLRGHMTSVITCL--QFEDNYVITGAD----DKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHG-GILVSGSTDR   74 (355)
T ss_dssp             EEEEECCSSSCEEEE--EEETTEEEEEET----TTEEEEEETTTTEEEEEEECCS---SCEEEEEEETT-TEEEEEETTC
T ss_pred             cEEECCcCCCcEEEE--EECCCEEEEEeC----CCeEEEEECCCCcEEEEEECCC---CCEEEEEEcCC-CEEEEEeccc
Confidence            45677888775 444  557889999986    6789999999999999999988   89999999985 6899999999


Q ss_pred             cEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceee
Q 001352          602 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG  681 (1093)
Q Consensus       602 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  681 (1093)
                      +|++|+....+..................+++++.++++++.|+.|++|++.+.............              
T Consensus        75 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--------------  140 (355)
T d1nexb2          75 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY--------------  140 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CC--------------
T ss_pred             ccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecccccccee--------------
Confidence            999999999988877766554444556778899999999999999999998865433221110000              


Q ss_pred             eeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCc-eEEEeeccceeE
Q 001352          682 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHL  760 (1093)
Q Consensus       682 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~v~  760 (1093)
                                                                               ......+... .++....     
T Consensus       141 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~-----  158 (355)
T d1nexb2         141 ---------------------------------------------------------PLVFHTPEENPYFVGVLR-----  158 (355)
T ss_dssp             ---------------------------------------------------------CEEESCTTTCTTEEEEEE-----
T ss_pred             ---------------------------------------------------------ccceeccccccceeeeee-----
Confidence                                                                     0000000000 0000000     


Q ss_pred             EeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEE
Q 001352          761 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT  839 (1093)
Q Consensus       761 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~  839 (1093)
                                                              .|...+  ..+.+++.+++++. |+.+++||+.+++.+..
T Consensus       159 ----------------------------------------~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~  196 (355)
T d1nexb2         159 ----------------------------------------GHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI  196 (355)
T ss_dssp             ----------------------------------------CCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ----------------------------------------eccccc--cccccccceeeeecccceeeeeecccccceee
Confidence                                                    133333  34556788888887 79999999999999999


Q ss_pred             ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 001352          840 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW  919 (1093)
Q Consensus       840 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~  919 (1093)
                      ...+...+.++.|+| ++.++++++.||.|++||+.++..+..+.+|...|.+++|+  +++|++++.||.|++||+.+.
T Consensus       197 ~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         197 LSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDY  273 (355)
T ss_dssp             ECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTC
T ss_pred             eeccccccccccccc-cceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccc
Confidence            999999999999999 89999999999999999999999999999999999999997  469999999999999999885


Q ss_pred             ceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeC
Q 001352          920 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV  999 (1093)
Q Consensus       920 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~  999 (1093)
                      ....    ..   |..  ......++++++.+++++.|++|+|||+++|+++.....+|..+|.+++|+|+ .++++++.
T Consensus       274 ~~~~----~~---~~~--~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~  343 (355)
T d1nexb2         274 SRKF----SY---HHT--NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEK  343 (355)
T ss_dssp             CEEE----EE---ECT--TCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEES
T ss_pred             ceec----cc---ccC--CceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEEC
Confidence            4221    11   111  12333567889999999999999999999999987767889999999999987 47888999


Q ss_pred             CCcEEEEEc
Q 001352         1000 DGTLSIHEA 1008 (1093)
Q Consensus      1000 dg~v~vwd~ 1008 (1093)
                      ||.++||.+
T Consensus       344 dg~~~l~~~  352 (355)
T d1nexb2         344 DGQSFLEIL  352 (355)
T ss_dssp             SSCEEEEEE
T ss_pred             CCcEEEEEE
Confidence            999877654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.7e-33  Score=310.36  Aligned_cols=265  Identities=12%  Similarity=0.055  Sum_probs=209.9

Q ss_pred             CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352          334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  413 (1093)
Q Consensus       334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la  413 (1093)
                      +.++|+|++|||||+ +||+|+.||.|+|||+.+++.....                 .+.+|.++|.+++|+|++++|+
T Consensus         6 ~~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~~-----------------~l~gH~~~V~~l~fsp~~~~l~   67 (371)
T d1k8kc_           6 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-----------------ELKEHNGQVTGVDWAPDSNRIV   67 (371)
T ss_dssp             CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEEETTTTEEE
T ss_pred             CCCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEEE-----------------EecCCCCCEEEEEECCCCCEEE
Confidence            346899999999998 5899999999999999887654332                 1678999999999999999999


Q ss_pred             EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee----EEeecCCCCe
Q 001352          414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPV  489 (1093)
Q Consensus       414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~----~~~~~h~~~v  489 (1093)
                      +|+.|++|+|||+.++... ....+.+|...|++++|+|+++  .+++++.|++|++|++......    .....|...|
T Consensus        68 s~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v  144 (371)
T d1k8kc_          68 TCGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV  144 (371)
T ss_dssp             EEETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred             EEECCCeEEEEeecccccc-cccccccccccccccccccccc--cceeecccCcceeeeeeccccccccccccccccccc
Confidence            9999999999999876533 2335678999999999999999  8999999999999998776543    3345789999


Q ss_pred             EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeee
Q 001352          490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  569 (1093)
Q Consensus       490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~  569 (1093)
                      .+++|+|  ++.+|++|+.||.|++|+.............          +.+                  .+...+...
T Consensus       145 ~~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~----------~~~------------------~~~~~~~~~  194 (371)
T d1k8kc_         145 LSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPT----------PWG------------------SKMPFGELM  194 (371)
T ss_dssp             EEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCB----------TTB------------------SCCCTTCEE
T ss_pred             ccccccc--cccceeccccCcEEEEEeeccCccccccccc----------ccc------------------ccccceeee
Confidence            9999965  6789999999999999998654322111000          000                  011223444


Q ss_pred             eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001352          570 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  649 (1093)
Q Consensus       570 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  649 (1093)
                      ....+|.   ..|.+++|+|+++++++++.|+.|++||+.+++.+..+..+.  .+|.+++|+|+++++++|. |+.+++
T Consensus       195 ~~~~~~~---~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~s~~fs~d~~~la~g~-d~~~~~  268 (371)
T d1k8kc_         195 FESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET--LPLLAVTFITESSLVAAGH-DCFPVL  268 (371)
T ss_dssp             EECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEET-TSSCEE
T ss_pred             eeccCcc---CcEEEEEeecccccccccccCCcceEEeeecccceeeeeccc--ccceeeeecCCCCEEEEEc-CCceEE
Confidence            4455555   789999999999999999999999999999999999888664  4689999999998877654 677777


Q ss_pred             EEcCCC
Q 001352          650 LETPES  655 (1093)
Q Consensus       650 w~~~~~  655 (1093)
                      |.....
T Consensus       269 ~~~~~~  274 (371)
T d1k8kc_         269 FTYDSA  274 (371)
T ss_dssp             EEEETT
T ss_pred             EEeeCC
Confidence            665543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.1e-32  Score=298.19  Aligned_cols=286  Identities=14%  Similarity=0.183  Sum_probs=257.3

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      +.||.++|++++|+|++++||+|+.||+|+|||+.+++.+.   .+.+|..+|.+++|+|++.  ++++|+.|+.+++|+
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN  125 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEE
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeeccc
Confidence            88999999999999999999999999999999999986554   6788999999999999999  899999999999999


Q ss_pred             CCCC----ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001352          473 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  548 (1093)
Q Consensus       473 ~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~  548 (1093)
                      ....    .....+.+|...........   +..+.....+.....+.................+....+.+.+.+++++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccceeccccccccccccccc---ccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence            7654    34556777887776665432   3478889999999999988887777888888899999999999999998


Q ss_pred             ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352          549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  628 (1093)
Q Consensus       549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  628 (1093)
                      ..    ++.|++||+.+++.+..+.+|.   ..|.+++|+|+++++++|+.||.|++||+........+........+.+
T Consensus       203 ~~----d~~v~i~d~~~~~~~~~~~~h~---~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~  275 (340)
T d1tbga_         203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             ET----TTEEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             ec----CceEEEEECCCCcEEEEEeCCC---CCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence            76    6779999999999999999887   8999999999999999999999999999999999888876666677899


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352          629 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  708 (1093)
Q Consensus       629 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  708 (1093)
                      ++|+|++++|++|+.||.|++||+.+++.+..+.+|...|++++|+                      |+++++++++.|
T Consensus       276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s----------------------~d~~~l~s~s~D  333 (340)
T d1tbga_         276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD  333 (340)
T ss_dssp             EEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred             EEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEe----------------------CCCCEEEEEccC
Confidence            9999999999999999999999999999999999999999999986                      788899999999


Q ss_pred             ccceecc
Q 001352          709 NKSEVEK  715 (1093)
Q Consensus       709 ~~i~~w~  715 (1093)
                      |+|++||
T Consensus       334 g~v~iWd  340 (340)
T d1tbga_         334 SFLKIWN  340 (340)
T ss_dssp             SCEEEEC
T ss_pred             CEEEEeC
Confidence            9999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-32  Score=297.79  Aligned_cols=285  Identities=11%  Similarity=0.109  Sum_probs=241.9

Q ss_pred             CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC
Q 001352          395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  474 (1093)
Q Consensus       395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  474 (1093)
                      .+.+.+..++++|+|+.||.+. ++.|.+||+.+++...   .+.+|.+.|++++|+|+|+  +|++|+.||+|+|||+.
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~---~~~~H~~~v~~~~~sp~g~--~latg~~dg~i~iwd~~   88 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDTT   88 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEESS
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeE---EEcCCCCCEEEEEEeCCCC--eEeccccCceEeeeeee
Confidence            4556778899999999999985 5569999999876555   5789999999999999999  89999999999999999


Q ss_pred             CCcee--EEeecCCCCeEEeeecccCCccEEEEEec--CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCE-EEEEe
Q 001352          475 TGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR-LFSCG  549 (1093)
Q Consensus       475 ~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~  549 (1093)
                      ++...  ..+.+|..+|.+++|++  ++.++++++.  ++.+++|++++.+....+..|...|.+++|+|++++ +++++
T Consensus        89 ~~~~~~~~~~~~~~~~v~~v~~s~--d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs  166 (311)
T d1nr0a1          89 QTTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS  166 (311)
T ss_dssp             STTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEE
T ss_pred             ccccccccccccccCccccccccc--cccccccccccccccccccccccccccccccccccccccccccccceeeecccc
Confidence            88754  56788999999999955  6678888876  456999999999888888889999999999999986 56666


Q ss_pred             cCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-----CCCC
Q 001352          550 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLP  624 (1093)
Q Consensus       550 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~  624 (1093)
                      .    ++.|++||.++++....+..|.   ..|.++.|+|+++++++++.||.|++||..++.....+...     ++..
T Consensus       167 ~----d~~i~i~d~~~~~~~~~~~~~~---~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~  239 (311)
T d1nr0a1         167 D----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG  239 (311)
T ss_dssp             T----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS
T ss_pred             c----cccccccccccccccccccccc---ccccccccCccccccccccccccccccccccccccccccccccccccccc
Confidence            4    6679999999999999988887   89999999999999999999999999999999888777533     2345


Q ss_pred             CCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeeccccccc-ceeeeecCCCceeeeeccCCceEecCCCCCCCccce
Q 001352          625 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI  703 (1093)
Q Consensus       625 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~  703 (1093)
                      .|.+++|+|++++|++++.||.|+|||+.+++.+..+..+... ...+.+.                      +++..++
T Consensus       240 ~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~----------------------~~~~~l~  297 (311)
T d1nr0a1         240 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII----------------------WTKQALV  297 (311)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE----------------------ECSSCEE
T ss_pred             cccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEE----------------------ecCCEEE
Confidence            6899999999999999999999999999999888877655432 1122221                      3466799


Q ss_pred             eecccccceecce
Q 001352          704 SVEAENKSEVEKP  716 (1093)
Q Consensus       704 s~~~d~~i~~w~~  716 (1093)
                      +++.||.|++||.
T Consensus       298 s~s~dG~i~~wd~  310 (311)
T d1nr0a1         298 SISANGFINFVNP  310 (311)
T ss_dssp             EEETTCCEEEEET
T ss_pred             EEECCCEEEEEeC
Confidence            9999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-30  Score=287.12  Aligned_cols=327  Identities=16%  Similarity=0.230  Sum_probs=259.8

Q ss_pred             HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      ++|+||++.|.+ +++++|++ ||||+.||+|+|||+.+++++..                   +.+|.+.|.+++|+|+
T Consensus        10 ~~l~GH~~~V~s-~~~~~g~~-l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v~~~~~   68 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMRDN   68 (342)
T ss_dssp             EEEECSTTSCEE-EEEEETTE-EEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEETT
T ss_pred             EEECCcCCceEE-EEEECCCE-EEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCCEEEEEeCCC
Confidence            568999999975 47778884 89999999999999999998875                   7789999999999875


Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  488 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  488 (1093)
                        +|++|+.|+++++|+........   ....+...+....+.+  .  .++.+..|+.+.+|+..+++....+..+...
T Consensus        69 --~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  139 (342)
T d2ovrb2          69 --IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGHVAA  139 (342)
T ss_dssp             --EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred             --ccccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeeeccccc
Confidence              99999999999999998765332   3445666666665554  3  5788899999999999999988887766555


Q ss_pred             eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001352          489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  568 (1093)
Q Consensus       489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~  568 (1093)
                      ......    ....+++++.|+.|++||.........+..+...+.  .+++++.++++++.    ++.|++||+.+++.
T Consensus       140 ~~~~~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~----dg~i~~~d~~~~~~  209 (342)
T d2ovrb2         140 VRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQFDGIHVVSGSL----DTSIRVWDVETGNC  209 (342)
T ss_dssp             EEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE--EEEECSSEEEEEET----TSCEEEEETTTCCE
T ss_pred             ceeecc----ccceeeeecCCCeEEEeecccceeeEEEcCcccccc--cccCCCCEEEEEeC----CCeEEEeeccccee
Confidence            444332    335789999999999999998888888877766554  45567899999986    66799999999999


Q ss_pred             eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352          569 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  648 (1093)
Q Consensus       569 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  648 (1093)
                      +..+.+|.   ..+.++.+++  +++++++.||.|++||....+....+..+.. ......++.++++++++++.||.|+
T Consensus       210 ~~~~~~~~---~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~s~Dg~i~  283 (342)
T d2ovrb2         210 IHTLTGHQ---SLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFNKNFVITSSDDGTVK  283 (342)
T ss_dssp             EEEECCCC---SCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTS-CSSCEEEEEECSSEEEEEETTSEEE
T ss_pred             eeEecccc---cceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccce-eeeceeecccCCCeeEEEcCCCEEE
Confidence            99998887   7788877764  6999999999999999999988887765432 1233445556678999999999999


Q ss_pred             EEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccc
Q 001352          649 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL  728 (1093)
Q Consensus       649 iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~  728 (1093)
                      +||+.+++.+..+...                                                                
T Consensus       284 iwd~~tg~~i~~~~~~----------------------------------------------------------------  299 (342)
T d2ovrb2         284 LWDLKTGEFIRNLVTL----------------------------------------------------------------  299 (342)
T ss_dssp             EEETTTCCEEEEEEEC----------------------------------------------------------------
T ss_pred             EEECCCCCEEEEEecc----------------------------------------------------------------
Confidence            9999988766544211                                                                


Q ss_pred             cCccccccceEEEEeecCCceEEEeeccce----eEEeeecC
Q 001352          729 LPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR  766 (1093)
Q Consensus       729 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~----v~vw~~~~  766 (1093)
                       ...+|...|.+++|+|++..+++++.||+    +++||++.
T Consensus       300 -~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         300 -ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             -TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             -cCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence             01126677899999999998888888875    78888753

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.6e-31  Score=286.17  Aligned_cols=293  Identities=13%  Similarity=0.146  Sum_probs=227.2

Q ss_pred             CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352          566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  645 (1093)
Q Consensus       566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  645 (1093)
                      |+..+.+.||.   ..|.+++|+|++++|++|+.||+|++||+.+++....+.. .+...|.+++|+|++++ ++++.|+
T Consensus         2 g~~~~~~~GH~---~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~h~~~v~~v~~~~~g~~-~~~~~d~   76 (299)
T d1nr0a2           2 GSIDQVRYGHN---KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD-VHATMITGIKTTSKGDL-FTVSWDD   76 (299)
T ss_dssp             TEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC-SCSSCEEEEEECTTSCE-EEEETTT
T ss_pred             CccceEcCCCC---CCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC-CCCCcEEEEEeecccee-eccccee
Confidence            56778899998   9999999999999999999999999999999998877643 23456899999999875 4566788


Q ss_pred             eEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcccc
Q 001352          646 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  725 (1093)
Q Consensus       646 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~  725 (1093)
                      .+++|+........ ..                                                               
T Consensus        77 ~v~~~~~~~~~~~~-~~---------------------------------------------------------------   92 (299)
T d1nr0a2          77 HLKVVPAGGSGVDS-SK---------------------------------------------------------------   92 (299)
T ss_dssp             EEEEECSSSSSSCT-TS---------------------------------------------------------------
T ss_pred             eEEEeccCCccccc-cc---------------------------------------------------------------
Confidence            99999865321000 00                                                               


Q ss_pred             ccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCC
Q 001352          726 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA  805 (1093)
Q Consensus       726 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  805 (1093)
                                 .+                                                     ..       .+...
T Consensus        93 -----------~~-----------------------------------------------------~~-------~~~~~  101 (299)
T d1nr0a2          93 -----------AV-----------------------------------------------------AN-------KLSSQ  101 (299)
T ss_dssp             -----------CC-----------------------------------------------------EE-------ECSSC
T ss_pred             -----------cc-----------------------------------------------------cc-------ccccc
Confidence                       00                                                     00       14455


Q ss_pred             eeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceee-ecc
Q 001352          806 VPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLE  884 (1093)
Q Consensus       806 v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~-~l~  884 (1093)
                      +.++++++++++++++.++.+.+|+...  .....  ....+.+++|+| ++++|++|+.||.|++||+.+++... ...
T Consensus       102 ~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~  176 (299)
T d1nr0a2         102 PLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTI  176 (299)
T ss_dssp             EEEEEECTTSSCEEEEESSEEEEEETTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEE
T ss_pred             cccccccccccccccccccccccccccc--ccccc--cccccccccccc-cccccccccccccccccccccccccccccc
Confidence            6778888999988888888999998543  22222  345678999999 89999999999999999999876543 345


Q ss_pred             cccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEE
Q 001352          885 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIY  963 (1093)
Q Consensus       885 ~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vw  963 (1093)
                      .|...|++++|+|++++|++++.|+.|++||+.++....  ......+|..   .|.+++|+|++++|++ +.|+.|++|
T Consensus       177 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~--~~~~~~~h~~---~v~~l~~s~~~~~l~sgs~dg~i~iw  251 (299)
T d1nr0a2         177 VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA--HTNSWTFHTA---KVACVSWSPDNVRLATGSLDNSVIVW  251 (299)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES--CCCCCCCCSS---CEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccc--cccccccccc---ccccccccccccceEEEcCCCEEEEE
Confidence            699999999999999999999999999999998754322  2333444443   7999999999999999 578999999


Q ss_pred             EcCCcceeeee-ecCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001352          964 EAEELTCLKQW-FPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus       964 d~~~~~~~~~~-~~~h-~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
                      |+.++...... ...| ...+..+ +++++++|++++.||+|++||++
T Consensus       252 d~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         252 NMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             ETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEEEECC
T ss_pred             ECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEEEecc
Confidence            99987654332 2233 4566666 45677899999999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-30  Score=288.27  Aligned_cols=320  Identities=20%  Similarity=0.292  Sum_probs=249.0

Q ss_pred             ceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEE
Q 001352          434 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK  513 (1093)
Q Consensus       434 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~  513 (1093)
                      ....++||.+.|.+ +++++|+  +|+||+.||+|+|||+.++++++++.+|...|.+++|++    .+|++++.|+.++
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~   80 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLK   80 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred             cCEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccc
Confidence            34478899999865 4666788  899999999999999999999999999999999999953    3899999999999


Q ss_pred             EEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCE
Q 001352          514 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ  593 (1093)
Q Consensus       514 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~  593 (1093)
                      +|+................+......  ...++.+..    +..+.+|+..+++....+....   ..  .....+....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----d~~i~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~  149 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHV---AA--VRCVQYDGRR  149 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCS---SC--EEEEEECSSC
T ss_pred             ccccccccceecccccceeEeeeecc--ccccccccc----ceeEEEeecccccceeeeeccc---cc--ceeeccccce
Confidence            99998877776666666666555443  345555544    6679999999998877766544   22  2334455678


Q ss_pred             EEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeee
Q 001352          594 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV  673 (1093)
Q Consensus       594 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~  673 (1093)
                      +++++.|+.+++||....+.+..+..+.    .....+++++.++++++.||.|++|++...+.+....           
T Consensus       150 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~-----------  214 (342)
T d2ovrb2         150 VVSGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT-----------  214 (342)
T ss_dssp             EEEEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC-----------
T ss_pred             eeeecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccceeeeEec-----------
Confidence            8999999999999999988888877553    3556677788999999999999999987553332211           


Q ss_pred             cCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEe
Q 001352          674 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL  753 (1093)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~  753 (1093)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (342)
T d2ovrb2         215 --------------------------------------------------------------------------------  214 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcc
Q 001352          754 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM  832 (1093)
Q Consensus       754 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~  832 (1093)
                                                                     +|...+.+++++  ++++++++ |+.|++||+.
T Consensus       215 -----------------------------------------------~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~  245 (342)
T d2ovrb2         215 -----------------------------------------------GHQSLTSGMELK--DNILVSGNADSTVKIWDIK  245 (342)
T ss_dssp             -----------------------------------------------CCCSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             -----------------------------------------------ccccceeEEecC--CCEEEEEcCCCEEEEEecc
Confidence                                                           134444444443  45677776 6888888888


Q ss_pred             CceeEEEECC---CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecc-----cccCCeEEEEEeCCCCEEEE
Q 001352          833 TFKTILTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSKRVTGLVFSDALNILVS  904 (1093)
Q Consensus       833 ~~~~~~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~-----~h~~~V~~l~~s~dg~~l~s  904 (1093)
                      ..+....+..   |...+.++.+++   +++++|+.||+|++||+.+++.+..+.     +|.+.|++++|+|++.+||+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~  322 (342)
T d2ovrb2         246 TGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV  322 (342)
T ss_dssp             TCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred             cccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEE
Confidence            7777777664   445666776654   699999999999999999999887763     58889999999999999999


Q ss_pred             EeCCCc----EEEEeCCC
Q 001352          905 SGGDAQ----IFVWDVDG  918 (1093)
Q Consensus       905 ~s~dg~----i~iwd~~~  918 (1093)
                      |+.||+    |++||++.
T Consensus       323 g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         323 GSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ECSSSSSCCEEEEEECCC
T ss_pred             EeCCCCCeeEEEEEeCCC
Confidence            999986    99999975

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.9e-31  Score=294.48  Aligned_cols=304  Identities=13%  Similarity=0.135  Sum_probs=236.3

Q ss_pred             CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001352          530 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD  607 (1093)
Q Consensus       530 ~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd  607 (1093)
                      ..+|++++|+|||++|++++.    ++.|++||..+++  .+..+.+|.   ++|.+++|+|++++|++++.|++|+|||
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~----~~~i~iw~~~~~~~~~~~~l~gH~---~~V~~l~fsp~~~~l~s~s~D~~i~vWd   79 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAYVWT   79 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeC----CCEEEEEECCCCCEEEEEEecCCC---CCEEEEEECCCCCEEEEEECCCeEEEEe
Confidence            357999999999999999875    6679999998775  566777877   8999999999999999999999999999


Q ss_pred             CCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCC
Q 001352          608 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  687 (1093)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  687 (1093)
                      +.++.....+....+...+.+++|+|+++.+++++.|+.+++|+............                        
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~------------------------  135 (371)
T d1k8kc_          80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH------------------------  135 (371)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE------------------------
T ss_pred             ecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccc------------------------
Confidence            99888776666555566799999999999999999999999998775422211100                        


Q ss_pred             ceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCc
Q 001352          688 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN  767 (1093)
Q Consensus       688 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~  767 (1093)
                                                                ....|...|.+++|+|++++|++++.||.+++|+....
T Consensus       136 ------------------------------------------~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~  173 (371)
T d1k8kc_         136 ------------------------------------------IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  173 (371)
T ss_dssp             ------------------------------------------ECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             ------------------------------------------cccccccccccccccccccceeccccCcEEEEEeeccC
Confidence                                                      00125667899999999999999999999999997654


Q ss_pred             ccCcCcccccccCCcccCCC--CCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCC
Q 001352          768 DLTLSTEATTKVPPRLYQPR--HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS  844 (1093)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~  844 (1093)
                      .....      .....|+..  .+..+..  .  .+|...|.+++|+|+|++|++++ |+.|++||+.+++.+..+..|.
T Consensus       174 ~~~~~------~~~~~~~~~~~~~~~~~~--~--~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  243 (371)
T d1k8kc_         174 EVEER------PAPTPWGSKMPFGELMFE--S--SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET  243 (371)
T ss_dssp             TTSCC------CCCBTTBSCCCTTCEEEE--C--CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred             ccccc------cccccccccccceeeeee--c--cCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccc
Confidence            32111      112222222  2222222  2  24889999999999999999998 7999999999999999999999


Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc--cee---------------------------------------eec
Q 001352          845 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVI---------------------------------------SKL  883 (1093)
Q Consensus       845 ~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~--~~~---------------------------------------~~l  883 (1093)
                      .+|.+++|+| ++++|++|. |+.+++|.....  ...                                       ...
T Consensus       244 ~~v~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (371)
T d1k8kc_         244 LPLLAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD  321 (371)
T ss_dssp             CCEEEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred             ccceeeeecC-CCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceec
Confidence            9999999999 888888665 676666654321  110                                       000


Q ss_pred             ccccCCeEEEEEeCCC----CEEEEEeCCCcEEEEeCCC
Q 001352          884 EGHSKRVTGLVFSDAL----NILVSSGGDAQIFVWDVDG  918 (1093)
Q Consensus       884 ~~h~~~V~~l~~s~dg----~~l~s~s~dg~i~iwd~~~  918 (1093)
                      ..|.+.|+++++++.+    ..++|+|.||.|+|||+++
T Consensus       322 ~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence            1388899999998855    3589999999999999976

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.2e-30  Score=283.01  Aligned_cols=290  Identities=12%  Similarity=0.175  Sum_probs=225.6

Q ss_pred             CceeeeecCCCceEEEEEcc-CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCC-CCCeEEEEECC--CCCEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSP--DGSLL  412 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~s~--dg~~l  412 (1093)
                      .+++++|+|+|+. +|.++. ...|+.||.........                 ..+.+| ...|++++|+|  +|++|
T Consensus        19 ~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~gh~~~~v~~v~fsP~~~g~~l   80 (325)
T d1pgua1          19 FTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPPV-----------------VQFTGHGSSVVTTVKFSPIKGSQYL   80 (325)
T ss_dssp             CCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCSE-----------------EEECTTTTSCEEEEEECSSTTCCEE
T ss_pred             CeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccce-----------------EEEeCCCCCCEEEEEEeeCCCCCEE
Confidence            5789999999996 555543 33456666544332211                 115566 56899999998  67899


Q ss_pred             EEEEcCCEEEEEEccCCCcccce-----EEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC
Q 001352          413 GVAYSKHIVQLYAYHGGSDARQQ-----LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  487 (1093)
Q Consensus       413 as~~~d~~i~iwd~~~~~~~~~~-----~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~  487 (1093)
                      |+|+.||+|+|||+..++.....     ..+..|.++|.+++|+++++.+..++++.++.+++|++.+++++..+.+|..
T Consensus        81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  160 (325)
T d1pgua1          81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ  160 (325)
T ss_dssp             EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred             EEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc
Confidence            99999999999999876654322     1345688999999999999953333445678899999999999999999999


Q ss_pred             CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEEEccC-CCEEEEEecCCCCceeEEEEeC
Q 001352          488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNE  563 (1093)
Q Consensus       488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~  563 (1093)
                      .|.+++|++..+ .++++++.||.+++||....+......   .+...|.+++|+|+ +.++++++.    ++.|++||.
T Consensus       161 ~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iwd~  235 (325)
T d1pgua1         161 RINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFDG  235 (325)
T ss_dssp             CEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEET
T ss_pred             cccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceeeeee
Confidence            999999976532 467889999999999998776655543   34567999999997 578888876    667999999


Q ss_pred             CCCeeeeeeecccccCCCeEEEEEc---CCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC-CCEEE
Q 001352          564 SEGAIKRTYQGLQLQHNSVSVVHFD---TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-GTLLA  639 (1093)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~v~~v~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~  639 (1093)
                      ++++.+..+.+|.   ..+..+.|+   |++++|++++.|+.|+|||+++++++..+..+.+...+..+++.+. +.+|+
T Consensus       236 ~~~~~~~~l~~~~---~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (325)
T d1pgua1         236 KSGEFLKYIEDDQ---EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII  312 (325)
T ss_dssp             TTCCEEEECCBTT---BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred             ccccccccccccc---cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEE
Confidence            9999999998877   444444443   6789999999999999999999999999887766544555555543 34789


Q ss_pred             EEECCCeEEEEEc
Q 001352          640 VIANENRIKILET  652 (1093)
Q Consensus       640 ~~~~dg~i~iw~~  652 (1093)
                      +++.||.|++||+
T Consensus       313 s~s~dg~i~vwdl  325 (325)
T d1pgua1         313 SLSLDGTLNFYEL  325 (325)
T ss_dssp             EEETTSCEEEEET
T ss_pred             EEECCCEEEEEEC
Confidence            9999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.3e-29  Score=271.91  Aligned_cols=286  Identities=13%  Similarity=0.137  Sum_probs=218.4

Q ss_pred             ceEEEEeecCCceEEEeeccc-eeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCC-CCCeeEEEEcc-
Q 001352          737 KISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS-QEAVPCFALSK-  813 (1093)
Q Consensus       737 ~i~~l~~s~~g~~l~~~~~dg-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~s~-  813 (1093)
                      .+.+++|+|+|..++.++.+. .++.|+.....                    ......  +.  +| ...|++++|+| 
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~--------------------~~~~~~--~~--gh~~~~v~~v~fsP~   74 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK--------------------VPPVVQ--FT--GHGSSVVTTVKFSPI   74 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCS--------------------SCSEEE--EC--TTTTSCEEEEEECSS
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC--------------------ccceEE--Ee--CCCCCCEEEEEEeeC
Confidence            456789999999988876553 34444422111                    011111  11  24 56899999998 


Q ss_pred             -CCCEEEEEe-CCeEEEEEccCcee--------EEEECCCCCCeEEEEEcCCCCCEEEEEeC--CCeEEEEEcCCcceee
Q 001352          814 -NDAYLFSAS-GGVISLYIVMTFKT--------ILTIMPPSPTATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVIS  881 (1093)
Q Consensus       814 -dg~~la~~~-dg~i~iwd~~~~~~--------~~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg~i~iwd~~~~~~~~  881 (1093)
                       +|++||+++ ||+|+|||+..++.        ...+..|.++|.+++|++ ++++|++++.  ++.+.+|+..+++.+.
T Consensus        75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~  153 (325)
T d1pgua1          75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG  153 (325)
T ss_dssp             TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred             CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccce
Confidence             678999998 79999999875432        233557889999999999 8888887764  6789999999999999


Q ss_pred             ecccccCCeEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccC-CCEEEE-EeCC
Q 001352          882 KLEGHSKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHET  958 (1093)
Q Consensus       882 ~l~~h~~~V~~l~~s~dg~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~-~~d~  958 (1093)
                      .+.+|...|.+++|+|++.+ +++++.|+.|++||+...+...  ......++.   ..|.+++|+|| +.++++ +.|+
T Consensus       154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d~  228 (325)
T d1pgua1         154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQG---SFVRDVEFSPDSGEFVITVGSDR  228 (325)
T ss_dssp             ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTT---CCEEEEEECSTTCCEEEEEETTC
T ss_pred             eeeecccccccccccccccceEEEeecccccccccccccccce--ecccccCCC---CccEEeeeccccceecccccccc
Confidence            99999999999999999875 7789999999999998755332  233333333   37999999997 577777 5789


Q ss_pred             eEEEEEcCCcceeeeeecCCCCCEEEEEEc---cCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCcccee
Q 001352          959 HLAIYEAEELTCLKQWFPISSVPISQATFS---CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1035 (1093)
Q Consensus       959 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs---~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1035 (1093)
                      .|++||+.+++.+..+ .+|..++..+.|+   +||++|++++.|+.|+|||+.+++.+..+....      +...+..+
T Consensus       229 ~i~iwd~~~~~~~~~l-~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~  301 (325)
T d1pgua1         229 KISCFDGKSGEFLKYI-EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK------QQLGNQQV  301 (325)
T ss_dssp             CEEEEETTTCCEEEEC-CBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCT------TCGGGCEE
T ss_pred             ceeeeeeccccccccc-cccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecC------CcccCeEE
Confidence            9999999999988874 4677777666666   789999999999999999999999987776222      12223445


Q ss_pred             EEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352         1036 AIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus      1036 ~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
                      ++.+.+  +.+|++|+.||.|++||+
T Consensus       302 ~~~~~~--~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         302 GVVATG--NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             EEEECC--CCEEEEEECCCEEEEEEC
Confidence            566654  468999999999999996

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=3.3e-27  Score=267.04  Aligned_cols=368  Identities=11%  Similarity=0.043  Sum_probs=264.1

Q ss_pred             eEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccC
Q 001352          349 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG  428 (1093)
Q Consensus       349 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~  428 (1093)
                      .++++.+.||+|.|||..+++++..                   +..| ..+..++|||||+++++++.|++|.+||+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t   92 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM   92 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence            4568899999999999999999976                   3334 4699999999999999999999999999998


Q ss_pred             CCccc--ceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEE
Q 001352          429 GSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI  506 (1093)
Q Consensus       429 ~~~~~--~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~  506 (1093)
                      ++...  .+....+|.+.+.+.+|+|||++ ++++++.+++|++||..+++++..+..|...+....+.+.         
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~---------  162 (432)
T d1qksa2          93 KEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE---------  162 (432)
T ss_dssp             SSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC---------
T ss_pred             CCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC---------
Confidence            76432  22223467778888899999995 4578889999999999999999998877765554444322         


Q ss_pred             ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEE
Q 001352          507 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH  586 (1093)
Q Consensus       507 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~  586 (1093)
                                              .....+.++|+|..++....   .++.|.+||..+++.........  ...+..++
T Consensus       163 ------------------------~~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~--g~~~~~~~  213 (432)
T d1qksa2         163 ------------------------PRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISA--ERFLHDGG  213 (432)
T ss_dssp             ------------------------CCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEEC--CSSEEEEE
T ss_pred             ------------------------CceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcc--cCccccce
Confidence                                    23345778899988776653   25679999998877655444322  25688999


Q ss_pred             EcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCC---CCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCceeeec
Q 001352          587 FDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGG---LPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAA  661 (1093)
Q Consensus       587 ~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~  661 (1093)
                      |+|+|+++++++ .++.+.++|..+++....+.....   ........+...+...+... .++.+.+|.......    
T Consensus       214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~----  289 (432)
T d1qksa2         214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH----  289 (432)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC----
T ss_pred             ECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccc----
Confidence            999999888866 556889999999988887764321   11222333333333333332 255666665442210    


Q ss_pred             ccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEE
Q 001352          662 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL  741 (1093)
Q Consensus       662 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l  741 (1093)
                                                                                            ..+...+...
T Consensus       290 ----------------------------------------------------------------------~~~~~~v~~~  299 (432)
T d1qksa2         290 ----------------------------------------------------------------------PDNAWKILDS  299 (432)
T ss_dssp             ----------------------------------------------------------------------TTTBTSEEEE
T ss_pred             ----------------------------------------------------------------------cccccEEEEE
Confidence                                                                                  0134456777


Q ss_pred             EeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE
Q 001352          742 TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA  821 (1093)
Q Consensus       742 ~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~  821 (1093)
                      .+++++..+++++.++..++|......                                .|......+++ ||++.++++
T Consensus       300 ~~~~~g~~~~~~s~p~~~~lw~~~~~~--------------------------------~~~~~~~sv~v-pDg~~la~~  346 (432)
T d1qksa2         300 FPALGGGSLFIKTHPNSQYLYVDATLN--------------------------------PEAEISGSVAV-FDIKAMTGD  346 (432)
T ss_dssp             EECSCSCCCCEECCTTCSEEEEECTTC--------------------------------SSHHHHTCEEE-EEGGGCCCS
T ss_pred             EEcCCCCeEEEEecCCccceeecccCC--------------------------------CCCCeeeEEEE-Eechhhccc
Confidence            888888888888888888888643210                                12223334555 899999999


Q ss_pred             e-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEe-----CCCeEEEEEcCCcceeeecccc
Q 001352          822 S-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-----DDSTILIYNARSSEVISKLEGH  886 (1093)
Q Consensus       822 ~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~-----~dg~i~iwd~~~~~~~~~l~~h  886 (1093)
                      + |+.+++|++.++..+   ..|...+.+++||| ||++|+++.     .+|.|.|||..++++...+++.
T Consensus       347 s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         347 GSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             SSCCCEEEECHHHHHTC---CSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             ccCCceEeccccccccc---CCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence            8 689999998766332   35777899999999 888776553     4689999999999988877753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.6e-27  Score=251.18  Aligned_cols=267  Identities=10%  Similarity=0.129  Sum_probs=211.4

Q ss_pred             HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      +++|.||.++|++++|+|     |++|+.||+|++||+.++                        ..+|...|.+++|++
T Consensus         6 i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~------------------------~~~h~~~V~~~~~~~   56 (287)
T d1pgua2           6 LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM------------------------HQDHSNLIVSLDNSK   56 (287)
T ss_dssp             EEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE------------------------ECCCCSCEEEEECCS
T ss_pred             eEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC------------------------CCCCCCCEEEEEecC
Confidence            467999999999999987     799999999999998764                        346999999999997


Q ss_pred             CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC
Q 001352          408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  487 (1093)
Q Consensus       408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~  487 (1093)
                      ++ .+++++.|++|++|++...+          ....+.++++++++.  .++++ .++.+.+|+..+++.+..+..+ .
T Consensus        57 ~~-~~~s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~  121 (287)
T d1pgua2          57 AQ-EYSSISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TAVLT-NDDDLLILQSFTGDIIKSVRLN-S  121 (287)
T ss_dssp             TT-CCEEEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EEEEE-TTSEEEEEETTTCCEEEEEECS-S
T ss_pred             CC-eEEEEeeccccccccccccc----------cccceeeeeeccCCc--eEEEe-ecccceeeeccceeeeeecccc-c
Confidence            65 57889999999999986531          234577889999887  45554 4667999999999998888643 4


Q ss_pred             CeEEeeecccCCccEEEEEecC-CeEEEEEcCCCCceEEecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352          488 PVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  565 (1093)
Q Consensus       488 ~v~~~~~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~  565 (1093)
                      .+.++..    ++..+++++.+ +.+++|++........... +...+.+++|+|++.+|++++.    ++.|++||+.+
T Consensus       122 ~~~~~~~----~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~~~  193 (287)
T d1pgua2         122 PGSAVSL----SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYDLQS  193 (287)
T ss_dssp             CEEEEEE----CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTT
T ss_pred             eeeeeec----cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----cccccceeecc
Confidence            4544433    34566666666 5799999876655555443 5668999999999999999986    56699999999


Q ss_pred             Ceeeee-eecccccCCCeEEEEEcCC----------CCEEEEEeCCCcEEEEECCC-CceEEEEecCCCCCCCceEEEec
Q 001352          566 GAIKRT-YQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNK  633 (1093)
Q Consensus       566 ~~~~~~-~~~~~~~~~~v~~v~~~~~----------~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~  633 (1093)
                      +..... +.+|.   ..|.+++|+|.          +.++++|+.|++|++||+++ ++.+..+..|  ...|.+++|+|
T Consensus       194 ~~~~~~~~~~h~---~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h--~~~V~~v~~~~  268 (287)
T d1pgua2         194 REVKTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH--KDGVNNLLWET  268 (287)
T ss_dssp             TEEEECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS--TTCEEEEEEEE
T ss_pred             cccccccccccc---cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC--CCCeEEEEECC
Confidence            886543 55555   88999999875          46899999999999999977 4455555544  45699999999


Q ss_pred             CCCEEEEEECCCeEEEEEc
Q 001352          634 NGTLLAVIANENRIKILET  652 (1093)
Q Consensus       634 ~~~~l~~~~~dg~i~iw~~  652 (1093)
                      ++ .+++++.|+.|++|++
T Consensus       269 ~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         269 PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TT-EEEEEETTSCEEEEEE
T ss_pred             CC-EEEEEECCCeEEEEEE
Confidence            86 5889999999999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.8e-26  Score=241.65  Aligned_cols=271  Identities=20%  Similarity=0.285  Sum_probs=217.6

Q ss_pred             hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352          331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  410 (1093)
Q Consensus       331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~  410 (1093)
                      +.+|+..|+|++|  ||+ +||+|+.||+|+|||+.+++++..                   +.+|.+.|.+++|  +++
T Consensus        11 ~~~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--~~~   66 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DER   66 (293)
T ss_dssp             CCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSS
T ss_pred             cCCCCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EecCCCCEeeeec--ccc
Confidence            4568889998765  787 599999999999999999998876                   7789999999987  678


Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce---eEEeecCCC
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGA  487 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~h~~  487 (1093)
                      +|++|+.|+.|++|++..+....   ....+...  ...+.+...  .++++..++.+++||..+...   ...+..|..
T Consensus        67 ~l~s~s~D~~i~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (293)
T d1p22a2          67 VIITGSSDSTVRVWDVNTGEMLN---TLIHHCEA--VLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA  139 (293)
T ss_dssp             EEEEEETTSCEEEEESSSCCEEE---EECCCCSC--EEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSS
T ss_pred             eeecccccccccccccccccccc---cccccccc--ccccccccc--ceeecccccceeEeecccccccccccccccccc
Confidence            99999999999999999886443   23333332  334444555  689999999999999887654   345567888


Q ss_pred             CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352          488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  567 (1093)
Q Consensus       488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~  567 (1093)
                      .+..+.+.    ...+++++.|+.|++||+++.+....+..+...+..+.++  +..+++++.    ++.|++||+.++.
T Consensus       140 ~v~~~~~~----~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~~~~  209 (293)
T d1p22a2         140 AVNVVDFD----DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGA  209 (293)
T ss_dssp             CEEEEEEE----TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETTTCC
T ss_pred             ccccceec----ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecccce
Confidence            88877663    2478899999999999999999988888888888777664  568888876    6679999999999


Q ss_pred             eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CceEEEEecCCCCCCCceEEEecCCCEE
Q 001352          568 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---------VQLLTTIDAGGGLPENPRICFNKNGTLL  638 (1093)
Q Consensus       568 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~v~~s~~~~~l  638 (1093)
                      .+..+.++.   ..+..  +++++.++++++.||.|++||+.+         ...+..+..|  ...|.+++|+  +++|
T Consensus       210 ~~~~~~~~~---~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H--~~~V~~v~~d--~~~l  280 (293)
T d1p22a2         210 CLRVLEGHE---ELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQFD--EFQI  280 (293)
T ss_dssp             EEEEECCCS---SCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEEC--SSCE
T ss_pred             eeeeecccc---eeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCC--CCCEEEEEEc--CCEE
Confidence            998888876   55654  566788999999999999999753         3455666655  4468899884  6789


Q ss_pred             EEEECCCeEEEEE
Q 001352          639 AVIANENRIKILE  651 (1093)
Q Consensus       639 ~~~~~dg~i~iw~  651 (1093)
                      ++++.||+|++||
T Consensus       281 ~s~s~Dg~i~iWD  293 (293)
T d1p22a2         281 VSSSHDDTILIWD  293 (293)
T ss_dssp             EECCSSSEEEEEC
T ss_pred             EEEecCCEEEEeC
Confidence            9999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.6e-26  Score=244.80  Aligned_cols=270  Identities=11%  Similarity=0.093  Sum_probs=217.7

Q ss_pred             ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccc
Q 001352          656 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA  735 (1093)
Q Consensus       656 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  735 (1093)
                      ++++.+++|..+|++++++                      |    |++|+.||+|++|+.....           ..|.
T Consensus         4 ~~i~~l~gH~~~I~~l~~s----------------------~----l~sgs~Dg~v~~Wd~~~~~-----------~~h~   46 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVN----------------------P----LISGSYDGRIMEWSSSSMH-----------QDHS   46 (287)
T ss_dssp             EEEEEECCCSSCEEEEETT----------------------T----TEEEETTSCEEETTTTEEE-----------CCCC
T ss_pred             ceeEEECCCCCceEEEEEC----------------------c----EEEEeCCCeEEEEECCCCC-----------CCCC
Confidence            5678899999999999886                      2    8999999999999976432           2478


Q ss_pred             cceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCC
Q 001352          736 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  815 (1093)
Q Consensus       736 ~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg  815 (1093)
                      ..|.++++++++. +++++.|+.+++|++....                                 ....+.++++++++
T Consensus        47 ~~V~~~~~~~~~~-~~s~s~D~~v~~w~~~~~~---------------------------------~~~~~~~~~~~~~~   92 (287)
T d1pgua2          47 NLIVSLDNSKAQE-YSSISWDDTLKVNGITKHE---------------------------------FGSQPKVASANNDG   92 (287)
T ss_dssp             SCEEEEECCSTTC-CEEEETTTEEEETTEEEEE---------------------------------CSSCEEEEEECSSS
T ss_pred             CCEEEEEecCCCe-EEEEeeccccccccccccc---------------------------------cccceeeeeeccCC
Confidence            8999999997665 7889999999999865321                                 33456788999999


Q ss_pred             CEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCcceeeecc-cccCCeEEE
Q 001352          816 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLE-GHSKRVTGL  893 (1093)
Q Consensus       816 ~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~i~iwd~~~~~~~~~l~-~h~~~V~~l  893 (1093)
                      ..++++.++.+.+|+..+++.+..+..+ ..+  .++++ ++..+++++.++ .+++|++.+.+....+. .|.+.|+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~  168 (287)
T d1pgua2          93 FTAVLTNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI  168 (287)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECS-SCE--EEEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE
T ss_pred             ceEEEeecccceeeeccceeeeeecccc-cee--eeeec-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEE
Confidence            9999988899999999999988887643 333  45666 566777777765 79999998766555544 488899999


Q ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCC----------CEEEE-EeCCeEEE
Q 001352          894 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ----------TRFLL-VHETHLAI  962 (1093)
Q Consensus       894 ~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg----------~~l~~-~~d~~i~v  962 (1093)
                      +|+|++++|++++.||.|++||+.+++...    ....+|..   .|.+++|+|++          .++++ +.|++|++
T Consensus       169 ~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~----~~~~~h~~---~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~i  241 (287)
T d1pgua2         169 SISPSETYIAAGDVMGKILLYDLQSREVKT----SRWAFRTS---KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI  241 (287)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEE----CCSCCCSS---CEEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred             EeccCccccccccccccccceeeccccccc----cccccccc---ccceeeecccccccccccCCCCeeEeecCCCeEEE
Confidence            999999999999999999999999865322    23344443   79999998754          57887 57899999


Q ss_pred             EEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001352          963 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1008 (1093)
Q Consensus       963 wd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~ 1008 (1093)
                      ||+.++........+|...|++++|+|++ .|+|++.||+|++|++
T Consensus       242 w~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         242 YSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            99987665555577899999999999987 5889999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=9.8e-26  Score=253.29  Aligned_cols=270  Identities=11%  Similarity=0.109  Sum_probs=201.5

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcc---cceEEeccccccEEEEEe------eCCCCcEEEEEEc
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAF------SAPCKQISVITCG  463 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~------s~d~~~l~l~s~~  463 (1093)
                      .++|.+.|.++++++  ++|++++.|++|+|||..+.+..   ........|...+..+..      +.... .++++++
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~   86 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL-CLVATTS   86 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE-EEEEEEE
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC-cEEEEEe
Confidence            678999999999874  69999999999999998765431   122223345444333322      22111 2678999


Q ss_pred             CCCcEEEEECCCCceeEEe----------ecCCCCeEEeeecccCC---ccEEEEEecCCeEEEEEcCCCCc--------
Q 001352          464 DDKTIKVWDAVTGSRTYSF----------EGHGAPVYSLCPHAKEN---IHFIFSISVDGKIKAWLYDSLGA--------  522 (1093)
Q Consensus       464 ~d~~i~vwd~~~~~~~~~~----------~~h~~~v~~~~~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~--------  522 (1093)
                      .||.|++|++..+.....+          ..+...+..+++.+..+   +.++++++.||.+++|++.....        
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            9999999997654332211          12445567777665432   57899999999999999853211        


Q ss_pred             ---e-------EEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc---ccCCCeEEEEEcC
Q 001352          523 ---R-------VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ---LQHNSVSVVHFDT  589 (1093)
Q Consensus       523 ---~-------~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~v~~~~  589 (1093)
                         .       .....+...+.+++|+|++ ++++++.    ++.|++||+.+++.+..+....   .|...|.+++|+|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC-EEEEEeC----CCcEEEEeecccccccccccccccccccceEEEccccc
Confidence               0       0112234468899999998 7788775    7789999999998877665322   2348999999999


Q ss_pred             CCCEEEEEeCCCc---EEEEECCCCceEEEEecC-----------CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352          590 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAG-----------GGLPENPRICFNKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       590 ~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      ++++|++|+.|++   |++||+++++.+..+...           +|...|.+++|+|++++|++++.|++|++||+.++
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence            9999999998874   899999999988877532           34567999999999999999999999999999999


Q ss_pred             ceeeeccccccccee
Q 001352          656 NSVDAAGVLSDNLRK  670 (1093)
Q Consensus       656 ~~~~~~~~~~~~i~~  670 (1093)
                      +.+..+++|.+.|..
T Consensus       322 ~~~~~l~gH~~~v~~  336 (393)
T d1sq9a_         322 ERITTLNMHCDDIEI  336 (393)
T ss_dssp             EEEEEEECCGGGCSS
T ss_pred             CEEEEECCcCCcccC
Confidence            999999999988853

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.7e-27  Score=260.22  Aligned_cols=295  Identities=9%  Similarity=0.011  Sum_probs=214.8

Q ss_pred             HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      ++.+++|++.|++++|||+|+ +||+|+.||+|+|||+.++.......                ...+|..+|.+++|+|
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~----------------~~~~h~~~V~~v~f~~   66 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLL----------------QSLRYKHPLLCCNFID   66 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEE----------------EEEECSSCEEEEEEEE
T ss_pred             EEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceEEE----------------EecCCCCCEEEEEEeC
Confidence            346789999999999999998 58999999999999998776443211                1336999999999998


Q ss_pred             C-CCEEEEEEcCCEEEEEEccCCCcccceEEeccc-cccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE----
Q 001352          408 D-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----  481 (1093)
Q Consensus       408 d-g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~----  481 (1093)
                      + +.+|++|+.|+.|++|++..+....   ....+ ........+.+++.  .+++++.|+++++||+.++.....    
T Consensus        67 ~~~~~l~sg~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~~~  141 (342)
T d1yfqa_          67 NTDLQIYVGTVQGEILKVDLIGSPSFQ---ALTNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAVKN  141 (342)
T ss_dssp             SSSEEEEEEETTSCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred             CCCCEEEEcccccceeeeecccccccc---cccccccccccccccccccc--cccccccccccceeeccccccceeeecc
Confidence            6 5689999999999999999876544   23333 33444555666666  799999999999999876544332    


Q ss_pred             eecCCCC--eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCceEEEEE-ccCCCEEEEEecCCCCc
Q 001352          482 FEGHGAP--VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAY-SANGRRLFSCGTSKEGE  555 (1093)
Q Consensus       482 ~~~h~~~--v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~-s~d~~~l~~~~~~~~~~  555 (1093)
                      ...+...  .....+  ..++..+++++.||.|++|++.......   ........+.+..+ ..++..+++++.    +
T Consensus       142 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----d  215 (342)
T d1yfqa_         142 LNSNNTKVKNKIFTM--DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----D  215 (342)
T ss_dssp             SCSSSSSSCCCEEEE--EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----T
T ss_pred             cccccccceeeeeee--eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC----C
Confidence            2223222  222233  3355689999999999999998765433   23333444555554 446677777775    6


Q ss_pred             eeEEEEeCCCCeeee------------eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCC
Q 001352          556 SFLVEWNESEGAIKR------------TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL  623 (1093)
Q Consensus       556 ~~i~iwd~~~~~~~~------------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  623 (1093)
                      +.+.+|+........            ....+..+...+.+++|+|++++|++|+.||.|++||+.+++.+..+....  
T Consensus       216 g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~--  293 (342)
T d1yfqa_         216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN--  293 (342)
T ss_dssp             SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS--
T ss_pred             CeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC--
Confidence            678888876443211            111122234678999999999999999999999999999999988876432  


Q ss_pred             CCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352          624 PENPRICFNKNGTLLAVIANENRIKILETP  653 (1093)
Q Consensus       624 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  653 (1093)
                       ....++|+|+++++++++.|+.+++|...
T Consensus       294 -~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         294 -EDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             -SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             -CCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence             35678999999999999999888877543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=8.6e-26  Score=256.44  Aligned_cols=369  Identities=9%  Similarity=0.022  Sum_probs=248.6

Q ss_pred             CceeeeecCCCce-EEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352          337 SPMSMDFHPVQHT-LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  415 (1093)
Q Consensus       337 ~V~~~~~spdg~~-llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~  415 (1093)
                      ......+++|.+. ++++.+.||+|+|||+.+++.+..                   +..| ..+..++|||||++|+++
T Consensus        20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~   79 (426)
T d1hzua2          20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVI   79 (426)
T ss_dssp             SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEE
T ss_pred             CCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEE
Confidence            3344557777554 457788899999999999999876                   4445 469999999999999999


Q ss_pred             EcCCEEEEEEccCCCcccc--eEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEee
Q 001352          416 YSKHIVQLYAYHGGSDARQ--QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC  493 (1093)
Q Consensus       416 ~~d~~i~iwd~~~~~~~~~--~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  493 (1093)
                      +.|++|++||+.+++....  +....+|.+.+.+++|+|||++ +++++..++.+++||..+++++..+.+|...+..+.
T Consensus        80 ~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~  158 (426)
T d1hzua2          80 GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT  158 (426)
T ss_dssp             ETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred             eCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCcccee
Confidence            9999999999999875332  2223467788889999999995 456677899999999999999999988887776666


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeee-e
Q 001352          494 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-Y  572 (1093)
Q Consensus       494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~  572 (1093)
                      +.+.+.                                 ...+.+++++..++....+   .+.+.+++...+..... .
T Consensus       159 ~~~~~~---------------------------------~~~i~~s~d~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~  202 (426)
T d1hzua2         159 YHPEPR---------------------------------VAAIIASHEHPEFIVNVKE---TGKVLLVNYKDIDNLTVTS  202 (426)
T ss_dssp             EESCCC---------------------------------EEEEEECSSSSEEEEEETT---TTEEEEEECSSSSSCEEEE
T ss_pred             ecCCCc---------------------------------eeEEEECCCCCEEEEecCC---CCeEEEEEeccccceeeEE
Confidence            643322                                 1223444555554444321   33455555554433222 2


Q ss_pred             ecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEE-E--EECCCeEE
Q 001352          573 QGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-V--IANENRIK  648 (1093)
Q Consensus       573 ~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~--~~~dg~i~  648 (1093)
                      ..+.   ..+..+.|+|++++++++. .+..+.+++..+++.+................+...+...+ .  ...++.+.
T Consensus       203 ~~~~---~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  279 (426)
T d1hzua2         203 IGAA---PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSIS  279 (426)
T ss_dssp             EECC---SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEE
T ss_pred             eccC---CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEE
Confidence            2223   6788999999999988865 56678999999999988877654433333444433322111 1  11233333


Q ss_pred             EEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccc
Q 001352          649 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL  728 (1093)
Q Consensus       649 iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~  728 (1093)
                      +|+....                                                      .                  
T Consensus       280 ~~~~~~~------------------------------------------------------~------------------  287 (426)
T d1hzua2         280 LIGTDPK------------------------------------------------------N------------------  287 (426)
T ss_dssp             EEECCTT------------------------------------------------------T------------------
T ss_pred             Eeecccc------------------------------------------------------c------------------
Confidence            3332211                                                      0                  


Q ss_pred             cCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeE
Q 001352          729 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC  808 (1093)
Q Consensus       729 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  808 (1093)
                                                                             |....+.....  +.  +|...+..
T Consensus       288 -------------------------------------------------------~~~~~~~~~~~--l~--g~~~~v~~  308 (426)
T d1hzua2         288 -------------------------------------------------------HPQYAWKKVAE--LQ--GQGGGSLF  308 (426)
T ss_dssp             -------------------------------------------------------CTTTBTSEEEE--EE--CSSSCCCC
T ss_pred             -------------------------------------------------------cccccceEeEE--Ee--cCCCceeE
Confidence                                                                   00000111111  11  26777888


Q ss_pred             EEEccCCCEEEEE-------e-CCeEEEEEccCceeEEEE---------CCCCCCeEEEEEcCCCCCEEEE-E----eCC
Q 001352          809 FALSKNDAYLFSA-------S-GGVISLYIVMTFKTILTI---------MPPSPTATSLAFNPHDNNVIAI-G----MDD  866 (1093)
Q Consensus       809 l~~s~dg~~la~~-------~-dg~i~iwd~~~~~~~~~~---------~~~~~~i~~l~~s~~d~~~las-g----~~d  866 (1093)
                      ++|+||+++|++.       + +++|+|||+.+++...++         ..+...+.+++||| ||++++. +    +.+
T Consensus       309 v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~  387 (426)
T d1hzua2         309 IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDS  387 (426)
T ss_dssp             EECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSC
T ss_pred             EEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCC
Confidence            9999999999853       2 578999999998876554         24566799999999 8876643 2    357


Q ss_pred             CeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEE
Q 001352          867 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV  903 (1093)
Q Consensus       867 g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~  903 (1093)
                      |.|+|||..+++....+.++.      .++|+|++-+
T Consensus       388 ~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~  418 (426)
T d1hzua2         388 SALVVVDDKTLKLKAVVKDPR------LITPTGKFNV  418 (426)
T ss_dssp             CEEEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred             CeEEEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence            899999999999998888775      3467777643

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=9.5e-26  Score=253.40  Aligned_cols=288  Identities=12%  Similarity=0.093  Sum_probs=209.5

Q ss_pred             hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEE------
Q 001352          331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV------  404 (1093)
Q Consensus       331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~------  404 (1093)
                      .++|.+.|.++++++  + ++++|+.|++|+|||..+........          ...   ....|...+..+.      
T Consensus        10 ~~~H~~~I~~v~~~~--~-~l~S~S~D~~iriWd~~~~~~~~~~~----------~~~---~~~~~~~~~~~~~~~~~~~   73 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD----------KSY---SHFVHKSGLHHVDVLQAIE   73 (393)
T ss_dssp             SSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG----------GEE---EEECCTTCEEEEEEEEEEE
T ss_pred             CCcccCccEEEEEeC--C-EEEEEECCCeEEEEECCCCCCCcccc----------eeE---eeeeccCCceEeeeEeeec
Confidence            468999999999876  4 48899999999999987665321100          000   0222444333222      


Q ss_pred             ECC-CCCEEEEEEcCCEEEEEEccCCCcccceEE-------eccccccEEEEEeeCCCC---cEEEEEEcCCCcEEEEEC
Q 001352          405 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLE-------IDAHVGNVNDLAFSAPCK---QISVITCGDDKTIKVWDA  473 (1093)
Q Consensus       405 ~s~-dg~~las~~~d~~i~iwd~~~~~~~~~~~~-------~~~h~~~v~~~~~s~d~~---~l~l~s~~~d~~i~vwd~  473 (1093)
                      .+. ++.++++++.||.|++|++..+........       ...+...+..++|.+++.   ..++++++.||++++|++
T Consensus        74 ~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~  153 (393)
T d1sq9a_          74 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF  153 (393)
T ss_dssp             TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred             cCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEe
Confidence            222 345788999999999999876654332211       123556688888887642   117899999999999997


Q ss_pred             CCCce------------------eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe------cCC
Q 001352          474 VTGSR------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY------DAP  529 (1093)
Q Consensus       474 ~~~~~------------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------~~~  529 (1093)
                      .....                  ......+...+.+++|++  ++ +|++|+.||+|++||+.+.+....+      ..|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h  230 (393)
T d1sq9a_         154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN  230 (393)
T ss_dssp             ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred             ecCCcccceeeeeeccceecccceecccCCCCcEEEEEECC--CC-EEEEEeCCCcEEEEeecccccccccccccccccc
Confidence            43210                  111123556688888865  44 8999999999999999988766543      456


Q ss_pred             CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeee-------------cccccCCCeEEEEEcCCCCEEEE
Q 001352          530 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-------------GLQLQHNSVSVVHFDTAKDQILA  596 (1093)
Q Consensus       530 ~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-------------~~~~~~~~v~~v~~~~~~~~l~~  596 (1093)
                      ...|.+++|+|||++|++++.++. .+.|++||+++++.+..+.             +|.   ..|.+++|+|++++|++
T Consensus       231 ~~~V~~l~~spdg~~l~sgs~D~t-~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~---~~V~~l~fspd~~~l~S  306 (393)
T d1sq9a_         231 SNSIRSVKFSPQGSLLAIAHDSNS-FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVMSLSFNDSGETLCS  306 (393)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETT-EEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEEEEEECSSSSEEEE
T ss_pred             cceEEEcccccccceeeeecCCCC-cceeeecccccceeeeeeccccccccceeeeeccc---CceeeeccCCCCCeeEE
Confidence            779999999999999999986432 4679999999998887764             444   88999999999999999


Q ss_pred             EeCCCcEEEEECCCCceEEEEecCCCCC--CCceEEEecCCCEEEEE
Q 001352          597 AGDDHVIKIWDMNKVQLLTTIDAGGGLP--ENPRICFNKNGTLLAVI  641 (1093)
Q Consensus       597 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~v~~s~~~~~l~~~  641 (1093)
                      ++.|++|++||+.+++++.++..|....  ....++|+|++..++++
T Consensus       307 ~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         307 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             ECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence            9999999999999999999998764321  12358899999877644

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.9e-25  Score=236.87  Aligned_cols=271  Identities=16%  Similarity=0.253  Sum_probs=218.8

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      ..+|...|+|++|  ||++||+|+.||+|+|||+.+++.++   ++.+|.+.|++++|  +++  +|++|+.|+.|++|+
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~   81 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD   81 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence            5568889998764  79999999999999999999987655   78899999999988  556  899999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCceEEEEEccCCCEEEEEe
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCG  549 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~s~d~~~l~~~~  549 (1093)
                      +..+........+.........    ....++++..++.+++|+........   ....+...+..+.+.+  ..+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s  155 (293)
T d1p22a2          82 VNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS  155 (293)
T ss_dssp             SSSCCEEEEECCCCSCEEEEEC----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred             cccccccccccccccccccccc----cccceeecccccceeEeeccccccccccccccccccccccceecc--ccccccc
Confidence            9999988877666555544332    33579999999999999998766433   4455666776666654  4566666


Q ss_pred             cCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceE
Q 001352          550 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  629 (1093)
Q Consensus       550 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  629 (1093)
                      .    ++.|++||..+++.+..+.++.   ..+..+.++  +.++++++.||.|++||+.+.+.+.....+..    ...
T Consensus       156 ~----d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~v~  222 (293)
T d1p22a2         156 G----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE----LVR  222 (293)
T ss_dssp             T----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS----CEE
T ss_pred             C----CCceeeecCCCCcEEEEEcccc---cccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce----eee
Confidence            4    6779999999999999998877   677777765  56899999999999999999999888875533    234


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCC---------CceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCc
Q 001352          630 CFNKNGTLLAVIANENRIKILETPE---------SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK  700 (1093)
Q Consensus       630 ~~s~~~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  700 (1093)
                      .+++++.+|++++.||.|++|++..         ...+..+.+|...|.+++++                        ++
T Consensus       223 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d------------------------~~  278 (293)
T d1p22a2         223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EF  278 (293)
T ss_dssp             EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SS
T ss_pred             eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc------------------------CC
Confidence            5778899999999999999999753         24566777888888777664                        56


Q ss_pred             cceeecccccceecc
Q 001352          701 PEISVEAENKSEVEK  715 (1093)
Q Consensus       701 ~l~s~~~d~~i~~w~  715 (1093)
                      ++++++.|++|++||
T Consensus       279 ~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         279 QIVSSSHDDTILIWD  293 (293)
T ss_dssp             CEEECCSSSEEEEEC
T ss_pred             EEEEEecCCEEEEeC
Confidence            799999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.2e-26  Score=251.52  Aligned_cols=264  Identities=11%  Similarity=-0.015  Sum_probs=198.2

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  472 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  472 (1093)
                      ..+|++.|++|+|||++++||+|+.||+|+|||+.++..........+|..+|.+++|+|++.. ++++|+.|+.|++|+
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD   85 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeeee
Confidence            7789999999999999999999999999999999887655544455579999999999998654 799999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe----cC--CCCceEEEEEccCCCEEE
Q 001352          473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----DA--PGLGCTRMAYSANGRRLF  546 (1093)
Q Consensus       473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~--~~~~v~~~~~s~d~~~l~  546 (1093)
                      +..+........+...+....+. ..+...+++++.++.+++||++........    ..  .......+.+.+++..++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (342)
T d1yfqa_          86 LIGSPSFQALTNNEANLGICRIC-KYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI  164 (342)
T ss_dssp             SSSSSSEEECBSCCCCSCEEEEE-EETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEE
T ss_pred             ccccccccccccccccccccccc-ccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCcee
Confidence            99988887776665554444333 234468999999999999998754433221    11  122445677888899999


Q ss_pred             EEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceE------EEEe-
Q 001352          547 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLL------TTID-  618 (1093)
Q Consensus       547 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~-  618 (1093)
                      +++.    ++.|++||+..+...............+.+..+. .++..+++++.||.+.+|+.......      .... 
T Consensus       165 ~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         165 VGMN----NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             EEES----TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             eecC----CCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            9876    6679999998776654444333223455555554 45678899999999999998653221      1111 


Q ss_pred             ------cCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecc
Q 001352          619 ------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  662 (1093)
Q Consensus       619 ------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  662 (1093)
                            ...+...+.+++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus       241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~  290 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec
Confidence                  11233457899999999999999999999999999887665543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=2.2e-25  Score=251.98  Aligned_cols=352  Identities=9%  Similarity=0.047  Sum_probs=258.8

Q ss_pred             ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE--EEEecC-CCCCCCceEEE
Q 001352          555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTIDAG-GGLPENPRICF  631 (1093)
Q Consensus       555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~-~~~~~v~~v~~  631 (1093)
                      ++.|.+||..+++.+..+..+.    .+..++|+|||+++++++.||++++||+.+++..  ..+... .+...+.+.+|
T Consensus        41 ~g~v~v~D~~t~~v~~~~~~g~----~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~  116 (432)
T d1qksa2          41 AGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKME  116 (432)
T ss_dssp             TTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCST
T ss_pred             CCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEeccc
Confidence            6779999999999999998754    5899999999999999999999999999887643  333322 11122344566


Q ss_pred             ecCCCEE-EEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccc
Q 001352          632 NKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  710 (1093)
Q Consensus       632 s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~  710 (1093)
                      +|||++| ++++.++.+++||..+++.+.....+...+....+.                                    
T Consensus       117 SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~------------------------------------  160 (432)
T d1qksa2         117 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH------------------------------------  160 (432)
T ss_dssp             TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE------------------------------------
T ss_pred             CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceecc------------------------------------
Confidence            7899986 677889999999999998887766554443322222                                    


Q ss_pred             ceecceeeccCccccccccCccccccceEEEEeecCCceEEEe-eccceeEEeeecCcccCcCcccccccCCcccCCCCC
Q 001352          711 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  789 (1093)
Q Consensus       711 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (1093)
                                             +......+.++++|..++.. ..++.+.+|+.....                     
T Consensus       161 -----------------------~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~---------------------  196 (432)
T d1qksa2         161 -----------------------PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN---------------------  196 (432)
T ss_dssp             -----------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS---------------------
T ss_pred             -----------------------CCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCC---------------------
Confidence                                   33445667889998876554 445888888754321                     


Q ss_pred             CceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEccCceeEEEECC-----CCCCeEEEEEcCCCCCEEEE
Q 001352          790 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAI  862 (1093)
Q Consensus       790 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~las  862 (1093)
                       ......+   .+...+.+++|+|||+++++++  ++.+.++|..+++.+..+..     |........+.. .+...++
T Consensus       197 -~~~~~~i---~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~~~~  271 (432)
T d1qksa2         197 -NLKTTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPVWAT  271 (432)
T ss_dssp             -EEEEEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEEEEE
T ss_pred             -cceEEEE---cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC-CCceecc
Confidence             1111111   1445678999999999998887  47899999999988877642     334445555655 5656555


Q ss_pred             Ee-CCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCce
Q 001352          863 GM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET  941 (1093)
Q Consensus       863 g~-~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  941 (1093)
                      .. .++.|.+|+.....    ...|...|....++|++..+++++.+.+.++|+..+..           .+..   ...
T Consensus       272 ~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~-----------~~~~---~~~  333 (432)
T d1qksa2         272 SHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN-----------PEAE---ISG  333 (432)
T ss_dssp             EBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC-----------SSHH---HHT
T ss_pred             cccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC-----------CCCC---eee
Confidence            54 47899999876543    35678889999999999999999999999999876522           1111   133


Q ss_pred             EEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEe-----CCCcEEEEEcCCCceEE
Q 001352          942 HIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNLEVQC 1015 (1093)
Q Consensus       942 ~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~-----~dg~v~vwd~~~~~~~~ 1015 (1093)
                      ++++ ||++.+++ +.|+.+++|++.++..+    ..|..+|.+++|||||++|+.+.     .+|.|.|||..++++..
T Consensus       334 sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l----~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~  408 (432)
T d1qksa2         334 SVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI----TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH  408 (432)
T ss_dssp             CEEE-EEGGGCCCSSSCCCEEEECHHHHHTC----CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             EEEE-EechhhcccccCCceEeccccccccc----CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEe
Confidence            4555 99999998 67889999998766443    24667899999999999886554     46889999999999988


Q ss_pred             Eec
Q 001352         1016 RIL 1018 (1093)
Q Consensus      1016 ~~~ 1018 (1093)
                      .+.
T Consensus       409 ~i~  411 (432)
T d1qksa2         409 VIK  411 (432)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            776

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=1.1e-26  Score=257.90  Aligned_cols=316  Identities=14%  Similarity=0.085  Sum_probs=220.5

Q ss_pred             eeeeecC-CCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc
Q 001352          339 MSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  417 (1093)
Q Consensus       339 ~~~~~sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~  417 (1093)
                      ..-.||| ||++ +|+++ +|.|++||+.++..+.                    + +|...|.+++|||||++|++++.
T Consensus         6 ~~~~fSP~dG~~-~a~~~-~g~v~v~d~~~~~~~~--------------------~-~~~~~v~~~~~spDg~~l~~~~~   62 (360)
T d1k32a3           6 FAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVLK--------------------V-PEPLRIRYVRRGGDTKVAFIHGT   62 (360)
T ss_dssp             GEEEEEECGGGC-EEEEE-TTEEEEECTTSSBEEE--------------------C-SCCSCEEEEEECSSSEEEEEEEE
T ss_pred             hcccccCCCCCE-EEEEE-CCeEEEEECCCCcEEE--------------------c-cCCCCEEEEEECCCCCEEEEEEc
Confidence            3467999 9995 67765 4899999999887653                    2 59999999999999999998876


Q ss_pred             CC--EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeec
Q 001352          418 KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  495 (1093)
Q Consensus       418 d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  495 (1093)
                      +.  .|++||+++++..    .+..|...|.+++|+|||+  +|++++.++.+++|++.+++....+..|...+.+++|+
T Consensus        63 ~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  136 (360)
T d1k32a3          63 REGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS  136 (360)
T ss_dssp             TTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred             CCCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhc
Confidence            54  7999999987633    4678999999999999999  89999999999999999999999999999999999995


Q ss_pred             ccCCccEEEEEe----------cCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352          496 AKENIHFIFSIS----------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  565 (1093)
Q Consensus       496 ~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~  565 (1093)
                      +  ||++|+.+.          .++.+++|++.+.+. .....+...+..++|+|||++|++++.    ++.+.+|+...
T Consensus       137 p--dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~s~----~~~~~~~d~~~  209 (360)
T d1k32a3         137 D--NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAATTENSHDYAPAFDADSKNLYYLSY----RSLDPSPDRVV  209 (360)
T ss_dssp             T--TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-EECSCSSSBEEEEEECTTSCEEEEEES----CCCCCEECSSS
T ss_pred             c--ceeeeeeeccccccceeeccccceeeeccccCce-eeecccccccccccccCCCCEEEEEeC----CCceEcccccc
Confidence            4  667887654          345689999987544 444456667889999999999999876    55688898765


Q ss_pred             Ceeee-------eeecccccCCCeEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceEEEEecCCCCCCCceEEEec
Q 001352          566 GAIKR-------TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNKVQLLTTIDAGGGLPENPRICFNK  633 (1093)
Q Consensus       566 ~~~~~-------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  633 (1093)
                      .....       .+..+.   ..+..+.|++++..+.++..+..     +..++...+                      
T Consensus       210 ~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  264 (360)
T d1k32a3         210 LNFSFEVVSKPFVIPLIP---GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG----------------------  264 (360)
T ss_dssp             SCEECCSCBEEEEEESST---TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB----------------------
T ss_pred             cceeeccccceEEEeccc---CccccceECCCcCcccccceeecccccceeecccCcC----------------------
Confidence            54321       111111   33333445555554443332211     111111111                      


Q ss_pred             CCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccccee
Q 001352          634 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  713 (1093)
Q Consensus       634 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  713 (1093)
                        ........++.+..+.....                                        .+++.++++++.++.+++
T Consensus       265 --~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~i~~  302 (360)
T d1k32a3         265 --DYRMIIPLESSILIYSVPVH----------------------------------------GEFAAYYQGAPEKGVLLK  302 (360)
T ss_dssp             --CEEEEEECSSEEEEEECCCC----------------------------------------CSHHHHHHCCCCCEEEEE
T ss_pred             --ceeEeeecCCCceEEEEEec----------------------------------------CCCeeEEEecCCCCEEEE
Confidence              11111111122111111100                                        244556667777777778


Q ss_pred             cceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCc
Q 001352          714 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN  767 (1093)
Q Consensus       714 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~  767 (1093)
                      ||+...+.          ..+.+.|.+++|+|||++|++++.||.+++|++..+
T Consensus       303 ~d~~~~~~----------~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~  346 (360)
T d1k32a3         303 YDVKTRKV----------TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP  346 (360)
T ss_dssp             EETTTCCE----------EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred             EECCCCeE----------EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence            87653221          124567899999999999999999999999997654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=2.5e-26  Score=255.06  Aligned_cols=327  Identities=11%  Similarity=-0.002  Sum_probs=229.2

Q ss_pred             EEEEcc-CCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCC
Q 001352          535 RMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKV  611 (1093)
Q Consensus       535 ~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg--~i~iwd~~~~  611 (1093)
                      .-.||| ||+++++++     .+.|++||..++..++.  +|.   ..|.+++|+|||++|++++.+.  .|++||..++
T Consensus         7 ~~~fSP~dG~~~a~~~-----~g~v~v~d~~~~~~~~~--~~~---~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~   76 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-----RGQAFIQDVSGTYVLKV--PEP---LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG   76 (360)
T ss_dssp             EEEEEECGGGCEEEEE-----TTEEEEECTTSSBEEEC--SCC---SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC
T ss_pred             cccccCCCCCEEEEEE-----CCeEEEEECCCCcEEEc--cCC---CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC
Confidence            456999 999999986     45699999998887654  444   7899999999999998866553  7999999988


Q ss_pred             ceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEe
Q 001352          612 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV  691 (1093)
Q Consensus       612 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  691 (1093)
                      +......   +...+.+++|+|+|++|++++.++.+++|+..++........                            
T Consensus        77 ~~~~~~~---~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------  125 (360)
T d1k32a3          77 KAEKFEE---NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS----------------------------  125 (360)
T ss_dssp             CEEECCC---CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC----------------------------
T ss_pred             cEEEeeC---CCceEEeeeecccccccceeccccccccccccccceeeeeec----------------------------
Confidence            7664432   334589999999999999999999999999987654433221                            


Q ss_pred             cCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCc
Q 001352          692 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL  771 (1093)
Q Consensus       692 ~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~  771 (1093)
                                                                +...+.+++|+|+|++|+.+..++...           
T Consensus       126 ------------------------------------------~~~~~~~~~~spdg~~la~~~~~~~~~-----------  152 (360)
T d1k32a3         126 ------------------------------------------REAMITDFTISDNSRFIAYGFPLKHGE-----------  152 (360)
T ss_dssp             ------------------------------------------SSSCCCCEEECTTSCEEEEEEEECSST-----------
T ss_pred             ------------------------------------------ccccccchhhccceeeeeeeccccccc-----------
Confidence                                                      223344566666666665544331100           


Q ss_pred             CcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE-eCCeEEEEEccCceeEEEECCCCCCeEEE
Q 001352          772 STEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSL  850 (1093)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l  850 (1093)
                                                                     +.+ .++.+++|++.+++... +..+...+..+
T Consensus       153 -----------------------------------------------~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~  184 (360)
T d1k32a3         153 -----------------------------------------------TDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAP  184 (360)
T ss_dssp             -----------------------------------------------TCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEE
T ss_pred             -----------------------------------------------eeeccccceeeeccccCceee-ecccccccccc
Confidence                                                           001 13468899998876644 44577788999


Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEEcCCcce-------eeecccccCCeEEEEEeCCCCEEEEEeCCCc---EEEEe--CCC
Q 001352          851 AFNPHDNNVIAIGMDDSTILIYNARSSEV-------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQ---IFVWD--VDG  918 (1093)
Q Consensus       851 ~~s~~d~~~lasg~~dg~i~iwd~~~~~~-------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~---i~iwd--~~~  918 (1093)
                      +|+| |+++|++++.++.+.+|+......       ...+..|...+..+.|++++..++++..+..   .++|.  +..
T Consensus       185 ~~sp-dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (360)
T d1k32a3         185 AFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP  263 (360)
T ss_dssp             EECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC
T ss_pred             cccC-CCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCc
Confidence            9999 999999999999999999765432       2333446666667788888887776654422   22333  333


Q ss_pred             CceeeeeeeecCCCcccCCCCceEEEEccCCC---EEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEE
Q 001352          919 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT---RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV  994 (1093)
Q Consensus       919 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~---~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l  994 (1093)
                      +..   ..+....+      .+..+.+.+.+.   +++. +.++.+++||+.+++...     |.+.|.+++|||||++|
T Consensus       264 ~~~---~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-----~~~~v~~~~~SpDG~~l  329 (360)
T d1k32a3         264 GDY---RMIIPLES------SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-----VKNNLTDLRLSADRKTV  329 (360)
T ss_dssp             BCE---EEEEECSS------EEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-----EEEEEEEEEECTTSCEE
T ss_pred             Cce---eEeeecCC------CceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE-----ecCCcCEEEECCCCCEE
Confidence            221   11222222      233344444433   3444 356789999999876532     34569999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCceEEEec
Q 001352          995 FTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       995 ~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                      ++++.||.|++||+..++....+.
T Consensus       330 ~~~~~Dg~i~v~d~~~~~~~~~~~  353 (360)
T d1k32a3         330 MVRKDDGKIYTFPLEKPEDERTVE  353 (360)
T ss_dssp             EEEETTSCEEEEESSCTTSCEECC
T ss_pred             EEEECCCeEEEEECCCCCcceEEE
Confidence            999999999999999998876554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=9.8e-25  Score=247.64  Aligned_cols=346  Identities=8%  Similarity=0.053  Sum_probs=236.7

Q ss_pred             ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe--cC-CCCCCCceEEE
Q 001352          555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--AG-GGLPENPRICF  631 (1093)
Q Consensus       555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~-~~~~~v~~v~~  631 (1093)
                      ++.|++||+.+++.+.++..+.    .+..++|+|||+++++++.|++|++||+.+++......  .. ++...+.+++|
T Consensus        41 dg~v~vwD~~t~~~~~~l~~g~----~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~  116 (426)
T d1hzua2          41 AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFK  116 (426)
T ss_dssp             TTEEEEEETTTCSEEEEEECCS----SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCST
T ss_pred             CCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeee
Confidence            7789999999999999998765    58999999999999999999999999999988654432  21 11122345667


Q ss_pred             ecCCCEEEEE-ECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccc
Q 001352          632 NKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  710 (1093)
Q Consensus       632 s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~  710 (1093)
                      +|||++++++ ..++.+.+||..++........+...+....+.+                                   
T Consensus       117 spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  161 (426)
T d1hzua2         117 GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP-----------------------------------  161 (426)
T ss_dssp             TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES-----------------------------------
T ss_pred             cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecC-----------------------------------
Confidence            7899987555 5789999999999988877776655554333332                                   


Q ss_pred             ceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecc-ceeEEeeecCcccCcCcccccccCCcccCCCCC
Q 001352          711 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  789 (1093)
Q Consensus       711 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (1093)
                                              ......+++++++..++....+ +.+.+++....                      
T Consensus       162 ------------------------~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~----------------------  195 (426)
T d1hzua2         162 ------------------------EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI----------------------  195 (426)
T ss_dssp             ------------------------CCCEEEEEECSSSSEEEEEETTTTEEEEEECSSS----------------------
T ss_pred             ------------------------CCceeEEEECCCCCEEEEecCCCCeEEEEEeccc----------------------
Confidence                                    2233445666666666555443 34444332211                      


Q ss_pred             CceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEccCceeEEEECCC--CCCeEEEEEcCCCCCEE--EEE
Q 001352          790 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVI--AIG  863 (1093)
Q Consensus       790 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~l--asg  863 (1093)
                      ..+.....   ++...+..++|+|++++++++.  ++.+.+++..+++.+......  ........+.......+  ++.
T Consensus       196 ~~~~~~~~---~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (426)
T d1hzua2         196 DNLTVTSI---GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH  272 (426)
T ss_dssp             SSCEEEEE---ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred             cceeeEEe---ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence            10111111   2567788999999999999887  477999999999988776532  22233333333122222  233


Q ss_pred             eCCCeEEEEEcCC-------cceeeecccccCCeEEEEEeCCCCEEEE-------EeCCCcEEEEeCCCCceeeeee-ee
Q 001352          864 MDDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVS-------SGGDAQIFVWDVDGWGIQTCRS-LQ  928 (1093)
Q Consensus       864 ~~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~l~s-------~s~dg~i~iwd~~~~~~~~~~~-~~  928 (1093)
                      +.|+.+.+|+...       ++....+.+|...+..++|+||+++|++       ++.|++|+|||+.+++...... +.
T Consensus       273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~  352 (426)
T d1hzua2         273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA  352 (426)
T ss_dssp             TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred             CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc
Confidence            4577888887654       4677889999999999999999999994       5568899999999876433211 11


Q ss_pred             cCCCcccCCCCceEEEEccCCCEEEEE------eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEE
Q 001352          929 TPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF  995 (1093)
Q Consensus       929 ~~~~~~~~~~~v~~~~~s~dg~~l~~~------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~  995 (1093)
                      ...++......+.+++|||||++++++      .++.|.|||..+++....+. ++.      .++|+|+|-+
T Consensus       353 ~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~-~~~------~~tp~Gk~~~  418 (426)
T d1hzua2         353 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK-DPR------LITPTGKFNV  418 (426)
T ss_dssp             HHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC-CTT------CCSEEEEEEH
T ss_pred             hhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC-CCC------ccCCCceEeE
Confidence            111122222468999999999987552      36789999999999877633 332      3568887744

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=5.1e-21  Score=205.65  Aligned_cols=275  Identities=12%  Similarity=0.104  Sum_probs=217.9

Q ss_pred             eEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE-EEEcCCEEEEEEcc
Q 001352          349 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-VAYSKHIVQLYAYH  427 (1093)
Q Consensus       349 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la-s~~~d~~i~iwd~~  427 (1093)
                      |+.++++.|++|.|||+++++.+...+                    ....+..++|||||++|+ +++.++.|++||+.
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~--------------------~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~   62 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIP--------------------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE--------------------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEE--------------------CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            667788899999999999998886522                    335678999999999885 55678999999999


Q ss_pred             CCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEE-EEE
Q 001352          428 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSI  506 (1093)
Q Consensus       428 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~  506 (1093)
                      +++.+.   .+..|. .+..++|++++.. +++++..++.+.+|+..+++....+..+ .....+++++  ++..+ +++
T Consensus        63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--dg~~~~~~~  134 (301)
T d1l0qa2          63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN  134 (301)
T ss_dssp             TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred             CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeecccc-ccceEEEeec--CCCeeeeee
Confidence            987655   455555 4688999999986 5677788899999999999999888755 4566777754  44554 566


Q ss_pred             ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEE
Q 001352          507 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH  586 (1093)
Q Consensus       507 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~  586 (1093)
                      ..++.+.+|+..+......+..+. .+..++++|+++.++++..+   ...+.+|+....+........    ..+..++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  206 (301)
T d1l0qa2         135 NGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFD---SMSISVIDTVTNSVIDTVKVE----AAPSGIA  206 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECS----SEEEEEE
T ss_pred             ccccceeeeeccccceeeecccCC-CceEEEeeccccceeeeccc---ccccccccccceeeeeccccc----CCcceee
Confidence            678899999999887777665543 56789999999999888653   456888888888777666554    3577899


Q ss_pred             EcCCCCEEEEEe---CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEE-EEEECCCeEEEEEcCCCceeeecc
Q 001352          587 FDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAG  662 (1093)
Q Consensus       587 ~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~  662 (1093)
                      ++++++.++++.   .++.|++||..+++.+..+..+.   .+..++|+|||++| ++++.+++|.+||+.+++.+..+.
T Consensus       207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            999999887754   44689999999999998887653   36899999999987 466678999999999998776654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=4e-20  Score=198.54  Aligned_cols=268  Identities=14%  Similarity=0.172  Sum_probs=204.0

Q ss_pred             EEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEE-EEECCCeEEEEEcCCCceeeecccccccceeeee
Q 001352          595 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRKLSV  673 (1093)
Q Consensus       595 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~  673 (1093)
                      ++++.|++|.+||+.+++.+.++.....   ...++|+|||++|+ +++.++.|++||+.+++.+..+.           
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g~~---p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~-----------   71 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVGSN---PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-----------   71 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSSS---EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----------
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECCCC---ceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee-----------
Confidence            4467899999999999999999986533   57899999999875 55678899999988664332111           


Q ss_pred             cCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEe
Q 001352          674 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL  753 (1093)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~  753 (1093)
                                                                                                      
T Consensus        72 --------------------------------------------------------------------------------   71 (301)
T d1l0qa2          72 --------------------------------------------------------------------------------   71 (301)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEc
Q 001352          754 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIV  831 (1093)
Q Consensus       754 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~  831 (1093)
                                                                      ....+..+++++++..++++.  ++.+.+|+.
T Consensus        72 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (301)
T d1l0qa2          72 ------------------------------------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDT  103 (301)
T ss_dssp             ------------------------------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ------------------------------------------------ccccccccccccccccccccccccceeeeccc
Confidence                                                            011234567777777666654  477899999


Q ss_pred             cCceeEEEECCCCCCeEEEEEcCCCCCEE-EEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCC-C
Q 001352          832 MTFKTILTIMPPSPTATSLAFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-A  909 (1093)
Q Consensus       832 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~l-asg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d-g  909 (1093)
                      .+++....+.. .....+++|+| +++.+ +++..++.+.+|+..+++.+..+..+ ..+..++++|+++.+++++.+ +
T Consensus       104 ~~~~~~~~~~~-~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  180 (301)
T d1l0qa2         104 TSNTVAGTVKT-GKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSM  180 (301)
T ss_dssp             TTTEEEEEEEC-SSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTT
T ss_pred             ccceeeeeccc-cccceEEEeec-CCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeeccccc
Confidence            99988888774 45678999999 66655 56667889999999999988887754 458899999999988887765 5


Q ss_pred             cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-e---CCeEEEEEcCCcceeeeeecCCCCCEEEE
Q 001352          910 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H---ETHLAIYEAEELTCLKQWFPISSVPISQA  985 (1093)
Q Consensus       910 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~---d~~i~vwd~~~~~~~~~~~~~h~~~v~~~  985 (1093)
                      .+.+|+....+...  ....   .    ..+..++|+++++.++++ .   +++|.+||+.+++.+..+..  ...+.++
T Consensus       181 ~~~~~~~~~~~~~~--~~~~---~----~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~--~~~~~~v  249 (301)
T d1l0qa2         181 SISVIDTVTNSVID--TVKV---E----AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--GPDPAGI  249 (301)
T ss_dssp             EEEEEETTTTEEEE--EEEC---S----SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--CSSEEEE
T ss_pred             ccccccccceeeee--cccc---c----CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC--CCCEEEE
Confidence            67777777654222  1111   1    136789999999998763 2   35799999999998876543  4568999


Q ss_pred             EEccCCCEE-EEEeCCCcEEEEEcCCCceEEEec
Q 001352          986 TFSCDCRMV-FTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       986 ~fs~dg~~l-~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                      +|||||++| ++++.|++|++||+.+++.+.++.
T Consensus       250 a~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         250 AVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            999999987 577789999999999999988875

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=3.4e-21  Score=210.87  Aligned_cols=309  Identities=9%  Similarity=0.034  Sum_probs=205.5

Q ss_pred             CEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCe
Q 001352          410 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  489 (1093)
Q Consensus       410 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v  489 (1093)
                      +|+++++.|++|+|||+.+++.+..+ ....+...+.+++|+|||+. ++++++.++.|.+||+.+++.+..+..+....
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            58999999999999999998766532 23345567889999999994 34678889999999999999998887654332


Q ss_pred             EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC--------CCceeEEEE
Q 001352          490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--------EGESFLVEW  561 (1093)
Q Consensus       490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~--------~~~~~i~iw  561 (1093)
                      ...                                       .+..++|+||+++++++....        ..+..+.+|
T Consensus        80 ~~~---------------------------------------~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  120 (337)
T d1pbyb_          80 RVK---------------------------------------SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY  120 (337)
T ss_dssp             EEE---------------------------------------CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred             ccc---------------------------------------ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeec
Confidence            211                                       011245555555555443210        124568899


Q ss_pred             eCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEE
Q 001352          562 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI  641 (1093)
Q Consensus       562 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  641 (1093)
                      |..+++....+....    .+..++|+|+++++++++.  .+.+||..+++....+..+..   .....+++++..+...
T Consensus       121 d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  191 (337)
T d1pbyb_         121 DAETLSRRKAFEAPR----QITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSW---EAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             ETTTTEEEEEEECCS----SCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTT---TTTTBCCCBCCCCCCC
T ss_pred             cccCCeEEEeccccC----CceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCc---cccceecCCcceeecc
Confidence            999999888887643    5778999999999999864  478899999998888876533   2333445544332221


Q ss_pred             EC-CCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeecc
Q 001352          642 AN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  720 (1093)
Q Consensus       642 ~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~  720 (1093)
                      .. .+....+....                                         ..+.........++.+.+|+     
T Consensus       192 ~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~-----  225 (337)
T d1pbyb_         192 HESSGVMATPFYTA-----------------------------------------RKDIDPADPTAYRTGLLTMD-----  225 (337)
T ss_dssp             CTTTTEEEEEEEEE-----------------------------------------BTTSCTTSGGGEEEEEEEEE-----
T ss_pred             ccccceeeeeeeee-----------------------------------------eeccceeeecccCccEEEEE-----
Confidence            11 11111111000                                         01111111222222222222     


Q ss_pred             CccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCC
Q 001352          721 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS  800 (1093)
Q Consensus       721 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (1093)
                                                                 +..                      +...... ..  
T Consensus       226 -------------------------------------------~~~----------------------~~~~~~~-~~--  237 (337)
T d1pbyb_         226 -------------------------------------------LET----------------------GEMAMRE-VR--  237 (337)
T ss_dssp             -------------------------------------------TTT----------------------CCEEEEE-EE--
T ss_pred             -------------------------------------------cCC----------------------CcEEEEE-ec--
Confidence                                                       211                      1100000 00  


Q ss_pred             CCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCccee
Q 001352          801 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  880 (1093)
Q Consensus       801 ~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~  880 (1093)
                      ++...+.++++++++.+++.+ ++.+++||+.+++.+..+. +...+.+++|+| ||++|++++.||+|++||..+++.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         238 IMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEE
Confidence            145567788899999988755 6899999999999999886 566789999999 9999999999999999999999988


Q ss_pred             eeccc
Q 001352          881 SKLEG  885 (1093)
Q Consensus       881 ~~l~~  885 (1093)
                      .+++-
T Consensus       315 ~~i~~  319 (337)
T d1pbyb_         315 GQVDL  319 (337)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            87753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.4e-21  Score=213.90  Aligned_cols=316  Identities=10%  Similarity=0.043  Sum_probs=217.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEE-EEECCCeEEEEEcCCCceeeeccccccccee
Q 001352          592 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRK  670 (1093)
Q Consensus       592 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~  670 (1093)
                      +++++++.|++|+|||+.+++.+..+..+.....+..++|+|||++++ +++.++.|.+||+.+++.+.....+....  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~--   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE--   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc--
Confidence            579999999999999999999999998765555678999999999875 55678999999999987776554322111  


Q ss_pred             eeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceE
Q 001352          671 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI  750 (1093)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  750 (1093)
                                                                                     +...+..++|+|+++.+
T Consensus        80 ---------------------------------------------------------------~~~~~~~v~~s~dg~~l   96 (337)
T d1pbyb_          80 ---------------------------------------------------------------RVKSLFGAALSPDGKTL   96 (337)
T ss_dssp             ---------------------------------------------------------------EEECTTCEEECTTSSEE
T ss_pred             ---------------------------------------------------------------cccceeeEEEcCCCcEE
Confidence                                                                           11123346777777777


Q ss_pred             EEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEE
Q 001352          751 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYI  830 (1093)
Q Consensus       751 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd  830 (1093)
                      +++..+.....|.....          ...+.+|+..++.......     ....+.+++|+|||+++++++ +.+.+||
T Consensus        97 ~~~~~~~~~~~~~~~~~----------~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~-~~~~~~d  160 (337)
T d1pbyb_          97 AIYESPVRLELTHFEVQ----------PTRVALYDAETLSRRKAFE-----APRQITMLAWARDGSKLYGLG-RDLHVMD  160 (337)
T ss_dssp             EEEEEEEEECSSCEEEC----------CCEEEEEETTTTEEEEEEE-----CCSSCCCEEECTTSSCEEEES-SSEEEEE
T ss_pred             EEeecCCcceeeecccc----------ccceeeccccCCeEEEecc-----ccCCceEEEEcCCCCEEEEEc-CCcceee
Confidence            76666544444332211          1134456666665444433     345677899999999998875 4578899


Q ss_pred             ccCceeEEEECCCCCCeEEEEEcCCCCCEEE-EEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCC
Q 001352          831 VMTFKTILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA  909 (1093)
Q Consensus       831 ~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la-sg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg  909 (1093)
                      ..+++....+..+.. .....++| ++..+. .+...+....++                   .....+.......+.++
T Consensus       161 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~  219 (337)
T d1pbyb_         161 PEAGTLVEDKPIQSW-EAETYAQP-DVLAVWNQHESSGVMATPF-------------------YTARKDIDPADPTAYRT  219 (337)
T ss_dssp             TTTTEEEEEECSTTT-TTTTBCCC-BCCCCCCCCTTTTEEEEEE-------------------EEEBTTSCTTSGGGEEE
T ss_pred             eecCcEEEEeecCCc-cccceecC-Ccceeeccccccceeeeee-------------------eeeeeccceeeecccCc
Confidence            999998888765432 22334455 333222 122222222221                   12222333344445566


Q ss_pred             cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEcc
Q 001352          910 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSC  989 (1093)
Q Consensus       910 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~  989 (1093)
                      .+.+|+..++..........    .   ..+..++++|++.++++. ++.+++||+.+++.+..+.  +...+.+++|||
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~  289 (337)
T d1pbyb_         220 GLLTMDLETGEMAMREVRIM----D---VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP--LPHSYYSVNVST  289 (337)
T ss_dssp             EEEEEETTTCCEEEEEEEEC----S---SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE--CSSCCCEEEECT
T ss_pred             cEEEEEcCCCcEEEEEecCC----C---cceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc--CCCCEEEEEECC
Confidence            79999998876443222211    1   247788999999988764 5899999999999988765  456788999999


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001352          990 DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1019 (1093)
Q Consensus       990 dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 1019 (1093)
                      ||++|++++.|+.|+|||+.+++.+.++..
T Consensus       290 dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         290 DGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            999999999999999999999999988873

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=1e-21  Score=215.98  Aligned_cols=315  Identities=10%  Similarity=-0.029  Sum_probs=216.0

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEEcCCCceeeeccc
Q 001352          585 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGV  663 (1093)
Q Consensus       585 v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~  663 (1093)
                      ++|+++++++++++.+++|.+||+.+++.+.++..+.. ..+.+++|+|||++++++ ..++.|.+||+.+++.+.....
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            46889999999999999999999999999998875433 246799999999987554 5789999999998876654432


Q ss_pred             ccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEe
Q 001352          664 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY  743 (1093)
Q Consensus       664 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  743 (1093)
                      ......                                                                ....+..++|
T Consensus        81 ~~~~~~----------------------------------------------------------------~~~~~~~v~~   96 (346)
T d1jmxb_          81 SSVPGE----------------------------------------------------------------VGRSMYSFAI   96 (346)
T ss_dssp             CCSTTE----------------------------------------------------------------EEECSSCEEE
T ss_pred             cccccc----------------------------------------------------------------cCCceEEEEE
Confidence            111100                                                                1112234566


Q ss_pred             ecCCceEEEeecc------------ceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEE
Q 001352          744 NNGGQAIFALASN------------GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  811 (1093)
Q Consensus       744 s~~g~~l~~~~~d------------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  811 (1093)
                      +|||++++++..+            +.+.+|+...                      +.........  .....+..+.+
T Consensus        97 s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~~~~~~~~~--~~~~~~~~~~~  152 (346)
T d1jmxb_          97 SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD----------------------GLEAKPVRTF--PMPRQVYLMRA  152 (346)
T ss_dssp             CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG----------------------GGGBCCSEEE--ECCSSCCCEEE
T ss_pred             ecCCCEEEEEecCCcceeeeeccCcceEEEEeccc----------------------ceeeeEEEee--eccCceEEEEe
Confidence            6777666655433            3344444332                      2211111100  12344556777


Q ss_pred             ccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEE-EEEeCCCeEEEEEcCCcceeeecccccCCe
Q 001352          812 SKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRV  890 (1093)
Q Consensus       812 s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~l-asg~~dg~i~iwd~~~~~~~~~l~~h~~~V  890 (1093)
                      ++++++++.  ++.+.+|++.+++.+..+..+ .....+.++| ++..+ +.+..++.+.+++..               
T Consensus       153 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------  213 (346)
T d1jmxb_         153 ADDGSLYVA--GPDIYKMDVKTGKYTVALPLR-NWNRKGYSAP-DVLYFWPHQSPRHEFSMLYTI---------------  213 (346)
T ss_dssp             CTTSCEEEE--SSSEEEECTTTCCEEEEECST-TCCCTTBCCC-BCCCCCCCCCTTCEEEEEEEE---------------
T ss_pred             cCCCEEEEe--CCcceEEEccCCCEEEEEecC-CCccceEEec-cccEEEEEecCCCceEeeeee---------------
Confidence            888876654  466899999999998888754 3456677888 55544 444445555555432               


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcce
Q 001352          891 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC  970 (1093)
Q Consensus       891 ~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~  970 (1093)
                        ..+.+....++++..++.+.+|++.++.........    +.   ..+..+.+++++.+++...++.+.+||..+++.
T Consensus       214 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~  284 (346)
T d1jmxb_         214 --ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----LT---ELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKL  284 (346)
T ss_dssp             --EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEECSSCTTEEEEEESEEEEEETTTTEE
T ss_pred             --eeeccCceeEeeccCCceEEEEECCCCceEEEEeec----cc---ceeEEEEEeCCCCEEEEecCCeEEEEECCCCcE
Confidence              122334455667777888999999987644322111    11   257789999999999988888999999999998


Q ss_pred             eeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352          971 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       971 ~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                      +.....+  ..+.+++|||||++|++++.|+.|++||+.+++.+.++.
T Consensus       285 ~~~~~~~--~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         285 IKAANLD--HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             EEEEECS--SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence            8876544  468899999999999999999999999999999998887

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=4e-21  Score=211.13  Aligned_cols=323  Identities=10%  Similarity=0.014  Sum_probs=216.0

Q ss_pred             EEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEec-cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352          403 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  481 (1093)
Q Consensus       403 v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  481 (1093)
                      ++|+++++||++++.+++|.+||+.+++.++   ++. .|...+.+++|+|||+. ++++++.++.|++||+.+++.+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEE---EEEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeee
Confidence            4789999999999999999999999987655   444 45667889999999995 457788899999999999999887


Q ss_pred             eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC--------C
Q 001352          482 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--------E  553 (1093)
Q Consensus       482 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~--------~  553 (1093)
                      +...........                                      .+..++|+|||++++++....        .
T Consensus        78 ~~~~~~~~~~~~--------------------------------------~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~  119 (346)
T d1jmxb_          78 ANLSSVPGEVGR--------------------------------------SMYSFAISPDGKEVYATVNPTQRLNDHYVV  119 (346)
T ss_dssp             EESCCSTTEEEE--------------------------------------CSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             ecccccccccCC--------------------------------------ceEEEEEecCCCEEEEEecCCcceeeeecc
Confidence            753322111000                                      112355666666665543210        1


Q ss_pred             CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec
Q 001352          554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  633 (1093)
Q Consensus       554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  633 (1093)
                      .+..+.+|+..+++....+..+.. ...+..+.+++++..++++   +.+.+|+..+++.+..+..+..   ...+.++|
T Consensus       120 ~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  192 (346)
T d1jmxb_         120 KPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNW---NRKGYSAP  192 (346)
T ss_dssp             CCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTC---CCTTBCCC
T ss_pred             CcceEEEEecccceeeeEEEeeec-cCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCC---ccceEEec
Confidence            255688999988877666554331 2345566777777655542   5689999999999888876533   45566777


Q ss_pred             CCCEEEEEEC-CCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccce
Q 001352          634 NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  712 (1093)
Q Consensus       634 ~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  712 (1093)
                      ++..++.... ++.+.+++...                                                          
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------  214 (346)
T d1jmxb_         193 DVLYFWPHQSPRHEFSMLYTIA----------------------------------------------------------  214 (346)
T ss_dssp             BCCCCCCCCCTTCEEEEEEEEE----------------------------------------------------------
T ss_pred             cccEEEEEecCCCceEeeeeee----------------------------------------------------------
Confidence            7765543332 33333332110                                                          


Q ss_pred             ecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCce
Q 001352          713 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF  792 (1093)
Q Consensus       713 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (1093)
                                                   .+.+....+.+...++.+.+|++..                      +...
T Consensus       215 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~  243 (346)
T d1jmxb_         215 -----------------------------RFKDDKQDPATADLLYGYLSVDLKT----------------------GKTH  243 (346)
T ss_dssp             -----------------------------EC-------CCCEEEEEEEEEETTT----------------------CCEE
T ss_pred             -----------------------------eeccCceeEeeccCCceEEEEECCC----------------------CceE
Confidence                                         0011111122222233344443322                      1111


Q ss_pred             eeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001352          793 MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY  872 (1093)
Q Consensus       793 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iw  872 (1093)
                      .....   ++...+..+.+++++.+++...++.+.+||..+++.+..+. +...+.+++|+| |+++|++++.||.|++|
T Consensus       244 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~  318 (346)
T d1jmxb_         244 TQEFA---DLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVF  318 (346)
T ss_dssp             EEEEE---ECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEE
T ss_pred             EEEee---cccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEE
Confidence            11100   25667788899999999998888999999999999988876 455799999999 89999999999999999


Q ss_pred             EcCCcceeeecccccC
Q 001352          873 NARSSEVISKLEGHSK  888 (1093)
Q Consensus       873 d~~~~~~~~~l~~h~~  888 (1093)
                      |+.+++.+.+++.+.+
T Consensus       319 D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         319 NPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             ETTTTEEEEEEECSSS
T ss_pred             ECccCCEEEEEECCCC
Confidence            9999999988875443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.83  E-value=1.1e-17  Score=185.46  Aligned_cols=334  Identities=11%  Similarity=0.020  Sum_probs=222.6

Q ss_pred             ecCCCCCeEEEEECCCCCEEEEE-----EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEE-----
Q 001352          393 VRDPGVSVNRVVWSPDGSLLGVA-----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-----  462 (1093)
Q Consensus       393 ~~~h~~~V~~v~~s~dg~~las~-----~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~-----  462 (1093)
                      ...+..++.+++++|||+++++.     +..+.|.+||..+++.+.   .+..+..+  .++|+|||+.  ++++     
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~~--l~va~~~~~   88 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGSE--FALASTSFS   88 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCCc--cEEEcCCCCE--EEEEeecCC
Confidence            33578899999999999999775     234579999999997665   45555443  7999999994  5544     


Q ss_pred             -----cCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001352          463 -----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  537 (1093)
Q Consensus       463 -----~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  537 (1093)
                           ..++.|.+||..+++.+..+..+......+...+                                     ..+.
T Consensus        89 ~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~  131 (373)
T d2madh_          89 RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-------------------------------------WMNA  131 (373)
T ss_pred             cccccccceEEEEEECCCCcEEEEEecCCcceeEeccCC-------------------------------------CcEE
Confidence                 3467899999999999888776655444332211                                     2367


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEE
Q 001352          538 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTT  616 (1093)
Q Consensus       538 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~  616 (1093)
                      |+++++.++....+.  +..+.+|+..+++.....       ....++.++|+++.+ ++.+.|+.+.+|+..++.....
T Consensus       132 ~s~dg~~~~v~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~  202 (373)
T d2madh_         132 NTPNNADLLFFQFAA--GPAVGLVVQGGSSDDQLL-------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG  202 (373)
T ss_pred             EEeCCCcEEEEEEcC--CCceEEeeccCCeEEEEe-------ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEE
Confidence            888888877665432  456888988877654443       235678899998766 5688999999999998887766


Q ss_pred             EecCC----CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEec
Q 001352          617 IDAGG----GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN  692 (1093)
Q Consensus       617 ~~~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  692 (1093)
                      .....    .........+++++. ++..+.++.+.+|+...........                              
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~------------------------------  251 (373)
T d2madh_         203 LVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAP------------------------------  251 (373)
T ss_pred             EeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEe------------------------------
Confidence            54321    111223445555554 4455677888898877653221110                              


Q ss_pred             CCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcC
Q 001352          693 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS  772 (1093)
Q Consensus       693 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~  772 (1093)
                                           |+.                 .........+.|.+...++.+.++...            
T Consensus       252 ---------------------~~~-----------------~~~~~~~~~~~~~~~~~~~~~~d~~~~------------  281 (373)
T d2madh_         252 ---------------------IDA-----------------LSGGRKADTWRPGGWQQVAYLKSSDGI------------  281 (373)
T ss_pred             ---------------------ecc-----------------ccCcEEeeeeccCcceeeEEecCCCeE------------
Confidence                                 000                 011112222233332222222222111            


Q ss_pred             cccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEE
Q 001352          773 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLA  851 (1093)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~  851 (1093)
                                                          ..+.+++..++... ++.+.+||..+++.+..+. +...+..++
T Consensus       282 ------------------------------------~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a  324 (373)
T d2madh_         282 ------------------------------------YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAIS  324 (373)
T ss_pred             ------------------------------------EEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEE
Confidence                                                11223333444443 6889999999999998876 667789999


Q ss_pred             EcCCCCC--EEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCC
Q 001352          852 FNPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA  898 (1093)
Q Consensus       852 ~s~~d~~--~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d  898 (1093)
                      |+| ||+  ++++++.|+.|++||+.+++.+..+.++....+.+++.++
T Consensus       325 ~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         325 VAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             ECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            999 776  4578899999999999999999999988888888887654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.82  E-value=9.8e-18  Score=185.99  Aligned_cols=307  Identities=12%  Similarity=0.020  Sum_probs=214.0

Q ss_pred             hccCCCCceeeeecCCCceEEEEE----ccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352          331 LIEGSSSPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  406 (1093)
Q Consensus       331 l~~h~~~V~~~~~spdg~~llasg----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s  406 (1093)
                      ...+..++..++++|||++++++.    +..+.|.+||..+++.+..                   +..+..  ..++||
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~S   74 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAA   74 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCCC--ccEEEc
Confidence            346778999999999999865542    2346799999999998875                   333433  369999


Q ss_pred             CCCCEEEEEE----------cCCEEEEEEccCCCcccceEEeccccccE-------EEEEeeCCCCcEEEEEEcCCCcEE
Q 001352          407 PDGSLLGVAY----------SKHIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDDKTIK  469 (1093)
Q Consensus       407 ~dg~~las~~----------~d~~i~iwd~~~~~~~~~~~~~~~h~~~v-------~~~~~s~d~~~l~l~s~~~d~~i~  469 (1093)
                      |||++|++++          .++.|.+||..+++.+.   .+..+....       ..+.|++|++.+++.....++.+.
T Consensus        75 pDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~  151 (373)
T d2madh_          75 HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVG  151 (373)
T ss_pred             CCCCEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceE
Confidence            9999999875          35789999999987654   333343322       457899999975566667778899


Q ss_pred             EEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCceEEEEEccCCC
Q 001352          470 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANGR  543 (1093)
Q Consensus       470 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~d~~  543 (1093)
                      +|+..+++......    ...++.+++.+. ..+++.+.||.+.+|+.............      ......+.+++++.
T Consensus       152 ~~~~~~~~~~~~~~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (373)
T d2madh_         152 LVVQGGSSDDQLLS----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR  226 (373)
T ss_pred             EeeccCCeEEEEec----cceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce
Confidence            99988887665443    345566655432 46678899999999999887665543321      12234556666666


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeeeeeee--ccc-------ccCCCeEEEEEcCCCCEEE----------EEeCCCcEE
Q 001352          544 RLFSCGTSKEGESFLVEWNESEGAIKRTYQ--GLQ-------LQHNSVSVVHFDTAKDQIL----------AAGDDHVIK  604 (1093)
Q Consensus       544 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~-------~~~~~v~~v~~~~~~~~l~----------~~~~dg~i~  604 (1093)
                      +++...     ++.+.+|+..++.......  ...       ........+++++++..++          ....++.+.
T Consensus       227 ~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~  301 (373)
T d2madh_         227 IVWPVY-----SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT  301 (373)
T ss_pred             EEEecC-----CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEE
Confidence            655432     4558888877665332211  111       0012233455666655443          455677899


Q ss_pred             EEECCCCceEEEEecCCCCCCCceEEEecCCCE--EEEEECCCeEEEEEcCCCceeeecccccccceeeeec
Q 001352          605 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN  674 (1093)
Q Consensus       605 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~  674 (1093)
                      +||..+++.+..+....   .+..++|+|||+.  +++++.|+.|++||+.+++.+..+..+......+++.
T Consensus       302 ~~d~~t~~~~~~~~~~~---~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~  370 (373)
T d2madh_         302 SVTGLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM  370 (373)
T ss_pred             EEECCCCcEEEEecCCC---CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEe
Confidence            99999999998887543   3789999999984  4678889999999999999999998777666666554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=1.3e-17  Score=183.58  Aligned_cols=299  Identities=14%  Similarity=0.096  Sum_probs=200.9

Q ss_pred             CceeeeecCCCceEEEEE----ccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352          337 SPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  412 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l  412 (1093)
                      ++.-.+.+|||++++++.    ..+++|.+||..+++.+..                   +..+.  +..++|||||++|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g~--~~~~a~SpDg~~l   61 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGF--LPNPVVADDGSFI   61 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECS--SCEEEECTTSSCE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECCC--CCceEEcCCCCEE
Confidence            455567799999865553    2356799999999988765                   22233  3369999999999


Q ss_pred             EEEE----------cCCEEEEEEccCCCcccceEEecccc----ccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce
Q 001352          413 GVAY----------SKHIVQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  478 (1093)
Q Consensus       413 as~~----------~d~~i~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~  478 (1093)
                      ++.+          .++.|.+||..+++.+........+.    .....++|++|++.++++..+.+..+.+|+..+++.
T Consensus        62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~  141 (355)
T d2bbkh_          62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF  141 (355)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence            8753          47889999999987665332211121    233568999999965555556778999999999999


Q ss_pred             eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec------CCCCceEEEEEccCCCEEEEEecCC
Q 001352          479 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------APGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       479 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      +..+..+.......    . .....++.+.||....+............      .+...+....+++++..++.++.  
T Consensus       142 ~~~~~~~~~~~~~~----~-~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  214 (355)
T d2bbkh_         142 KRMLDVPDCYHIFP----T-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--  214 (355)
T ss_dssp             EEEEECCSEEEEEE----E-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred             eeEEecCCcceEee----c-CCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC--
Confidence            98886544322111    1 11234555566665555544433322221      12223555678888888887764  


Q ss_pred             CCceeEEEEeCCCCeee--eeeeccc-------ccCCCeEEEEEcCCCCEEEEEeCC----------CcEEEEECCCCce
Q 001352          553 EGESFLVEWNESEGAIK--RTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGDD----------HVIKIWDMNKVQL  613 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~--~~~~~~~-------~~~~~v~~v~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~  613 (1093)
                        ++.+++|+...+...  .....+.       ........+++++++..++....+          ..|.+||..+++.
T Consensus       215 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~  292 (355)
T d2bbkh_         215 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER  292 (355)
T ss_dssp             --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred             --CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence              567999999877542  2222111       001223457899999988876533          3699999999999


Q ss_pred             EEEEecCCCCCCCceEEEecCCC--EEEEEECCCeEEEEEcCCCceeeecccccccc
Q 001352          614 LTTIDAGGGLPENPRICFNKNGT--LLAVIANENRIKILETPESNSVDAAGVLSDNL  668 (1093)
Q Consensus       614 ~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i  668 (1093)
                      +..+....   .+.+++|+|||+  +++++..|+.|++||..+++.+..+..+...-
T Consensus       293 ~~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p  346 (355)
T d2bbkh_         293 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGP  346 (355)
T ss_dssp             EEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSC
T ss_pred             EEEecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCc
Confidence            88887543   368999999998  34566779999999999999988877554433

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=9.5e-18  Score=184.66  Aligned_cols=330  Identities=13%  Similarity=0.056  Sum_probs=201.3

Q ss_pred             CeEEEEECCCCCEEEEEE-----cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEE--------EcCC
Q 001352          399 SVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT--------CGDD  465 (1093)
Q Consensus       399 ~V~~v~~s~dg~~las~~-----~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s--------~~~d  465 (1093)
                      ++.-.+.+|||+++++..     .+..|.+||..+++.+.   ++..+..  ..++|||||+.+++++        ++.|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~---~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d   77 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERT   77 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---EEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE---EEECCCC--CceEEcCCCCEEEEEeCCCccccccCCC
Confidence            334456789999998763     35579999999997655   4444433  3799999999644332        3457


Q ss_pred             CcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001352          466 KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL  545 (1093)
Q Consensus       466 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  545 (1093)
                      +.|++||..+++.+..+..+......+.                                     .....++|+|+++++
T Consensus        78 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~s~dg~~~  120 (355)
T d2bbkh_          78 DYVEVFDPVTLLPTADIELPDAPRFLVG-------------------------------------TYPWMTSLTPDGKTL  120 (355)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBS-------------------------------------CCGGGEEECTTSSEE
T ss_pred             CEEEEEECCCCCEEEEEecCCcceeecC-------------------------------------CCCceEEEecCCCee
Confidence            8899999999998887765443322111                                     112346789999988


Q ss_pred             EEEecCCCCceeEEEEeCCCCeeeeeeeccccc----CCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEecC
Q 001352          546 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAG  620 (1093)
Q Consensus       546 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~  620 (1093)
                      +++...  .+..+.+|+..+++.+..+......    ......+.+++++..++.. ..++.+.+++......       
T Consensus       121 ~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-------  191 (355)
T d2bbkh_         121 LFYQFS--PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------  191 (355)
T ss_dssp             EEEECS--SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-------
T ss_pred             EEecCC--CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-------
Confidence            877543  2566899999999888777653300    0122234455555444432 2333333333332221       


Q ss_pred             CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecc--cccccceeeeecCCCceeeeeccCCceEecCCCCCC
Q 001352          621 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG--VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED  698 (1093)
Q Consensus       621 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  698 (1093)
                      .....+....+++++..++.++.++.+++|+...+.......  .+........+                         
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------  246 (355)
T d2bbkh_         192 EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW-------------------------  246 (355)
T ss_dssp             TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE-------------------------
T ss_pred             eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeee-------------------------
Confidence            122235667888889999999999999999988653221100  00000000000                         


Q ss_pred             CccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccc
Q 001352          699 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK  778 (1093)
Q Consensus       699 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~  778 (1093)
                                                         .......+++++++..++....++...                  
T Consensus       247 -----------------------------------~p~~~~~~~~~~d~~~~~~~~~~~~~~------------------  273 (355)
T d2bbkh_         247 -----------------------------------RPGGWQQVAYHRALDRIYLLVDQRDEW------------------  273 (355)
T ss_dssp             -----------------------------------EECSSSCEEEETTTTEEEEEEEECCTT------------------
T ss_pred             -----------------------------------eccceEEEEEeCCCCeEEEEeccCCce------------------
Confidence                                               000111234445544443333221000                  


Q ss_pred             cCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCC
Q 001352          779 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN  858 (1093)
Q Consensus       779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~  858 (1093)
                                                             ......+.|.+||..+++.+..+. +...+.+++|+| |++
T Consensus       274 ---------------------------------------~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~  312 (355)
T d2bbkh_         274 ---------------------------------------RHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQ-DEK  312 (355)
T ss_dssp             ---------------------------------------CTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECC-SSS
T ss_pred             ---------------------------------------eecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcC-CCC
Confidence                                                   000012468999999999888876 345688999999 776


Q ss_pred             --EEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCC
Q 001352          859 --VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA  898 (1093)
Q Consensus       859 --~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~d  898 (1093)
                        +++++..|+.|++||+.+++.+.++.++......+.+.++
T Consensus       313 ~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         313 PLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             CEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             eEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence              4567788999999999999999999877666666665544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=4.3e-16  Score=169.34  Aligned_cols=294  Identities=11%  Similarity=0.144  Sum_probs=193.3

Q ss_pred             EEEEEecCCeEEEEEcCCCCceE--EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccC
Q 001352          502 FIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH  579 (1093)
Q Consensus       502 ~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~  579 (1093)
                      .+++++.|++|++|+++......  ....+...+..++|+|||++|++++.   .++.|++|++........+..+....
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~---~d~~i~~~~i~~~~~~~~~~~~~~~~   82 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALP   82 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEeeecccC
Confidence            45778899999999998765433  23356678999999999999977654   25679999988765554444443334


Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC-CCeEEEEEcCCCce
Q 001352          580 NSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETPESNS  657 (1093)
Q Consensus       580 ~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~  657 (1093)
                      ..+..++|+|||+++++++ .++.+.+|+..............+...+.++.++|+++++++++. +..+.+|+......
T Consensus        83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~  162 (333)
T d1ri6a_          83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  162 (333)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCc
Confidence            5678899999999999987 477899999887776655544444456788999999998888775 45688888765432


Q ss_pred             eeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccc
Q 001352          658 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK  737 (1093)
Q Consensus       658 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  737 (1093)
                      .........                                                             .   ......
T Consensus       163 ~~~~~~~~~-------------------------------------------------------------~---~~~g~~  178 (333)
T d1ri6a_         163 LVAQDPAEV-------------------------------------------------------------T---TVEGAG  178 (333)
T ss_dssp             EEEEEEEEE-------------------------------------------------------------E---CSTTCC
T ss_pred             ceeeeceee-------------------------------------------------------------e---eecCCC
Confidence            211110000                                                             0   002234


Q ss_pred             eEEEEeecCCceEEEeec-cceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCC
Q 001352          738 ISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  816 (1093)
Q Consensus       738 i~~l~~s~~g~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  816 (1093)
                      ...++|++++..++.... .+...+|++...........      .         .... ............+++++|++
T Consensus       179 p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~---------~~~~-~~~~~~~~~~~~~~~s~d~~  242 (333)
T d1ri6a_         179 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ------T---------LDMM-PENFSDTRWAADIHITPDGR  242 (333)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE------E---------EECS-CTTCCSCCCEEEEEECTTSS
T ss_pred             ccEEEEeccceeEEeeccccCceEEEeecccccceeeee------e---------eeee-ecCCCccccceeEEEecccC
Confidence            567888888887766554 45667776543221000000      0         0000 00011345567789999999


Q ss_pred             EEEEEe--CCeEEEEEccCceeEEE---ECCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEc--CCcce
Q 001352          817 YLFSAS--GGVISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNA--RSSEV  879 (1093)
Q Consensus       817 ~la~~~--dg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~-~dg~i~iwd~--~~~~~  879 (1093)
                      ++....  ++.+.+|++........   .......+..++|+| ||++|++++ .++.|.+|++  .+|++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~sp-DGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         243 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT-TSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeC-CCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            888776  58899999875533322   223445678899999 898877765 4689999954  56654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=4e-16  Score=169.61  Aligned_cols=280  Identities=14%  Similarity=0.161  Sum_probs=187.2

Q ss_pred             EEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE-cCCEEEEEEccC
Q 001352          350 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHG  428 (1093)
Q Consensus       350 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~-~d~~i~iwd~~~  428 (1093)
                      ++++++.|++|+||++++...+....                 ...|.+.|..++|||||++|++++ .|+.|++|++..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~-----------------~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~   68 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQ-----------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP   68 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEE-----------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEE-----------------EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeC
Confidence            56788899999999997654433211                 224788999999999999996655 589999999987


Q ss_pred             CCcccceEEeccccccEEEEEeeCCCCcEEEEEEc-CCCcEEEEECCCCceeEE--eecCCCCeEEeeecccCCccEEEE
Q 001352          429 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFS  505 (1093)
Q Consensus       429 ~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s  505 (1093)
                      +...........+...+..++|+|||+  +|++++ .++.|.+|+.........  ...+...+.++.+++  ++++++.
T Consensus        69 ~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--d~~~~~~  144 (333)
T d1ri6a_          69 DDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP--DNRTLWV  144 (333)
T ss_dssp             TTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT--TSSEEEE
T ss_pred             CCCcEEEeeecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceecccccCCCccceEEEeee--cceeeec
Confidence            654433322234555678899999999  455554 577899999877665443  345666777788754  5566666


Q ss_pred             Ee-cCCeEEEEEcCCCCceEE------ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC--Ceee--eeee-
Q 001352          506 IS-VDGKIKAWLYDSLGARVD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GAIK--RTYQ-  573 (1093)
Q Consensus       506 ~~-~dg~i~vwd~~~~~~~~~------~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~~~--~~~~-  573 (1093)
                      ++ .+..+.+|+.........      ..........++|++++..++.....   .....+|+...  ....  .... 
T Consensus       145 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~  221 (333)
T d1ri6a_         145 PALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL---NSSVDVWELKDPHGNIECVQTLDM  221 (333)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT---TTEEEEEESSCTTSCCEEEEEEEC
T ss_pred             cccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccc---cCceEEEeecccccceeeeeeeee
Confidence            65 556799999877554332      22334466889999999998876543   23355555432  2211  1111 


Q ss_pred             --cccccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEec-CCCCCCCceEEEecCCCEEEEEEC-CCeEE
Q 001352          574 --GLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIAN-ENRIK  648 (1093)
Q Consensus       574 --~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~  648 (1093)
                        ...........+++++++++++.. ..++.+.+|++........... ......+..++|+|||++|++++. ++.|.
T Consensus       222 ~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~  301 (333)
T d1ri6a_         222 MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHIS  301 (333)
T ss_dssp             SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEE
T ss_pred             eecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEE
Confidence              111122456778899999987774 5678899998876543322211 111234678999999999887754 68999


Q ss_pred             EEEcC
Q 001352          649 ILETP  653 (1093)
Q Consensus       649 iw~~~  653 (1093)
                      +|++.
T Consensus       302 v~~id  306 (333)
T d1ri6a_         302 VYEIV  306 (333)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.61  E-value=2.4e-13  Score=155.03  Aligned_cols=221  Identities=13%  Similarity=0.085  Sum_probs=140.5

Q ss_pred             eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc-
Q 001352          339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-  417 (1093)
Q Consensus       339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~-  417 (1093)
                      ..+.|.+|+++ +..  .++.|.+||+.+++....              +....+..|...|.++.|||||++||+++. 
T Consensus        20 ~~~~W~~d~~~-~~~--~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~   82 (470)
T d2bgra1          20 YSLRWISDHEY-LYK--QENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNY   82 (470)
T ss_dssp             CCCEECSSSEE-EEE--SSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEE
T ss_pred             cCCEeCCCCEE-EEE--cCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECC
Confidence            45889999984 553  578999999999986532              112225667889999999999999998854 


Q ss_pred             --------CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC---
Q 001352          418 --------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG---  486 (1093)
Q Consensus       418 --------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~---  486 (1093)
                              ++.+.+||+++++..    .+..|...+..+.|||||+  .++.. .++.+.+|+..+++..+....+.   
T Consensus        83 ~~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~  155 (470)
T d2bgra1          83 VKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI  155 (470)
T ss_dssp             EECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred             cceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCc
Confidence                    467899999997633    4668899999999999999  46654 47789999999887765433221   


Q ss_pred             ---------------CCeEEeeecccCCccEEEEEecCCe-EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001352          487 ---------------APVYSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  550 (1093)
Q Consensus       487 ---------------~~v~~~~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~  550 (1093)
                                     +....+.|  ++||+.|+....|.+ +..|.+......   .........+.+...+..      
T Consensus       156 ~~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~------  224 (470)
T d2bgra1         156 IYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV------  224 (470)
T ss_dssp             EEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC------
T ss_pred             ccccccceeeeeeecCCccccEE--CCCCCccceeEecCCcCceEEEEeeccC---CCCCCeeeeecccccccc------
Confidence                           22233445  567888888876544 544433211000   000111222222222211      


Q ss_pred             CCCCceeEEEEeCCCCeeeeeeeccc--------ccCCCeEEEEEcCCCCEEEE
Q 001352          551 SKEGESFLVEWNESEGAIKRTYQGLQ--------LQHNSVSVVHFDTAKDQILA  596 (1093)
Q Consensus       551 ~~~~~~~i~iwd~~~~~~~~~~~~~~--------~~~~~v~~v~~~~~~~~l~~  596 (1093)
                        .....+.+|++.++........+.        .....+..+.|.+++..++.
T Consensus       225 --~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  276 (470)
T d2bgra1         225 --NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ  276 (470)
T ss_dssp             --CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred             --CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEE
Confidence              124458889988776544332211        11234567888888765554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=2e-14  Score=158.23  Aligned_cols=292  Identities=11%  Similarity=0.010  Sum_probs=195.0

Q ss_pred             cCCCCceeeeecCCCceEEEE--EccCCc--EEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352          333 EGSSSPMSMDFHPVQHTLLLV--GTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  408 (1093)
Q Consensus       333 ~h~~~V~~~~~spdg~~llas--g~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d  408 (1093)
                      .+.+....++.++|++...++  ...++.  |.+||..+++.+..                   ..++..+  .++|+||
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spD   75 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHS   75 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTT
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCC
Confidence            456677888889999863333  344454  77779999988765                   3334443  5899999


Q ss_pred             CCEEEEEE----------cCCEEEEEEccCCCcccceEEecccc-------ccEEEEEeeCCCCcEEEEEEcCCCcEEEE
Q 001352          409 GSLLGVAY----------SKHIVQLYAYHGGSDARQQLEIDAHV-------GNVNDLAFSAPCKQISVITCGDDKTIKVW  471 (1093)
Q Consensus       409 g~~las~~----------~d~~i~iwd~~~~~~~~~~~~~~~h~-------~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  471 (1093)
                      |++|++.+          .|+.|.+||..+++.+..   +..+.       .....++|+|||++ ++++...++.+.+|
T Consensus        76 g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~  151 (368)
T d1mdah_          76 GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGL  151 (368)
T ss_dssp             SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEE
T ss_pred             CCEEEEEcccCccccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEE
Confidence            99999865          367899999999876553   22221       12346899999996 33444568999999


Q ss_pred             ECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec------CCCCceEEEEEccCCCEE
Q 001352          472 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------APGLGCTRMAYSANGRRL  545 (1093)
Q Consensus       472 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~~~v~~~~~s~d~~~l  545 (1093)
                      |+.+++.+..+..+.....    .+. ....++..+.||.+.+|++..........      .+...+....+.+++..+
T Consensus       152 d~~~~~~~~~~~~~~~~~~----~~~-~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  226 (368)
T d1mdah_         152 SVPGASDDQLTKSASCFHI----HPG-AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV  226 (368)
T ss_dssp             EETTTEEEEEEECSSCCCC----EEE-ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             ECCCCcEeEEeeccCcceE----ccC-CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEE
Confidence            9999999988876654321    112 22467778889999999887655443321      222344567778888776


Q ss_pred             EEEecCCCCceeEEEEeCCCCeeeeee--eccc-------ccCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEE
Q 001352          546 FSCGTSKEGESFLVEWNESEGAIKRTY--QGLQ-------LQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWD  607 (1093)
Q Consensus       546 ~~~~~~~~~~~~i~iwd~~~~~~~~~~--~~~~-------~~~~~v~~v~~~~~~~~l~~~~~d---------g~i~iwd  607 (1093)
                      ...+      +.+++++...+......  ....       ........+++++++..++....+         ..|.+||
T Consensus       227 ~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D  300 (368)
T d1mdah_         227 WAVA------SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT  300 (368)
T ss_dssp             ECBS------SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred             EecC------CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE
Confidence            6542      22555555544332211  1110       001223457889998887765322         3589999


Q ss_pred             CCCCceEEEEecCCCCCCCceEEEecCCCE--EEEEECCCeEEEEEcCCCceeeeccc
Q 001352          608 MNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGV  663 (1093)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~  663 (1093)
                      ..+++.+..+....   .+..++|+|||+.  ++++..++.|++||..+++.+..+..
T Consensus       301 ~~t~~~~~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         301 ASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             SSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             CCCCcEeEEecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            99999888776542   3788999999973  45666789999999999988877764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=8e-14  Score=153.36  Aligned_cols=314  Identities=13%  Similarity=-0.007  Sum_probs=191.5

Q ss_pred             eEEEEEccCCCEEEEE-ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe----------CCC
Q 001352          533 CTRMAYSANGRRLFSC-GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDH  601 (1093)
Q Consensus       533 v~~~~~s~d~~~l~~~-~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~----------~dg  601 (1093)
                      ...++..++++..... .....+...+++||..+++.+....++.   .  ..++|+|||+.+++.+          .|+
T Consensus        22 ~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~---~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~   96 (368)
T d1mdah_          22 SCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF---L--SLAVAGHSGSDFALASTSFARSAKGKRTD   96 (368)
T ss_dssp             CBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT---T--CEEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred             ccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC---C--CcceECCCCCEEEEEcccCccccccccCC
Confidence            3344567788765332 2334456779999999999999887755   2  3588999999988754          367


Q ss_pred             cEEEEECCCCceEEEEecCCCC-----CCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCceeeecccccccceeeeecC
Q 001352          602 VIKIWDMNKVQLLTTIDAGGGL-----PENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNP  675 (1093)
Q Consensus       602 ~i~iwd~~~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~  675 (1093)
                      .|.+||..+++.+..+..+...     .....++|+|||++++++. .++.+.+||+.+.+.......+....    +.+
T Consensus        97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~  172 (368)
T d1mdah_          97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHP  172 (368)
T ss_dssp             EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEE
T ss_pred             eEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----Ecc
Confidence            8999999999999888654321     2245799999999998876 57999999999987776655432221    111


Q ss_pred             CCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeec
Q 001352          676 ISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS  755 (1093)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~  755 (1093)
                      .+       ....+.+    ++||+.++....++....|...          ......+...+....+.+++..+..  .
T Consensus       173 ~~-------~~~~v~~----~~Dg~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~--~  229 (368)
T d1mdah_         173 GA-------AATHYLG----SCPASLAASDLAAAPAAAGIVG----------AQCTGAQNCSSQAAQANYPGMLVWA--V  229 (368)
T ss_dssp             EE-------TTEEECC----CCTTSCEEEECCSSCCCCEECC----------CCSCTTSCBCSCCEEETTTTEEEEC--B
T ss_pred             CC-------CceEEEE----cCCCCEEEEEecCCceeeeeee----------cccccccccceeecccccCcEEEEe--c
Confidence            00       0001111    3444444433333333222211          1111123334445666777664433  3


Q ss_pred             cceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--C--------Ce
Q 001352          756 NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--G--------GV  825 (1093)
Q Consensus       756 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--d--------g~  825 (1093)
                      ++.+.++++..+.            +.+++...+.........  ........+++++++..+.+..  +        ..
T Consensus       230 ~~~v~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~  295 (368)
T d1mdah_         230 ASSILQGDIPAAG------------ATMKAAIDGNESGRKADN--FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN  295 (368)
T ss_dssp             SSCCEEEECCSSC------------CEEECCCCSSCTHHHHTT--EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE
T ss_pred             CCCEEEEeecCCc------------eEEEeecccccceeeeee--ecCCCceeEEEcCCCCEEEEEecCCCceeecCCce
Confidence            4556666554332            122222221111000000  0112234588999998877653  1        24


Q ss_pred             EEEEEccCceeEEEECCCCCCeEEEEEcCCCCC--EEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEE
Q 001352          826 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF  895 (1093)
Q Consensus       826 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~  895 (1093)
                      |.+||..+++.+..+. +...+.+++|+| |++  +++++..|+.|++||..+++.+..++.... -..|++
T Consensus       296 v~v~D~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         296 TSSVTASVGQTSGPIS-NGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             EEEEESSSCCEEECCE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred             EEEEECCCCcEeEEec-CCCceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence            8999999999887765 345788999999 765  356677889999999999999998875433 334443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.55  E-value=1.7e-15  Score=163.78  Aligned_cols=329  Identities=9%  Similarity=-0.002  Sum_probs=198.4

Q ss_pred             EEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEE
Q 001352          457 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM  536 (1093)
Q Consensus       457 l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  536 (1093)
                      ..++|++.+|.|+|||+.+++.++++..         |++.+.  . ..|..+.+.+++  ...........|.......
T Consensus        12 y~f~Sgg~sG~V~V~dlpS~r~l~~IpV---------fspd~~--~-g~g~~~es~~vl--~~~~~~~~gd~hhP~~s~t   77 (441)
T d1qnia2          12 YGFWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSA--T-GWGITNESKEIL--GGDQQYLNGDCHHPHISMT   77 (441)
T ss_dssp             EEEEECBTTCCEEEEEETTTEEEEEECS---------SSBCTT--T-CTTTSHHHHHHH--CSSSCCSCCCBCCCEEEEE
T ss_pred             EEEEeCCCCCcEEEEeCCCCcEEEEEEe---------EcCCCC--E-EEEECCccceEE--ecccccccCcccCCCccee
Confidence            3688999999999999999999998852         333221  1 011111111111  0000111112233344555


Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCE--EEEEeCCC-------------
Q 001352          537 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ--ILAAGDDH-------------  601 (1093)
Q Consensus       537 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~--l~~~~~dg-------------  601 (1093)
                      .++|||++|++...   .+.+|.++|+.+++..+.+.-..  ...+..++|+|+++.  +++.+++.             
T Consensus        78 ~gtpDGr~lfV~d~---~~~rVavIDl~t~k~~~ii~iP~--g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~  152 (441)
T d1qnia2          78 DGRYDGKYLFINDK---ANTRVARIRLDIMKTDKITHIPN--VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLD  152 (441)
T ss_dssp             TTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECTT--CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGG
T ss_pred             cccCCCCEEEEEcC---CCCEEEEEECCCCcEeeEEecCC--CCCccceEEeccCCEEEEEeccCCcccccCcccccccc
Confidence            56899999988764   36679999999999888766432  357899999999884  44444332             


Q ss_pred             ----cEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCe-EEEEEcCCCceeeecccccccceeeeecCC
Q 001352          602 ----VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR-IKILETPESNSVDAAGVLSDNLRKLSVNPI  676 (1093)
Q Consensus       602 ----~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~  676 (1093)
                          .+..+|..+.+...++.....   ...++++|+|+++++.+.+.. +..++..+.....                 
T Consensus       153 ~~~~~~~~iD~~t~~v~~qI~v~~~---p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d-----------------  212 (441)
T d1qnia2         153 NSYTMFTAIDAETMDVAWQVIVDGN---LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRD-----------------  212 (441)
T ss_dssp             GEEEEEEEEETTTCSEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBC-----------------
T ss_pred             cccceEEeecCccceeeEEEecCCC---ccceEECCCCCEEEEEecCCCceEEEeccCcceEE-----------------
Confidence                235688888888887776543   678999999999998876532 1111111111100                 


Q ss_pred             CceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecc
Q 001352          677 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN  756 (1093)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  756 (1093)
                                                       .+.+.+.                     -..++++++|+++.. +.+
T Consensus       213 ---------------------------------~i~v~n~---------------------p~~~~~~~dGk~~~v-~~~  237 (441)
T d1qnia2         213 ---------------------------------WVVVFNV---------------------ERIAAAVKAGNFKTI-GDS  237 (441)
T ss_dssp             ---------------------------------EEEEEEH---------------------HHHHHHHHTTCCBCC-TTC
T ss_pred             ---------------------------------EEEeCCc---------------------cceEEEecCCCEEEe-CCC
Confidence                                             0001000                     011234556664432 233


Q ss_pred             ceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEccCc
Q 001352          757 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTF  834 (1093)
Q Consensus       757 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~  834 (1093)
                      +.+.++....                      ...+.....     ......+.++|||+++++++  +++|.+||+++.
T Consensus       238 ~v~vvd~~~~----------------------~~v~~~IPv-----gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~  290 (441)
T d1qnia2         238 KVPVVDGRGE----------------------SEFTRYIPV-----PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL  290 (441)
T ss_dssp             CCCEEECSSS----------------------CSSEEEECC-----BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred             CcEEEEcccC----------------------CceEEEEeC-----CCCccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence            4444433211                      111222211     22345789999999998876  699999998753


Q ss_pred             ee-----------EEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc----------ceeeec-----ccccC
Q 001352          835 KT-----------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS----------EVISKL-----EGHSK  888 (1093)
Q Consensus       835 ~~-----------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~----------~~~~~l-----~~h~~  888 (1093)
                      ..           +.......-.....+|++ ++..+.+...|..|..|++...          ..+.++     .||..
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~  369 (441)
T d1qnia2         291 DDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNH  369 (441)
T ss_dssp             HHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEE
T ss_pred             hhHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCc
Confidence            21           111111112345568999 8888999999999999998521          123333     57888


Q ss_pred             CeEEEEEeCCCCEEEEEeC
Q 001352          889 RVTGLVFSDALNILVSSGG  907 (1093)
Q Consensus       889 ~V~~l~~s~dg~~l~s~s~  907 (1093)
                      .+.+.+++|||++|++++.
T Consensus       370 ~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         370 ASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             ETTTTSTTCCCCEEEEEES
T ss_pred             cccccccCCCCcEEEecCc
Confidence            8888899999999999943

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.55  E-value=1.3e-15  Score=164.84  Aligned_cols=360  Identities=10%  Similarity=0.006  Sum_probs=219.9

Q ss_pred             CCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEE
Q 001352          346 VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA  425 (1093)
Q Consensus       346 dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd  425 (1093)
                      |+-|.+++|+.+|.|+||++.+++.+...                        +    .|+|++... .|..+.+.+++.
T Consensus         9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~I------------------------p----Vfspd~~~g-~g~~~es~~vl~   59 (441)
T d1qnia2           9 DEYYGFWSGGHQGEVRVLGVPSMRELMRI------------------------P----VFNVDSATG-WGITNESKEILG   59 (441)
T ss_dssp             CSEEEEEECBTTCCEEEEEETTTEEEEEE------------------------C----SSSBCTTTC-TTTSHHHHHHHC
T ss_pred             CCEEEEEeCCCCCcEEEEeCCCCcEEEEE------------------------E----eEcCCCCEE-EEECCccceEEe
Confidence            44577888999999999999999888641                        1    267777542 222222222211


Q ss_pred             ccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec-CCCCeEEeeecccCCccEEE
Q 001352          426 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIF  504 (1093)
Q Consensus       426 ~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~  504 (1093)
                        ++....   .-..|.-......++|||++ ++++...+++|.++|+.++++...+.- +...+..++|++.++-.+++
T Consensus        60 --~~~~~~---~gd~hhP~~s~t~gtpDGr~-lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~  133 (441)
T d1qnia2          60 --GDQQYL---NGDCHHPHISMTDGRYDGKY-LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVF  133 (441)
T ss_dssp             --SSSCCS---CCCBCCCEEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEE
T ss_pred             --cccccc---cCcccCCCcceecccCCCCE-EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEE
Confidence              111111   12235555666778999995 456677888999999999998887653 56778889997665544666


Q ss_pred             EEecCC-----------------eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352          505 SISVDG-----------------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  567 (1093)
Q Consensus       505 s~~~dg-----------------~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~  567 (1093)
                      ..+.+.                 .+..+|..+.+........ .....+.++|||+++++.+.+.+   .+..++..+..
T Consensus       134 ~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse---~~~~id~~t~~  209 (441)
T d1qnia2         134 CNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSE---RAVDLAGTMRN  209 (441)
T ss_dssp             EEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTT---CCSSHHHHTCS
T ss_pred             eccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCC---ceEEEeccCcc
Confidence            655443                 2355777777666555443 35678999999999998775332   13333444443


Q ss_pred             eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEE-EECCCe
Q 001352          568 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENR  646 (1093)
Q Consensus       568 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~  646 (1093)
                      ....+....    ....+.+.|+|+++.. +.++.+.+++....+.+..++....   ...+.++|||+++++ +..+++
T Consensus       210 ~~d~i~v~n----~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSPDGkyl~~~~~~~~t  281 (441)
T d1qnia2         210 DRDWVVVFN----VERIAAAVKAGNFKTI-GDSKVPVVDGRGESEFTRYIPVPKN---PHGLNTSPDGKYFIANGKLSPT  281 (441)
T ss_dssp             SBCEEEEEE----HHHHHHHHHTTCCBCC-TTCCCCEEECSSSCSSEEEECCBSS---CCCEEECTTSCEEEEECTTSSB
T ss_pred             eEEEEEeCC----ccceEEEecCCCEEEe-CCCCcEEEEcccCCceEEEEeCCCC---ccCceECCCCCEEEEeCCcCCc
Confidence            333322211    1223456788887655 4467888888887788888876533   578999999998765 566899


Q ss_pred             EEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccc
Q 001352          647 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  726 (1093)
Q Consensus       647 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~  726 (1093)
                      +.+||+....  ..+.+......++...+                                              .    
T Consensus       282 vsv~d~~k~~--~~~~~~~~~~~~~~~~~----------------------------------------------~----  309 (441)
T d1qnia2         282 VSVIAIDKLD--DLFEDKIELRDTIVAEP----------------------------------------------E----  309 (441)
T ss_dssp             EEEEEGGGHH--HHTTTSSCGGGGEEECC----------------------------------------------B----
T ss_pred             EEEEEeehhh--hHhhccCCcceEEEeec----------------------------------------------c----
Confidence            9999987421  11111111111111110                                              0    


Q ss_pred             cccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCe
Q 001352          727 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  806 (1093)
Q Consensus       727 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  806 (1093)
                             ..-.....+|.++|..+.+...|..+..|++........+..    .-.+|+.     +-....+  +|...+
T Consensus       310 -------~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~----~~~v~~~-----~~v~y~~--GH~~~~  371 (441)
T d1qnia2         310 -------LGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDR----VNYIRQK-----LDVQYQP--GHNHAS  371 (441)
T ss_dssp             -------CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCC----CCCEEEE-----EECSSCE--EEEEET
T ss_pred             -------cccCcccceecCCceEEEcccccceEEEeccchhhhhhccCC----CceeEec-----cccccCC--CCCccc
Confidence                   011234457899998888888899999999854321111110    0111110     0000011  477777


Q ss_pred             eEEEEccCCCEEEEEe
Q 001352          807 PCFALSKNDAYLFSAS  822 (1093)
Q Consensus       807 ~~l~~s~dg~~la~~~  822 (1093)
                      .+.+++|||+||++++
T Consensus       372 ~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         372 LTESRDADGKWLVVLS  387 (441)
T ss_dssp             TTTSTTCCCCEEEEEE
T ss_pred             cccccCCCCcEEEecC
Confidence            7788999999999995

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.54  E-value=1.3e-12  Score=148.79  Aligned_cols=142  Identities=11%  Similarity=0.057  Sum_probs=102.7

Q ss_pred             EEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec-----CCCCeEEeeecccCCccEEEEEec---------CCeE
Q 001352          447 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISV---------DGKI  512 (1093)
Q Consensus       447 ~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~---------dg~i  512 (1093)
                      .+.|.+|++  ++..  .|+.|.+||+.+++....+..     |...|.++.|+  +||++|+.++.         ++.+
T Consensus        21 ~~~W~~d~~--~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~S--pDg~~i~~~~~~~~~~r~s~~~~~   94 (470)
T d2bgra1          21 SLRWISDHE--YLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS--PDGQFILLEYNYVKQWRHSYTASY   94 (470)
T ss_dssp             CCEECSSSE--EEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEEC--TTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             CCEeCCCCE--EEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEEC--CCCCEEEEEECCcceeeeccCceE
Confidence            578999997  5543  477899999999988765543     45778888885  57788888754         5678


Q ss_pred             EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc---------------
Q 001352          513 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------------  577 (1093)
Q Consensus       513 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------------  577 (1093)
                      .+||+.+++ ...+..+...+..+.|||||+.+|...     +..+++|+..+++..+.......               
T Consensus        95 ~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-----~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~  168 (470)
T d2bgra1          95 DIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-----NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (470)
T ss_dssp             EEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-----TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             EEEECCCCc-ccccccCCccccccccccCcceeeEee-----cccceEEECCCCceeeeeeccCCCcccccccceeeeee
Confidence            999998765 445666777899999999999999975     44699999998877655433220               


Q ss_pred             cCCCeEEEEEcCCCCEEEEEeCC
Q 001352          578 QHNSVSVVHFDTAKDQILAAGDD  600 (1093)
Q Consensus       578 ~~~~v~~v~~~~~~~~l~~~~~d  600 (1093)
                      ..+....+.|+|||++|+....|
T Consensus       169 ~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         169 VFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             TSSSSBCEEECTTSSEEEEEEEE
T ss_pred             ecCCccccEECCCCCccceeEec
Confidence            01223445677777777665543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.28  E-value=7.7e-09  Score=111.74  Aligned_cols=160  Identities=14%  Similarity=0.146  Sum_probs=103.3

Q ss_pred             CCeeEEEEccCCCEEEEEe--CCeEEEEEccC-ceeE--EEE--CCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcC
Q 001352          804 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTI--LTI--MPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR  875 (1093)
Q Consensus       804 ~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~-~~~~--~~~--~~~~~~i~~l~~s~~d~~~lasg~-~dg~i~iwd~~  875 (1093)
                      ..+.+++|+|||+++++++  .+.|.+|+... +...  ...  .........++|+| +++++++.. .+++|.+|++.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEec
Confidence            3467899999999999887  36788887653 3222  222  23456789999999 787775554 57899999997


Q ss_pred             Ccceeeecc-------------------cccCCeEEEEEeCCCCEEEEEeC-C-----CcEEEEeCCCCce-eeeeee-e
Q 001352          876 SSEVISKLE-------------------GHSKRVTGLVFSDALNILVSSGG-D-----AQIFVWDVDGWGI-QTCRSL-Q  928 (1093)
Q Consensus       876 ~~~~~~~l~-------------------~h~~~V~~l~~s~dg~~l~s~s~-d-----g~i~iwd~~~~~~-~~~~~~-~  928 (1093)
                      .++......                   .+......+.++|||++|+++.. +     ..|..|++..... .....+ .
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            654321110                   12223567899999999887643 2     2377777764321 111111 1


Q ss_pred             cCCCcccCCCCceEEEEcc-CCCEEEEE--eCCeEEEEEcCCc
Q 001352          929 TPDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEEL  968 (1093)
Q Consensus       929 ~~~~~~~~~~~v~~~~~s~-dg~~l~~~--~d~~i~vwd~~~~  968 (1093)
                      ....    ......++|+| +|++|+++  .++.|.+|++...
T Consensus       304 ~~~~----G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         304 TPTS----GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CSSC----CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEcC----CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            1111    12467899998 89988885  5688999987543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.26  E-value=1.7e-09  Score=116.95  Aligned_cols=254  Identities=10%  Similarity=0.102  Sum_probs=153.1

Q ss_pred             CCCCeeEEEEccCCCEEEEEeCCeEEEEEccC-ceeEEEE-CCCCCCeEEEEEcCCCCCEE--EEEe-CCCeEEEEEcCC
Q 001352          802 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTI-MPPSPTATSLAFNPHDNNVI--AIGM-DDSTILIYNARS  876 (1093)
Q Consensus       802 ~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~-~~~~~~~-~~~~~~i~~l~~s~~d~~~l--asg~-~dg~i~iwd~~~  876 (1093)
                      ....+..|+|+|+++.|.++..+.+..|.+.. +...... .........+++++ +++.+  +++. ..++|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccC
Confidence            34456679999999999998888888887763 2222221 22334566788888 77743  3322 235555554321


Q ss_pred             -c------------ceeee----cccccCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCC-ceeeeeeeecCCCcccCC
Q 001352          877 -S------------EVISK----LEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGW-GIQTCRSLQTPDGVMTLA  937 (1093)
Q Consensus       877 -~------------~~~~~----l~~h~~~V~~l~~s~dg~~l~s~s~-dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~  937 (1093)
                       +            +.-..    -......+.+++|+|||+++++++. ...|.+|+.... .............    .
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~----g  192 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP----G  192 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST----T
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC----C
Confidence             1            11000    0112234789999999998888764 346888876543 2222112222211    1


Q ss_pred             CCceEEEEccCCCEEEEE--eCCeEEEEEcCCcceeeeeec------------------CCCCCEEEEEEccCCCEEEEE
Q 001352          938 PSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFP------------------ISSVPISQATFSCDCRMVFTS  997 (1093)
Q Consensus       938 ~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~~~~~~~------------------~h~~~v~~~~fs~dg~~l~t~  997 (1093)
                      .....++|+|||+++.+.  .+++|.+|++..+........                  .+......+.++|||++|+++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            358899999999999875  467899999876543211100                  112345678999999999877


Q ss_pred             eC------CCcEEEEEcCCCceEEEecc-ccccCCCCCCCccceeEEEeCCCCCCEEEEE-eCCCcEEEEecCCCC
Q 001352          998 FV------DGTLSIHEASNLEVQCRILS-TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG-LTNGEVYVIEPNEPG 1065 (1093)
Q Consensus       998 ~~------dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~-~~dg~v~~w~~~~~~ 1065 (1093)
                      ..      .+.|..|++.....+.+... ......     .-.+..++++|.+|++|+++ ..++.|.+|++....
T Consensus       273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-----G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-----GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-----CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             cccCCCccceEEEEEEecCCCceeeEeEeeEEEcC-----CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            43      23488888866543332221 111111     13455688998667866655 567899999986654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.9e-09  Score=118.73  Aligned_cols=374  Identities=9%  Similarity=-0.011  Sum_probs=204.8

Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe---------CCCcEEEEE
Q 001352          537 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG---------DDHVIKIWD  607 (1093)
Q Consensus       537 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~---------~dg~i~iwd  607 (1093)
                      .|.+++.++...     .++.|.+||+.+++....+.........+....|+||+++++...         ..+.+.++|
T Consensus        23 ~W~~~~~~~~~~-----~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d   97 (465)
T d1xfda1          23 KWISDTEFIYRE-----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (465)
T ss_dssp             CBSSSSCBCCCC-----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             EEeCCCcEEEEe-----CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence            577787765432     244599999998877555555443345677888999999988764         357789999


Q ss_pred             CCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCC
Q 001352          608 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  687 (1093)
Q Consensus       608 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  687 (1093)
                      +.++..............+....|||||+.+|.... +.|.+.+..++...+........                    
T Consensus        98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~-~nl~~~~~~~~~~~~lt~~g~~~--------------------  156 (465)
T d1xfda1          98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG--------------------  156 (465)
T ss_dssp             SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTT--------------------
T ss_pred             ccCCceeeccCccCCccccceeeeccCCceEEEEec-ceEEEEecCCCceEEEecccCcc--------------------
Confidence            998886554433333345667899999999998874 67888777665444332211110                    


Q ss_pred             ceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecc-ceeEEeeecC
Q 001352          688 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPR  766 (1093)
Q Consensus       688 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~v~vw~~~~  766 (1093)
                                   .+..|-.|     |-.+.              .-...-.++.|||||+.|+....| ..+..+.+..
T Consensus       157 -------------~i~nG~~d-----~vyee--------------e~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~  204 (465)
T d1xfda1         157 -------------VIYNGLSD-----WLYEE--------------EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPT  204 (465)
T ss_dssp             -------------TEEEEECC-----HHHHH--------------TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECC
T ss_pred             -------------eeeccccc-----hhhhh--------------hhccccceEEECCCCCeEEEEEecccccceeeccc
Confidence                         00000000     10000              000111345677777777666543 4455554432


Q ss_pred             ccc-----------CcCcccccccCCcccCCCCCCceeeccCCC--CCCCCCeeEEEEccCCCEEEEEeC-----CeEEE
Q 001352          767 NDL-----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTD--SNSQEAVPCFALSKNDAYLFSASG-----GVISL  828 (1093)
Q Consensus       767 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~s~dg~~la~~~d-----g~i~i  828 (1093)
                      ...           ...|.......+.++++.++..........  .....-+..+.|++++++++...+     ..+.+
T Consensus       205 ~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~  284 (465)
T d1xfda1         205 YTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL  284 (465)
T ss_dssp             CSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred             ccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEE
Confidence            110           011111122234556665544222111110  012224677899999987777652     24888


Q ss_pred             EEccCceeEEEECCCC-CC----eEEEEEcCCCCCEEE---EEeCCC--eEEEEEcC------CcceeeecccccCCeEE
Q 001352          829 YIVMTFKTILTIMPPS-PT----ATSLAFNPHDNNVIA---IGMDDS--TILIYNAR------SSEVISKLEGHSKRVTG  892 (1093)
Q Consensus       829 wd~~~~~~~~~~~~~~-~~----i~~l~~s~~d~~~la---sg~~dg--~i~iwd~~------~~~~~~~l~~h~~~V~~  892 (1093)
                      +|..+|+....+.... ..    -....|++ ||+.++   ....+|  .++...+.      .++.+..+....-.|..
T Consensus       285 ~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~  363 (465)
T d1xfda1         285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK  363 (465)
T ss_dssp             EETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred             EcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEE
Confidence            9999987765543221 11    23467999 665332   222333  34444332      23444555544445666


Q ss_pred             E-EEeCCCCEEE-EEeCCC--cEEEEe--CCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCC----eEEE
Q 001352          893 L-VFSDALNILV-SSGGDA--QIFVWD--VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAI  962 (1093)
Q Consensus       893 l-~~s~dg~~l~-s~s~dg--~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~----~i~v  962 (1093)
                      + +|.++++.+. ++..++  .-.+|.  +.++...  .++.......   .....+.|||+|++++....+    .+.+
T Consensus       364 i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~--~~lt~~~~~~---~~~~~~~~S~~~~y~v~~~s~~~~P~~~~  438 (465)
T d1xfda1         364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR--QCLSCDLVEN---CTYFSASFSHSMDFFLLKCEGPGVPMVTV  438 (465)
T ss_dssp             EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCC--BCSSTTSSSS---CCCCEEEECTTSSEEEEECCSSSSCCEEE
T ss_pred             EEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcc--eeeccccCCC---CCEEEEEECCCCCEEEEEeecCCCCeEEE
Confidence            4 6888887765 343332  223444  4433221  1222111111   246789999999999874322    4777


Q ss_pred             EEcCCcceeeee
Q 001352          963 YEAEELTCLKQW  974 (1093)
Q Consensus       963 wd~~~~~~~~~~  974 (1093)
                      ++..+++.+..+
T Consensus       439 ~~~~~~~~~~~L  450 (465)
T d1xfda1         439 HNTTDKKKMFDL  450 (465)
T ss_dssp             EETTTCCEEEEE
T ss_pred             EECCCCCEEEEE
Confidence            777777776654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=1.7e-08  Score=104.28  Aligned_cols=222  Identities=10%  Similarity=0.094  Sum_probs=134.3

Q ss_pred             CCCCCeEEEEECCCCCEEEEEEcCC---EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEE-
Q 001352          395 DPGVSVNRVVWSPDGSLLGVAYSKH---IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV-  470 (1093)
Q Consensus       395 ~h~~~V~~v~~s~dg~~las~~~d~---~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v-  470 (1093)
                      .+...+.+.+|||||++||......   .+.+.+..++...    .+..+........|+|||+.+ +.....++...+ 
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~~~  110 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLY  110 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSEE-EEEECTTSSCEEE
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----EEeeeecccccceecCCCCee-eEeeecCCcccee
Confidence            3567788999999999999875443   4667777665422    345677888999999999963 223333333333 


Q ss_pred             -EECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeE--EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEE
Q 001352          471 -WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI--KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  547 (1093)
Q Consensus       471 -wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i--~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~  547 (1093)
                       +........... ..........+.+.. ...+++...+|..  .+.++..... ..............++|+++.++.
T Consensus       111 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~  187 (269)
T d2hqsa1         111 VMDLASGQIRQVT-DGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVM  187 (269)
T ss_dssp             EEETTTCCEEECC-CCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEE
T ss_pred             ecccccccceeee-ecccccccccccccc-ccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEE
Confidence             332233322222 233333333333332 2345555556654  4445444332 233444556778899999999998


Q ss_pred             EecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEEEEecCCCCC
Q 001352          548 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLP  624 (1093)
Q Consensus       548 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~  624 (1093)
                      ..... +...+.+.+...+......  ..   .......|+|||++|+..+.   ...|+++++..+.... +...  ..
T Consensus       188 ~~~~~-~~~~i~~~~~~~~~~~~~~--~~---~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~--~g  258 (269)
T d2hqsa1         188 VSSNG-GQQHIAKQDLATGGVQVLS--ST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LPAT--DG  258 (269)
T ss_dssp             EEECS-SCEEEEEEETTTCCEEECC--CS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CCCS--SS
T ss_pred             EeecC-CceeeeEeecccccceEee--cC---ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-EeCC--CC
Confidence            77543 3566777787766543222  22   45677899999999876543   3468899998766544 3322  22


Q ss_pred             CCceEEEec
Q 001352          625 ENPRICFNK  633 (1093)
Q Consensus       625 ~v~~v~~s~  633 (1093)
                      .+...+|||
T Consensus       259 ~~~~p~WSP  267 (269)
T d2hqsa1         259 QVKFPAWSP  267 (269)
T ss_dssp             EEEEEEECC
T ss_pred             cEEeEEeCC
Confidence            356778887

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.05  E-value=1.9e-08  Score=105.65  Aligned_cols=231  Identities=11%  Similarity=0.044  Sum_probs=153.6

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  416 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~  416 (1093)
                      .+..++++|||+ |+++...+++|..|+.......                     +......+.+++|++||+++++..
T Consensus        29 ~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~gla~~~dG~l~v~~~   86 (302)
T d2p4oa1          29 FLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSGLAFTSNGDLVATGW   86 (302)
T ss_dssp             CEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEEEEECTTSCEEEEEE
T ss_pred             CcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcceEEEcCCCCeEEEec
Confidence            688999999998 7888888999988886643222                     223557899999999999999988


Q ss_pred             cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec--------C--C
Q 001352          417 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--------H--G  486 (1093)
Q Consensus       417 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~--------h--~  486 (1093)
                      .++.+..|+......................+++.++++  ++++.+.++.+..+|..++........        +  .
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (302)
T d2p4oa1          87 NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF  164 (302)
T ss_dssp             CTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred             CCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeEecCCccceeeccCcc
Confidence            888888888765442222112223455688999999998  788888889999999887754332211        1  1


Q ss_pred             CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE--EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352          487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  564 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~  564 (1093)
                      .....+.+  . ++.++++.+..+.|..++........  ...........++++++|++.++...    .+.|..++..
T Consensus       165 ~~~ngi~~--~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~----~~~V~~i~p~  237 (302)
T d2p4oa1         165 PAANGLKR--F-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI----YNSVVRIAPD  237 (302)
T ss_dssp             CSEEEEEE--E-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT----TCCEEEECTT
T ss_pred             cccccccc--c-CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC----CCcEEEECCC
Confidence            22344444  2 23566777788888888876644322  11112234567999999997766543    4558888875


Q ss_pred             CCeeeeeeecccccCCCeEEEEE---cCCCCEEEEEeCC
Q 001352          565 EGAIKRTYQGLQLQHNSVSVVHF---DTAKDQILAAGDD  600 (1093)
Q Consensus       565 ~~~~~~~~~~~~~~~~~v~~v~~---~~~~~~l~~~~~d  600 (1093)
                      . +......... ......+++|   ++|++.|++++..
T Consensus       238 G-~~~~~~~~~~-~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         238 R-STTIIAQAEQ-GVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             C-CEEEEECGGG-TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             C-CEEEEEecCC-CCCCceEEEEcCCCCCCCEEEEECCC
Confidence            4 3322222211 1245789999   6778888776544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.96  E-value=1.3e-07  Score=96.53  Aligned_cols=238  Identities=10%  Similarity=0.054  Sum_probs=153.9

Q ss_pred             CCCCeeEEEEccCCCEEEEEe--CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce
Q 001352          802 SQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  879 (1093)
Q Consensus       802 ~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~  879 (1093)
                      +......++++++|..+++..  .+.+..++...................+++++ +++++++....+.+++++-.++..
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence            445568999999999776654  36666665543322222222234567899999 888887777777777766555554


Q ss_pred             eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCC
Q 001352          880 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET  958 (1093)
Q Consensus       880 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~  958 (1093)
                      +....+ .....++++.++++++++-.....+..++.......    .....+.    .....++++++|+++++ ..++
T Consensus        91 ~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~----~~~~~~~----~~p~~i~~~~~g~~~v~~~~~~  161 (260)
T d1rwia_          91 VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----VLPFTGL----NDPDGVAVDNSGNVYVTDTDNN  161 (260)
T ss_dssp             ECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE----ECCCCSC----CSCCEEEECTTCCEEEEEGGGT
T ss_pred             eeeeee-eeecccccccccceeEeeccccccccccccccceee----eeeeccc----CCcceeeecCCCCEeeeccccc
Confidence            444333 345789999999998887767777777777663311    1111221    14678999999998777 4667


Q ss_pred             eEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEE
Q 001352          959 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1038 (1093)
Q Consensus       959 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1038 (1093)
                      .|..++........ +..........+++.++|.++++....+.|..++....... .+.      .   ..--.|..++
T Consensus       162 ~i~~~d~~~~~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~------~---~~~~~P~~i~  230 (260)
T d1rwia_         162 RVVKLEAESNNQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP------F---TGLNTPLAVA  230 (260)
T ss_dssp             EEEEECTTTCCEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECC------C---CSCCCEEEEE
T ss_pred             cccccccccceeee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEc------c---CCCCCeEEEE
Confidence            89999977554332 23344566789999999999888877888888876554322 111      0   1112466788


Q ss_pred             eCCCCCCEEEEEeCCCcEEEEec
Q 001352         1039 AHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus      1039 ~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
                      +++ +++++++-..+++|+.++.
T Consensus       231 ~d~-~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         231 VDS-DRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             ECT-TCCEEEEEGGGTEEEEECC
T ss_pred             EeC-CCCEEEEECCCCEEEEEeC
Confidence            998 4777777666776665544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=8.9e-07  Score=98.18  Aligned_cols=260  Identities=10%  Similarity=0.066  Sum_probs=148.5

Q ss_pred             eeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc---
Q 001352          341 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---  417 (1093)
Q Consensus       341 ~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~---  417 (1093)
                      ..|.+++.+ +.. ..+|.|.+||+.+++.......                ..-....+....|||||++++....   
T Consensus        22 ~~W~~~~~~-~~~-~~~g~i~~~~~~~~~~~~l~~~----------------~~~~~~~~~~~~~SpD~~~vl~~~~~~~   83 (465)
T d1xfda1          22 AKWISDTEF-IYR-EQKGTVRLWNVETNTSTVLIEG----------------KKIESLRAIRYEISPDREYALFSYNVEP   83 (465)
T ss_dssp             CCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEEEECT----------------TTTTTTTCSEEEECTTSSEEEEEESCCC
T ss_pred             CEEeCCCcE-EEE-eCCCcEEEEECCCCCEEEEEcC----------------ccccccccceeEECCCCCeEEEEEcccc
Confidence            468888875 433 4578999999998875421110                0112346778899999999988743   


Q ss_pred             ------CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEee-cCCCCe-
Q 001352          418 ------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPV-  489 (1093)
Q Consensus       418 ------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-~h~~~v-  489 (1093)
                            .+.+.++|+.++.... +.........+....|||||+.  +|-.. ++.|.+.+..++..++... +....| 
T Consensus        84 ~~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~  159 (465)
T d1xfda1          84 IYQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIY  159 (465)
T ss_dssp             CSSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred             eeEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCce--EEEEe-cceEEEEecCCCceEEEecccCcceee
Confidence                  4678999999876422 1112233455677899999995  44333 6678888887776655432 222222 


Q ss_pred             ----------------EEeeecccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          490 ----------------YSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       490 ----------------~~~~~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                                      ..+.|  ++||++|+....| ..|..+.+....     ......+..+.+..-|..        
T Consensus       160 nG~~d~vyeee~~~~~~a~~W--SPDgk~iaf~~~D~s~V~~~~~~~~~-----~~~~p~~~~~~Yp~~G~~--------  224 (465)
T d1xfda1         160 NGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYT-----GSIYPTVKPYHYPKAGSE--------  224 (465)
T ss_dssp             EEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCS-----SSSSCCCEEEECCBTTSC--------
T ss_pred             ccccchhhhhhhccccceEEE--CCCCCeEEEEEecccccceeeccccc-----ccccceeeeeeccccCCC--------
Confidence                            23334  6677888876533 334444332110     001112223333222211        


Q ss_pred             CCceeEEEEeCCCCeeeeeeec---ccccCCCeEEEEEcCCCCEEEEEe-CC---CcEEEEECCCCceEEEEecCCCCCC
Q 001352          553 EGESFLVEWNESEGAIKRTYQG---LQLQHNSVSVVHFDTAKDQILAAG-DD---HVIKIWDMNKVQLLTTIDAGGGLPE  625 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~---~~~~~~~v~~v~~~~~~~~l~~~~-~d---g~i~iwd~~~~~~~~~~~~~~~~~~  625 (1093)
                      .....+.++|+.++........   ......-+..+.|+|+++.++... .+   ..+.++|..+|+....+..... ..
T Consensus       225 np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~-~w  303 (465)
T d1xfda1         225 NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE-AW  303 (465)
T ss_dssp             CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS-SC
T ss_pred             CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCC-ce
Confidence            1134578888877654322211   111123467889999987666533 22   3578899999987665543221 11


Q ss_pred             ----CceEEEecCCCEE
Q 001352          626 ----NPRICFNKNGTLL  638 (1093)
Q Consensus       626 ----v~~v~~s~~~~~l  638 (1093)
                          -....|++||+.+
T Consensus       304 v~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         304 LHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             CCCCCCCCEECTTSCSE
T ss_pred             EeccCCceeEccCCCee
Confidence                2346788888754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=1.7e-07  Score=96.36  Aligned_cols=229  Identities=16%  Similarity=0.107  Sum_probs=142.0

Q ss_pred             hhccCCCCceeeeecCCCceEEEEEccCC--cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352          330 TLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  407 (1093)
Q Consensus       330 ~l~~h~~~V~~~~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  407 (1093)
                      .+..+...+...+|||||++|+.+....+  .+.+.+..++....                    +..+...+....|||
T Consensus        33 ~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~sp   92 (269)
T d2hqsa1          33 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFSP   92 (269)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EECCSSCEEEEEECT
T ss_pred             EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------EeeeecccccceecC
Confidence            34445667889999999998655554444  35556666655432                    445778899999999


Q ss_pred             CCCEEEEEEcC-CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCc--EEEEECCCCceeEEeec
Q 001352          408 DGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEG  484 (1093)
Q Consensus       408 dg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~~~~~~~~~  484 (1093)
                      ||+.++..... +...++.......  .......+........+++++.. .+++...++.  |.+.++..+... .+..
T Consensus        93 dg~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~~~~-~~~~  168 (269)
T d2hqsa1          93 DGSKLAFALSKTGSLNLYVMDLASG--QIRQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGAPQ-RITW  168 (269)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTTC--CEEECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSCCE-ECCC
T ss_pred             CCCeeeEeeecCCccceeecccccc--cceeeeecccccccccccccccc-ceecccccCCceEeeeecccccce-eeec
Confidence            99999887543 2223333222221  11123345555666778888875 4555555554  555566555433 3333


Q ss_pred             CCCCeEEeeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001352          485 HGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  563 (1093)
Q Consensus       485 h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~  563 (1093)
                      +........++  +++..++..+. .+...+|......................|||||+.|+..+.. .+...|+++++
T Consensus       169 ~~~~~~~~~~s--pdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~-~~~~~l~~~~~  245 (269)
T d2hqsa1         169 EGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ-GMGSVLNLVST  245 (269)
T ss_dssp             SSSEEEEEEEC--TTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE-TTEEEEEEEET
T ss_pred             ccccccccccc--cccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC-CCCcEEEEEEC
Confidence            44445555564  45566665544 4555566555444444555555566788999999999877643 34678999999


Q ss_pred             CCCeeeeeeecccccCCCeEEEEEcC
Q 001352          564 SEGAIKRTYQGLQLQHNSVSVVHFDT  589 (1093)
Q Consensus       564 ~~~~~~~~~~~~~~~~~~v~~v~~~~  589 (1093)
                      ..+...+ +....   +.+...+|+|
T Consensus       246 dg~~~~~-lt~~~---g~~~~p~WSP  267 (269)
T d2hqsa1         246 DGRFKAR-LPATD---GQVKFPAWSP  267 (269)
T ss_dssp             TSCCEEE-CCCSS---SEEEEEEECC
T ss_pred             CCCCEEE-EeCCC---CcEEeEEeCC
Confidence            8776544 33333   5677888988

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.93  E-value=1.1e-07  Score=97.03  Aligned_cols=238  Identities=9%  Similarity=-0.028  Sum_probs=148.1

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  416 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~  416 (1093)
                      ....++++++|..+++..+..+.|..++..+......                   ..+-......++++++|.+.++..
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~gvav~~~g~i~v~d~   75 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTDF   75 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------------------CCCSCCSCCCEEECTTCCEEEEET
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------------------ccCCccCceEEEEcCCCCEEEeee
Confidence            5689999999985454445567777776654432211                   111123456789999999887776


Q ss_pred             cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecc
Q 001352          417 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  496 (1093)
Q Consensus       417 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~  496 (1093)
                      ..+.+++++-.++..+.   .. ........+++.++++  ++++-.....+..++...................+++.+
T Consensus        76 ~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~  149 (260)
T d1rwia_          76 NNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN  149 (260)
T ss_dssp             TTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT
T ss_pred             eeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceeeecC
Confidence            66667666655443222   11 2234578999999998  666666667777777554433221112223456777744


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc
Q 001352          497 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  576 (1093)
Q Consensus       497 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  576 (1093)
                        ++.++++...++.|..++.+.................+++.++|+++++...    .+.|..++...... ..+....
T Consensus       150 --~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~----~~~i~~~~~~~~~~-~~~~~~~  222 (260)
T d1rwia_         150 --SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTS-TVLPFTG  222 (260)
T ss_dssp             --TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TTEEEEECTTCSCC-EECCCCS
T ss_pred             --CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC----CCEEEEEeCCCCeE-EEEccCC
Confidence              5678888888899999987765544333334456788999999987776643    45688787654432 2222111


Q ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001352          577 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  608 (1093)
Q Consensus       577 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~  608 (1093)
                        ......++++++|+.+++-..++.|+.++.
T Consensus       223 --~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         223 --LNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             --CCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             --CCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence              245678999999887777666676665543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.92  E-value=2.4e-07  Score=97.03  Aligned_cols=241  Identities=12%  Similarity=0.135  Sum_probs=155.6

Q ss_pred             CeeEEEEccCCCEEEEEe--------CCeEEEEEccCceeEEEECCC----CCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001352          805 AVPCFALSKNDAYLFSAS--------GGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIY  872 (1093)
Q Consensus       805 ~v~~l~~s~dg~~la~~~--------dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~dg~i~iw  872 (1093)
                      ....++|.++|+++++..        +++|..||..++.........    ......++|.+ ++..|+++...+.|..+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence            356789999999887653        356888888877654443322    22456899999 78777778777788889


Q ss_pred             EcCCcceeeeccccc----CCeEEEEEeCCCCEEEEEeC---------------CCcEEEEeCCCCceeeeeeeecCCCc
Q 001352          873 NARSSEVISKLEGHS----KRVTGLVFSDALNILVSSGG---------------DAQIFVWDVDGWGIQTCRSLQTPDGV  933 (1093)
Q Consensus       873 d~~~~~~~~~l~~h~----~~V~~l~~s~dg~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~  933 (1093)
                      +...+..........    .....+++.++|++.++-..               +|.|..++.+. +..  .......  
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~--~~~~~~~--  172 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMI--QVDTAFQ--  172 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEE--EEEEEES--
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-cee--EeeCCcc--
Confidence            987554322111111    13577999999998887432               23344444332 211  1111111  


Q ss_pred             ccCCCCceEEEEccCCC----EEEEE--eCCeEEEEEcCCcceee------eeecCCCCCEEEEEEccCCCEEEEEeCCC
Q 001352          934 MTLAPSETHIQFHKDQT----RFLLV--HETHLAIYEAEELTCLK------QWFPISSVPISQATFSCDCRMVFTSFVDG 1001 (1093)
Q Consensus       934 ~~~~~~v~~~~~s~dg~----~l~~~--~d~~i~vwd~~~~~~~~------~~~~~h~~~v~~~~fs~dg~~l~t~~~dg 1001 (1093)
                           ....++|+|++.    .|.++  ..+.|..|++.....+.      .+...+......+++..+|++.++....+
T Consensus       173 -----~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g  247 (314)
T d1pjxa_         173 -----FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             -----SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             -----eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence                 245799999875    45443  56788888875432221      11112233467899999999988888889


Q ss_pred             cEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCC-EEEEEeCCCcEEEEecCCCCCC
Q 001352         1002 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT-QFAVGLTNGEVYVIEPNEPGDT 1067 (1093)
Q Consensus      1002 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~-~l~~~~~dg~v~~w~~~~~~~~ 1067 (1093)
                      .|.+||.+++.....+...    .      -.+.+++|.| |++ +++|.+..|.|...+....+.+
T Consensus       248 ~I~~~dp~~g~~~~~i~~p----~------~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~~G~~  303 (314)
T d1pjxa_         248 HIEVFGPDGGQPKMRIRCP----F------EKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRNGKK  303 (314)
T ss_dssp             EEEEECTTCBSCSEEEECS----S------SCEEEEEECT-TSSEEEEEETTTTEEEEEECSSCBCC
T ss_pred             EEEEEeCCCCEEEEEEECC----C------CCEEEEEEeC-CCCEEEEEECCCCcEEEEECCCCChh
Confidence            9999999988877666511    1      2345788998 465 6677778899999888776643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.89  E-value=1.1e-06  Score=90.53  Aligned_cols=244  Identities=11%  Similarity=0.100  Sum_probs=163.0

Q ss_pred             CeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEec---cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352          399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  475 (1093)
Q Consensus       399 ~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~---~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  475 (1093)
                      ....++++++|+.+++-..++.|++||.+ |+.+.......   +....-..+++.++....+++..+.++.|.+++ ..
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QY  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc-cc
Confidence            46899999999988887788899999976 44333221110   112234556766665543444455667888888 46


Q ss_pred             CceeEEeec-CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe--cCCCCceEEEEEccCCCEEEEEecCC
Q 001352          476 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       476 ~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      |+....+.. .......+++  .+++.++++....+.+.+++.+. +....+  ..+......+++.++++.+++...  
T Consensus       102 g~~~~~~~~~~~~~p~~~av--d~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~--  176 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTV--DNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR--  176 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEE--CTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGG--
T ss_pred             ccceeecCCCcccccceecc--ccCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeecc--
Confidence            777666632 3445566776  44667777777778888887543 333333  233456788999999987776554  


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEE
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  631 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  631 (1093)
                        .+.|++||.. |+.+..+.. .........+++.++|+.+++-. .++.|.+|+. +|+.+..+...........+++
T Consensus       177 --~~~V~~~d~~-G~~~~~~g~-~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav  251 (279)
T d1q7fa_         177 --AHCVKVFNYE-GQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL  251 (279)
T ss_dssp             --GTEEEEEETT-CCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred             --ccceeeeecC-Cceeeeecc-cccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEE
Confidence              5679999964 566655532 21235678899999998777644 3557999984 6888777765443345678999


Q ss_pred             ecCCCEEEEEECCCeEEEEEcCCC
Q 001352          632 NKNGTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       632 s~~~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      .++|.+ +++..++.|++|+....
T Consensus       252 ~~dG~l-~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         252 MDDGSV-VLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             ETTTEE-EEEETTTEEEEEECSCC
T ss_pred             eCCCcE-EEEeCCCeEEEEEeeee
Confidence            999975 55667899999998754

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.88  E-value=1.7e-07  Score=98.11  Aligned_cols=236  Identities=10%  Similarity=0.034  Sum_probs=148.6

Q ss_pred             CCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce-e
Q 001352          803 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-I  880 (1093)
Q Consensus       803 ~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~-~  880 (1093)
                      ...+..++++|||+++++.. +++|..|+... + ...+......+.+++|++ +++++++...++.+..|+...... .
T Consensus        27 ~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          27 NTFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccce
Confidence            34678999999999988876 68888887553 3 333444567899999999 889999988888888888765321 1


Q ss_pred             eec--ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecC--CCcccCCCCceEEEEccCCCEEEE--
Q 001352          881 SKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLL--  954 (1093)
Q Consensus       881 ~~l--~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~l~~--  954 (1093)
                      ..+  .........+++.++|+++++.+.++.+..++..++.......-...  ............+.+  ++..+..  
T Consensus       104 ~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~--~~~~l~~~~  181 (302)
T d2p4oa1         104 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR--FGNFLYVSN  181 (302)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--ETTEEEEEE
T ss_pred             eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccc--cCCceeeec
Confidence            122  12445678899999999999988899888888887643321111100  011110012344444  4555555  


Q ss_pred             EeCCeEEEEEcCCcceeeee-ecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccc
Q 001352          955 VHETHLAIYEAEELTCLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1033 (1093)
Q Consensus       955 ~~d~~i~vwd~~~~~~~~~~-~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1033 (1093)
                      ...+.|..++.......... ...+......++|++||.++++...++.|..++.... ........        .....
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~-~~~~~~~~--------~~~~~  252 (302)
T d2p4oa1         182 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-TTIIAQAE--------QGVIG  252 (302)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-EEEEECGG--------GTCTT
T ss_pred             CCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC-EEEEEecC--------CCCCC
Confidence            45678888887654332211 1112334567999999998888888899988877643 22111100        11124


Q ss_pred             eeEEEe---CCCCCCEEEEEeCC
Q 001352         1034 PHAIAA---HPLKPTQFAVGLTN 1053 (1093)
Q Consensus      1034 ~~~~~~---~p~d~~~l~~~~~d 1053 (1093)
                      +.+++|   .| |++.|.+++..
T Consensus       253 pt~vafg~~~~-D~~~Lyvtt~~  274 (302)
T d2p4oa1         253 STAVAFGQTEG-DCTAIYVVTNG  274 (302)
T ss_dssp             EEEEEECCSTT-TTTEEEEEECT
T ss_pred             ceEEEEcCCCC-CCCEEEEECCC
Confidence            567888   44 56766655543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.88  E-value=7e-07  Score=93.45  Aligned_cols=246  Identities=14%  Similarity=0.091  Sum_probs=155.1

Q ss_pred             CceeeeecCCCceEEEEEcc-------CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCC
Q 001352          337 SPMSMDFHPVQHTLLLVGTN-------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  409 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg  409 (1093)
                      ....++|.|||+ ++++...       +|+|..||..++.......-               ......+....++|.++|
T Consensus        19 g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---------------~~~~~~g~P~Gl~~~~dg   82 (314)
T d1pjxa_          19 GAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------EVNGYGGIPAGCQCDRDA   82 (314)
T ss_dssp             TCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECC---------------EETTEECCEEEEEECSSS
T ss_pred             CCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECC---------------ccccCCCcceeEEEeCCC
Confidence            567889999998 4554322       46799999988865432100               011112346789999999


Q ss_pred             CEEEEEEcCCEEEEEEccCCCcccceEEecccc-ccEEEEEeeCCCCcEEEEEEcC---------------CCcEEEEEC
Q 001352          410 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---------------DKTIKVWDA  473 (1093)
Q Consensus       410 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~---------------d~~i~vwd~  473 (1093)
                      ..|+++...+.|...+..++..........+.. ...+.+++.++|.  +.+|-..               +|.|..++.
T Consensus        83 ~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~  160 (314)
T d1pjxa_          83 NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFTT  160 (314)
T ss_dssp             SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred             CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEee
Confidence            988888877788999987653211100111111 1357899999998  5665321               234444442


Q ss_pred             CCCceeEEeecCCCCeEEeeecccCCc---cEEEEEecCCeEEEEEcCCCCceE------EecCC-CCceEEEEEccCCC
Q 001352          474 VTGSRTYSFEGHGAPVYSLCPHAKENI---HFIFSISVDGKIKAWLYDSLGARV------DYDAP-GLGCTRMAYSANGR  543 (1093)
Q Consensus       474 ~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~------~~~~~-~~~v~~~~~s~d~~  543 (1093)
                       .|+..... ..-...+.++|++..++   .+.++-+..+.|..|++.......      .+... ......+++..+|+
T Consensus       161 -dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn  238 (314)
T d1pjxa_         161 -DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             -TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred             -cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc
Confidence             34433322 23334467788776543   244555778889999876544332      11111 22456899999999


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECC
Q 001352          544 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMN  609 (1093)
Q Consensus       544 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~dg~i~iwd~~  609 (1093)
                      ..++...    .+.|.+||..+++.+..+....   ....+++|.|+++.|+ +.+.+|.|...++.
T Consensus       239 lyVa~~~----~g~I~~~dp~~g~~~~~i~~p~---~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         239 LLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEEEcC----CCEEEEEeCCCCEEEEEEECCC---CCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            8776543    5569999999888777666544   5688999999987654 45677888877764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.87  E-value=1.9e-06  Score=88.62  Aligned_cols=241  Identities=12%  Similarity=0.133  Sum_probs=161.6

Q ss_pred             ceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCC--CCCCCCeeEEEEccC
Q 001352          737 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD--SNSQEAVPCFALSKN  814 (1093)
Q Consensus       737 ~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~s~d  814 (1093)
                      ....++++++|+.+++-..+..|++|+....-                       +..+....  .+.......+++.++
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~-----------------------~~~~~~~~~~~~~~~~p~~~~~~~~   80 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF-----------------------KFQFGECGKRDSQLLYPNRVAVVRN   80 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSCE-----------------------EEEECCBSSSTTCBSSEEEEEEETT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCCE-----------------------EEEecccCCCccccccccccccccc
Confidence            45789999999977776677888888643210                       11110000  012223345665555


Q ss_pred             C-CEEEEEe--CCeEEEEEccCceeEEEECC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec--ccccC
Q 001352          815 D-AYLFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL--EGHSK  888 (1093)
Q Consensus       815 g-~~la~~~--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l--~~h~~  888 (1093)
                      . .++++..  ++.|..++. .++....+.. .......+++.+ +++++++....+.+.+++.. ++.+..+  ..+..
T Consensus        81 ~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~  157 (279)
T d1q7fa_          81 SGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLE  157 (279)
T ss_dssp             TTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCS
T ss_pred             ccccceeccCCccccccccc-cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cceeeccccccccc
Confidence            4 4444443  366777775 4666666643 345678999999 88888888888889998865 5666554  34667


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcC
Q 001352          889 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAE  966 (1093)
Q Consensus       889 ~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~  966 (1093)
                      ....+++.++++.+++....+.|++||........   +. ..+..   .....+++.++|+++++-  .+..|.+|+. 
T Consensus       158 ~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~---~g-~~g~~---~~P~giavD~~G~i~Vad~~~~~~v~~f~~-  229 (279)
T d1q7fa_         158 FPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQ---IG-GEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQ-  229 (279)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEE---ES-CTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECT-
T ss_pred             ccceeeeccceeEEeeeccccceeeeecCCceeee---ec-ccccc---cCCcccccccCCeEEEEECCCCcEEEEECC-
Confidence            78899999999999988889999999987632111   11 12222   257889999999988773  3457999984 


Q ss_pred             CcceeeeeecC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001352          967 ELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1012 (1093)
Q Consensus       967 ~~~~~~~~~~~-h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~ 1012 (1093)
                      +|+.+..+... .......+++.+||.+++ +..+.+|++|......
T Consensus       230 ~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         230 DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            57776665432 244688999999997655 5678999999987653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.77  E-value=3e-06  Score=88.90  Aligned_cols=232  Identities=9%  Similarity=0.079  Sum_probs=148.0

Q ss_pred             CCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCC----CeEEEEEcCCcc
Q 001352          804 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSE  878 (1093)
Q Consensus       804 ~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~i~iwd~~~~~  878 (1093)
                      .....++|.++|+++++-. +++|..|+..+++....+.........+++++ +|+++++...+    +.+...+..++.
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCce
Confidence            3456899999998666543 68899999887776666665666788999999 88888765432    345555555544


Q ss_pred             eeeeccc--ccCCeEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCC
Q 001352          879 VISKLEG--HSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  950 (1093)
Q Consensus       879 ~~~~l~~--h~~~V~~l~~s~dg~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~  950 (1093)
                      .......  -......+++.++|++.++....      +.+..++.+......  .....       .....++|+||++
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~--~~~~~-------~~pnGia~s~dg~  189 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEK  189 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSS
T ss_pred             eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEE--Eeecc-------ceeeeeeeccccc
Confidence            4333321  12346789999999987764321      234444444432111  11111       1356799999999


Q ss_pred             EEEEE--eCCeEEEEEcCCc-ceeee------eecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEecccc
Q 001352          951 RFLLV--HETHLAIYEAEEL-TCLKQ------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1021 (1093)
Q Consensus       951 ~l~~~--~d~~i~vwd~~~~-~~~~~------~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~ 1021 (1093)
                      .|.++  ..+.|..|++... .....      ...........+++.++|.+.++....+.|.+|+- .|+.+.++....
T Consensus       190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~  268 (319)
T d2dg1a1         190 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG  268 (319)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT
T ss_pred             eEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCC
Confidence            77664  5688999987632 11111      01111234678999999999898888999999995 688888886333


Q ss_pred             ccCCCCCCCccceeEEEeCCCCCCEEEEEe
Q 001352         1022 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1051 (1093)
Q Consensus      1022 ~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~ 1051 (1093)
                      ..+    .....+.+++|.|. ...+.+..
T Consensus       269 ~~~----~~~~~~~~~~~~~~-~~~~~~t~  293 (319)
T d2dg1a1         269 RDE----GHMLRSTHPQFIPG-TNQLIICS  293 (319)
T ss_dssp             GGG----TCSCBCCEEEECTT-SCEEEEEE
T ss_pred             cCC----CcCceeeeEEEeCC-CCEEEEEc
Confidence            211    12234567889884 45555444

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.63  E-value=1.8e-05  Score=82.68  Aligned_cols=232  Identities=8%  Similarity=-0.010  Sum_probs=146.8

Q ss_pred             CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  416 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~  416 (1093)
                      .+..++|.++|+ |.++-...+.|..|+..+++....                   ..........++|++||+++++..
T Consensus        41 ~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~va~~  100 (319)
T d2dg1a1          41 QLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFVCYL  100 (319)
T ss_dssp             CEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEEEEC
T ss_pred             CcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEE-------------------EeCCCCCeeEEEECCCCCEEEEec
Confidence            457899999998 778877889999999888764432                   223456788999999999887764


Q ss_pred             c----CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC------CCcEEEEECCCCceeEEeecCC
Q 001352          417 S----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHG  486 (1093)
Q Consensus       417 ~----d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~~~~~~~~~~~h~  486 (1093)
                      .    .+.+...+..++.... ...-..-......+++.++|.  +.++...      .+.+..++.. ++.+..+...-
T Consensus       101 ~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~  176 (319)
T d2dg1a1         101 GDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNI  176 (319)
T ss_dssp             TTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEE
T ss_pred             CCCccceeEEEEcCCCceeee-eccCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEecc-cceeEEEeecc
Confidence            3    2345555555543222 111011233578899999998  5555332      1235555543 33333333333


Q ss_pred             CCeEEeeecccCCccE-EEEEecCCeEEEEEcCCCCceE--------EecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001352          487 APVYSLCPHAKENIHF-IFSISVDGKIKAWLYDSLGARV--------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  557 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~--------~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~  557 (1093)
                      ...+.++|++  +++. .++-+..+.|..|+++......        ...........+++.++|++.++...    .+.
T Consensus       177 ~~pnGia~s~--dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~----~g~  250 (319)
T d2dg1a1         177 SVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG----QGR  250 (319)
T ss_dssp             SSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----TTE
T ss_pred             ceeeeeeecc--ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC----CCE
Confidence            3456788854  5554 4666778899999987543211        11112224568999999997777653    567


Q ss_pred             EEEEeCCCCeeeeeeeccc---ccCCCeEEEEEcCCCCEEEEEeC
Q 001352          558 LVEWNESEGAIKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGD  599 (1093)
Q Consensus       558 i~iwd~~~~~~~~~~~~~~---~~~~~v~~v~~~~~~~~l~~~~~  599 (1093)
                      |.++|. .|+.+..+....   .+...+.+++|.+++..+++...
T Consensus       251 V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         251 VLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            999996 688877775432   11235789999998887777553

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.59  E-value=2.9e-06  Score=87.45  Aligned_cols=237  Identities=11%  Similarity=0.032  Sum_probs=129.3

Q ss_pred             eeecCC--CceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc-
Q 001352          341 MDFHPV--QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-  417 (1093)
Q Consensus       341 ~~~spd--g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~-  417 (1093)
                      ...|||  |++++.+.  +|.|.+.|+.+++...                    +..+.+.+...+|||||++||.... 
T Consensus         4 ~~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~   61 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMR   61 (281)
T ss_dssp             CCEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEE
T ss_pred             cccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEee
Confidence            356899  99866664  4678888999887653                    5567788999999999999997643 


Q ss_pred             C-----CEEEEEEccCCCcccceE---EeccccccEEEEEeeCCCCcEEEEEEcC------CCcEEEEECCCCceeEEee
Q 001352          418 K-----HIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFE  483 (1093)
Q Consensus       418 d-----~~i~iwd~~~~~~~~~~~---~~~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~~~~~~~~~~  483 (1093)
                      +     ..|.+++..+++..+...   ............+|+|||+  .++....      ...+...+...+...... 
T Consensus        62 ~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  138 (281)
T d1k32a2          62 GSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPLN-  138 (281)
T ss_dssp             STTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEECC-
T ss_pred             CCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC--EEEEEEccCCCccceeeeeecCCCceeEEec-
Confidence            1     247777877775432100   0112223456789999999  4444321      223455565544433221 


Q ss_pred             cCCCCeEEeeecccCCccEEEEEecCC-----------eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          484 GHGAPVYSLCPHAKENIHFIFSISVDG-----------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                        ........+  ..++..++......           .......... ................++++  .++... ..
T Consensus       139 --~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~  210 (281)
T d1k32a2         139 --LGPATHILF--ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG-AFKKIVDMSTHVSSPVIVGH--RIYFIT-DI  210 (281)
T ss_dssp             --SCSCSEEEE--ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT-EEEEEECCSSCCEEEEEETT--EEEEEE-CT
T ss_pred             --CCccceeee--cCCCeEEEeeccccceeeeeccCCcceeeeecccc-ceeeccCCccccceeeeecc--ccceec-cc
Confidence              111111111  12222232222111           1111111111 11122222233344445554  333332 23


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEE
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT  616 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  616 (1093)
                      .+...|+++|+.++...+......   ..  ...|+|||+.|+.. .++.|+++|+.+++....
T Consensus       211 ~~~~~l~~~d~~g~~~~~lt~~~~---~~--~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         211 DGFGQIYSTDLDGKDLRKHTSFTD---YY--PRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             TSSCEEEEEETTSCSCEECCCCCS---SC--EEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred             ccccceEEEeCCCCceEEeecCCC---cc--cccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence            446679999998776554332222   22  34689999988764 468899999988876543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.38  E-value=8.3e-06  Score=83.81  Aligned_cols=199  Identities=13%  Similarity=0.116  Sum_probs=119.0

Q ss_pred             EEccC--CCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeC-C-----CeEEEEEcCCcceee
Q 001352          810 ALSKN--DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-D-----STILIYNARSSEVIS  881 (1093)
Q Consensus       810 ~~s~d--g~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-d-----g~i~iwd~~~~~~~~  881 (1093)
                      ..|||  |+.+|..++|.|.+.|+.+++. +.+..+...+...+||| ||+.||.... +     ..|.+++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGST-RKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCE-EEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCE-EEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            46899  9999999999999999998775 45666777889999999 8888886532 2     247888888776543


Q ss_pred             ecc------cccCCeEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCceeee--------------eeeecCCCcc-
Q 001352          882 KLE------GHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTC--------------RSLQTPDGVM-  934 (1093)
Q Consensus       882 ~l~------~h~~~V~~l~~s~dg~~l~s~s~d------g~i~iwd~~~~~~~~~--------------~~~~~~~~~~-  934 (1093)
                      ...      .........+|+|||+.|+.....      ..+...+...+.....              ..+....... 
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELP  162 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCT
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccc
Confidence            221      122345678999999998875332      1244444443321110              0000000000 


Q ss_pred             --------------------------cCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcceeeeeecCCCCCEEEEE
Q 001352          935 --------------------------TLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQAT  986 (1093)
Q Consensus       935 --------------------------~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~  986 (1093)
                                                ..........++++..+....  ....|.++|+.+++.... .......+  ..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l-t~~~~~~~--~~  239 (281)
T d1k32a2         163 HWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKH-TSFTDYYP--RH  239 (281)
T ss_dssp             TSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEEC-CCCCSSCE--EE
T ss_pred             eeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceEEe-ecCCCccc--cc
Confidence                                      000112223334432222221  223688888877665432 22223333  46


Q ss_pred             EccCCCEEEEEeCCCcEEEEEcCCCceE
Q 001352          987 FSCDCRMVFTSFVDGTLSIHEASNLEVQ 1014 (1093)
Q Consensus       987 fs~dg~~l~t~~~dg~v~vwd~~~~~~~ 1014 (1093)
                      |||||+.|+.. .++.|.++|+.+++..
T Consensus       240 ~SpDG~~I~f~-~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         240 LNTDGRRILFS-KGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             EEESSSCEEEE-ETTEEEEECTTTCCEE
T ss_pred             CcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence            89999998864 4788999999988765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.31  E-value=0.00025  Score=72.54  Aligned_cols=216  Identities=9%  Similarity=0.010  Sum_probs=141.8

Q ss_pred             EEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001352          447 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY  526 (1093)
Q Consensus       447 ~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  526 (1093)
                      ...|.+.... ++.+--..+.|..||.++++.. .+. ....+.++++.  .++.++++ +.+ .+..+|..+++.....
T Consensus        22 gp~wd~~~~~-l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~--~dg~l~va-~~~-gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          22 GPTFDPASGT-AWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKI--SDSKQLIA-SDD-GLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEETTTTE-EEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEE--ETTEEEEE-ETT-EEEEEETTTCCEEEEE
T ss_pred             CCeEECCCCE-EEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEe--cCCCEEEE-EeC-ccEEeecccceeeEEe
Confidence            4567775554 3445556788999998888653 232 34567777764  45555554 444 5888998887755443


Q ss_pred             cCC----CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE-EeCCC
Q 001352          527 DAP----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH  601 (1093)
Q Consensus       527 ~~~----~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg  601 (1093)
                      ...    ...+..+.+.|+|++.++..........-.+|....++........    .....++|+++++.++. -+..+
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~----~~~Ng~~~s~d~~~l~~~dt~~~  170 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI----SIPNSICFSPDGTTGYFVDTKVN  170 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE----SSEEEEEECTTSCEEEEEETTTC
T ss_pred             eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc----CCcceeeecCCCceEEEeecccc
Confidence            322    2357889999999987765433222233455666667665555443    35678999999987655 55678


Q ss_pred             cEEEEECCCC------ceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeec
Q 001352          602 VIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN  674 (1093)
Q Consensus       602 ~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~  674 (1093)
                      .|+.+++...      +................+++..+|++.++....+.|..|+. .++.+..+..+...+++++|.
T Consensus       171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred             eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEe
Confidence            8988887531      12222222222234568999999998888888899999995 577777777776778888886

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.26  E-value=0.00023  Score=72.90  Aligned_cols=224  Identities=14%  Similarity=0.061  Sum_probs=146.6

Q ss_pred             eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC
Q 001352          339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  418 (1093)
Q Consensus       339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d  418 (1093)
                      .+..|++.+..|..+--..+.|.-||..+++....                     .....+.++++.++|.++++ +.+
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~---------------------~~~~~~~~i~~~~dg~l~va-~~~   78 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVH---------------------ALPFMGSALAKISDSKQLIA-SDD   78 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE---------------------ECSSCEEEEEEEETTEEEEE-ETT
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEE---------------------ECCCCcEEEEEecCCCEEEE-EeC
Confidence            45678875555677766778999999998864321                     12356889999999977765 455


Q ss_pred             CEEEEEEccCCCcccceEEecc--ccccEEEEEeeCCCCcEEEEEEcC----CCcEEEEECCCCceeEEeecCCCCeEEe
Q 001352          419 HIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTGSRTYSFEGHGAPVYSL  492 (1093)
Q Consensus       419 ~~i~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~l~l~s~~~----d~~i~vwd~~~~~~~~~~~~h~~~v~~~  492 (1093)
                       -+.++|..+++... +.....  ....++++.+.++|.  +.++...    .+.-.+|.+..++....+.. -...+.+
T Consensus        79 -gl~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~  153 (295)
T d2ghsa1          79 -GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSI  153 (295)
T ss_dssp             -EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEE
T ss_pred             -ccEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEeec-cCCccee
Confidence             49999999886321 111111  223688999999998  4444322    23456677677765544432 2345667


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCC------ceE--EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352          493 CPHAKENIHFIFSISVDGKIKAWLYDSLG------ARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  564 (1093)
Q Consensus       493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~--~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~  564 (1093)
                      ++++..+ .++++-+..+.|..++++...      ...  ...........+++..+|++.++...    .+.|..||. 
T Consensus       154 ~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~----~g~V~~~dp-  227 (295)
T d2ghsa1         154 CFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDRYDT-  227 (295)
T ss_dssp             EECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEEECT-
T ss_pred             eecCCCc-eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC----CCceEEecC-
Confidence            7754322 355666778889999875422      111  22334456788999999987776543    456999995 


Q ss_pred             CCeeeeeeecccccCCCeEEEEEc-CCCCEEEEEe
Q 001352          565 EGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG  598 (1093)
Q Consensus       565 ~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~~  598 (1093)
                      .|+.+..+.-..   ..+++++|. ++.+.|++.+
T Consensus       228 ~G~~~~~i~lP~---~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         228 DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEE
T ss_pred             CCcEeeEecCCC---CceEEEEEeCCCCCEEEEEE
Confidence            688888887654   568999995 6767676543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.94  E-value=0.00094  Score=71.59  Aligned_cols=285  Identities=8%  Similarity=-0.035  Sum_probs=144.4

Q ss_pred             CceeeeecCCCceEEEEEccC-----C------cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNV-----G------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  405 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~d-----g------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  405 (1093)
                      .+.......||+ +++.|+.+     +      .+.+||..++.-....                .....|.......++
T Consensus        21 ~~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~   83 (387)
T d1k3ia3          21 PAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISM   83 (387)
T ss_dssp             CSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEE
T ss_pred             ccEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC----------------CCCCCcccceeEEEE
Confidence            444555667887 56666642     1      2678988887543210                112234444456788


Q ss_pred             CCCCCEEEEEEcC-CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC------CcEEEEECCCCce
Q 001352          406 SPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVTGSR  478 (1093)
Q Consensus       406 s~dg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~~~~~  478 (1093)
                      .+||++++.|+.+ ..+.+||..++.-.. ...+. ....-..++..+||+  +++.|+.+      ..+.+||..+.+-
T Consensus        84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~-~~r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3          84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQ-VARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             CTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCS-SCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ecCCcEEEeecCCCcceeEecCccCcccc-ccccc-ccccccceeeecCCc--eeeeccccccccccceeeeecCCCCce
Confidence            9999999998655 579999998764221 11111 111224567788998  67777643      3689999888754


Q ss_pred             eEEeec---------CCCCe----EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--C------CCceEEEE
Q 001352          479 TYSFEG---------HGAPV----YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--P------GLGCTRMA  537 (1093)
Q Consensus       479 ~~~~~~---------h~~~v----~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~------~~~v~~~~  537 (1093)
                      ...-..         +...+    ....+ ...++..++.++..+.+.+++..+.........  .      ...-.++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (387)
T d1k3ia3         160 TSLPNAKVNPMLTADKQGLYRSDNHAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM  238 (387)
T ss_dssp             EEETTSCSGGGCCCCTTGGGTTTCSCCEE-ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred             eecCCCcccccccccccceeeccceeEEE-EeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence            321100         00000    00001 122455666666666666666555432221100  0      00112222


Q ss_pred             E-ccCCCEEEEEecCCCC----ceeEEEEeCC---CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC---------
Q 001352          538 Y-SANGRRLFSCGTSKEG----ESFLVEWNES---EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------  600 (1093)
Q Consensus       538 ~-s~d~~~l~~~~~~~~~----~~~i~iwd~~---~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d---------  600 (1093)
                      + ..+++.++.++.....    .....+.+..   .................-.+....++++.+++|+.+         
T Consensus       239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~  318 (387)
T d1k3ia3         239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST  318 (387)
T ss_dssp             EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred             eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence            2 3467777776643211    1122223222   111111111100001123345566888888887743         


Q ss_pred             --CcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC
Q 001352          601 --HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  643 (1093)
Q Consensus       601 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  643 (1093)
                        .++.+||..+.+....-........-....+.+||+.++.|+.
T Consensus       319 ~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             EeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence              1478899988765433222211111123446789999999874

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=0.013  Score=57.85  Aligned_cols=242  Identities=11%  Similarity=-0.000  Sum_probs=150.1

Q ss_pred             CCEEEEEEcCCEEEEEEccCCCcc--cceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC
Q 001352          409 GSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  486 (1093)
Q Consensus       409 g~~las~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~  486 (1093)
                      |.+|+.+.. +.|+-.+++.....  .....+..+...+..++|...++. ++.+-..++.|+..++..+.....+....
T Consensus         1 ~~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~   78 (263)
T d1npea_           1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL   78 (263)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred             CCEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE-EEEEECCCCeEEEEEcccCCcEEEEEecc
Confidence            345555543 35777777654322  112224445556888999988775 44555667889998987665554454444


Q ss_pred             CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352          487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  566 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~  566 (1093)
                      ..+..+++.+..+ .+.++-...+.|.+.+++.................+++.|...+++...... ....|..-++...
T Consensus        79 ~~p~~iAvD~~~~-~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~-~~~~I~r~~~dG~  156 (263)
T d1npea_          79 GSPEGIALDHLGR-TIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT  156 (263)
T ss_dssp             CCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC
T ss_pred             ccccEEEEeccCC-eEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC-CCcEEEEecCCCC
Confidence            5678888865432 3445556678999999987665554444445788999999888777654322 2334555565544


Q ss_pred             eeeeeeecccccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352          567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  645 (1093)
Q Consensus       567 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  645 (1093)
                      .........   -.....+++.+.++.|+.+ ...+.|...++........+....   ....+++. ++.+..+-...+
T Consensus       157 ~~~~i~~~~---~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~-~~~lYwtd~~~~  229 (263)
T d1npea_         157 NRRILAQDN---LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY-GKNLYYTDWKTN  229 (263)
T ss_dssp             CCEEEECTT---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE-TTEEEEEETTTT
T ss_pred             Cceeeeeec---ccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC---CcEEEEEE-CCEEEEEECCCC
Confidence            333222221   2456889999888888665 467889999987665544444322   23467765 343444444668


Q ss_pred             eEEEEEcCCCceeeec
Q 001352          646 RIKILETPESNSVDAA  661 (1093)
Q Consensus       646 ~i~iw~~~~~~~~~~~  661 (1093)
                      .|...+..+++.....
T Consensus       230 ~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         230 SVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCccceEE
Confidence            8888888877665443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.82  E-value=0.004  Score=69.90  Aligned_cols=378  Identities=11%  Similarity=0.067  Sum_probs=192.1

Q ss_pred             EEEEEcCCCcEEEEECCCCceeEEeecCCC----------Ce-EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001352          458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA----------PV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY  526 (1093)
Q Consensus       458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~----------~v-~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  526 (1093)
                      .++.++.++.|.-+|.++|+.+-++.....          .+ ..+.+  .  ...++.++.|+.+...|..+++.....
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~--~--~~~v~~~t~~g~l~alda~tG~~~W~~  154 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--W--KGKVYVGAWDGRLIALDAATGKEVWHQ  154 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--E--TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceE--E--CCcEEEEecccceeeeccccccceecc
Confidence            356667788899999999999887642110          01 11111  1  136778888999999999998887655


Q ss_pred             cCCCCce--EEEEEcc--CCCEEEEEecC--CCCceeEEEEeCCCCeeeeeeeccccc----------------------
Q 001352          527 DAPGLGC--TRMAYSA--NGRRLFSCGTS--KEGESFLVEWNESEGAIKRTYQGLQLQ----------------------  578 (1093)
Q Consensus       527 ~~~~~~v--~~~~~s~--d~~~l~~~~~~--~~~~~~i~iwd~~~~~~~~~~~~~~~~----------------------  578 (1093)
                      .......  ..+.-.|  -+..++++...  ....+.|+.+|..+|+.+-.+......                      
T Consensus       155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~  234 (573)
T d1kb0a2         155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK  234 (573)
T ss_dssp             ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred             cCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence            4321110  0111111  12334443321  223567999999999987665332100                      


Q ss_pred             ------CCCe-EEEEEcCCCCEEEEEeC-------------------CCcEEEEECCCCceEEEEecCCCC-------CC
Q 001352          579 ------HNSV-SVVHFDTAKDQILAAGD-------------------DHVIKIWDMNKVQLLTTIDAGGGL-------PE  625 (1093)
Q Consensus       579 ------~~~v-~~v~~~~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~-------~~  625 (1093)
                            ...+ ...++.++...++.+..                   ...|.-.|.++++.....+...+.       ..
T Consensus       235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~  314 (573)
T d1kb0a2         235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP  314 (573)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence                  0111 23456666666654321                   224677788888887666543211       11


Q ss_pred             CceEEEecCC---CEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccc
Q 001352          626 NPRICFNKNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  702 (1093)
Q Consensus       626 v~~v~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  702 (1093)
                      ........++   ..++.++.+|.+.++|..+++.+........... ..+...                      +..+
T Consensus       315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~-~~~~~~----------------------~~~~  371 (573)
T d1kb0a2         315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA-SGYDKH----------------------GKPI  371 (573)
T ss_dssp             CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE-EEECTT----------------------SCEE
T ss_pred             eeecceecCCCceeeeeeccccceeEEeccccccccccccccccccc-cccccc----------------------ccee
Confidence            1122223333   3567788899999999999987765442211110 000000                      0000


Q ss_pred             eeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCc
Q 001352          703 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  782 (1093)
Q Consensus       703 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  782 (1093)
                      ...           .. ..........+.......-...+++|+...++....+....++.............       
T Consensus       372 ~~~-----------~~-~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~-------  432 (573)
T d1kb0a2         372 GIA-----------AA-RDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPG-------  432 (573)
T ss_dssp             ECG-----------GG-GCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTT-------
T ss_pred             eee-----------ec-cccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCC-------
Confidence            000           00 00000000111111111122457888888888777776555543322111000000       


Q ss_pred             ccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCC-eEEEEEcCCCCCEEE
Q 001352          783 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIA  861 (1093)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~la  861 (1093)
                        .+..+.            ....  ..+ +++.-.....-|.+.-||+.+|+.+.+....... -..++.   .+.+|+
T Consensus       433 --~~~~g~------------~~~~--~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lst---agglVF  492 (573)
T d1kb0a2         433 --KPQSGT------------GWNT--AKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT---AGNVVF  492 (573)
T ss_dssp             --STTGGG------------TCCC--CEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE---TTTEEE
T ss_pred             --cccccc------------cccc--ccc-cccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCceEEE---cCCEEE
Confidence              000000            0000  000 0000000001257888999999988776533221 122333   455888


Q ss_pred             EEeCCCeEEEEEcCCcceeeeccc----ccCCeEEEEEeCCCC-EEEE
Q 001352          862 IGMDDSTILIYNARSSEVISKLEG----HSKRVTGLVFSDALN-ILVS  904 (1093)
Q Consensus       862 sg~~dg~i~iwd~~~~~~~~~l~~----h~~~V~~l~~s~dg~-~l~s  904 (1093)
                      +|+.||.++.+|..+|+.+..+.-    +..+   +.|..||+ +++.
T Consensus       493 ~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~GkQYv~v  537 (573)
T d1kb0a2         493 QGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGRQYVSV  537 (573)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEE
T ss_pred             EECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEEEEEE
Confidence            899999999999999999987753    2233   45566886 4443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.81  E-value=0.01  Score=66.22  Aligned_cols=198  Identities=12%  Similarity=0.034  Sum_probs=115.3

Q ss_pred             EEEEcCCCcEEEEECC-CCceeEEeecCCC----Ce-------EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001352          459 VITCGDDKTIKVWDAV-TGSRTYSFEGHGA----PV-------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY  526 (1093)
Q Consensus       459 l~s~~~d~~i~vwd~~-~~~~~~~~~~h~~----~v-------~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  526 (1093)
                      +++.+.++.|...|.. +|+.+-++.....    ..       +.+++.    +..++.++.||.+...|.++++.....
T Consensus        66 yv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~~~~g~l~alda~tG~~~w~~  141 (571)
T d2ad6a1          66 YVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG----AGQIVKKQANGHLLALDAKTGKINWEV  141 (571)
T ss_dssp             EEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee----CCeEEEEeCCCcEEeeehhhhhhhccc
Confidence            3333346778888874 6888877642110    00       112221    236888899999999999999887765


Q ss_pred             cCCCC----ceEEEEEccCCCEEEEEec-CCCCceeEEEEeCCCCeeeeeeecccc------------------------
Q 001352          527 DAPGL----GCTRMAYSANGRRLFSCGT-SKEGESFLVEWNESEGAIKRTYQGLQL------------------------  577 (1093)
Q Consensus       527 ~~~~~----~v~~~~~s~d~~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~------------------------  577 (1093)
                      .....    .+++--.-.++..++..+. .....+.|+-+|..+|+.+-.+.....                        
T Consensus       142 ~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (571)
T d2ad6a1         142 EVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGT  221 (571)
T ss_dssp             ECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHH
T ss_pred             cccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccc
Confidence            43221    1111111123444333221 111356799999999998766543210                        


Q ss_pred             ----------cCCCe-EEEEEcCCCCEEEEEeC----------------CCcEEEEECCCCceEEEEecCCCC-------
Q 001352          578 ----------QHNSV-SVVHFDTAKDQILAAGD----------------DHVIKIWDMNKVQLLTTIDAGGGL-------  623 (1093)
Q Consensus       578 ----------~~~~v-~~v~~~~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~-------  623 (1093)
                                ....+ ...++.+....++.+..                ...+.-.|.++|+.+..+....+.       
T Consensus       222 ~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~  301 (571)
T d2ad6a1         222 KTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGV  301 (571)
T ss_dssp             HTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCC
T ss_pred             cccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccccc
Confidence                      00111 23466677766666543                346788899999998877643221       


Q ss_pred             CCCceEEEecCCC---EEEEEECCCeEEEEEcCCCceeee
Q 001352          624 PENPRICFNKNGT---LLAVIANENRIKILETPESNSVDA  660 (1093)
Q Consensus       624 ~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~  660 (1093)
                      ..........+++   .++..+.+|.+.++|..+++.+..
T Consensus       302 ~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         302 NQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             CCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence            1111222333454   467788899999999999987743

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.79  E-value=0.0092  Score=66.58  Aligned_cols=194  Identities=14%  Similarity=0.121  Sum_probs=119.9

Q ss_pred             CeEEEEEccCceeEEEECCCC------------------------------CC-eEEEEEcCCCCCEEEEEeC-------
Q 001352          824 GVISLYIVMTFKTILTIMPPS------------------------------PT-ATSLAFNPHDNNVIAIGMD-------  865 (1093)
Q Consensus       824 g~i~iwd~~~~~~~~~~~~~~------------------------------~~-i~~l~~s~~d~~~lasg~~-------  865 (1093)
                      |.|.-+|.++|+.+-++..-.                              .. =..+++.+ ...++..+..       
T Consensus       178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~-~~~l~y~~tgn~~~~~~  256 (560)
T d1kv9a2         178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNR  256 (560)
T ss_dssp             CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCH
T ss_pred             ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCccccccccc-ccCeeeecCCCCccccc
Confidence            679999999999988764211                              01 12355666 4555554321       


Q ss_pred             ------------CCeEEEEEcCCcceeeecccccCCe---------EEEEEeCCC---CEEEEEeCCCcEEEEeCCCCce
Q 001352          866 ------------DSTILIYNARSSEVISKLEGHSKRV---------TGLVFSDAL---NILVSSGGDAQIFVWDVDGWGI  921 (1093)
Q Consensus       866 ------------dg~i~iwd~~~~~~~~~l~~h~~~V---------~~l~~s~dg---~~l~s~s~dg~i~iwd~~~~~~  921 (1093)
                                  ...|.-.|+++|+.+..++.....+         .-+....++   +.++.++.+|.+.++|..+++.
T Consensus       257 ~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~  336 (560)
T d1kv9a2         257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (560)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             ccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence                        2357777889998876655322111         112223344   3677788999999999999885


Q ss_pred             eeeeeeec-----------------CC-----------CcccCCCCceEEEEccCCCEEEE-Ee----------------
Q 001352          922 QTCRSLQT-----------------PD-----------GVMTLAPSETHIQFHKDQTRFLL-VH----------------  956 (1093)
Q Consensus       922 ~~~~~~~~-----------------~~-----------~~~~~~~~v~~~~~s~dg~~l~~-~~----------------  956 (1093)
                      ........                 ..           ....-...-...+++|+..++.+ ..                
T Consensus       337 i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~  416 (560)
T d1kv9a2         337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (560)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             cccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccc
Confidence            43211100                 00           00000001235678888887776 21                


Q ss_pred             --------------------CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEE
Q 001352          957 --------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1016 (1093)
Q Consensus       957 --------------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~ 1016 (1093)
                                          .|.+.-||+.+|+.+-+...+  .+..+-.++-.|.++++++.||.++-+|..+|+.+.+
T Consensus       417 ~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~--~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~  494 (560)
T d1kv9a2         417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ  494 (560)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC--CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE
Confidence                                146788999999887664433  2222223455677888999999999999999999999


Q ss_pred             eccc
Q 001352         1017 ILST 1020 (1093)
Q Consensus      1017 ~~~~ 1020 (1093)
                      +...
T Consensus       495 ~~l~  498 (560)
T d1kv9a2         495 FEAQ  498 (560)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            8833

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.026  Score=55.80  Aligned_cols=239  Identities=9%  Similarity=-0.036  Sum_probs=142.6

Q ss_pred             EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc----eeEEeecCC
Q 001352          411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS----RTYSFEGHG  486 (1093)
Q Consensus       411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~----~~~~~~~h~  486 (1093)
                      +|+.+... .|+..++.+....    .+......+..++|.+..+. ++.+-...+.|.--++....    ....+....
T Consensus         3 fLl~s~~~-~I~~~~l~~~~~~----~~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~   76 (266)
T d1ijqa1           3 YLFFTNRH-EVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI   76 (266)
T ss_dssp             EEEEECBS-SEEEEETTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECCC-eEEEEECCCCcce----eeeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence            44554443 3888888765422    22234556789999988775 34454556777776664321    112222233


Q ss_pred             CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352          487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  566 (1093)
Q Consensus       487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~  566 (1093)
                      ..+..+++.+..+ .+.++-...+.|.+.+++.................+++.|...+|......  ....|...++...
T Consensus        77 ~~p~glAvD~~~~-~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~--~~~~I~r~~~dGs  153 (266)
T d1ijqa1          77 QAPDGLAVDWIHS-NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV  153 (266)
T ss_dssp             SCCCEEEEETTTT-EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred             CCcceEEEeeccc-eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC--CCcceeEeccCCC
Confidence            4566777755433 455555677889999998776666555555677899999977776655432  1345777776544


Q ss_pred             eeeeeeecccccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352          567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  645 (1093)
Q Consensus       567 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  645 (1093)
                      .........   ......+++.+.++.|+.+ ...+.|...++....................+++. ++.+..+-..++
T Consensus       154 ~~~~l~~~~---~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~  229 (266)
T d1ijqa1         154 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (266)
T ss_dssp             CEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             ceecccccc---cceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCC
Confidence            333332221   2457889999988877765 56688999998765554444433332233456665 233344434667


Q ss_pred             eEEEEEcCCCceeeecc
Q 001352          646 RIKILETPESNSVDAAG  662 (1093)
Q Consensus       646 ~i~iw~~~~~~~~~~~~  662 (1093)
                      .|...+..++.....+.
T Consensus       230 ~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         230 AIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             EEEEEETTTCCCCEEEE
T ss_pred             eEEEEECCCCcceEEEE
Confidence            88877777665444443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.74  E-value=0.013  Score=63.15  Aligned_cols=249  Identities=12%  Similarity=0.061  Sum_probs=137.6

Q ss_pred             CceeeeecCCCceEEEEEccCC----cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352          337 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  412 (1093)
Q Consensus       337 ~V~~~~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l  412 (1093)
                      .+..+++||||++++.+-+.+|    .+++.|+.+|+.+.. .+                 .  ......++|++|++.|
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~i-----------------~--~~~~~~~~W~~D~~~~  185 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VL-----------------E--RVKFSCMAWTHDGKGM  185 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EE-----------------E--EECSCCEEECTTSSEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-cc-----------------c--cccccceEEcCCCCEE
Confidence            4456788999998666655555    599999999987642 11                 0  1112468999999988


Q ss_pred             EEEEcC----------------CEEEEEEccCCCcccceEEecccc--ccEEEEEeeCCCCcEEEEEEc-CCCcEEEE--
Q 001352          413 GVAYSK----------------HIVQLYAYHGGSDARQQLEIDAHV--GNVNDLAFSAPCKQISVITCG-DDKTIKVW--  471 (1093)
Q Consensus       413 as~~~d----------------~~i~iwd~~~~~~~~~~~~~~~h~--~~v~~~~~s~d~~~l~l~s~~-~d~~i~vw--  471 (1093)
                      .....+                ..|..|.+.+...-. ...+....  ..+..+..++|++.+++.+.. .+....+|  
T Consensus       186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~  264 (430)
T d1qfma1         186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC  264 (430)
T ss_dssp             EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred             EEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence            765432                257788887754221 11333333  346677889999953332332 23344444  


Q ss_pred             ECCCCc--------eeEEeecCCCCeEEeeecccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCCCCceEEEE
Q 001352          472 DAVTGS--------RTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMA  537 (1093)
Q Consensus       472 d~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~  537 (1093)
                      |+....        ....+.........+..  . ++.+++...   .++.|...++.....   ...+..+...+..-.
T Consensus       265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~  341 (430)
T d1qfma1         265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN--E-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV  341 (430)
T ss_dssp             EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE--E-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE
T ss_pred             eCCCcccccccccceeEeecccccceEEEec--C-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE
Confidence            443221        11222222222322221  1 222333322   235666666665432   223333444454445


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe----CCCcEEEEECCCCce
Q 001352          538 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL  613 (1093)
Q Consensus       538 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~----~dg~i~iwd~~~~~~  613 (1093)
                      ++..+.+|+.... .++...|++++..++..........   +.+..+...++...+...-    .-.+++-+|+.+++.
T Consensus       342 ~~~~~~~lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~~~---~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         342 ACVRSNFLVLCYL-HDVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEETTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EEEECCEEEEEEE-cCCEeEEEEEECCCCcEEEecCCCC---ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            5555566665543 2357789999999887755543332   5566555556555544322    347788899988764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.73  E-value=0.0068  Score=64.50  Aligned_cols=125  Identities=10%  Similarity=0.163  Sum_probs=79.3

Q ss_pred             ceEEEEEccCCCEEEEEecCCC-------CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-CcE
Q 001352          532 GCTRMAYSANGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-HVI  603 (1093)
Q Consensus       532 ~v~~~~~s~d~~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-g~i  603 (1093)
                      .+...+...+|+.++.++...+       ....+.+||+.+++..........+.......++.+++..++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            3344455567888887774221       12247799999887544322222111233456788999888887654 689


Q ss_pred             EEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC------CeEEEEEcCCCce
Q 001352          604 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE------NRIKILETPESNS  657 (1093)
Q Consensus       604 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iw~~~~~~~  657 (1093)
                      .+||..+......-..... ..-..++..+||++++.++.+      ..+.+||..+...
T Consensus       101 ~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             eEecCccCccccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            9999988776543322222 223567788899999988753      4688999887643

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=0.029  Score=55.23  Aligned_cols=223  Identities=13%  Similarity=0.053  Sum_probs=138.9

Q ss_pred             CCCCeEEEEECCCCCEEEEEE-cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC
Q 001352          396 PGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  474 (1093)
Q Consensus       396 h~~~V~~v~~s~dg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  474 (1093)
                      +...+..++|.+..++|.... .++.|...++.++....   .+......+..+++..-+.. +.++-...+.|.+.++.
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~d  109 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMD  109 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEecC
Confidence            445688899998877777664 56778888887654322   23333356888999876664 44566667899999987


Q ss_pred             CCceeEEeecCCCCeEEeeecccCCccEEEEEecCC--eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352          475 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  552 (1093)
Q Consensus       475 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~  552 (1093)
                      .......+.........+++.|.. +.++.+-...+  .|..-+++...........-.....+++.+.++.|+.+..  
T Consensus       110 g~~~~~l~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~--  186 (263)
T d1npea_         110 GTQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--  186 (263)
T ss_dssp             SCSCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET--
T ss_pred             CceEEEEecccccCCcEEEEeccc-CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC--
Confidence            655433333334567888886653 33333433223  3444455544444444334456689999998888877643  


Q ss_pred             CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEecCCCCCCCceEEE
Q 001352          553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  631 (1093)
Q Consensus       553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  631 (1093)
                       +.+.|...++........+.+..    ....+++.  +.+|+.. ...+.|...|..+++.+..+..... .....++.
T Consensus       187 -~~~~I~~~~~~g~~~~~v~~~~~----~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi~v  258 (263)
T d1npea_         187 -GTHRAECLNPAQPGRRKVLEGLQ----YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITI  258 (263)
T ss_dssp             -TTTEEEEEETTEEEEEEEEECCC----SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEE
T ss_pred             -CCCEEEEEECCCCCeEEEECCCC----CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC-CCcceEEE
Confidence             25578888887665544444433    34567765  4556554 4678899999999988776643322 23445555


Q ss_pred             ec
Q 001352          632 NK  633 (1093)
Q Consensus       632 s~  633 (1093)
                      .+
T Consensus       259 ~~  260 (263)
T d1npea_         259 AL  260 (263)
T ss_dssp             EC
T ss_pred             eC
Confidence            43

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.70  E-value=0.0072  Score=62.02  Aligned_cols=198  Identities=12%  Similarity=0.135  Sum_probs=126.6

Q ss_pred             EEEeeC---CCCcEEEEEEcCCCcEEEEECCCCceeEEeec-CCCCeEEeeecccCCccEEEEEecCC------------
Q 001352          447 DLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDG------------  510 (1093)
Q Consensus       447 ~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg------------  510 (1093)
                      .++|..   ||++ +++.-..+.+|-+-|+.+.++.+.+.. ....+..++....++-.+++..+.+.            
T Consensus        89 ~~S~TdGtyDGry-lFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          89 HMSFTEGKYDGRF-LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccccCCccceeE-EEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            456654   7885 566777889999999999998765533 33455666666666667888877633            


Q ss_pred             ------eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC-----------CceeEEEEe-----------
Q 001352          511 ------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-----------GESFLVEWN-----------  562 (1093)
Q Consensus       511 ------~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~-----------~~~~i~iwd-----------  562 (1093)
                            .+.++|..+.+......... ....+.++++|+++++.+.+.+           ....+.+++           
T Consensus       168 ~~~y~~~~t~ID~~tm~V~~QV~V~g-~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             hhhcceEEEEEecCCceEEEEeeeCC-ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence                  35678888777666554333 4567899999999998764321           112233333           


Q ss_pred             ------------CCCC---eeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc------------eE
Q 001352          563 ------------ESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ------------LL  614 (1093)
Q Consensus       563 ------------~~~~---~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~------------~~  614 (1093)
                                  ....   ..++.+..    ......+.++|||+++++++ .+.++.|+|++.-.            ..
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIPV----pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~  322 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIPI----ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  322 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEEE----ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred             CcEEeCCceeecccccCCcceeEEEec----CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence                        2211   11111111    13456789999999998855 78999999986421            11


Q ss_pred             EEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352          615 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  653 (1093)
Q Consensus       615 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  653 (1093)
                      .....  + ..-...+|+..|.-..+.--|..|.-|++.
T Consensus       323 ~e~el--g-lgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         323 AEPEL--G-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             ECCBC--C-SCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             eeccc--C-cCccccccCCCceEEEEeeccceEEEEecc
Confidence            11111  1 123567888888666666679999999985

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.70  E-value=0.013  Score=65.33  Aligned_cols=81  Identities=15%  Similarity=0.176  Sum_probs=51.8

Q ss_pred             CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCC-eEEEEEeCCCC-E
Q 001352          824 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALN-I  901 (1093)
Q Consensus       824 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~-~  901 (1093)
                      |.+.-||+.+++.+.+...... ...-.++- .+.++++|+.||.++-+|..+|+.+.+++-..+. -.-+.+..||+ +
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~-~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCC-CCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            4678899999998877652221 11111222 3457888999999999999999999877632211 11145566885 5


Q ss_pred             EEEEe
Q 001352          902 LVSSG  906 (1093)
Q Consensus       902 l~s~s  906 (1093)
                      ++..+
T Consensus       516 v~v~a  520 (560)
T d1kv9a2         516 VAIMA  520 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.70  E-value=0.0037  Score=70.24  Aligned_cols=77  Identities=10%  Similarity=0.081  Sum_probs=50.7

Q ss_pred             CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeeccc----ccCCeEEEEEeCCC
Q 001352          824 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG----HSKRVTGLVFSDAL  899 (1093)
Q Consensus       824 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~----h~~~V~~l~~s~dg  899 (1093)
                      |.|.-||+.+++.+.+..... ....-.++- .+.++++|+.||.++-+|..+|+.+.++.-    +..+   +.|..||
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~-~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P---~tY~~dG  527 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP---MTYTHKG  527 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETT
T ss_pred             ceEEEEeCCCCceecccCCCC-CCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC---eEEEECC
Confidence            678888999998876653221 111112222 455788899999999999999999987753    3333   4455688


Q ss_pred             C-EEEEE
Q 001352          900 N-ILVSS  905 (1093)
Q Consensus       900 ~-~l~s~  905 (1093)
                      + +++..
T Consensus       528 kQYvav~  534 (596)
T d1w6sa_         528 TQYVAIY  534 (596)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5 45443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.65  E-value=0.032  Score=53.99  Aligned_cols=230  Identities=12%  Similarity=0.100  Sum_probs=143.7

Q ss_pred             eeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCC
Q 001352          340 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH  419 (1093)
Q Consensus       340 ~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~  419 (1093)
                      +.-.+|..+ +||.-+ ..++.|+|+++.+.+..+.                    ...+|..-.|-.+. .|+..+ +.
T Consensus        67 sAIMhP~~~-IiALra-g~~LQiFnletK~klks~~--------------------~~e~VvfWkWis~~-~L~lVT-~t  122 (327)
T d1utca2          67 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLN-TVALVT-DN  122 (327)
T ss_dssp             EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCCCEEEESSSS-EEEEEC-SS
T ss_pred             hhhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEE--------------------cCCCcEEEEecCCC-EEEEEc-CC
Confidence            455678887 566544 4689999999998887644                    23578888887554 555554 44


Q ss_pred             EEEEEEccCCCcccceEEeccccc----cEEEEEeeCCCCcEEEEEE-c-----CCCcEEEEECCCCceeEEeecCCCCe
Q 001352          420 IVQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITC-G-----DDKTIKVWDAVTGSRTYSFEGHGAPV  489 (1093)
Q Consensus       420 ~i~iwd~~~~~~~~~~~~~~~h~~----~v~~~~~s~d~~~l~l~s~-~-----~d~~i~vwd~~~~~~~~~~~~h~~~v  489 (1093)
                      .|+=|+++....  +...+..|..    .|..-..+++.+++ +++| +     -.|.+.+|..+.+ .-+.++||.+..
T Consensus       123 aVYHW~~~g~s~--P~k~fdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F  198 (327)
T d1utca2         123 AVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF  198 (327)
T ss_dssp             EEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEE
T ss_pred             ceEEEcccCCCC--chhhhhhcccccCceEEEEEECCCCCEE-EEEeEecCCCceeEEEEEEEeccC-cCccccceeeee
Confidence            599999965442  3334555543    57777788888863 3333 1     2357889986544 456778887766


Q ss_pred             EEeeecccCCcc-EEEEEe---cCCeEEEEEcCCCCc---e-----EEecC----CCCceEEEEEccCCCEEEEEecCCC
Q 001352          490 YSLCPHAKENIH-FIFSIS---VDGKIKAWLYDSLGA---R-----VDYDA----PGLGCTRMAYSANGRRLFSCGTSKE  553 (1093)
Q Consensus       490 ~~~~~~~~~~~~-~l~s~~---~dg~i~vwd~~~~~~---~-----~~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~  553 (1093)
                      ..+.+....... .++.+.   ..+.+++-++.....   .     ..+..    ...-..++.+|+.-..++..+.   
T Consensus       199 ~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK---  275 (327)
T d1utca2         199 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---  275 (327)
T ss_dssp             EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET---
T ss_pred             EEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec---
Confidence            666554332222 233222   236788888865321   1     11111    1223457778887777777765   


Q ss_pred             CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 001352          554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  604 (1093)
Q Consensus       554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~  604 (1093)
                       .|.+.+||+.++.++..-+-..   ..|...+-..+..-+++...+|.|.
T Consensus       276 -~G~i~lyDleTgt~i~~nRIs~---~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         276 -YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             -TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             -CcEEEEEEcccccEEEEeecCC---CceEEeccCCCCceEEEECCCCeEE
Confidence             7789999999999887665544   5565555555555666666666554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.61  E-value=0.035  Score=61.77  Aligned_cols=113  Identities=6%  Similarity=-0.109  Sum_probs=64.6

Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCccee
Q 001352          892 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL  971 (1093)
Q Consensus       892 ~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~  971 (1093)
                      ..+++|+..++.....+....+.......         ..+...   ........+..........|.|.-+|+.+|+.+
T Consensus       390 ~~a~dP~~~~~yv~~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~  457 (571)
T d2ad6a1         390 VDSYDPESRTLYAGLNHICMDWEPFMLPY---------RAGQFF---VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK  457 (571)
T ss_dssp             BCEEETTTTEEEEEEECEEEEEEECCCCC---------CTTSCC---CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE
T ss_pred             cceECCCCceEEEeccccccccccccccc---------cCCccc---cccceeeccccCCcccCCcccEEEeccCCCcee
Confidence            36789998888887776544333222100         000000   111122222111111112357888899999887


Q ss_pred             eeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352          972 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus       972 ~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
                      -+...+.  +..+-..+..|.++++++.||.++-+|.++|+.+.++.
T Consensus       458 W~~~~~~--~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         458 WTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eEcCCCC--CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            6644332  11111223356688889999999999999999999887

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.58  E-value=0.09  Score=58.56  Aligned_cols=60  Identities=13%  Similarity=0.115  Sum_probs=46.2

Q ss_pred             CeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001352          958 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1019 (1093)
Q Consensus       958 ~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 1019 (1093)
                      |.|.-+|+.+|+.+-+...++  ++.+-..+..|.++++++.||.++-+|..+|+.+.++..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~--p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEcCCCCcEEeecCCCC--CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            568888999998877655433  233323456788888999999999999999999999883

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.55  E-value=0.0028  Score=65.13  Aligned_cols=195  Identities=10%  Similarity=0.079  Sum_probs=125.3

Q ss_pred             EEEEc---cCCCEEEEEe--CCeEEEEEccCceeEEEECCC-CCCeEEEEEcCC-CCCEEEEEeCCC-------------
Q 001352          808 CFALS---KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAFNPH-DNNVIAIGMDDS-------------  867 (1093)
Q Consensus       808 ~l~~s---~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~-d~~~lasg~~dg-------------  867 (1093)
                      .+.+.   +||+++.+..  +++|.+.|+.+.+..+.+..+ ...+..+...++ ...|++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            44444   4899999997  588999999999887655433 345666665431 455777766532             


Q ss_pred             -----eEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCc---------------EEEEe------------
Q 001352          868 -----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ---------------IFVWD------------  915 (1093)
Q Consensus       868 -----~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~---------------i~iwd------------  915 (1093)
                           .+.++|..+.+...++.- .+....+.+++||+++++.+.+..               +.+++            
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                 367789988887766552 334667999999999998875421               22333            


Q ss_pred             -----------CCCCc-eeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCccee-------e-e
Q 001352          916 -----------VDGWG-IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCL-------K-Q  973 (1093)
Q Consensus       916 -----------~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~~-------~-~  973 (1093)
                                 ..... ......+..+       .....+.++|||++++++  -+.++.|+|++.-...       + .
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVp-------KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~  320 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA  320 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred             cEEeCCceeecccccCCcceeEEEecC-------CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence                       22100 0001112222       235578999999999995  5789999998632211       0 0


Q ss_pred             --eecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001352          974 --WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus       974 --~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
                        -.....-....-+|...|.-..|---|..|.-|++..
T Consensus       321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EEeecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence              0111244566788998886666667899999999854

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.058  Score=53.14  Aligned_cols=241  Identities=9%  Similarity=-0.041  Sum_probs=145.6

Q ss_pred             eEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE-cCCEEEEEEcc
Q 001352          349 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYH  427 (1093)
Q Consensus       349 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~-~d~~i~iwd~~  427 (1093)
                      +||++-  ...|+-.++.+.....                    +......+.+++|.+..++|.-.. ..+.|.--++.
T Consensus         3 fLl~s~--~~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~   60 (266)
T d1ijqa1           3 YLFFTN--RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD   60 (266)
T ss_dssp             EEEEEC--BSSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred             EEEEEC--CCeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEec
Confidence            345543  3458888887654332                    222445678999999888777664 45667766665


Q ss_pred             CCCcccce-EEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEE
Q 001352          428 GGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI  506 (1093)
Q Consensus       428 ~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~  506 (1093)
                      ........ ..+......+..+++.+.++. +.++-...+.|.+.++........+.........+++++. +|.+..+.
T Consensus        61 ~~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~  138 (266)
T d1ijqa1          61 RAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTD  138 (266)
T ss_dssp             -------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEE
T ss_pred             CCCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEec
Confidence            42211111 122233345678899877775 4555666788999998776655555555666788888654 33344443


Q ss_pred             -ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEE
Q 001352          507 -SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV  585 (1093)
Q Consensus       507 -~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v  585 (1093)
                       +..+.|...+++...........-.....+++.+.++.|+.+..   ..+.|...++............. .......+
T Consensus       139 ~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~~~~~~~~~~-~~~~p~~l  214 (266)
T d1ijqa1         139 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEK-RLAHPFSL  214 (266)
T ss_dssp             CSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTT-TTSSEEEE
T ss_pred             cCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC---CcCEEEEEECCCCCEEEEEeCCC-cccccEEE
Confidence             23456766777655544444444456789999999888887743   24578888886654433333322 11335566


Q ss_pred             EEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEec
Q 001352          586 HFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDA  619 (1093)
Q Consensus       586 ~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~  619 (1093)
                      ++.  +.+|+.+ ..++.|...+..+++....+..
T Consensus       215 av~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         215 AVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             EEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             EEE--CCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence            665  3455554 4678888888888776666553

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.47  E-value=0.019  Score=64.16  Aligned_cols=186  Identities=12%  Similarity=0.054  Sum_probs=103.4

Q ss_pred             eEEEEEccCceeEEEECCCCC---------CeEEEEEcCCCC---CEEEEEeCCCeEEEEEcCCcceeeeccccc-----
Q 001352          825 VISLYIVMTFKTILTIMPPSP---------TATSLAFNPHDN---NVIAIGMDDSTILIYNARSSEVISKLEGHS-----  887 (1093)
Q Consensus       825 ~i~iwd~~~~~~~~~~~~~~~---------~i~~l~~s~~d~---~~lasg~~dg~i~iwd~~~~~~~~~l~~h~-----  887 (1093)
                      .|.-.|+.+++....++....         +........ ++   ..++.++.+|.++++|..+|+.+...+...     
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~-~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~  362 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS  362 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceec-CCCceeeeeeccccceeEEecccccccccccccccccccc
Confidence            355667777776655443211         112222222 22   467778899999999999998764432110     


Q ss_pred             -----------------------------C-CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCC
Q 001352          888 -----------------------------K-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  937 (1093)
Q Consensus       888 -----------------------------~-~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  937 (1093)
                                                   + .-..++++|+...+.....+....++.....+...     ...+.....
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g  437 (573)
T d1kb0a2         363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ-----AGPGKPQSG  437 (573)
T ss_dssp             EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC-----CCTTSTTGG
T ss_pred             ccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeeccccccccc-----CCCCccccc
Confidence                                         0 01124678887777777777666666554432111     001100000


Q ss_pred             CCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001352          938 PSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1017 (1093)
Q Consensus       938 ~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~ 1017 (1093)
                      .......+ +++.-.....-|.+.-||+.+|+.+-+...+.  +...-..+-.|.++++++.||.++.+|..+|+.+.++
T Consensus       438 ~~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~--p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~  514 (573)
T d1kb0a2         438 TGWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS--PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (573)
T ss_dssp             GTCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCCC--CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEE
Confidence            00000000 00000000112568888999998876644332  2222234557889999999999999999999999998


Q ss_pred             cc
Q 001352         1018 LS 1019 (1093)
Q Consensus      1018 ~~ 1019 (1093)
                      ..
T Consensus       515 ~~  516 (573)
T d1kb0a2         515 PT  516 (573)
T ss_dssp             EC
T ss_pred             EC
Confidence            73

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.43  E-value=0.16  Score=56.54  Aligned_cols=382  Identities=11%  Similarity=0.055  Sum_probs=190.7

Q ss_pred             EEEEEcCCCcEEEEECCCCceeEEeecCC--------CCe-EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001352          458 SVITCGDDKTIKVWDAVTGSRTYSFEGHG--------APV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA  528 (1093)
Q Consensus       458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~--------~~v-~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  528 (1093)
                      .++.++.++.|.-.|.++|+.+-++....        ..+ ..+++    .+..++.++.++.+.-.|..+++.......
T Consensus        70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~----~~~~i~~~t~~~~l~alda~tG~~~W~~~~  145 (582)
T d1flga_          70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE----eCCceEEecCCCeEEEecccccceeeeecc
Confidence            46667778889999999999988764211        001 11222    124678889999999999999887764432


Q ss_pred             CCCc----e--EEEEEcc--CCCEEEEEecCC---CCceeEEEEeCCCCeeeeeeecccc--------------------
Q 001352          529 PGLG----C--TRMAYSA--NGRRLFSCGTSK---EGESFLVEWNESEGAIKRTYQGLQL--------------------  577 (1093)
Q Consensus       529 ~~~~----v--~~~~~s~--d~~~l~~~~~~~---~~~~~i~iwd~~~~~~~~~~~~~~~--------------------  577 (1093)
                      ....    .  ....+.+  .+..++..+...   ...+.|.-+|..+|+.+-.+.....                    
T Consensus       146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~  225 (582)
T d1flga_         146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS  225 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred             cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence            1110    0  0011111  133333332111   1245688899999887655432210                    


Q ss_pred             -----------------cCCC-eEEEEEcCCCCEEEEEeC------------------------CCcEEEEECCCCceEE
Q 001352          578 -----------------QHNS-VSVVHFDTAKDQILAAGD------------------------DHVIKIWDMNKVQLLT  615 (1093)
Q Consensus       578 -----------------~~~~-v~~v~~~~~~~~l~~~~~------------------------dg~i~iwd~~~~~~~~  615 (1093)
                                       .... -..+++.+....++.+..                        ...+.-.|..+|+...
T Consensus       226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W  305 (582)
T d1flga_         226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW  305 (582)
T ss_dssp             SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred             CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence                             0011 223567777777766431                        2347778899999887


Q ss_pred             EEecCCCCCCC-------ceEEEe-cCCC---EEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeec
Q 001352          616 TIDAGGGLPEN-------PRICFN-KNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI  684 (1093)
Q Consensus       616 ~~~~~~~~~~v-------~~v~~s-~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  684 (1093)
                      .+....+....       ..+.+. .++.   .++..+.++.+.++|..+++.+....................      
T Consensus       306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~------  379 (582)
T d1flga_         306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTG------  379 (582)
T ss_dssp             EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTC------
T ss_pred             cccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccCccccccccccccc------
Confidence            77643321111       111121 2332   566678899999999999987665443333322222211100      


Q ss_pred             cCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeee
Q 001352          685 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  764 (1093)
Q Consensus       685 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~  764 (1093)
                         .........+  .....+....    +          .....|.......-...+++|+...+.+...+.....|.-
T Consensus       380 ---~~~~~~~~~~--~~~~~~~~~~----~----------~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~  440 (582)
T d1flga_         380 ---RPVEREGQRP--PLPEPGQKHG----K----------AVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTE  440 (582)
T ss_dssp             ---CEEECTTCSC--CCCCTTCSSC----C----------CEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEEC
T ss_pred             ---cceecccccc--cccccccccc----c----------eEEECCCccCCcccccceecCCCCceeeeccccccccccc
Confidence               0000000000  0000000000    0          0000111001111223467777666666665543333321


Q ss_pred             cCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCC
Q 001352          765 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP  843 (1093)
Q Consensus       765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~  843 (1093)
                      ....                  ..+.            .........-+-     ... .|.|.-+|+.+|+.+.+...+
T Consensus       441 ~~~~------------------~~g~------------~~~~~~~~~~~~-----~~~~~G~l~AiD~~TG~i~W~~~~~  485 (582)
T d1flga_         441 EVSY------------------TKGS------------AYLGMGFRIKRM-----YDDHVGSLRAMDPVSGKVVWEHKEH  485 (582)
T ss_dssp             CCCC------------------CTTS------------CCCCEEEEEEES-----CSSCSEEEEEECTTTCCEEEEEEES
T ss_pred             cccc------------------cccc------------cccccCcccccc-----ccCCCCeEEEEcCCCCcEEeecCCC
Confidence            1100                  0000            000001110000     001 367888899999888776643


Q ss_pred             CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCC-eEEEEEeCCCC-EEEEE
Q 001352          844 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALN-ILVSS  905 (1093)
Q Consensus       844 ~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~-~l~s~  905 (1093)
                      ..... -.++. .+.++++|+.||.++-+|..+|+.+.+++-.... -.-+.|..||+ +++..
T Consensus       486 ~p~~~-g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~  547 (582)
T d1flga_         486 LPLWA-GVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             SCCCS-CCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCcc-ceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            32211 11223 4557888999999999999999999877632111 11156677885 45443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.17  E-value=0.12  Score=49.89  Aligned_cols=257  Identities=11%  Similarity=0.110  Sum_probs=143.6

Q ss_pred             ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC
Q 001352          555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  634 (1093)
Q Consensus       555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  634 (1093)
                      ...|.+.|+..+....+..-      ...+.-.+|..+.++.-+ ..++.|+|+++.+.++.......   |.--.|-. 
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi------~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~---VvfWkWis-  112 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWIS-  112 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC------CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEEESS-
T ss_pred             CceEEEEECCCCCcceeccc------chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCC---cEEEEecC-
Confidence            56789999987654322211      223455778877776644 56899999999999999887643   55555654 


Q ss_pred             CCEEEEEECCCeEEEEEcCCCc-eeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccccee
Q 001352          635 GTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  713 (1093)
Q Consensus       635 ~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  713 (1093)
                      .+.|+..+. ..|+-|++.... +...+..|..                                               
T Consensus       113 ~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~-----------------------------------------------  144 (327)
T d1utca2         113 LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSS-----------------------------------------------  144 (327)
T ss_dssp             SSEEEEECS-SEEEEEESSSSCCCEEEEECCGG-----------------------------------------------
T ss_pred             CCEEEEEcC-CceEEEcccCCCCchhhhhhccc-----------------------------------------------
Confidence            445666654 589999985431 1111111100                                               


Q ss_pred             cceeeccCccccccccCccccccceEEEEeecCCceEEEeec-------cceeEEeeecCcccCcCcccccccCCcccCC
Q 001352          714 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-------NGVHLMWRWPRNDLTLSTEATTKVPPRLYQP  786 (1093)
Q Consensus       714 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~  786 (1093)
                                         -....|-.-..+++.++++..+-       .|.+.+|..+.+...               +
T Consensus       145 -------------------L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ---------------~  190 (327)
T d1utca2         145 -------------------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------------P  190 (327)
T ss_dssp             -------------------GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE---------------E
T ss_pred             -------------------ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc---------------c
Confidence                               01223444445555555544331       255666665543210               0


Q ss_pred             CCCC--ceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCce---e------EEEECC---CCCCeEEEEE
Q 001352          787 RHGP--QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---T------ILTIMP---PSPTATSLAF  852 (1093)
Q Consensus       787 ~~~~--~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~---~------~~~~~~---~~~~i~~l~~  852 (1093)
                      -.|.  +.....+.+  ...+..-++|...+     ...+++.|.++.+..   .      +..+-+   ..+-..++.+
T Consensus       191 ieGhaa~F~~~~~~g--~~~~~~lf~fa~r~-----~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqv  263 (327)
T d1utca2         191 IEGHAASFAQFKMEG--NAEESTLFCFAVRG-----QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI  263 (327)
T ss_dssp             ECCSEEEEEEECCTT--CSSCEEEEEEEEEE-----TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEE
T ss_pred             ccceeeeeEEEEcCC--CCCCceEEEEEECC-----CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEe
Confidence            1111  122222222  22222222222111     013678888886421   1      111111   2345678888


Q ss_pred             cCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 001352          853 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF  912 (1093)
Q Consensus       853 s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~  912 (1093)
                      |+ .-.++..-+.-|.|++||+.++.++..-+--...|...+-..+..=++....+|.|.
T Consensus       264 s~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         264 SE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             ET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             ec-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            88 666888899999999999999999876665566666555555545555556677654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.10  E-value=0.026  Score=63.06  Aligned_cols=272  Identities=15%  Similarity=0.101  Sum_probs=155.5

Q ss_pred             EEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE------cCCEEEE
Q 001352          350 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY------SKHIVQL  423 (1093)
Q Consensus       350 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~------~d~~i~i  423 (1093)
                      ++..++.|+.+.-.|.+||+.+..+...  |......      .  ...++.      -+..++++.      ..|.|+-
T Consensus       123 ~v~~~t~dg~l~Alda~tG~~~w~~~~~--d~~~~~~------~--t~~P~v------~~~~vivg~~~~e~~~~G~v~A  186 (596)
T d1w6sa_         123 LILKTQLDGNVAALNAETGETVWKVENS--DIKVGST------L--TIAPYV------VKDKVIIGSSGAELGVRGYLTA  186 (596)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECC--CGGGTCB------C--CSCCEE------ETTEEEECCBCGGGTCCCEEEE
T ss_pred             EEEEEeCCCCeEeeccccCceecccccc--ccccccc------c--ccCCcE------ECCeEEEeeccccccccCceEE
Confidence            4777888999999999999987643211  1000000      0  001110      133444543      2488999


Q ss_pred             EEccCCCcccceEEecc-----------------------------------ccccEEEEEeeCCCCcEEEEEEcC----
Q 001352          424 YAYHGGSDARQQLEIDA-----------------------------------HVGNVNDLAFSAPCKQISVITCGD----  464 (1093)
Q Consensus       424 wd~~~~~~~~~~~~~~~-----------------------------------h~~~v~~~~~s~d~~~l~l~s~~~----  464 (1093)
                      +|..+|+.+-.......                                   -...-..+++.+....+++.++..    
T Consensus       187 ~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~  266 (596)
T d1w6sa_         187 YDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWN  266 (596)
T ss_dssp             EETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSC
T ss_pred             EECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccc
Confidence            99999986543222110                                   000112345566666333333322    


Q ss_pred             ----------CCcEEEEECCCCceeEEeecCCCCeEEee-------e-cccCCc---cEEEEEecCCeEEEEEcCCCCce
Q 001352          465 ----------DKTIKVWDAVTGSRTYSFEGHGAPVYSLC-------P-HAKENI---HFIFSISVDGKIKAWLYDSLGAR  523 (1093)
Q Consensus       465 ----------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~-------~-~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~  523 (1093)
                                ...|.-.|+.+|+.+..++.....+....       + .+..++   ..++....+|.+.++|..+++.+
T Consensus       267 ~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i  346 (596)
T d1w6sa_         267 ETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (596)
T ss_dssp             GGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCcee
Confidence                      34577889999999877754222111110       0 012222   46788899999999999888766


Q ss_pred             EEecCCC-------------C--------------------------ceEEEEEccCCCEEEEEecC-------------
Q 001352          524 VDYDAPG-------------L--------------------------GCTRMAYSANGRRLFSCGTS-------------  551 (1093)
Q Consensus       524 ~~~~~~~-------------~--------------------------~v~~~~~s~d~~~l~~~~~~-------------  551 (1093)
                      .......             .                          .-..++++|+..+++.....             
T Consensus       347 ~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~  426 (596)
T d1w6sa_         347 SANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYK  426 (596)
T ss_dssp             EEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred             eeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccc
Confidence            4322110             0                          01234667766665543210             


Q ss_pred             ----------------------CCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001352          552 ----------------------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  609 (1093)
Q Consensus       552 ----------------------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~  609 (1093)
                                            ....+.|.-||+.+|+.+-......    +...-.++..+..++.|+.||.++.+|.+
T Consensus       427 ~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~----~~~gg~lsTagglVF~G~~Dg~l~A~Da~  502 (596)
T d1w6sa_         427 AGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF----AVWGGTMATAGDLVFYGTLDGYLKARDSD  502 (596)
T ss_dssp             TTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             ccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccCCCC----CCccceeEecCCEEEEECCCCeEEEEECC
Confidence                                  0113578889999998765443222    22222233457788899999999999999


Q ss_pred             CCceEEEEecCCCCCCCceEEEecCCCE-EEEEE
Q 001352          610 KVQLLTTIDAGGGLPENPRICFNKNGTL-LAVIA  642 (1093)
Q Consensus       610 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~~~~  642 (1093)
                      +|+.+..+....... -.-+.|..+|+. +++..
T Consensus       503 TGe~LW~~~~~~~~~-a~P~tY~~dGkQYvav~~  535 (596)
T d1w6sa_         503 TGDLLWKFKIPSGAI-GYPMTYTHKGTQYVAIYY  535 (596)
T ss_dssp             TCCEEEEEECSSCCC-SCCEEEEETTEEEEEEEE
T ss_pred             CCcEeeEEECCCCcc-cCCeEEEECCEEEEEEEe
Confidence            999999998765432 344677778764 44433

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.06  E-value=0.16  Score=54.19  Aligned_cols=104  Identities=7%  Similarity=-0.086  Sum_probs=67.0

Q ss_pred             EEEEccCCCEEEEEe-cCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-------------
Q 001352          535 RMAYSANGRRLFSCG-TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-------------  600 (1093)
Q Consensus       535 ~~~~s~d~~~l~~~~-~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-------------  600 (1093)
                      .+++|||+++++.+- .+|+....|+++|+.+|+.+...-..    .....++|.++++.|+....+             
T Consensus       129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~----~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             ceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc----ccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            457899999988553 45555788999999999876432211    123567899999988765432             


Q ss_pred             ---CcEEEEECCCCceE--EEEecCCCCCCCceEEEecCCCEEEEEE
Q 001352          601 ---HVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKNGTLLAVIA  642 (1093)
Q Consensus       601 ---g~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~  642 (1093)
                         ..|..+.+.+....  ..+........+..+..++++++++...
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence               25777887775433  3333222222344567788999877543

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.06  E-value=0.0022  Score=47.24  Aligned_cols=54  Identities=19%  Similarity=0.382  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhc
Q 001352            5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLS   58 (1093)
Q Consensus         5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~G~w~~~~~~l~   58 (1093)
                      ++|+-+-|++||..+||.+++.+|.+|..++++  ...-...+|.-+|.-++.+-+
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQk   62 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK   62 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHH
Confidence            678999999999999999999999999988764  555566778888877766643

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.18  E-value=1.5  Score=44.03  Aligned_cols=150  Identities=15%  Similarity=0.242  Sum_probs=87.1

Q ss_pred             CEEEEEeC-----CeEEEEEccC-ceeEEEECCC-------CCCeEEEEE--cCCCCC-EEEEEeCCCeEEEEEcCC---
Q 001352          816 AYLFSASG-----GVISLYIVMT-FKTILTIMPP-------SPTATSLAF--NPHDNN-VIAIGMDDSTILIYNARS---  876 (1093)
Q Consensus       816 ~~la~~~d-----g~i~iwd~~~-~~~~~~~~~~-------~~~i~~l~~--s~~d~~-~lasg~~dg~i~iwd~~~---  876 (1093)
                      .-++++++     .+|.+|.+.. ...+..+...       ...+..+|+  ++.++. ++++...+|.+..|.+..   
T Consensus        86 ~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~  165 (353)
T d1h6la_          86 VDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKN  165 (353)
T ss_dssp             EEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTT
T ss_pred             eEEEEEeCCcCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCC
Confidence            34556652     2588888752 2333333322       123556665  664555 566677789998887732   


Q ss_pred             c----ceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCC-cccCCCCceEEEEcc--CC
Q 001352          877 S----EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSETHIQFHK--DQ  949 (1093)
Q Consensus       877 ~----~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~--dg  949 (1093)
                      +    +.++.+. -...+..|++.+..+.|..+-++.-|..++.+.........+....+ +.  ...+..++.-.  ++
T Consensus       166 g~v~~~lvr~f~-~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l--~~D~EGlaiy~~~~~  242 (353)
T d1h6la_         166 GYISGKKVRAFK-MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHL--TPDIEGLTIYYAADG  242 (353)
T ss_dssp             SSEEEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSC--CSCEEEEEEEECGGG
T ss_pred             CceeeEeeeccC-CCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccc--cCCccccEEEEcCCC
Confidence            2    3344554 34578899999998999988887655555554322222222222222 21  23566776543  33


Q ss_pred             C-EEEEE--eCCeEEEEEcCCc
Q 001352          950 T-RFLLV--HETHLAIYEAEEL  968 (1093)
Q Consensus       950 ~-~l~~~--~d~~i~vwd~~~~  968 (1093)
                      . +|+++  .++++.|||..+.
T Consensus       243 ~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         243 KGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             CEEEEEEEGGGTEEEEEESSTT
T ss_pred             CeEEEEEcCCCCeEEEEecCCC
Confidence            3 66664  5678999998753

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.21  E-value=2.1  Score=43.00  Aligned_cols=158  Identities=9%  Similarity=0.101  Sum_probs=89.8

Q ss_pred             EEEeeCCCCcEEEEEEc------------CCCcEEEEECCCCcee-EEeecCC-------CCeEEeeecccCCcc-EEEE
Q 001352          447 DLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRT-YSFEGHG-------APVYSLCPHAKENIH-FIFS  505 (1093)
Q Consensus       447 ~~~~s~d~~~l~l~s~~------------~d~~i~vwd~~~~~~~-~~~~~h~-------~~v~~~~~~~~~~~~-~l~s  505 (1093)
                      +++..|||.  .+++++            ..|.|.++|+.+.+.. ..+....       -....+.+....++. +|++
T Consensus        39 Di~~~~dg~--~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          39 DLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             EEEECTTSE--EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             eEEECCCCc--EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            566677765  444432            1488999998765432 2222111       122344443344554 3444


Q ss_pred             Ee---cCCeEEEEEcCCCCceEE----ecC-CCCceEEEEEccCCCEEEEEecC-------------CCCceeEEEEeCC
Q 001352          506 IS---VDGKIKAWLYDSLGARVD----YDA-PGLGCTRMAYSANGRRLFSCGTS-------------KEGESFLVEWNES  564 (1093)
Q Consensus       506 ~~---~dg~i~vwd~~~~~~~~~----~~~-~~~~v~~~~~s~d~~~l~~~~~~-------------~~~~~~i~iwd~~  564 (1093)
                      ..   ...+|.+|++........    +.. .....+.+++..+|..+++-...             +...+.+.-||..
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            42   456788888865543332    222 22357889999999888873210             0123445556543


Q ss_pred             CCeeeeeeecccccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCc
Q 001352          565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQ  612 (1093)
Q Consensus       565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~  612 (1093)
                        +......+.    ...+.++++|++++++++ +..+.|++|++....
T Consensus       197 --~~~~~~~~l----~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         197 --DVRVVAEGF----DFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             --CEEEEEEEE----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             --ceEEEcCCC----CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence              332223322    467899999999888765 567889999887543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.01  E-value=3.4  Score=41.19  Aligned_cols=188  Identities=15%  Similarity=0.160  Sum_probs=106.7

Q ss_pred             EEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecc----cCCccEEEEEec--C--CeEEEEEcCCCCce-EEecC
Q 001352          458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA----KENIHFIFSISV--D--GKIKAWLYDSLGAR-VDYDA  528 (1093)
Q Consensus       458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~~~--d--g~i~vwd~~~~~~~-~~~~~  528 (1093)
                      ++++...++-|.+||+ .|+.++.+.  .+.++.+....    ..+...++.++.  +  .+|.+|.+...... ..+..
T Consensus        42 lI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~  118 (353)
T d1h6la_          42 KLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD  118 (353)
T ss_dssp             EEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred             EEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence            5666666667999997 588887764  35666665431    122223455553  2  36888887643332 22222


Q ss_pred             C-------CCceEEEEE--ccC-CCEEEEEecCCCCceeEEEEeC---CCC----eeeeeeecccccCCCeEEEEEcCCC
Q 001352          529 P-------GLGCTRMAY--SAN-GRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK  591 (1093)
Q Consensus       529 ~-------~~~v~~~~~--s~d-~~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~v~~~~~~  591 (1093)
                      .       ...+..+|+  ++. |...+.... .  .+.+..|.+   ..+    +.++.+..    ...+..|.+....
T Consensus       119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~-k--~G~v~q~~l~~~~~g~v~~~lvr~f~~----~~q~EGCVvDde~  191 (353)
T d1h6la_         119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG-K--EGEFEQYELNADKNGYISGKKVRAFKM----NSQTEGMAADDEY  191 (353)
T ss_dssp             SSSCEECSSSSCCCEEEEECTTTCCEEEEEEC-S--SSEEEEEEEEECTTSSEEEEEEEEEEC----SSCEEEEEEETTT
T ss_pred             cccccccccCcceEEEEEecCCCCeEEEEEEc-C--CceEEEEEEEcCCCCceeeEeeeccCC----CCccceEEEeCCC
Confidence            1       123566666  664 554444432 2  445666654   333    33444443    2478899999999


Q ss_pred             CEEEEEeCCCcEEEEECCC-----CceEEEEecCCCCCCCceEEEe--cC--CCEEEEEECCCeEEEEEcCCC
Q 001352          592 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFN--KN--GTLLAVIANENRIKILETPES  655 (1093)
Q Consensus       592 ~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s--~~--~~~l~~~~~dg~i~iw~~~~~  655 (1093)
                      +.|+.+-++..+..++...     +..+.......-...+-.++.-  ++  |-++++.-.++++.+|+....
T Consensus       192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            9999999988777776542     1222222221223345566643  23  334444445789999998764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.49  E-value=2.4  Score=37.78  Aligned_cols=223  Identities=11%  Similarity=0.116  Sum_probs=115.8

Q ss_pred             CceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-CCCEEEEE------EcCC
Q 001352          347 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVA------YSKH  419 (1093)
Q Consensus       347 g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-dg~~las~------~~d~  419 (1093)
                      +..++.++...|.|.++-+..++.+.-                      ...+|....--. .=.++..+      -..+
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkL----------------------tkePI~~~~~Pk~~ldfi~f~RDV~kGkE~H   82 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKL----------------------NREPINSVLDPHYGVGRVILVRDVSKGAEQH   82 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEEC----------------------CSSCCSEECEECTTBSEEEEEEECSTTSCCE
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEE----------------------ecccccCcCCCccCcceEEEEeehhcCccee
Confidence            334788888899999999999887652                      122332211110 11122211      0111


Q ss_pred             EEEEEEccC-CCcccceEEecccc-ccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE--EeecCCCCeEEe---
Q 001352          420 IVQLYAYHG-GSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--SFEGHGAPVYSL---  492 (1093)
Q Consensus       420 ~i~iwd~~~-~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~--~~~~h~~~v~~~---  492 (1093)
                      .|.+-++.. |+..    .+.... -+|.++++  |++. .+++|+......+|-++.|+...  .+.+ -+.|+.+   
T Consensus        83 ai~~~Nlk~~GEE~----~i~spk~vRI~S~~y--ddk~-vvF~Gased~~~LYviegGklrkL~~vPp-FsFVtDI~~d  154 (313)
T d2hu7a1          83 ALFKVNTSRPGEEQ----RLEAVKPMRILSGVD--TGEA-VVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGD  154 (313)
T ss_dssp             EEEEEETTSTTCEE----ECTTSCSBEEEEEEE--CSSC-EEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETT
T ss_pred             eEEEEccCCCCeee----EecCCceEEEEEeee--cCce-EEEecccCCceEEEEEeCCceeeeccCCC-cceEEeccCC
Confidence            233333331 1111    222222 34555554  5555 67777777778888888876533  3322 1223333   


Q ss_pred             -----eecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352          493 -----CPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  566 (1093)
Q Consensus       493 -----~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~  566 (1093)
                           .+. .++..-++++.- .|.++++           ....+.++...+.+..+. ++.... -++....-+|++++
T Consensus       155 ~I~G~g~~-~g~~~sfF~adl~SG~lri~-----------tpkeGS~~~ay~~~gnKV-~sdyEt-~gEsywit~D~~s~  220 (313)
T d2hu7a1         155 LIAGLGFF-GGGRVSLFTSNLSSGGLRVF-----------DSGEGSFSSASISPGMKV-TAGLET-AREARLVTVDPRDG  220 (313)
T ss_dssp             EEEEEEEE-ETTEEEEEEEETTTEEEEEE-----------CCSSEEEEEEEECTTSCE-EEEEEE-SSCEEEEEECTTTC
T ss_pred             eEEEEeee-cCCcceEEEEecccCCEEEe-----------cCCCCcccceeEccCcee-eeccCC-CCceEEEEEecccC
Confidence                 221 112122333333 4455554           334556666667776665 444332 23444556798877


Q ss_pred             eeeee-eecccc---cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 001352          567 AIKRT-YQGLQL---QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT  615 (1093)
Q Consensus       567 ~~~~~-~~~~~~---~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  615 (1093)
                      +.-+. +.....   ..-.|.-+-+.|+++.++.+-.||.-.+|.  +|+.+.
T Consensus       221 ~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in  271 (313)
T d2hu7a1         221 SVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVE  271 (313)
T ss_dssp             CEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEEC
T ss_pred             ceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEec
Confidence            64332 111110   013455566899999989999999999986  455543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.34  E-value=1.5  Score=44.47  Aligned_cols=183  Identities=10%  Similarity=0.080  Sum_probs=108.3

Q ss_pred             CCeeEEEEccCCCEEEEEeCCeEEEEEccCc-----------eeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001352          804 EAVPCFALSKNDAYLFSASGGVISLYIVMTF-----------KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY  872 (1093)
Q Consensus       804 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~-----------~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iw  872 (1093)
                      ....-+++++...+++.|+...+.|..+..-           ......  .-..|..++|+. +  .|++. .++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~-d--~l~v~-~~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHG-D--QVLVS-TRNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEET-T--EEEEE-ESSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeC-C--EEEEE-eCCCEEEE
Confidence            4466789999888888888777888875321           111111  123689999985 3  45544 45668888


Q ss_pred             EcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEE
Q 001352          873 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF  952 (1093)
Q Consensus       873 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l  952 (1093)
                      +..+-........-..++..+.++|.  .++....++.+.++++..+....  ...... .......+.+++|++.|+.+
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~--~~~~v~-~~~~~~~~~~v~ws~kgkq~  185 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ--LAQNVT-SFDVTNSQLAVLLKDRSFQS  185 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE--EEESEE-EEEECSSEEEEEETTSCEEE
T ss_pred             EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcccc--ccCCcc-eEEecCCceEEEEeCCcEEE
Confidence            77664333333333456788888775  56667788999999998865322  111000 00111357788899888888


Q ss_pred             EEEeCCeEEEE-EcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEe
Q 001352          953 LLVHETHLAIY-EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF  998 (1093)
Q Consensus       953 ~~~~d~~i~vw-d~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~  998 (1093)
                      +++..+...+- ++.....+.. .......|.++.|..+..++++-+
T Consensus       186 v~~~g~~~q~k~~i~~~~~~~~-p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         186 FAWRNGEMEKQFEFSLPSELEE-LPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             EEEETTEEEEEEEECCCHHHHT-SCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEeCCCceeeccCCCCccccCC-CcCCCcceeEEEEecCceEEEEEC
Confidence            88654433332 1111111110 011245788999988877777654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.32  E-value=1.5  Score=44.57  Aligned_cols=136  Identities=7%  Similarity=-0.032  Sum_probs=84.0

Q ss_pred             CeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecc
Q 001352          805 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE  884 (1093)
Q Consensus       805 ~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~  884 (1093)
                      .|..++|+.|  .|+...++.+..++..+............++..+.++| .  .++....+|.+.++++..++......
T Consensus        88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p-~--~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCC--EEEEEeCCCEEEEEeeccccccccccccccccceecCC-c--eeEEEecCCCEEEEEeccCccccccC
Confidence            5788999755  57777778888888876555444444456788888887 3  56667778999999998875432211


Q ss_pred             c-----ccCCeEEEEEeCCCCEEEEEeCCCcEEEE-eCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE
Q 001352          885 G-----HSKRVTGLVFSDALNILVSSGGDAQIFVW-DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  954 (1093)
Q Consensus       885 ~-----h~~~V~~l~~s~dg~~l~s~s~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~  954 (1093)
                      +     -.+.+.+++|++.|+.++++..++ ..+- ++..     ...+..+....   ..+.++.|-.+..++++
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~-----~~~~~~p~~~~---~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSL-----PSELEELPVEE---YSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECC-----CHHHHTSCTTT---SEEEEEEESSSSEEEEE
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCC-----ccccCCCcCCC---cceeEEEEecCceEEEE
Confidence            1     235677888888887777764332 1111 1111     11111111111   24778888877777776

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.75  E-value=4.4  Score=39.15  Aligned_cols=73  Identities=5%  Similarity=0.024  Sum_probs=37.3

Q ss_pred             CCCEEEEEecCCC-CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceE
Q 001352          541 NGRRLFSCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLL  614 (1093)
Q Consensus       541 d~~~l~~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~  614 (1093)
                      ++..++.++.+.. .......+|..+.+....-.... ...... ++. .+++.++.|+.++     .+.+||+.+.+..
T Consensus       195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~r~~~~-~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~  271 (288)
T d1zgka1         195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH-RRSALG-ITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS  271 (288)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS-CCBSCE-EEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             eeeEEEecCccccccccceeeeeecceeeecccCccC-cccceE-EEE-ECCEEEEEecCCCCeecceEEEEECCCCEEE
Confidence            4555555543322 12356778877765543322211 011122 222 2566777776543     3788999887654


Q ss_pred             EE
Q 001352          615 TT  616 (1093)
Q Consensus       615 ~~  616 (1093)
                      ..
T Consensus       272 ~~  273 (288)
T d1zgka1         272 EV  273 (288)
T ss_dssp             EE
T ss_pred             EC
Confidence            33

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.65  E-value=7.2  Score=38.76  Aligned_cols=191  Identities=12%  Similarity=0.052  Sum_probs=101.5

Q ss_pred             eEEEEECCCCCEEEEEEc------------CCEEEEEEccCCCcccceEEecccc-----ccEEEEEe--eCCCCcEEEE
Q 001352          400 VNRVVWSPDGSLLGVAYS------------KHIVQLYAYHGGSDARQQLEIDAHV-----GNVNDLAF--SAPCKQISVI  460 (1093)
Q Consensus       400 V~~v~~s~dg~~las~~~------------d~~i~iwd~~~~~~~~~~~~~~~h~-----~~v~~~~~--s~d~~~l~l~  460 (1093)
                      .-.++..|||..+++++.            .|.|.++|+.+.+.......+.+..     -.-..+..  .+||.. +|+
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~-~L~  115 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV-YLL  115 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE-EEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE-EEE
Confidence            445788899988877642            4889999998765433222222211     11223332  456664 344


Q ss_pred             EE---cCCCcEEEEECCCCce-e---EEeec-CCCCeEEeeecccCCccEEEEEec---------------CCeEEEEEc
Q 001352          461 TC---GDDKTIKVWDAVTGSR-T---YSFEG-HGAPVYSLCPHAKENIHFIFSISV---------------DGKIKAWLY  517 (1093)
Q Consensus       461 s~---~~d~~i~vwd~~~~~~-~---~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~---------------dg~i~vwd~  517 (1093)
                      ..   ....+|.+|++..+.. +   .++.. .....+.+++.  +++.+++|-..               -+...+|..
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~--~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~  193 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  193 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEe--cCCCEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence            33   3456788888754432 1   22221 12345666664  35556666311               123344444


Q ss_pred             CCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEE
Q 001352          518 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA  597 (1093)
Q Consensus       518 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~  597 (1093)
                      +........ ..-...+.++++||+++|+++...   ...|+.|++............. -....-.+.+.+.+..+.++
T Consensus       194 ~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t~---~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         194 SPNDVRVVA-EGFDFANGINISPDGKYVYIAELL---AHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             CSSCEEEEE-EEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEE
T ss_pred             cCCceEEEc-CCCCccceeEECCCCCEEEEEeCC---CCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEE
Confidence            444433322 223456889999999999888653   4568888876443222211111 12446677777644444444


Q ss_pred             e
Q 001352          598 G  598 (1093)
Q Consensus       598 ~  598 (1093)
                      +
T Consensus       269 ~  269 (340)
T d1v04a_         269 C  269 (340)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.42  E-value=3.2  Score=43.48  Aligned_cols=112  Identities=11%  Similarity=0.086  Sum_probs=63.8

Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccC---CCEEEEEe--------
Q 001352          888 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD---QTRFLLVH--------  956 (1093)
Q Consensus       888 ~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---g~~l~~~~--------  956 (1093)
                      ...++|+|.|||++|++--..|.|++++..+++.....-+...............++|+|+   ..++..+.        
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            4578999999999998765579999999887664432222111111111235788999986   34444321        


Q ss_pred             C----Ce--EEEEEcCCcc-------ee-eeeecCCCCCEEEEEEccCCCEEEEEeC
Q 001352          957 E----TH--LAIYEAEELT-------CL-KQWFPISSVPISQATFSCDCRMVFTSFV  999 (1093)
Q Consensus       957 d----~~--i~vwd~~~~~-------~~-~~~~~~h~~~v~~~~fs~dg~~l~t~~~  999 (1093)
                      +    +.  +..+......       .+ .............+.|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            0    11  2223322211       11 1111122335678999999998887764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.38  E-value=4.6  Score=35.97  Aligned_cols=141  Identities=15%  Similarity=0.154  Sum_probs=88.4

Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCccee--eeccccc-------CCeEEEEE-eCCCCEEEEEeC-CCcEEE
Q 001352          845 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGHS-------KRVTGLVF-SDALNILVSSGG-DAQIFV  913 (1093)
Q Consensus       845 ~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~--~~l~~h~-------~~V~~l~~-s~dg~~l~s~s~-dg~i~i  913 (1093)
                      -.|.++++.  |.+.+.+|+......+|-++.|+..  ..+.+.+       +-|..+.| .+..+-+.++.- .|.++|
T Consensus       104 vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri  181 (313)
T d2hu7a1         104 MRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV  181 (313)
T ss_dssp             BEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEE
T ss_pred             EEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEE
Confidence            456777775  6788899999889999999987643  3343321       22333322 222223333333 445555


Q ss_pred             EeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE----eCCeEEEEEcCCcceeeeeecCC------CCCEE
Q 001352          914 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPIS------SVPIS  983 (1093)
Q Consensus       914 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~----~d~~i~vwd~~~~~~~~~~~~~h------~~~v~  983 (1093)
                      ++-..|                   .++....+++.+. ++.    .+....-+|.++++.-+.-+++.      ...|+
T Consensus       182 ~tpkeG-------------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~  241 (313)
T d2hu7a1         182 FDSGEG-------------------SFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAIT  241 (313)
T ss_dssp             ECCSSE-------------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEE
T ss_pred             ecCCCC-------------------cccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEE
Confidence            544432                   4667778888877 443    22233356888777655544432      45677


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEE
Q 001352          984 QATFSCDCRMVFTSFVDGTLSIHE 1007 (1093)
Q Consensus       984 ~~~fs~dg~~l~t~~~dg~v~vwd 1007 (1093)
                      -+-+.||+++++.+-.||.-++|.
T Consensus       242 ~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         242 WLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             EEEECTTSCEEEEEEETTEEEEEE
T ss_pred             eeeeCCCCcEEEEEecCCchheee
Confidence            777999999989899999999985

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.10  E-value=4.1  Score=42.65  Aligned_cols=54  Identities=20%  Similarity=0.284  Sum_probs=38.2

Q ss_pred             CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCccee--eecc------cccCCeEEEEEeCC
Q 001352          844 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLE------GHSKRVTGLVFSDA  898 (1093)
Q Consensus       844 ~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~--~~l~------~h~~~V~~l~~s~d  898 (1093)
                      -...++|+|.| |++++++--..|.|++++..+++..  ..+.      .-.+....|+|+|+
T Consensus        26 L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34678999999 8988886655799999998776532  2221      11245778999985

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.73  E-value=2.6  Score=40.99  Aligned_cols=225  Identities=10%  Similarity=0.032  Sum_probs=105.5

Q ss_pred             CeEEEEEccCce--eEEEECCCCCCeEEEEEcCCCCCEEEEEeC---------CCeEEEEEcCCccee--eecccccCCe
Q 001352          824 GVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGMD---------DSTILIYNARSSEVI--SKLEGHSKRV  890 (1093)
Q Consensus       824 g~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~~---------dg~i~iwd~~~~~~~--~~l~~h~~~V  890 (1093)
                      ..+.+||+++++  .+..+......- +++..  ++++++.|+.         -..+.+||..+.+..  ..+......-
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~   95 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI   95 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred             ceEEEEECCCCeEEECCCCCCcccee-EEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence            357889988764  322232222222 22222  4566666653         136778888765432  2222111111


Q ss_pred             EEEEEeCCCCEEEEEeCCCc-----EEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-e-----CCe
Q 001352          891 TGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-----ETH  959 (1093)
Q Consensus       891 ~~l~~s~dg~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~-----d~~  959 (1093)
                      .++.  -+++.++.++.++.     ...++..+..........  ..      .....+...++.+++.+ .     ...
T Consensus        96 ~~~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------r~~~~~~~~~~~~~~~GG~~~~~~~~~  165 (288)
T d1zgka1          96 GVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML--TR------RIGVGVAVLNRLLYAVGGFDGTNRLNS  165 (288)
T ss_dssp             EEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS--SC------CBSCEEEEETTEEEEECCBCSSCBCCC
T ss_pred             eccc--cceeeEEecceecccccceeeeeccccCccccccccc--cc------cccceeeeeeecceEecCcccccccce
Confidence            2222  25666666654443     445666664322211111  11      11112222344455443 2     245


Q ss_pred             EEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceEEEeccccccCCCCCCCccce
Q 001352          960 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1034 (1093)
Q Consensus       960 i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1034 (1093)
                      +..||..+.+....-.......-.+ ....++..++.++.+     .....+|..+...... .   ..+..    .. .
T Consensus       166 ~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~-~---~~p~~----r~-~  235 (288)
T d1zgka1         166 AECYYPERNEWRMITAMNTIRSGAG-VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFV-A---PMKHR----RS-A  235 (288)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-C---CCSSC----CB-S
T ss_pred             EEEeecccccccccccccccccccc-ccceeeeEEEecCccccccccceeeeeecceeeecc-c---CccCc----cc-c
Confidence            8889987765443211111111112 223356666666554     3466777777654321 1   11111    11 1


Q ss_pred             eEEEeCCCCCCEEEEEeCCCc-----EEEEecCCCCCCcccCCCcc
Q 001352         1035 HAIAAHPLKPTQFAVGLTNGE-----VYVIEPNEPGDTWAVLPPDE 1075 (1093)
Q Consensus      1035 ~~~~~~p~d~~~l~~~~~dg~-----v~~w~~~~~~~~~~~~~~~~ 1075 (1093)
                      .+++..  ++++++.|+.++.     |.+||+..  .+|...++.+
T Consensus       236 ~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p  277 (288)
T d1zgka1         236 LGITVH--QGRIYVLGGYDGHTFLDSVECYDPDT--DTWSEVTRMT  277 (288)
T ss_dssp             CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT--TEEEEEEECS
T ss_pred             eEEEEE--CCEEEEEecCCCCeecceEEEEECCC--CEEEECCCCC
Confidence            223333  3688888876653     67787754  4688775543

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.11  E-value=0.41  Score=41.22  Aligned_cols=61  Identities=11%  Similarity=0.199  Sum_probs=48.9

Q ss_pred             hhhhHHHhhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccc
Q 001352           71 KIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLS  131 (1093)
Q Consensus        71 ~~~~~i~~~~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  131 (1093)
                      .++|.++-+.||||+..|...+|..++++.-..+.....+..++|..+....+..+++...
T Consensus        44 ~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~  104 (149)
T d2nxpa1          44 QLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETML  104 (149)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGG
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHH
Confidence            4899999999999999999999999999865555555667788888887776665555433

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.94  E-value=23  Score=34.54  Aligned_cols=199  Identities=9%  Similarity=0.122  Sum_probs=105.9

Q ss_pred             CCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEE---eeecCcccCcCc
Q 001352          697 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM---WRWPRNDLTLST  773 (1093)
Q Consensus       697 ~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~v---w~~~~~~~~~~~  773 (1093)
                      |+...+++-+.+|.|+--..............+   ...+.+..+........++..++.|.++.   |+++..+...  
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~---k~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s--   77 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAM---KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKD--   77 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCC---CTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTS--
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCcc---cCCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccc--
Confidence            456667777888888754332211111111111   13445666666666666777777776654   3333221111  


Q ss_pred             ccccccCCcccCCCCCCceeeccCCCCCCCCCeeEE-EEcc--CCCEEEEEe-CCeEEEEEccCcee------EEEEC-C
Q 001352          774 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF-ALSK--NDAYLFSAS-GGVISLYIVMTFKT------ILTIM-P  842 (1093)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l-~~s~--dg~~la~~~-dg~i~iwd~~~~~~------~~~~~-~  842 (1093)
                                    .|..+. .-++. .....+..+ ...+  ...+|+..+ .|.++...+.....      ...+. .
T Consensus        78 --------------~G~pi~-~ll~l-~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~  141 (323)
T d1wp5a_          78 --------------LGQHIA-NIIPI-DRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK  141 (323)
T ss_dssp             --------------CCEEGG-GTSCC-CTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC
T ss_pred             --------------ccccce-eeecc-cCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhcccc
Confidence                          111111 11111 123334333 3322  244555555 69999888754321      11111 2


Q ss_pred             CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce-------e--eecccccCCeEEE-EEeCCCCEEEEEeCCCcEE
Q 001352          843 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-------I--SKLEGHSKRVTGL-VFSDALNILVSSGGDAQIF  912 (1093)
Q Consensus       843 ~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~-------~--~~l~~h~~~V~~l-~~s~dg~~l~s~s~dg~i~  912 (1093)
                      ....+..+.+.. +...++.++..|.+..++...-..       +  -.+. ..+.|.+. ...+++..|++.+..|..+
T Consensus       142 ~~D~l~~v~~~~-~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~-~~D~vv~~~~~~~~~~~ll~~T~~G~gK  219 (323)
T d1wp5a_         142 NDDQVVDVHLTD-GMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVK  219 (323)
T ss_dssp             TTCCEEEEEEEC-SCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEE
T ss_pred             ccccccceeccC-CCeEEEEEEecceeeEeecccccccCcccccccccccc-cccccchhhhccccccceeeeeeeheee
Confidence            445677777776 667888899999999998764222       1  1222 23445544 4456678888889999888


Q ss_pred             EEeCCC
Q 001352          913 VWDVDG  918 (1093)
Q Consensus       913 iwd~~~  918 (1093)
                      .-.+..
T Consensus       220 r~~~~e  225 (323)
T d1wp5a_         220 KMKLTE  225 (323)
T ss_dssp             EEEGGG
T ss_pred             cccchh
Confidence            766543