Citrus Sinensis ID: 001359

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090--

MAILALPLAISILKPRASHLSFFCAGNPSPSWFCLSPLCRRQFHRTSVCAITTSAIQEPPSTEPNNERQKASVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSEPVDLPCPKELLEAAVKKLPDDPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQQGNPTKAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQVMFSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKDKNLDLELALRLAADVQPITVDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELVQPLEDFFNHVFVMVKKESERTGLRCSRKLQTFQKALWICRFCLDFNSIQQFIKLSFFLKKKAVNNVQE

ccccHHHHHHHHccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEccccccccccccHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHccccccccEEEccccccccccccccccHHHcccccEEEEEHHHHHcccccccccEEEEEHHHHHHHHHHHccccccEEEEccccccHHHcccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccccEEEEcccccccccHHHHHccccccccccccccccHHHHHHHHHcccccccEEEEEcccEEEEEEEEEEccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHccccEEEEEEcccccccccccccccccccEEcccHHHHHHHHHHccEEccHHHHHHHHHHHHHHHHHHcccEEcccccHHHHHHccccccccEEccccHHcccccHHHHHHHHHHcccEEEEEcccccccccEEEEEccccccHHHHccccHHHcccccccHHHHHHcccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHcccccccccHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccc

ccEEHcHHHHHEccccccccEEEcccccccccEEEccccccccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEccccEcccccccHHHHHHHccccccEEEEEccccccccccccccccHHccccEEEEEEccccccHHHHHHHHHHHHccccccccEEEEEccccccHHccccccEEEEEcccEEHHHHHHHHcccccccccEEEEEHHHHHHHHHHHcccccEEEEEcccccHHHHHcccHHHHHHHcHcHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccHHEEEEEHHHHHHccccEEEccccHHHHHHccccccHHHHHHHHHcccccHHHHEEEEccccEEEEEEEEcccccHHHHHHHHHHHHHHccccccccccccccEEEccEEEEEEEccccEEEEEEEEEcccccEccccccccccEEEccHHHHHHHHHHccEEEcHHHHHHHHHHHHHHHHHHcccEEEccHHHHHHHHHHHccccEEEEcccHHHccccHHEEEEEccccccEEEEEcccccccccEEEEEcccccHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccc

MAILALPLAISIlkprashlsffcagnpspswfclsplcrrqfhrtsvcaittsaiqeppstepnnerqkasvPTFQQAIQRLQEYWASVGcsvmqcsntevgagtmnpltflrvlgpepwnvayvepsirpddsrygenpnrlqrhtqfqvilkpdpgnsqdLFIRSLSalgidvtehdirfvednwespvlgawGLGWEIWMDGMEITQFTYFqqagslqlspvsVEITYGLERILMLLQGVdhfkkiqyadgitygeLFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASglaipaydQLLKTSHAfnildsrgfvgvTERARYFGRMRSLARQCAQLWLKTRkslghplgivsepvdlpcpKELLEAAVkklpddprlfvleigteemppqdvvNASQQLKDLMLQLLNKQklshgevqafgtpRRLVVFVESLCQkqsenefeargppvskafdqqgnptkAVEGFCqryavpidslvtkaagkTEYVYARVKETARLALEVLSedvpsiisklsfpksmrwnsqvmfsrPIRWIMALHGDVVVPFMFAGVLSgnlsyglrntplatvkvqnaESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNlveapvpvlgefedsfleLPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEInlprfsgdvlpktdvgtVLAVADRLDTLVGLFaagcqpsstndpfglrrISYGLVQILIEKDKNLDLELALRLAAdvqpitvdastinDVHQFVTRRLEQFLvdkgispeIVRSVLSeranlpclatKTAYKMEAlskgqlfpkvveaysrptrivrgkdvdtalEVDETAFETIEEKALWTVYLSAknkihpginvddFIEISSELVQPLEDFFNHVFVMVKKesertglrcsRKLQTFQKALWICRFCLDFNSIQQFIKLSFFLKKKAVNNVQE

MAILALPLAISILKPRASHLSFFCAGNPSPSWFCLSPLCRRQFHRTSVCAITtsaiqeppstepnnerqkaSVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIrfvednwespVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHafnildsrgfvGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSEPVDLPCPKELLEAAVKKLPDDPRLFVLEigteemppqDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSenefeargppvsKAFDQQGNPTKAVEGFCQRYAVpidslvtkaagkteYVYARVKETARLALevlsedvpsiisklsfpksmrwNSQVMFSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVqnaesyagvmrnagvkikiedrrktifdrsnalaksvngrIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFaltddkgrLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAagcqpsstndpfglRRISYGLVQILIEKDKNLDLELALRLAADVQPITVDASTINDVHQFVTRRLEQFLVDKGISPEIVrsvlseranlPCLATKTAYKMEalskgqlfpkvveaysrptrivrgkdvdtaLEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELVQPLEDFFNHVFVMVKKesertglrcsrKLQTFQKALWICRFCLDFNSIQQFIKLSFFLKKKAVNNVQE

MailalplaisilKPRASHLSFFCAGNPSPSWFCLSPLCRRQFHRTSVCAITTSAIQEPPSTEPNNERQKASVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSEPVDLPCPKELLEAAVKKLPDDPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQQGNPTKAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQVMFSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKdknldlelalrlaadVQPITVDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELVQPLEDFFNHVFVMVKKESERTGLRCSRKLQTFQKALWICRFCLDFNSIQQFIKLSFFLKKKAVNNVQE

**ILALPLAISILKPRASHLSFFCAGNPSPSWFCLSPLCRRQFHRTSVCAITTS*********************FQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEP*********************FQVILK******QDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSEPVDLPCPKELLEAAVKKLPDDPRLFVLEIGT**************LKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLC***************************AVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQVMFSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKDKNLDLELALRLAADVQPITVDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELVQPLEDFFNHVFVMVKKESERTGLRCSRKLQTFQKALWICRFCLDFNSIQQFIKLSFFLKKK*******

*AILALPLAISILKPRASHLSFFCAGNPSPSWFCLSPLCRRQFHR*******************************QQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGI*************************RLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSE*E**ARGPPVSKAFDQQGNPTKAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQVMFSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKDKNLDLELALRLAADVQPITVDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELVQPLEDFFNHVFVMVKKESERTGLRCSRKLQTFQKALWICRFCLDFNSIQQFIKLSFFLKKKAVN****

MAILALPLAISILKPRASHLSFFCAGNPSPSWFCLSPLCRRQFHRTSVCAITTSAIQ*****************TFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSEPVDLPCPKELLEAAVKKLPDDPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQ**********PVSKAFDQQGNPTKAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQVMFSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKDKNLDLELALRLAADVQPITVDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELVQPLEDFFNHVFVMVKKESERTGLRCSRKLQTFQKALWICRFCLDFNSIQQFIKLSFFLKKKAVNNVQE

*AILALPLAISILKPRASHLSFFCAGNPSPSWFCLSPLCRRQFHRTSVCAITT******************SVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIV**********************DPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQQGNPTKAVEGFCQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQVMFSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKDKNLDLELALRLAADVQPITVDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELVQPLEDFFNHVFVMVKKESERTGLRCSRKLQTFQKALWICRFCLDFNSIQQFIKLSFFLKKKAVNN***

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1092	2.2.26 [Sep-21-2011]
Q8L785		1067	Glycine--tRNA ligase 2, c	yes	no	0.950	0.972	0.735	0.0
P0CE22		1003	Glycine--tRNA ligase OS=C	yes	no	0.864	0.941	0.346	1e-159
B0B923		1003	Glycine--tRNA ligase OS=C	yes	no	0.864	0.941	0.345	1e-158
Q9Z6W0		1010	Glycine--tRNA ligase OS=C	yes	no	0.775	0.838	0.357	1e-156
Q9PLC6		1003	Glycine--tRNA ligase OS=C	yes	no	0.802	0.873	0.350	1e-154
A4J7C9		695	Glycine--tRNA ligase beta	yes	no	0.619	0.972	0.348	1e-119
B8CXH5		686	Glycine--tRNA ligase beta	yes	no	0.590	0.940	0.361	1e-112
B1I1T4		688	Glycine--tRNA ligase beta	yes	no	0.597	0.949	0.362	1e-110
Q0AWT6		688	Glycine--tRNA ligase beta	yes	no	0.612	0.972	0.350	1e-108
Q2RKV5		694	Glycine--tRNA ligase beta	yes	no	0.589	0.927	0.341	1e-106

>sp\|Q8L785\|SYGM2_ARATH Glycine--tRNA ligase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLYRS-2 PE=1 SV=1	Back alignment and function desciption

 Score = 1602 bits (4149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 770/1047 (73%), Positives = 901/1047 (86%), Gaps = 9/1047 (0%)

Query: 1    MAIL--ALPLAISILKPRASHLSFFCAGNPSPSWFCLSPLCRRQFHRTSVCAITTSAIQE 58
            MAIL  +LPL +S L+P AS   F    + S S F    L RR+FHRTS  A++++A+  
Sbjct: 1    MAILHFSLPLIVSFLRPHASPRFFLLPRSLSQSPF----LSRRRFHRTS--AVSSAAVHH 54

Query: 59   PPSTEPNNERQKA-SVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLG 117
                 P+++  +A SVPTFQQAIQRLQEYWASVGC+VMQ SNTEVGAGTMNP TFLRVLG
Sbjct: 55   QSYRNPDDDVTRAVSVPTFQQAIQRLQEYWASVGCAVMQPSNTEVGAGTMNPCTFLRVLG 114

Query: 118  PEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVT 177
            PEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQ LFI SLSALGIDVT
Sbjct: 115  PEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQQLFINSLSALGIDVT 174

Query: 178  EHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERI 237
             HDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSL LSPVSVEITYGLERI
Sbjct: 175  AHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLPLSPVSVEITYGLERI 234

Query: 238  LMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLL 297
            +MLLQ VDHFKKI YADGITYGELFLENEKEMS+YYLEHA+V  LQK FD+F+EE+RSLL
Sbjct: 235  IMLLQEVDHFKKILYADGITYGELFLENEKEMSSYYLEHASVDRLQKHFDYFDEEARSLL 294

Query: 298  ASGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGH 357
            A GL IPAYDQLLKTSHAFNILD+RGF+GVTERARYFGRMRSLARQCAQLWL TR+SLGH
Sbjct: 295  ALGLPIPAYDQLLKTSHAFNILDARGFIGVTERARYFGRMRSLARQCAQLWLATRESLGH 354

Query: 358  PLGIVSEPVDLPCPKELLEAAVKKLPDDPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQL 417
            PLG+ SEPV   C +  LE   +K+ +DPR F++EIGTEEMPPQDV+NAS+QL+ L+L+L
Sbjct: 355  PLGVASEPVPPVCHRAALEKVAEKVSEDPRSFIIEIGTEEMPPQDVINASEQLRVLVLEL 414

Query: 418  LNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQQGNPTKAVEGF 477
            L  Q+L HG V+AFGTPRRLVV V+++  KQ E E E RGPP SKAFD +GNPTKA EGF
Sbjct: 415  LENQRLRHGAVKAFGTPRRLVVLVDAMSSKQLEEEVEVRGPPASKAFDDEGNPTKAAEGF 474

Query: 478  CQRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQV 537
             +RY VP++ L  K +GKTEYV+ARV E ARLALEVLSED+P I++K+SFPKSMRWNS V
Sbjct: 475  SRRYGVPLEKLYRKVSGKTEYVHARVTEPARLALEVLSEDLPGILAKISFPKSMRWNSSV 534

Query: 538  MFSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVK 597
            MFSRPIRW+MALHGD+VVPF FAG+ SGN+S GLRNT  A++ VQNAESY   MRN+G+ 
Sbjct: 535  MFSRPIRWVMALHGDLVVPFSFAGISSGNVSCGLRNTASASLLVQNAESYEDTMRNSGIN 594

Query: 598  IKIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDL 657
            I+IE+R+K I ++SNALAKSV+GR++  ++LLNEV NLVEAPVP++G+F++SFLELPE+L
Sbjct: 595  IEIEERKKIILEKSNALAKSVSGRLVVPQNLLNEVANLVEAPVPLIGKFKESFLELPEEL 654

Query: 658  LTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMD 717
            LT+VM+KHQKYF++ D+ G+LLPYFIAVANGAINE VV+KGNEAVLRARYEDAKFFYE+D
Sbjct: 655  LTIVMQKHQKYFSIIDESGQLLPYFIAVANGAINEDVVKKGNEAVLRARYEDAKFFYEVD 714

Query: 718  TRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAM 777
            TRK+F++F+ QL+GILFHEKLGTMLDK  R++ MV KL L L I+ED+L +V++AASLAM
Sbjct: 715  TRKRFSEFRDQLQGILFHEKLGTMLDKMNRLKKMVSKLCLALKIDEDLLPVVEDAASLAM 774

Query: 778  SDLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAV 837
            SDLAT+VV EFT+L+G+MA HYALRDGYS+QIAEALLEI LPRFSGDV+PKTD G VLA+
Sbjct: 775  SDLATAVVTEFTALSGIMARHYALRDGYSEQIAEALLEITLPRFSGDVIPKTDAGMVLAI 834

Query: 838  ADRLDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKDKNLDLELALRLAADVQPIT 897
             DRLD+LVGLFAAGCQPSSTNDPFGLRRISYGLVQIL+EKDKN++ +  L LAA VQP  
Sbjct: 835  GDRLDSLVGLFAAGCQPSSTNDPFGLRRISYGLVQILVEKDKNVNFKRVLELAASVQPTK 894

Query: 898  VDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQL 957
            V+A+T+ DV+QFVTRRLEQ LVD G+SPE+VRSVL+ER N PCLA +TAYK E LSKG++
Sbjct: 895  VEANTVEDVYQFVTRRLEQLLVDNGVSPEVVRSVLAERGNNPCLAARTAYKTEKLSKGEM 954

Query: 958  FPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFI 1017
            FPK+VEAYSRPTRIVRGKDV   +EVDE AFET +E+ LW+ Y S K++IH GI ++DF 
Sbjct: 955  FPKIVEAYSRPTRIVRGKDVGVGVEVDENAFETPQERTLWSTYTSIKDRIHTGIEIEDFT 1014

Query: 1018 EISSELVQPLEDFFNHVFVMVKKESER 1044
            EIS +LV+PLEDFFN+VFVMV++E  R
Sbjct: 1015 EISMQLVEPLEDFFNNVFVMVEEERVR 1041

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4

>sp\|P0CE22\|SYG_CHLTR Glycine--tRNA ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=glyQS PE=3 SV=1	Back alignment and function description

>sp\|B0B923\|SYG_CHLT2 Glycine--tRNA ligase OS=Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) GN=glyQS PE=3 SV=1	Back alignment and function description

>sp\|Q9Z6W0\|SYG_CHLPN Glycine--tRNA ligase OS=Chlamydia pneumoniae GN=glyQS PE=3 SV=2	Back alignment and function description

>sp\|Q9PLC6\|SYG_CHLMU Glycine--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=glyQS PE=3 SV=1	Back alignment and function description

>sp\|A4J7C9\|SYGB_DESRM Glycine--tRNA ligase beta subunit OS=Desulfotomaculum reducens (strain MI-1) GN=glyS PE=3 SV=1	Back alignment and function description

>sp\|B8CXH5\|SYGB_HALOH Glycine--tRNA ligase beta subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=glyS PE=3 SV=1	Back alignment and function description

>sp\|B1I1T4\|SYGB_DESAP Glycine--tRNA ligase beta subunit OS=Desulforudis audaxviator (strain MP104C) GN=glyS PE=3 SV=1	Back alignment and function description

>sp\|Q0AWT6\|SYGB_SYNWW Glycine--tRNA ligase beta subunit OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=glyS PE=3 SV=1	Back alignment and function description

>sp\|Q2RKV5\|SYGB_MOOTA Glycine--tRNA ligase beta subunit OS=Moorella thermoacetica (strain ATCC 39073) GN=glyS PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1092
255541030		1069	Glycyl-tRNA synthetase 2, chloroplast/mi	0.953	0.973	0.804	0.0
359489209		1071	PREDICTED: glycyl-tRNA synthetase 2, chl	0.953	0.971	0.795	0.0
449445495		1068	PREDICTED: glycine--tRNA ligase 2, chlor	0.954	0.975	0.753	0.0
356503250		1074	PREDICTED: glycyl-tRNA synthetase 2, chl	0.946	0.962	0.743	0.0
79436767		1067	glycyl-tRNA synthetase 2 [Arabidopsis th	0.950	0.972	0.735	0.0
4678317		1067	aminoacyl-t-RNA synthetase [Arabidopsis	0.950	0.972	0.734	0.0
2654226		1067	aminoacyl-t-RNA synthetase [Arabidopsis	0.950	0.972	0.733	0.0
297815990		1083	aminoacyl-t-RNA synthetase [Arabidopsis	0.950	0.958	0.723	0.0
357119010		1048	PREDICTED: glycyl-tRNA synthetase 2, chl	0.888	0.925	0.717	0.0
218197396		1068	hypothetical protein OsI_21278 [Oryza sa	0.906	0.926	0.691	0.0

>gi\|255541030\|ref\|XP_002511579.1\| Glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative [Ricinus communis] gi\|223548759\|gb\|EEF50248.1\| Glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1768 bits (4579), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 842/1046 (80%), Positives = 945/1046 (90%), Gaps = 5/1046 (0%)

Query: 1    MAILALPLAISILKPRASHLSFF--CAGNPSPSWFCLSPLCRRQFHRTSVCAITTSAIQE 58
            M+IL LPL IS LKP+   LS F   AG  +PS   L+   RR   +T+V AI+TSA+Q+
Sbjct: 1    MSILTLPLVISFLKPQTGCLSLFRLYAGRSNPSRLGLN---RRHLTKTTVSAISTSAVQQ 57

Query: 59   PPSTEPNNERQKASVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGP 118
              S  PN+E  KASVPTFQQAIQRLQEYWASVGC+VMQCSNTEVGAGTMNPLTFLRVLGP
Sbjct: 58   HSSAGPNSEPHKASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGP 117

Query: 119  EPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTE 178
            EPWNVAY EPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDV+E
Sbjct: 118  EPWNVAYAEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVSE 177

Query: 179  HDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERIL 238
            HDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSP+SVEITYGLERIL
Sbjct: 178  HDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPISVEITYGLERIL 237

Query: 239  MLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLA 298
            MLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHA+V H+QK FDFFEEE+R+LLA
Sbjct: 238  MLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHASVQHVQKHFDFFEEEARTLLA 297

Query: 299  SGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHP 358
            SGLAIPAYDQLLKTSHAFNILDSRGF+GVTERARYFGRMRSLARQCAQLWLKTR+SLGHP
Sbjct: 298  SGLAIPAYDQLLKTSHAFNILDSRGFIGVTERARYFGRMRSLARQCAQLWLKTRESLGHP 357

Query: 359  LGIVSEPVDLPCPKELLEAAVKKLPDDPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLL 418
            LG VSE V L   +E+L+AAVKK+ D PR FVLEIGTEEMPPQDVV+ASQQLKDL++QLL
Sbjct: 358  LGTVSETVHLASAEEVLDAAVKKVHDGPRSFVLEIGTEEMPPQDVVHASQQLKDLVVQLL 417

Query: 419  NKQKLSHGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQQGNPTKAVEGFC 478
             KQ+L HGEVQAFGTPRRLVV VESL  KQ E E E RGPPVSKAFD+QGNPTKA EGFC
Sbjct: 418  EKQRLRHGEVQAFGTPRRLVVCVESLSAKQPEIEVEVRGPPVSKAFDEQGNPTKAAEGFC 477

Query: 479  QRYAVPIDSLVTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQVM 538
            +RY +P+DSL  KA GKTEY+YARV E ARLALE+LS+D+P  IS++SFPK+MRWNSQVM
Sbjct: 478  RRYNIPLDSLFRKADGKTEYIYARVTEAARLALEILSKDLPVAISRISFPKTMRWNSQVM 537

Query: 539  FSRPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKI 598
            FSRPIRWIMALHGD+VVPF++AGVLSGN+SYGLRNTP ATV+V+NAESYA +MRNAG+ I
Sbjct: 538  FSRPIRWIMALHGDLVVPFIYAGVLSGNISYGLRNTPSATVEVENAESYASIMRNAGIHI 597

Query: 599  KIEDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLL 658
            +IE+R+++I + SNALAKSVNG II +E+LLNEVVNLVEAP PVLG+F++SFLELP+DLL
Sbjct: 598  EIEERKRSILEHSNALAKSVNGHIIIQENLLNEVVNLVEAPFPVLGKFKESFLELPKDLL 657

Query: 659  TVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDT 718
            T+VM+KHQKYFA+TD+ G+LLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDT
Sbjct: 658  TMVMQKHQKYFAVTDETGKLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDT 717

Query: 719  RKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMS 778
            RKKF++F+ QLKGILFHEKLGTMLDK  R++NMV KLS  LGI ED+LQ VQ+AASLAMS
Sbjct: 718  RKKFSEFRSQLKGILFHEKLGTMLDKMTRIENMVTKLSALLGIREDLLQTVQDAASLAMS 777

Query: 779  DLATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVA 838
            DLAT+VV EFTSL+G+MA HYALRDGYS+Q+AEALL+I LPRFSGDVLPKTDVG +LAVA
Sbjct: 778  DLATAVVTEFTSLSGIMARHYALRDGYSEQVAEALLDITLPRFSGDVLPKTDVGILLAVA 837

Query: 839  DRLDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKDKNLDLELALRLAADVQPITV 898
            DRLD+L+GLFAAGCQPSSTNDPFGLRRISYGLVQIL+EK++NLDL  ALRLAADVQPI V
Sbjct: 838  DRLDSLIGLFAAGCQPSSTNDPFGLRRISYGLVQILVEKERNLDLAHALRLAADVQPIKV 897

Query: 899  DASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLF 958
            DA  I+D +QFVTRRLEQ+LVDK ISPEIVRSVL+ERA LPCLA +TAYKME LS+G LF
Sbjct: 898  DAHLIDDAYQFVTRRLEQYLVDKEISPEIVRSVLAERATLPCLAARTAYKMETLSRGNLF 957

Query: 959  PKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIE 1018
            P+V+EAYSRPTRIVRGKDV + +EVDE AFET EE+ALW+++LS K+KI P I VD+F+E
Sbjct: 958  PEVIEAYSRPTRIVRGKDVVSDIEVDEAAFETAEERALWSIFLSTKSKIFPDIEVDEFVE 1017

Query: 1019 ISSELVQPLEDFFNHVFVMVKKESER 1044
            +SSEL+QPLEDFFN+VFVMV+ E  R
Sbjct: 1018 VSSELLQPLEDFFNNVFVMVEDERIR 1043

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359489209\|ref\|XP_002270774.2\| PREDICTED: glycyl-tRNA synthetase 2, chloroplastic/mitochondrial-like [Vitis vinifera] gi\|297734621\|emb\|CBI16672.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449445495\|ref\|XP_004140508.1\| PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356503250\|ref\|XP_003520424.1\| PREDICTED: glycyl-tRNA synthetase 2, chloroplastic/mitochondrial-like [Glycine max]	Back alignment and taxonomy information

>gi|79436767|ref|NP_190394.3| glycyl-tRNA synthetase 2 [Arabidopsis thaliana] gi|75154114|sp|Q8L785.1|SYGM2_ARATH RecName: Full=Glycine--tRNA ligase 2, chloroplastic/mitochondrial; AltName: Full=Glycyl-tRNA synthetase 2; Short=GlyRS 2; Flags: Precursor gi|22531150|gb|AAM97079.1| glycine--tRNA ligase precursor, chloroplast (edd1) [Arabidopsis thaliana] gi|45773748|gb|AAS76678.1| At3g48110 [Arabidopsis thaliana] gi|332644848|gb|AEE78369.1| glycyl-tRNA synthetase 2 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|4678317\|emb\|CAB41128.1\| aminoacyl-t-RNA synthetase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|2654226\|emb\|CAA05843.1\| aminoacyl-t-RNA synthetase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297815990\|ref\|XP_002875878.1\| aminoacyl-t-RNA synthetase [Arabidopsis lyrata subsp. lyrata] gi\|297321716\|gb\|EFH52137.1\| aminoacyl-t-RNA synthetase [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357119010\|ref\|XP_003561239.1\| PREDICTED: glycyl-tRNA synthetase 2, chloroplastic/mitochondrial-like, partial [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|218197396\|gb\|EEC79823.1\| hypothetical protein OsI_21278 [Oryza sativa Indica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1092
TAIR\|locus:2097885		1067	EDD1 "EMBRYO-DEFECTIVE-DEVELOP	0.934	0.955	0.732	0.0
UNIPROTKB\|Q9Z6W0		1010	glyQS "Glycine--tRNA ligase" [	0.884	0.956	0.336	8.6e-143
UNIPROTKB\|Q9PLC6		1003	glyQS "Glycine--tRNA ligase" [	0.812	0.884	0.347	2.9e-142
TIGR_CMR\|GSU_0578		292	GSU_0578 "glycyl-tRNA syntheta	0.260	0.976	0.614	6.1e-94
TIGR_CMR\|CHY_0439		290	CHY_0439 "glycyl-tRNA syntheta	0.260	0.982	0.603	2.5e-90
UNIPROTKB\|P00961		689	glyS "glycyl-tRNA synthetase,	0.604	0.957	0.331	3.1e-90
TIGR_CMR\|CBU_1913		319	CBU_1913 "glycyl-tRNA syntheta	0.265	0.909	0.559	3.6e-89
TIGR_CMR\|SO_0015		301	SO_0015 "glycyl-tRNA synthetas	0.265	0.963	0.567	8.6e-88
TIGR_CMR\|GSU_0579		687	GSU_0579 "glycyl-tRNA syntheta	0.593	0.943	0.339	3.7e-87
TIGR_CMR\|CHY_0440		690	CHY_0440 "glycyl-tRNA syntheta	0.596	0.943	0.317	6e-87

TAIR\|locus:2097885 EDD1 "EMBRYO-DEFECTIVE-DEVELOPMENT 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3941 (1392.4 bits), Expect = 0., P = 0.
 Identities = 754/1030 (73%), Positives = 880/1030 (85%)

Query:    23 FCAGNPSPSWFCL------SP-LCRRQFHRTSVCAITTSAIQEPPSTEPNNERQKA-SVP 74
             F   + SP +F L      SP L RR+FHRTS  A++++A+       P+++  +A SVP
Sbjct:    14 FLRPHASPRFFLLPRSLSQSPFLSRRRFHRTS--AVSSAAVHHQSYRNPDDDVTRAVSVP 71

Query:    75 TFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDD 134
             TFQQAIQRLQEYWASVGC+VMQ SNTEVGAGTMNP TFLRVLGPEPWNVAYVEPSIRPDD
Sbjct:    72 TFQQAIQRLQEYWASVGCAVMQPSNTEVGAGTMNPCTFLRVLGPEPWNVAYVEPSIRPDD 131

Query:   135 SRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLG 194
             SRYGENPNRLQRHTQFQVILKPDPGNSQ LFI SLSALGIDVT HDIRFVEDNWESPVLG
Sbjct:   132 SRYGENPNRLQRHTQFQVILKPDPGNSQQLFINSLSALGIDVTAHDIRFVEDNWESPVLG 191

Query:   195 AWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYAD 254
             AWGLGWEIWMDGMEITQFTYFQQAGSL LSPVSVEITYGLERI+MLLQ VDHFKKI YAD
Sbjct:   192 AWGLGWEIWMDGMEITQFTYFQQAGSLPLSPVSVEITYGLERIIMLLQEVDHFKKILYAD 251

Query:   255 GITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSH 314
             GITYGELFLENEKEMS+YYLEHA+V  LQK FD+F+EE+RSLLA GL IPAYDQLLKTSH
Sbjct:   252 GITYGELFLENEKEMSSYYLEHASVDRLQKHFDYFDEEARSLLALGLPIPAYDQLLKTSH 311

Query:   315 AFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSEPVDLPCPKEL 374
             AFNILD+RGF+GVTERARYFGRMRSLARQCAQLWL TR+SLGHPLG+ SEPV   C +  
Sbjct:   312 AFNILDARGFIGVTERARYFGRMRSLARQCAQLWLATRESLGHPLGVASEPVPPVCHRAA 371

Query:   375 LEAAVKKLPDDPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTP 434
             LE   +K+ +DPR F++EIGTEEMPPQDV+NAS+QL+ L+L+LL  Q+L HG V+AFGTP
Sbjct:   372 LEKVAEKVSEDPRSFIIEIGTEEMPPQDVINASEQLRVLVLELLENQRLRHGAVKAFGTP 431

Query:   435 RRLVVFVESLCQKQSENEFEARGPPVSKAFDQQGNPTKAVEGFCQRYAVPIDSLVTKAAG 494
             RRLVV V+++  KQ E E E RGPP SKAFD +GNPTKA EGF +RY VP++ L  K +G
Sbjct:   432 RRLVVLVDAMSSKQLEEEVEVRGPPASKAFDDEGNPTKAAEGFSRRYGVPLEKLYRKVSG 491

Query:   495 KTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWNSQVMFSRPIRWIMALHGDVV 554
             KTEYV+ARV E ARLALEVLSED+P I++K+SFPKSMRWNS VMFSRPIRW+MALHGD+V
Sbjct:   492 KTEYVHARVTEPARLALEVLSEDLPGILAKISFPKSMRWNSSVMFSRPIRWVMALHGDLV 551

Query:   555 VPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNAL 614
             VPF FAG+ SGN+S GLRNT  A++ VQNAESY   MRN+G+ I+IE+R+K I ++SNAL
Sbjct:   552 VPFSFAGISSGNVSCGLRNTASASLLVQNAESYEDTMRNSGINIEIEERKKIILEKSNAL 611

Query:   615 AKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDD 674
             AKSV+GR++  ++LLNEV NLVEAPVP++G+F++SFLELPE+LLT+VM+KHQKYF++ D+
Sbjct:   612 AKSVSGRLVVPQNLLNEVANLVEAPVPLIGKFKESFLELPEELLTIVMQKHQKYFSIIDE 671

Query:   675 KGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRKKFADFQGQLKGILF 734
              G+LLPYFIAVANGAINE VV+KGNEAVLRARYEDAKFFYE+DTRK+F++F+ QL+GILF
Sbjct:   672 SGQLLPYFIAVANGAINEDVVKKGNEAVLRARYEDAKFFYEVDTRKRFSEFRDQLQGILF 731

Query:   735 HEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLATSVVMEFTSLAGV 794
             HEKLGTMLDK  R++ MV KL L L I+ED+L +V++AASLAMSDLAT+VV EFT+L+G+
Sbjct:   732 HEKLGTMLDKMNRLKKMVSKLCLALKIDEDLLPVVEDAASLAMSDLATAVVTEFTALSGI 791

Query:   795 MACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQP 854
             MA HYALRDGYS+QIAEALLEI LPRFSGDV+PKTD G VLA+ DRLD+LVGLFAAGCQP
Sbjct:   792 MARHYALRDGYSEQIAEALLEITLPRFSGDVIPKTDAGMVLAIGDRLDSLVGLFAAGCQP 851

Query:   855 SSTNDPFGLRRISYGLVQILIEKXXXXXXXXXXXXXXXVQPITVDASTINDVHQFVTRRL 914
             SSTNDPFGLRRISYGLVQIL+EK               VQP  V+A+T+ DV+QFVTRRL
Sbjct:   852 SSTNDPFGLRRISYGLVQILVEKDKNVNFKRVLELAASVQPTKVEANTVEDVYQFVTRRL 911

Query:   915 EQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQLFPKVVEAYSRPTRIVRG 974
             EQ LVD G+SPE+VRSVL+ER N PCLA +TAYK E LSKG++FPK+VEAYSRPTRIVRG
Sbjct:   912 EQLLVDNGVSPEVVRSVLAERGNNPCLAARTAYKTEKLSKGEMFPKIVEAYSRPTRIVRG 971

Query:   975 KDVDTALEVDETAFETIEEKALWTVYLSAKNKIHPGINVDDFIEISSELVQPLEDFFNHV 1034
             KDV   +EVDE AFET +E+ LW+ Y S K++IH GI ++DF EIS +LV+PLEDFFN+V
Sbjct:   972 KDVGVGVEVDENAFETPQERTLWSTYTSIKDRIHTGIEIEDFTEISMQLVEPLEDFFNNV 1031

Query:  1035 FVMVKKESER 1044
             FVMV++E  R
Sbjct:  1032 FVMVEEERVR 1041

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004820 "glycine-tRNA ligase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006426 "glycyl-tRNA aminoacylation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009658 "chloroplast organization" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0045995 "regulation of embryonic development" evidence=IMP

UNIPROTKB\|Q9Z6W0 glyQS "Glycine--tRNA ligase" [Chlamydia pneumoniae (taxid:83558)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9PLC6 glyQS "Glycine--tRNA ligase" [Chlamydia muridarum Nigg (taxid:243161)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_0578 GSU_0578 "glycyl-tRNA synthetase, alpha subunit" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_0439 CHY_0439 "glycyl-tRNA synthetase, alpha subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

UNIPROTKB\|P00961 glyS "glycyl-tRNA synthetase, beta subunit" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

TIGR_CMR\|CBU_1913 CBU_1913 "glycyl-tRNA synthetase, alpha subunit" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_0015 SO_0015 "glycyl-tRNA synthetase, alpha subunit" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_0579 GSU_0579 "glycyl-tRNA synthetase, beta subunit" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_0440 CHY_0440 "glycyl-tRNA synthetase, beta subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L785	SYGM2_ARATH	6, ., 1, ., 1, ., 1, 4	0.7354	0.9505	0.9728	yes	no
B0B923	SYG_CHLT2	6, ., 1, ., 1, ., 1, 4	0.3456	0.8644	0.9411	yes	no
Q9PLC6	SYG_CHLMU	6, ., 1, ., 1, ., 1, 4	0.3509	0.8021	0.8733	yes	no
P0CE22	SYG_CHLTR	6, ., 1, ., 1, ., 1, 4	0.3466	0.8644	0.9411	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.1.1	0.983
4th Layer	6.1.1.14	0.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1092
PRK14908		1000	PRK14908, PRK14908, glycyl-tRNA synthetase; Provis	0.0
pfam02092		549	pfam02092, tRNA_synt_2f, Glycyl-tRNA synthetase be	0.0
PRK01233		682	PRK01233, glyS, glycyl-tRNA synthetase subunit bet	0.0
COG0751		691	COG0751, GlyS, Glycyl-tRNA synthetase, beta subuni	0.0
PRK09348		283	PRK09348, glyQ, glycyl-tRNA synthetase subunit alp	0.0
pfam02091		284	pfam02091, tRNA-synt_2e, Glycyl-tRNA synthetase al	0.0
cd00733		279	cd00733, GlyRS_alpha_core, Class II Glycyl-tRNA sy	0.0
TIGR00211		691	TIGR00211, glyS, glycyl-tRNA synthetase, tetrameri	1e-165
COG0752		298	COG0752, GlyQ, Glycyl-tRNA synthetase, alpha subun	1e-163
TIGR00388		293	TIGR00388, glyQ, glycyl-tRNA synthetase, tetrameri	1e-139
cd00768		211	cd00768, class_II_aaRS-like_core, Class II tRNA am	8e-12
pfam11685		269	pfam11685, DUF3281, Protein of unknown function (D	0.004

>gnl\|CDD\|237859 PRK14908, PRK14908, glycyl-tRNA synthetase; Provisional	Back alignment and domain information

 Score = 1084 bits (2805), Expect = 0.0
 Identities = 412/990 (41%), Positives = 587/990 (59%), Gaps = 28/990 (2%)

Query: 71   ASVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSI 130
            +   T Q  +  L  YW+  GC + Q  + EVGAGT NP TFLRVLGPEPW VAYVEPS 
Sbjct: 2    SQPLTMQDMLLALLRYWSEQGCIIHQGYDLEVGAGTFNPATFLRVLGPEPWRVAYVEPSR 61

Query: 131  RPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWES 190
            RPDD RYG+NPNRLQ +TQFQVILKP PGN Q+L++ SL A+GID+ +HDIRFV D+WE+
Sbjct: 62   RPDDGRYGQNPNRLQTYTQFQVILKPVPGNPQELYLESLKAIGIDLRDHDIRFVHDDWEN 121

Query: 191  PVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKI 250
            P +GAWGLGWE+W+DGMEITQFTYFQQAG   L P+S EITYG+ERI M LQ V+HFK I
Sbjct: 122  PTIGAWGLGWEVWLDGMEITQFTYFQQAGGKPLDPISGEITYGIERIAMYLQKVNHFKDI 181

Query: 251  QYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLL 310
             + DG+TYGE+F + E EMS Y  + AN     K F+ +  E+  LL +GL +PAYD +L
Sbjct: 182  AWNDGLTYGEIFQQAEYEMSRYNFDDANTEMWLKHFEDYAAEALRLLDAGLPVPAYDFVL 241

Query: 311  KTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSEPVDLPC 370
            K SHAFNILD+RG + VTER RY  R+R LAR  A L+++ R+ LG PL  V  P     
Sbjct: 242  KASHAFNILDARGAISVTERTRYIARIRQLARAVADLYVEWREELGFPLLKVPPPPAAVT 301

Query: 371  PKELLEAAVKKLPDDPRLFVLEIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQA 430
            PK+  +         P   + EIG+EE+P   V    QQL+  + +LL   +L + +++ 
Sbjct: 302  PKKTPD------ICGPETLLFEIGSEELPATFVPIGIQQLESALRELLADTRLGYEKLEV 355

Query: 431  FGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQQGNPTKAVEGFCQRYAVPIDSL-- 488
             GTPRRL + VE +  ++ + E E RGP +S AFD  G PT A EGF +   V I  L  
Sbjct: 356  LGTPRRLALLVEDVAPREPDAEREKRGPRLSAAFDADGTPTPAGEGFFRSQGVDISHLSA 415

Query: 489  -------VTKAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWN-SQVMFS 540
                     +     EY++    E  R A  +L+ ++P +I  L FPK MRW+   + ++
Sbjct: 416  LDQDGAIEIREINGVEYLFLVRPEPGRDAAAILANELPELIQSLRFPKKMRWDDPGLSYA 475

Query: 541  RPIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKI 600
            RPIRW++AL+GD +VP     + SG  + G R      V++ +A+ Y   +R A V +  
Sbjct: 476  RPIRWLVALYGDQIVPISVGTLASGRTTRGHRQLDPPPVEIPSADGYVETLRQACVILSP 535

Query: 601  EDRRKTIFDRSNALAKSVNGRIIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTV 660
            ++RR+ I      LA  V    I E  L++EV NLVE P  +LG+F++ FLELP++LL  
Sbjct: 536  KERREIIVQGLQNLAADVQIDAIAEPRLIDEVTNLVEHPFVILGQFDEKFLELPKELLIA 595

Query: 661  VMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYEMDTRK 720
             M KHQ+YF + D +G LL +F+ VA+G+ ++ +VR GNE VLRAR  D  F ++ D + 
Sbjct: 596  EMVKHQRYFPVRDAQGTLLNHFVIVADGSPDDEIVR-GNEKVLRARLTDGAFLFKADLKT 654

Query: 721  KFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDL 780
                F  +LK + + E LG++ DK  R++    +L+  L ++    + +  AA L   DL
Sbjct: 655  PLETFVEKLKSVTYFEALGSLADKVERIKAHAEELAALLPLSA--RETLDRAAELCKFDL 712

Query: 781  ATSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADR 840
             + +V EF  L G+M  +YA R G  + +A+AL E  LPR +GD LP +  G +L++ADR
Sbjct: 713  VSQMVNEFPELQGIMGRYYAQRAGEPEAVAQALGEHELPRTAGDSLPASTTGALLSLADR 772

Query: 841  LDTLVGLFAAGCQPSSTNDPFGLRRISYGLVQILIEKDKNLDLELALRLAADVQP---IT 897
            LD L+G FA G +P+S++DP+ LRR + G++ +L     +LDLE  L   A   P   + 
Sbjct: 773  LDNLLGCFALGLKPTSSSDPYALRRQALGVLTLLRATPASLDLEDLLARLARHFPSTTVW 832

Query: 898  VDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANLPCLATKTAYKMEALSKGQL 957
            V  + +++V +FV  RL+  L+D G   + + +VL +    P  A KTA  ++ L   ++
Sbjct: 833  VKEAVLDEVLEFVWGRLKTQLLDLGFDKDEIAAVLPDACKNPAEADKTAQALQELKSTEI 892

Query: 958  FPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVY--LSAKNKIHPGINVDD 1015
            F ++  A +R  RI+      +    D +      E  L         +    P I++ D
Sbjct: 893  FAEIAAALNRLKRILAS---LSFSVTDASLLLEPAELNLKQALDAFREELTELP-IDLKD 948

Query: 1016 FIEISSELVQPLEDFFNHVFVMVKKESERT 1045
            ++  ++EL Q +  FF+ V VM   E+ R 
Sbjct: 949  YVAAAAELPQAVNTFFDEVLVMADDEAIRN 978

Length = 1000

>gnl\|CDD\|216871 pfam02092, tRNA_synt_2f, Glycyl-tRNA synthetase beta subunit	Back alignment and domain information

>gnl\|CDD\|234925 PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	Back alignment and domain information

>gnl\|CDD\|223822 COG0751, GlyS, Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|236473 PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	Back alignment and domain information

>gnl\|CDD\|111033 pfam02091, tRNA-synt_2e, Glycyl-tRNA synthetase alpha subunit	Back alignment and domain information

>gnl\|CDD\|238375 cd00733, GlyRS_alpha_core, Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain	Back alignment and domain information

>gnl\|CDD\|232875 TIGR00211, glyS, glycyl-tRNA synthetase, tetrameric type, beta subunit	Back alignment and domain information

>gnl\|CDD\|223823 COG0752, GlyQ, Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|129483 TIGR00388, glyQ, glycyl-tRNA synthetase, tetrameric type, alpha subunit	Back alignment and domain information

>gnl\|CDD\|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain	Back alignment and domain information

>gnl\|CDD\|152121 pfam11685, DUF3281, Protein of unknown function (DUF3281)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1092
PRK14908		1000	glycyl-tRNA synthetase; Provisional	100.0
TIGR00211		691	glyS glycyl-tRNA synthetase, tetrameric type, beta	100.0
PRK01233		682	glyS glycyl-tRNA synthetase subunit beta; Validate	100.0
COG0751		691	GlyS Glycyl-tRNA synthetase, beta subunit [Transla	100.0
PF02092		548	tRNA_synt_2f: Glycyl-tRNA synthetase beta subunit;	100.0
TIGR00388		293	glyQ glycyl-tRNA synthetase, tetrameric type, alph	100.0
COG0752		298	GlyQ Glycyl-tRNA synthetase, alpha subunit [Transl	100.0
PRK09348		283	glyQ glycyl-tRNA synthetase subunit alpha; Validat	100.0
cd00733		279	GlyRS_alpha_core Class II Glycyl-tRNA synthetase (	100.0
PF02091		284	tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit	100.0
cd07956		156	Anticodon_Ia_Arg Anticodon-binding domain of argin	99.18
smart00836		122	DALR_1 DALR anticodon binding domain. This all alp	99.02
PF05746		119	DALR_1: DALR anticodon binding domain; InterPro: I	98.63
cd00768		211	class_II_aaRS-like_core Class II tRNA amino-acyl s	96.97
PRK13902		900	alaS alanyl-tRNA synthetase; Provisional	96.91
PRK01584		594	alanyl-tRNA synthetase; Provisional	96.62
TIGR03683		902	A-tRNA_syn_arch alanyl-tRNA synthetase. This famil	96.56
PRK00252		865	alaS alanyl-tRNA synthetase; Reviewed	96.51
TIGR00295		164	conserved hypothetical protein TIGR00295. This set	96.36
PRK12705		508	hypothetical protein; Provisional	96.07
PRK12704		520	phosphodiesterase; Provisional	95.88
TIGR00488		158	putative HD superfamily hydrolase of NAD metabolis	95.51
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	95.32
PRK07152		342	nadD putative nicotinate-nucleotide adenylyltransf	94.95
PF01966		122	HD: HD domain; InterPro: IPR006674 This domain is	94.88
PRK12703		339	tRNA 2'-O-methylase; Reviewed	94.84
smart00471		124	HDc Metal dependent phosphohydrolases with conserv	94.64
PLN02900		936	alanyl-tRNA synthetase	94.53
PRK00106		535	hypothetical protein; Provisional	94.41
COG0013		879	AlaS Alanyl-tRNA synthetase [Translation, ribosoma	93.71
cd00673		232	AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II	93.2
COG1418		222	Predicted HD superfamily hydrolase [General functi	91.29
cd00077		145	HDc Metal dependent phosphohydrolases with conserv	90.58
TIGR00277		80	HDIG uncharacterized domain HDIG. This domain is f	90.29
TIGR00344		851	alaS alanine--tRNA ligase. The model describes ala	89.53
TIGR00456		566	argS arginyl-tRNA synthetase. This model recognize	89.37
PRK12451		562	arginyl-tRNA synthetase; Reviewed	87.82
TIGR03401		228	cyanamide_fam HD domain protein, cyanamide hydrata	87.62
PTZ00326		494	phenylalanyl-tRNA synthetase alpha chain; Provisio	85.93
TIGR02367		453	PylS pyrrolysyl-tRNA synthetase. PylS is the archa	85.87
PRK04172		489	pheS phenylalanyl-tRNA synthetase subunit alpha; P	82.74
PRK09537		417	pylS pyrolysyl-tRNA synthetase; Reviewed	82.61
PRK10119		231	putative hydrolase; Provisional	82.44
TIGR03671		408	cca_archaeal CCA-adding enzyme.	80.4

>PRK14908 glycyl-tRNA synthetase; Provisional	Back alignment and domain information

Probab=100.00  E-value=0  Score=3140.46  Aligned_cols=984  Identities=42%  Similarity=0.713  Sum_probs=943.4

Q ss_pred             CcchHHHHHHHHHHHHhhcCceeeeccccccccccCCHHHHhhhcCCCcceEEeecCCCCCCCCCCCCCCccccceeeeE
Q 001359           72 SVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQ  151 (1092)
Q Consensus        72 ~~~~~q~~i~~l~~~w~~~gc~~~~p~~~e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~q  151 (1092)
                      ++|||||+|++||+||+++||+|+||||+|||||||||+||||+||||||++|||||||||+|||||+||||||||||||
T Consensus         3 ~~~~~q~~i~~l~~~w~~~gc~~~qp~~~e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~q   82 (1000)
T PRK14908          3 QPLTMQDMLLALLRYWSEQGCIIHQGYDLEVGAGTFNPATFLRVLGPEPWRVAYVEPSRRPDDGRYGQNPNRLQTYTQFQ   82 (1000)
T ss_pred             CcccHHHHHHHHHHHHHHCCCEEECCcccccccCcCCHHHHHhhcCCCCCcccccCCCCCCCCCCcCCCchhhhhheeeE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCcccccccccceeeecCeeeeeeehhhhcCCcccCcceeeeh
Q 001359          152 VILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEIT  231 (1092)
Q Consensus       152 vi~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgwevw~~gmeitqftyfqq~gg~~~~~~~~eit  231 (1092)
                      |||||||+|+|+|||+||++||||+++|||||||||||||||||||||||||||||||||||||||+||++|+||++|||
T Consensus        83 vi~kp~p~~~q~~yl~sl~~~gi~~~~~dirfved~we~p~lga~glgwevw~~gmeitqftyfqq~gg~~~~~~~~eit  162 (1000)
T PRK14908         83 VILKPVPGNPQELYLESLKAIGIDLRDHDIRFVHDDWENPTIGAWGLGWEVWLDGMEITQFTYFQQAGGKPLDPISGEIT  162 (1000)
T ss_pred             EEECCCCccHHHHHHHHHHHcCCCccccceeEeecCCCCCcccccccccEEEECCeeeeeeeeehhcCCeeccccceeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhCCCccceeeeCCCCceecccccchhhhhccccccCCHHHHHHHHHHHHHHHHHHHHcCCCcchhhhHHh
Q 001359          232 YGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLK  311 (1092)
Q Consensus       232 ygleri~m~~q~~~~~~~~~~~~~~~yg~~~~~~e~e~s~y~~~~~~~~~~~~~f~~~~~e~~~~~~~~l~~pay~~~lk  311 (1092)
                      |||||||||||+|||||||.||+++||||||+|+|+|||+||||+||+++|+++|++||+||++|++++||+||||||||
T Consensus       163 ygler~~m~~q~~~~~~~~~~~~~~~y~~~~~~~e~~~s~~~~~~~~~~~~~~~f~~~~~e~~~~~~~~l~~pay~~~~k  242 (1000)
T PRK14908        163 YGIERIAMYLQKVNHFKDIAWNDGLTYGEIFQQAEYEMSRYNFDDANTEMWLKHFEDYAAEALRLLDAGLPVPAYDFVLK  242 (1000)
T ss_pred             ccHHHHHHHHhCCCeeeeeecCCCCcchhhccccHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHhhhcCCCCCccchhh
Q 001359          312 TSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPLGIVSEPVDLPCPKELLEAAVKKLPDDPRLFVL  391 (1092)
Q Consensus       312 ~sh~fn~ldar~~~~~~er~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lLl  391 (1092)
                      |||+|||||||||||||||++||+|||+|||.||++|+++|+++||||+...+|++++++.      ..+.++++.+|||
T Consensus       243 ~sh~fn~ldar~~i~~~er~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~dlLl  316 (1000)
T PRK14908        243 ASHAFNILDARGAISVTERTRYIARIRQLARAVADLYVEWREELGFPLLKVPPPPAAVTPK------KTPDICGPETLLF  316 (1000)
T ss_pred             HHHHhhhhhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCCCCC------CCCCCCCccCEEE
Confidence            9999999999999999999999999999999999999999999999999765544332222      3446688999999


Q ss_pred             hhcccCCChHhHHHHHHHHHHHHHHHHHhCCCCCCcceeecccccceeeecccCccCcchhhhhcCCccccccccCCCCc
Q 001359          392 EIGTEEMPPQDVVNASQQLKDLMLQLLNKQKLSHGEVQAFGTPRRLVVFVESLCQKQSENEFEARGPPVSKAFDQQGNPT  471 (1092)
Q Consensus       392 EIGtEELPa~~l~~a~~ql~~~~~~~L~~~~L~~~~I~~f~TPRRLav~V~~l~~~q~d~~~e~kGPpv~~Afd~dG~pT  471 (1092)
                      |||||||||+++.++++||++.+.+.|++++|+|++|++|+|||||+|+|++|+++|+|.++++||||+++|||+||+||
T Consensus       317 EIGtEELPA~~~~~a~~ql~~~~~~~L~~~~L~~~~i~~f~TPRRLav~v~~l~~~q~d~~~e~kGP~~~~AfD~dG~pT  396 (1000)
T PRK14908        317 EIGSEELPATFVPIGIQQLESALRELLADTRLGYEKLEVLGTPRRLALLVEDVAPREPDAEREKRGPRLSAAFDADGTPT  396 (1000)
T ss_pred             EcccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcCceEEEecCcEeEEEecCCcccCCCceeeeeCCcHHHhCccCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCccCceE---------EEeCCeeEEEEEEEecchhHHHHHHHHHHHHHhcCCCCcccccC-CCCcccc
Q 001359          472 KAVEGFCQRYAVPIDSLVT---------KAAGKTEYVYARVKETARLALEVLSEDVPSIISKLSFPKSMRWN-SQVMFSR  541 (1092)
Q Consensus       472 kAa~GFak~~Gv~~~~L~~---------~~~~kgeYl~~~k~~~G~~t~eiL~~il~~~I~~L~fpKsMRWg-~~~~F~R  541 (1092)
                      ||++|||||||+++++|.+         ++++||+|+|++++++|++|.++|+++++++|++|||||+|||| ++++|+|
T Consensus       397 kAa~GFars~Gv~~~dL~~~~~~~~~~~~~~kg~eyl~~~k~~~G~~t~elL~eil~~~I~~L~fpKsMRWg~~~~~FvR  476 (1000)
T PRK14908        397 PAGEGFFRSQGVDISHLSALDQDGAIEIREINGVEYLFLVRPEPGRDAAAILANELPELIQSLRFPKKMRWDDPGLSYAR  476 (1000)
T ss_pred             HHHHHHHHHcCCCHHHHHHhhcccccccccCCCcEEEEEEEEECCeEHHHHHHHHHHHHHHcCCCCCcceeCCCCcEEec
Confidence            9999999999999999988         55555699999999999999999999999999999999999999 9999999


Q ss_pred             hhhhHHHHcCCceeeeEEcceeeCCcccccccCCCCcEEeCChhHHHHHHHhCCeeccHHHHHHHHHHHHHHHHHhcCCe
Q 001359          542 PIRWIMALHGDVVVPFMFAGVLSGNLSYGLRNTPLATVKVQNAESYAGVMRNAGVKIKIEDRRKTIFDRSNALAKSVNGR  621 (1092)
Q Consensus       542 PIrWIvaL~gd~VIp~~~~Gi~Sgn~T~GHRfl~~~~i~I~~a~~Y~~~L~~~~VIvd~~eRk~~I~~qi~~lA~~~g~~  621 (1092)
                      ||||||||||++||||+++||+|||+|+||||++++.|+|++|++|++.|++++||+|+++||++|++|++++|+++|++
T Consensus       477 PIrWIvaLlg~eVIp~~i~gi~Sg~~T~GHRfl~~~~i~I~~a~~Y~~~L~~~~VIvD~~eRr~~I~~qi~~la~~~g~~  556 (1000)
T PRK14908        477 PIRWLVALYGDQIVPISVGTLASGRTTRGHRQLDPPPVEIPSADGYVETLRQACVILSPKERREIIVQGLQNLAADVQID  556 (1000)
T ss_pred             hHHHHHHHcCCceeEEEEecEEecCcccccccCCCCCeEeCCHHHHHHHHHhCCEECCHHHHHHHHHHHHHHHHHHcCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCchHHHhhhcccCCceeecccCccCCCCcHHHHHHHHHhCcceeEEECCCCCccccEEEEEcCCCCchhhhchhhh
Q 001359          622 IIFEESLLNEVVNLVEAPVPVLGEFEDSFLELPEDLLTVVMKKHQKYFALTDDKGRLLPYFIAVANGAINEMVVRKGNEA  701 (1092)
Q Consensus       622 v~~de~LLeEVt~LVE~P~~l~G~Fde~FL~LP~EVLit~Mk~HQKYFpv~d~~GkLlp~FI~VsN~~~~~~~Vi~GNEr  701 (1092)
                      +..|++||||||+|||||++++|+||++||+||+|||||+|++|||||||+|++|+|+|+||+|+|+.++. .|++||||
T Consensus       557 v~~de~LLdEVt~LVE~P~al~G~Fde~FL~LP~EVLit~Mk~HQRYFpv~d~~G~Llp~FI~VsN~~~~~-~Vi~GNEr  635 (1000)
T PRK14908        557 AIAEPRLIDEVTNLVEHPFVILGQFDEKFLELPKELLIAEMVKHQRYFPVRDAQGTLLNHFVIVADGSPDD-EIVRGNEK  635 (1000)
T ss_pred             eCCCHHHHHHHHhccCCCeeeEEeeCHHHhCCCHHHHHHHHHHcceEEEEECCCCCccceEEEEECCCCcc-ceeecchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999998655 89999999


Q ss_pred             HhhhhcccchhhHHhhhcCChHHHHhcccCcccccCCCCHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhhhccc
Q 001359          702 VLRARYEDAKFFYEMDTRKKFADFQGQLKGILFHEKLGTMLDKTMRVQNMVRKLSLDLGINEDMLQIVQEAASLAMSDLA  781 (1092)
Q Consensus       702 VLrARL~DA~FFy~eDlK~~Le~~v~kLk~VvF~~kLGSl~DK~~Ri~~La~~La~~l~~~~~~~~~~~RAA~LaKaDL~  781 (1092)
                      ||||||+||+|||++|+|+||++|+++|++||||+|||||+|||+||++||.+||+.+|.+.+  ..+.|||.||||||+
T Consensus       636 VLrARL~DA~FF~~~DlK~~L~~~vekL~~VvFq~kLGS~~dKv~Ri~~La~~La~~l~~~~~--~~~~RAA~LsKaDLv  713 (1000)
T PRK14908        636 VLRARLTDGAFLFKADLKTPLETFVEKLKSVTYFEALGSLADKVERIKAHAEELAALLPLSAR--ETLDRAAELCKFDLV  713 (1000)
T ss_pred             hhHhHHhHHHHHHHHhccCCHHHHHHHhCceEeehhcCCHHHHHHHHHHHHHHHHHHhCCChh--HHHHHHHHHhhhhcc
Confidence            999999999999999999999999999999999999999999999999999999999998653  235899999999999


Q ss_pred             cchhhcChhhhHHHHHHHHHhCCCCHHHHHHHHhhcCCCCCCCCCCCcchhhHHHHhhhHHHHHHhhhcCCCCCCCCChh
Q 001359          782 TSVVMEFTSLAGVMACHYALRDGYSQQIAEALLEINLPRFSGDVLPKTDVGTVLAVADRLDTLVGLFAAGCQPSSTNDPF  861 (1092)
Q Consensus       782 T~MV~EFPELQGiMG~yYA~~~GE~~~VA~AI~EhYlPr~agD~LP~t~~G~iLSLADKlDtLvG~F~iG~~PTGSkDPf  861 (1092)
                      |+||+||||||||||+|||+++||+++||+||+|||+||++||+||+|++|++||||||||||+|||++|++||||+|||
T Consensus       714 T~MV~EFPELQGiMG~yYA~~~GE~~~VA~AI~EhYlPr~agD~LP~s~~G~ilalADKlDTLvG~FaiG~~PTGSkDPf  793 (1000)
T PRK14908        714 SQMVNEFPELQGIMGRYYAQRAGEPEAVAQALGEHELPRTAGDSLPASTTGALLSLADRLDNLLGCFALGLKPTSSSDPY  793 (1000)
T ss_pred             cchhccChHhhHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCHHHHHHHHHhhCC---CCcCccchhhHHHHHHHHHHHHHHhcCCCHHHHHHhhcCCCCC
Q 001359          862 GLRRISYGLVQILIEKDKNLDLELALRLAADVQP---ITVDASTINDVHQFVTRRLEQFLVDKGISPEIVRSVLSERANL  938 (1092)
Q Consensus       862 ALRRaAlGIIrILie~~l~l~L~~li~~a~~~~~---~~~~~~~~~ev~~F~~~RL~~~L~d~G~~~diV~AVL~~~~~~  938 (1092)
                      ||||+|+||||||++++++|||.+++++|++.++   ...+.++.++|++||.+||+++|.++|+++|+|+||++.+.++
T Consensus       794 ALRRaAlGIirIl~e~~l~l~L~~ll~~a~~~~~~~~~~~~~~~~~~l~~Fi~~Rl~~~l~d~G~~~dvI~AVl~~~~~~  873 (1000)
T PRK14908        794 ALRRQALGVLTLLRATPASLDLEDLLARLARHFPSTTVWVKEAVLDEVLEFVWGRLKTQLLDLGFDKDEIAAVLPDACKN  873 (1000)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999874   1113356778999999999999999999999999999988899


Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHhhhhhhccCCCCCCcCCCCcccCCCHHHHHHHHHHHHHhhhcCC-CCCHHHHH
Q 001359          939 PCLATKTAYKMEALSKGQLFPKVVEAYSRPTRIVRGKDVDTALEVDETAFETIEEKALWTVYLSAKNKIHP-GINVDDFI 1017 (1092)
Q Consensus       939 ~~~~~~r~~aL~~f~~~~~f~~l~~a~KRv~NIlkk~~~~~~~~vd~~ll~e~~E~~L~~a~~~~~~~~~~-~~~~~~~~ 1017 (1092)
                      |+++.+|+++|++|++.++|++++++||||.||++|.+   ...+|+++|++++|++||+++.++++.+.+ ..+|.+++
T Consensus       874 ~~~~~~r~~aL~~f~~~~~~~~l~~a~kRv~NIl~k~~---~~~vd~~Lf~~~~E~~L~~a~~~~~~~~~~~~~dy~~al  950 (1000)
T PRK14908        874 PAEADKTAQALQELKSTEIFAEIAAALNRLKRILASLS---FSVTDASLLLEPAELNLKQALDAFREELTELPIDLKDYV  950 (1000)
T ss_pred             HHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHhhcC---CCccChhhcCCHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            99999999999999999999999999999999999653   136999999999999999999999776654 25799999


Q ss_pred             HHHhhhchHHhhhhccccccCCCHHHHhhhhhhHHhhHHHHHHHHhhhccchHHH
Q 001359         1018 EISSELVQPLEDFFNHVFVMVKKESERTGLRCSRKLQTFQKALWICRFCLDFNSI 1072 (1092)
Q Consensus      1018 ~~l~~L~~~Id~FFD~VmVm~eD~~IR~N~~Ll~~L~ll~~i~~~f~~vaDfskL 1072 (1092)
                      ..|++|++|||+|||+||||+||++||+|     +|.+|+.+.++|..|+|||+|
T Consensus       951 ~~La~L~~~Id~FFD~VmVm~eD~~iR~N-----RLaLL~~i~~lf~~vaDfs~L 1000 (1000)
T PRK14908        951 AAAAELPQAVNTFFDEVLVMADDEAIRNA-----RLGLLAAIRDLKFGVLDWDAL 1000 (1000)
T ss_pred             HHHHhhhhHHHHHhCCCEeeCCCHHHHHH-----HHHHHHHHHHHHHhhcchhcC
Confidence            99999999999999999999999999999     333566677999999999986

>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit	Back alignment and domain information

>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated	Back alignment and domain information

>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF02092 tRNA_synt_2f: Glycyl-tRNA synthetase beta subunit; InterPro: IPR015944 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit	Back alignment and domain information

>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated	Back alignment and domain information

>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain	Back alignment and domain information

>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases	Back alignment and domain information

>smart00836 DALR_1 DALR anticodon binding domain	Back alignment and domain information

>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain	Back alignment and domain information

>PRK13902 alaS alanyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK01584 alanyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase	Back alignment and domain information

>PRK00252 alaS alanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00295 conserved hypothetical protein TIGR00295	Back alignment and domain information

>PRK12705 hypothetical protein; Provisional	Back alignment and domain information

>PRK12704 phosphodiesterase; Provisional	Back alignment and domain information

>TIGR00488 putative HD superfamily hydrolase of NAD metabolism	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated	Back alignment and domain information

>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []	Back alignment and domain information

>PRK12703 tRNA 2'-O-methylase; Reviewed	Back alignment and domain information

>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif	Back alignment and domain information

>PLN02900 alanyl-tRNA synthetase	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain	Back alignment and domain information

>COG1418 Predicted HD superfamily hydrolase [General function prediction only]	Back alignment and domain information

>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif	Back alignment and domain information

>TIGR00277 HDIG uncharacterized domain HDIG	Back alignment and domain information

>TIGR00344 alaS alanine--tRNA ligase	Back alignment and domain information

>TIGR00456 argS arginyl-tRNA synthetase	Back alignment and domain information

>PRK12451 arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family	Back alignment and domain information

>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional	Back alignment and domain information

>TIGR02367 PylS pyrrolysyl-tRNA synthetase	Back alignment and domain information

>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional	Back alignment and domain information

>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK10119 putative hydrolase; Provisional	Back alignment and domain information

>TIGR03671 cca_archaeal CCA-adding enzyme	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1092
1j5w_A		298	Crystal Structure Of Glycyl-Trna Synthetase Alpha C		3e-91
3rf1_A		311	The Crystal Structure Of Glycyl-Trna Synthetase Sub		7e-83

>pdb|1J5W|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase Alpha Chain (Tm0216) From Thermotoga Maritima At 1.95 A Resolution Length = 298

Back alignment and structure

Iteration: 1

Score = 333 bits (855), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 152/282 (53%), Positives = 204/282 (72%) Query: 77 QQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSR 136 Q I +L ++WAS GC + Q + EVGAGT +P TF L PW VAYV+PS RP D R Sbjct: 16 QDVIXKLNDFWASKGCLLEQPYDXEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGR 75 Query: 137 YGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAW 196 YGENPNRLQR+ Q+QVI+KP P NSQ+L++ SL LGI++ EHDIRFVEDNWESP LGAW Sbjct: 76 YGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAW 135 Query: 197 GLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYADGI 256 G+GWE+W+DG EITQFTYFQQ G + L + +EITYGLERI LQGVD+ ++Q+ + + Sbjct: 136 GVGWEVWLDGXEITQFTYFQQIGGISLKDIPLEITYGLERIAXYLQGVDNVYEVQWNENV 195 Query: 257 TYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSHAF 316 YG++FLENE+E S + E ANV L + FD +E+E L+ L +PAYD +LK SH F Sbjct: 196 KYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLYLPAYDYILKCSHTF 255 Query: 317 NILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHP 358 N+LD+RG + V++R Y R+++ AR+ A+++L+ + + P Sbjct: 256 NLLDARGAISVSQRQTYVKRIQAXARKAARVFLEVQANENSP 297

PyMOL of 1j5w

>pdb|3RF1|A Chain A, The Crystal Structure Of Glycyl-Trna Synthetase Subunit Alpha From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 Length = 311

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1092
1j5w_A		298	Glycyl-tRNA synthetase alpha chain; structural gen	1e-159
3rf1_A		311	Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA	1e-153
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
2pq7_A		220	Predicted HD superfamily hydrolase; 104161995, HD	6e-04

>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 Length = 298	Back alignment and structure

 Score =  471 bits (1214), Expect = e-159
 Identities = 154/291 (52%), Positives = 207/291 (71%)

Query: 68  RQKASVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVE 127
                    Q  I +L ++WAS GC + Q  + EVGAGT +P TF   L   PW VAYV+
Sbjct: 7   HHHHHHMYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQ 66

Query: 128 PSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDN 187
           PS RP D RYGENPNRLQR+ Q+QVI+KP P NSQ+L++ SL  LGI++ EHDIRFVEDN
Sbjct: 67  PSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDN 126

Query: 188 WESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHF 247
           WESP LGAWG+GWE+W+DGMEITQFTYFQQ G + L  + +EITYGLERI M LQGVD+ 
Sbjct: 127 WESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQGVDNV 186

Query: 248 KKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYD 307
            ++Q+ + + YG++FLENE+E S +  E ANV  L + FD +E+E   L+   L +PAYD
Sbjct: 187 YEVQWNENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLYLPAYD 246

Query: 308 QLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHP 358
            +LK SH FN+LD+RG + V++R  Y  R++++AR+ A+++L+ + +   P
Sbjct: 247 YILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQANENSP 297

PyMOL of 1j5w

>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A* Length = 311	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Length = 220	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1092
1j5w_A		298	Glycyl-tRNA synthetase alpha chain; structural gen	100.0
3rf1_A		311	Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA	100.0
2ztg_A		739	Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy	100.0
2zze_A		752	Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML	96.48
1yfs_A		465	Alanyl-tRNA synthetase; alpha-beta fold, helix-loo	96.38
3dsq_A		288	Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t	96.38
2o08_A		188	BH1327 protein; putative HD superfamily hydrolase,	95.84
3hy0_A		441	Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase,	95.78
2ogi_A		196	Hypothetical protein SAG1661; structural genomics,	95.73
3ccg_A		190	HD superfamily hydrolase; NP_347894.1, HD domain,	95.52
3dto_A		223	BH2835 protein; all alpha-helical protein, structu	95.34
2pq7_A		220	Predicted HD superfamily hydrolase; 104161995, HD	95.25
3b57_A		209	LIN1889 protein; Q92AN1, X-RAY, NESG, structural g	94.46
3qtc_A		290	Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet	94.33
2pjq_A		231	Uncharacterized protein LP_2664; LPR71, NESG, stru	94.33
3tm8_A		328	BD1817, uncharacterized protein; HD-GYP, phosphodi	94.13
3hc1_A		305	Uncharacterized HDOD domain protein; HDOD domain p	94.03
3djb_A		223	Hydrolase, HD family; all alpha-helical protein.,	92.82
1vqr_A		297	Hypothetical protein CJ0248; HD-domain/pdease-like	92.12
3m1t_A		275	Putative phosphohydrolase; structural genomics, jo	92.0
2qgs_A		225	Protein Se1688; alpha-helical protein, structural	91.03
3i7a_A		281	Putative metal-dependent phosphohydrolase; YP_9268	90.65
1ati_A		505	Glycyl-tRNA synthetase; protein biosynthesis, liga	89.11
3gw7_A		239	Uncharacterized protein YEDJ; all alpha-helical pr	88.98
2du3_A		534	O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l	85.07
1f7u_A		607	Arginyl-tRNA synthetase; RNA-protein complex, amin	83.78
3ljx_A		288	MMOQ response regulator; structural genomics, PSI-	83.68
3mem_A		457	Putative signal transduction protein; structural g	80.87

>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1	Back alignment and structure

Probab=100.00  E-value=1.4e-163  Score=1281.51  Aligned_cols=289  Identities=53%  Similarity=0.969  Sum_probs=275.7

Q ss_pred             CCcchHHHHHHHHHHHHhhcCceeeeccccccccccCCHHHHhhhcCCCcceEEeecCCCCCCCCCCCCCCccccceeee
Q 001359           71 ASVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQF  150 (1092)
Q Consensus        71 ~~~~~~q~~i~~l~~~w~~~gc~~~~p~~~e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~  150 (1092)
                      +..|+||+||++||+||++|||+|+||||+|||||||||+||||+||||||+||||||||||+|||||||||||||||||
T Consensus        10 ~~~~~fQ~iIl~Lq~fWa~~GC~i~QpyD~EvGAGT~~PaTfLRaLGpepw~~AYVqPsRRP~DGRYGeNPNRLq~y~Qf   89 (298)
T 1j5w_A           10 HHHMYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQY   89 (298)
T ss_dssp             ---CCHHHHHHHHHHHHHHTTCEECCCCSSCCSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTTCCSEEEEE
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCEEEcCcccccccccCCHHHHHHhcCCCcceeeeeccCCCCCCCCcCCCchhhhhheee
Confidence            44599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCcccccccccceeeecCeeeeeeehhhhcCCcccCcceeee
Q 001359          151 QVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEI  230 (1092)
Q Consensus       151 qvi~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgwevw~~gmeitqftyfqq~gg~~~~~~~~ei  230 (1092)
                      ||||||||+|+|||||+||++||||+++||||||||||||||||||||||||||||||||||||||||||++|+||++||
T Consensus        90 QVilKPsP~niQeLYL~SL~alGid~~~HDIRFVEDnWEsPTLGAwGLGWEVWldGMEITQFTYFQQvGGi~c~pv~~EI  169 (298)
T 1j5w_A           90 QVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEI  169 (298)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEEETTEEEEEEEEEEEBTTBCCSSCCEEE
T ss_pred             EEEECCCCccHHHHHHHHHHHhCCCcccCCceeeccCCCCCccccccccceeeEcceeeehhhhhhhcCCcccCccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHhCCCccceeeeCCCCceecccccchhhhhccccccCCHHHHHHHHHHHHHHHHHHHHcCCCcchhhhHH
Q 001359          231 TYGLERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLL  310 (1092)
Q Consensus       231 tygleri~m~~q~~~~~~~~~~~~~~~yg~~~~~~e~e~s~y~~~~~~~~~~~~~f~~~~~e~~~~~~~~l~~pay~~~l  310 (1092)
                      ||||||||||||+|||||||.||+++||||||+|+|+|+|+||||+||+++|+++|++||+||++|++++|++||||+||
T Consensus       170 TYGLERiamylQ~vd~vydl~w~~~vtYGdvf~q~E~E~S~ynFe~ad~~~L~~~F~~yE~E~~~ll~~~L~lPAYd~~L  249 (298)
T 1j5w_A          170 TYGLERIAMYLQGVDNVYEVQWNENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLYLPAYDYIL  249 (298)
T ss_dssp             EEEHHHHHHHHHTCSSGGGCEEETTEEHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHhCCCceeccccCCCCceehhhcccHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 001359          311 KTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKSLGHPL  359 (1092)
Q Consensus       311 k~sh~fn~ldar~~~~~~er~~~~~~~r~l~~~~~~~~~~~~~~~~~~~  359 (1092)
                      ||||+|||||||||||||||++||+|||+|||+||++|+++|+++||||
T Consensus       250 K~SH~FNlLDARgaISvtER~~yI~rvR~la~~~a~~y~~~r~~~g~pl  298 (298)
T 1j5w_A          250 KCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQANENSPA  298 (298)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHhHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999999999999999999999997

PyMOL of 1j5w

>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*	Back alignment and structure

>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}	Back alignment and structure

>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*	Back alignment and structure

>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A	Back alignment and structure

>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A	Back alignment and structure

>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}	Back alignment and structure

>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*	Back alignment and structure

>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}	Back alignment and structure

>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}	Back alignment and structure

>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1	Back alignment and structure

>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1	Back alignment and structure

>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1	Back alignment and structure

>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*	Back alignment and structure

>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1	Back alignment and structure

>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A	Back alignment and structure

>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}	Back alignment and structure

>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1	Back alignment and structure

>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3	Back alignment and structure

>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0	Back alignment and structure

>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1	Back alignment and structure

>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}	Back alignment and structure

>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*	Back alignment and structure

>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}	Back alignment and structure

>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*	Back alignment and structure

>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*	Back alignment and structure

>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A	Back alignment and structure

>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1092
d1j5wa_		281	d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alph	1e-159

>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} Length = 281	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS) alpha chain
species: Thermotoga maritima [TaxId: 2336]

 Score =  471 bits (1213), Expect = e-159
 Identities = 153/280 (54%), Positives = 206/280 (73%)

Query: 75  TFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDD 134
             Q  I +L ++WAS GC + Q  + EVGAGT +P TF   L   PW VAYV+PS RP D
Sbjct: 2   YLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTD 61

Query: 135 SRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLG 194
            RYGENPNRLQR+ Q+QVI+KP P NSQ+L++ SL  LGI++ EHDIRFVEDNWESP LG
Sbjct: 62  GRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLG 121

Query: 195 AWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYGLERILMLLQGVDHFKKIQYAD 254
           AWG+GWE+W+DGMEITQFTYFQQ G + L  + +EITYGLERI M LQGVD+  ++Q+ +
Sbjct: 122 AWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQGVDNVYEVQWNE 181

Query: 255 GITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTSH 314
            + YG++FLENE+E S +  E ANV  L + FD +E+E   L+   L +PAYD +LK SH
Sbjct: 182 NVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLYLPAYDYILKCSH 241

Query: 315 AFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKS 354
            FN+LD+RG + V++R  Y  R++++AR+ A+++L+ + +
Sbjct: 242 TFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQAN 281

PyMOL of d1j5wa_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1092
d1j5wa_		281	Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermo	100.0
d1riqa2		236	Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [	97.45
d1f7ua1		124	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	96.29
d2pjqa1		215	Uncharacterized protein LP2664 {Lactobacillus plan	95.51
d2pq7a1		217	Predicted hydrolase mes0020 {Uncultured thermotoga	94.14
d3b57a1		201	Uncharacterized protein Lin1889 {Listeria innocua	93.56
d2qgsa1		216	Uncharacterized protein SE1688 {Staphylococcus epi	93.46
d3dtoa1		212	Uncharacterized protein BH2835 {Bacillus haloduran	89.05
d3djba1		213	Uncharacterized protein BT9727_1981 {Bacillus thur	88.9

>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS) alpha chain
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=7.8e-162  Score=1270.41  Aligned_cols=281  Identities=54%  Similarity=0.995  Sum_probs=274.6

Q ss_pred             chHHHHHHHHHHHHhhcCceeeeccccccccccCCHHHHhhhcCCCcceEEeecCCCCCCCCCCCCCCccccceeeeEEE
Q 001359           74 PTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVI  153 (1092)
Q Consensus        74 ~~~q~~i~~l~~~w~~~gc~~~~p~~~e~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~qvi  153 (1092)
                      |+|||||++||+||+++||+|+||||+|||||||||+||||+||||||++|||||||||+|||||+||||||||||||||
T Consensus         1 m~fq~~i~~L~~~W~~~gC~i~qpyd~evGAgT~~p~T~lr~lgp~pw~~ayvqpsrRP~DgRYg~NPNRlq~y~QfQVi   80 (281)
T d1j5wa_           1 MYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQYQVI   80 (281)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEECCCCSSCCSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTTCCSEEEEEEEE
T ss_pred             CcHHHHHHHHHHHHHHCCCEEECCcccccccccCChHHHHhhcCCCCccccccccccCCccccccCCcchhhhhhheeee
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCcchHHHHHHHHHhcCCCCCCCceeEecCCCCCcccccccccceeeecCeeeeeeehhhhcCCcccCcceeeehhh
Q 001359          154 LKPDPGNSQDLFIRSLSALGIDVTEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLQLSPVSVEITYG  233 (1092)
Q Consensus       154 ~kp~p~~~q~lyl~sl~~~gi~~~~hdirfved~we~p~lgawglgwevw~~gmeitqftyfqq~gg~~~~~~~~eityg  233 (1092)
                      |||||+|+|+|||+||++||||+++||||||||||||||||||||||||||||||||||||||||||++|+|||+|||||
T Consensus        81 ~KPsp~n~q~lyL~SL~~igid~~~hDIrfvEDnWEsPtlGAwGlGWEVwldGMEItQFTYFQQvGg~~c~pv~~EiTYG  160 (281)
T d1j5wa_          81 IKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYG  160 (281)
T ss_dssp             EESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEEETTEEEEEEEEEEEBTTBCCSSCCEEEEEE
T ss_pred             ecCCcccHHHHHHHHHHHcCCCccccceEEEeccCcCCcccceeeeeEEEEcCeeeeeeehhhhhcCccccccchhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhCCCccceeeeCCCCceecccccchhhhhccccccCCHHHHHHHHHHHHHHHHHHHHcCCCcchhhhHHhhh
Q 001359          234 LERILMLLQGVDHFKKIQYADGITYGELFLENEKEMSAYYLEHANVHHLQKQFDFFEEESRSLLASGLAIPAYDQLLKTS  313 (1092)
Q Consensus       234 leri~m~~q~~~~~~~~~~~~~~~yg~~~~~~e~e~s~y~~~~~~~~~~~~~f~~~~~e~~~~~~~~l~~pay~~~lk~s  313 (1092)
                      |||||||||+|||||||.||++|||||||+|+|+|||+||||+||+++|+++|++||+||++|++++|++||||+|||||
T Consensus       161 LERiaMylQ~vd~v~Dl~wn~~vtYgDvf~q~E~E~S~YNFE~Ad~~~L~~~F~~yE~Ea~~Lle~~L~lPAYD~~LKaS  240 (281)
T d1j5wa_         161 LERIAMYLQGVDNVYEVQWNENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLYLPAYDYILKCS  240 (281)
T ss_dssp             HHHHHHHHHTCSSGGGCEEETTEEHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcchheeeeccCCcchHHHHHHhHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccccCCcchhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 001359          314 HAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWLKTRKS  354 (1092)
Q Consensus       314 h~fn~ldar~~~~~~er~~~~~~~r~l~~~~~~~~~~~~~~  354 (1092)
                      |+|||||||||||||||++||+|||+|||+||++|+++|++
T Consensus       241 H~FNLLDARGaISVTERa~YI~RIR~LAk~~a~~yle~r~n  281 (281)
T d1j5wa_         241 HTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQAN  281 (281)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999974

PyMOL of d1j5wa_

>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]}	Back information, alignment and structure

>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]}	Back information, alignment and structure

>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]}	Back information, alignment and structure

>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]}	Back information, alignment and structure

>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]}	Back information, alignment and structure