Citrus Sinensis ID: 001365

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090--
Protein Sequence
MADSRRFALGNQLDIEQILIEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWMLEEELSHIVLVHYREVKGNRTNFNRAKVAEGATPYSQENEETIPNSEVEGSQSSGFHPNSYQMPSQTADTSLNSAQASEYEDAESVYNNQASSRFHSFLDLQQPVAEKIDAGLADPYYPSSLTNNYQGKFSVVPGADFISPAQTDKSRNSNDTGLTYEPQKNLDFPSWEDVLQNCSQGVGSQPEALGDIPNQGYDILGEPFTNSFGERKEFGSHLQTRGEWQASRNDSSHLSNWPMDQKVYLDSAHDLTSQSCEQGAAHDGLLDSLRPPHAHPNMENDVHEQLPNAEHGHLLKSDPESSLTIDGKSFYSSAIKQHLIDGSTEGLKKLDSFNRWMSKELGDVKESNMQSSSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGATAVQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNATQAAARIHQVFRVQSFQKKQLKEYGNDTFGISDERALSLVAVKTQKPGHHDEPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETLTASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQETKAMALSNAEETADFDDDLVDIEALLDDTLMPNAS
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccEEEEEcHHHHHHcccccccEEccccccHHHHHHHcccccEEEEEEEEEcccccccHHHHHccccccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccEEEEEEccccccccccccccEEEEEccccccEEEEccccEEEEccccccccccEEEEEcccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHccHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHcccHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccEEEEEccEEEEEEEccccccEEcccccccHHHHHHHccccEEEEEEEEEcccccccHHHHHHHHHccccccEEEEEEEEccccccccccccccccccccccccHccccHHHHHHHccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEEEccccccccccccccEEEEEcccEccHHEEcccEEEEEccccccccEEEEEEEcccEEcccEEEEEEccccccccccccccccccHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccEEEccEEEccEEEccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
madsrrfaLGNQLDIEQILIEAQHRWLRPAEICEILRNYtkfriapesphtppsgslflfdRKVLRYFRkdghnwrkkkdgktVKEAHERLKAGSVDVLHCYYahgeenenfQRRSYWMLEEELSHIVLVHYRevkgnrtnfnrakvaegatpysqeneetipnsevegsqssgfhpnsyqmpsqtadtslnsaqaseyedaesvynnqassrfhsfldlQQPVAEKidagladpyypssltnnyqgkfsvvpgadfispaqtdksrnsndtgltyepqknldfpswEDVLQNcsqgvgsqpealgdipnqgydilgepftnsfgerkefgshlqtrgewqasrndsshlsnwpmdqkvyldsahdltsqsceqgaahdglldslrpphahpnmendvheqlpnaehghllksdpessltidgksfYSSAIKQHLIDGSTEGLKKLDSFNRWMSKElgdvkesnmqsssgaywetvesengvddsgvspqarldtymmspslsqdqlysiidfspnwayvSSEVKVLITGRFLMSQqeaenckwscmfgeievpaeIVAGGVlrchtssqkvgrvpfyvtcsnrlscsevrefeyrashipdvdvadncgditsenLRMQFGKLLCltsvstpnydpsnlsdisQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKaaeggkgpcvldhcgqGVLHFAAALgydwalepttvagvninfrdvngwTALHWAAYCGRERTVASLIALgaapgalsdptpkypsgrtpadlassighkgiAGYLAESDLSSALSAISlnkkdgdvaevtgatavqtvpqrcptpvsdgdlpyglsmKDSLAAVRNATQAAARIHQVFRVQSFQKKQLKeygndtfgisDERALSLVAvktqkpghhdepvHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRrrgsglrgfksetltASSSMVatsakeddydFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQETKAMALSnaeetadfdddLVDIEALLddtlmpnas
Flexible Loop (DISEMBL)
madsrrfalgnqLDIEQILIEaqhrwlrpAEICEILRNYTKFRiapesphtppsgslflfDRKVLRYfrkdghnwrkkkdgktvkeaherlkagsvdvLHCYYAHGEENENFQRRSYWMLEEELSHIVLVHYrevkgnrtnfnrakvaegatpysqeneeTIPNSEVEGSQSSGFHPNSYQMPSQTADTSLNSAQASEYEDAESVYNNQASSRFHSFLDLQQPVAEKIDAGLADPYYPSSLTNNYQGKFSVVPGADFIspaqtdksrnsndTGLTYEPQKNLDFPSWEDVLQNCSQGVGSQPEALGDIPNQGYDILGEPFTNSFGERKEFGSHLQTRGEWQASRNDSSHLSNWPMDQKVYLDSAHDLTSQSCEQGAAHDGLLDSLRPPHAHPNMENDVHEQLPNAEHGHLLKSDPESSLTIDGKSFYSSAIKQHLIDGSTEGLKKLDSFNRWMSKElgdvkesnmqSSSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTssqkvgrvpfyvTCSNRLSCSEVREFEYrashipdvdvaDNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAeekfsseeVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGatavqtvpqrcptpvsDGDLPYGLSMKDSLAAVRNATQAAARIHQVFRVQSFQKKQLKEYGNDTFGISDERALSLVAVKTqkpghhdepvhAAATriqnkfrswkgrkdFLIIRKQIIKiqayvrghqvrknykkiiwsvgimekIILRwrrrgsglrgfksetltasssmvatsakeddydFLKEGRKQKEERLQKALARVKsmvqypeardQYRRLLNVVNEIQETKAMALSNAEETADFDDDLVDIEALlddtlmpnas
Low Complexity Region (SEG)
MADSRRFALGNQLDIEQILIEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWMLEEELSHIVLVHYREVKGNRTNFNRAKVAEGATPYSQENEETIPNSEVEGSQSSGFHPNSYQMPSQTADTSLNSAQASEYEDAESVYNNQASSRFHSFLDLQQPVAEKIDAGLADPYYPSSLTNNYQGKFSVVPGADFISPAQTDKSRNSNDTGLTYEPQKNLDFPSWEDVLQNCSQGVGSQPEALGDIPNQGYDILGEPFTNSFGERKEFGSHLQTRGEWQASRNDSSHLSNWPMDQKVYLDSAHDLTSQSCEQGAAHDGLLDSLRPPHAHPNMENDVHEQLPNAEHGHLLKSDPESSLTIDGKSFYSSAIKQHLIDGSTEGLKKLDSFNRWMSKELGDVKESNMQSSSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAeekfsseevkeklvqkllkeklqvwlvqkAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYlaesdlssalsaislNKKDGDVAEVTGATAVQTVPQRCPTPVSDGDLPYGLSMKDSLaavrnatqaaaRIHQVFRVQSFQKKQLKEYGNDTFGISDERALSLVAVKTQKPGHHDEPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIIlrwrrrgsglrgFKSETLTASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQETKAMALSNAEETADFDDDLVDIEALLDDTLMPNAS
Disordered region (IsUnstruct)
******FALGNQLDIEQILIEAQHRWLRPAEICEILRNYTKFRIA**********SLFLFDRKVLRYFRKDGHNWRK***********ERLKAGSVDVLHCYYAHGEENENFQRRSYWMLEEELSHIVLVHYREVKGNRTNF*************************************************************************SFLDLQQPVAEKIDAGLADPYYPSSLTNNYQGKFSVVPGADF****************************SWEDVLQNC****************QGYDILGE************************************************************************************************************Y**AIKQHLI********************************************************************DQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRMQFGKLLCLTSVST***************************DWDLMLKLT***********EKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA***************************GIAGYLA**********************VTGATAVQ***************PYGLSMKDSLAAVRNATQAAARIHQVFRVQSFQKKQLKEYGNDTFGISDERALSLVAVK***********HAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLR*************************************************Y***RDQYRRLLNVVNEIQET*************FDDDLVDIEALL*********
Disordered Region (DISOPRED)
*********GNQLDIEQILIEAQHRWLRPAEICEILRNYTKFRIAP****TPPSGSLFLFDRKVLRYFRKDGHNWRKKK*****KEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWMLEEELSHIVLVHYREVKGN************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRMQFGKLLCLTSVSTPNY**S**SDISQLNSKISSLLKDENDDWDLMLK**A***FSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD********************TGATAVQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNATQAAARIHQVFRVQSFQKKQLKEYGNDTFGISDERALSLVAVK********EPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRG*****************************LKEGRKQKEERLQKALARVKSMVQYPEARDQYRRLLNV***********************DLVDIEALLDDTLMPN**
Disordered Region (DISEMBL)
MADSRRFALGNQLDIEQILIEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLFDRKVLRYFRKDGHN*************HERLKAGSVDVLHCYYAHGEENENFQRRSYWMLEEELSHIVLVHYREVKGNRTNFNRAKVAEGA***********************FHPNSY***********************SVYNNQASSRFHSFLDLQQPVAEKIDAGLADPYYPSSLTNNYQGKFSVVPGADFISPAQTDKSRNSNDTGLTYEPQKNLDFPSWEDVLQNCSQGVGSQPEALGDIPNQGYDILGEPFTNSFGERKE*******************HLSNWPMDQKVYLDSAHDLTSQSCEQGAAHDGLLDSLRPPHAHPNMENDVHEQLPNAEHGHLLKSDPESSLTIDGKSFYSSAIKQHLIDGSTEGLKKLDSFNRWMSKELGDV*************************GVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGATAVQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNATQAAARIHQVFRVQSFQKKQLKEYGNDTFGISDERALSLVAVK**********VHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETLTASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQETKAMALSNAEETADFDDDLVDIEALLDDTLMPNAS
Disordered Region (DISPRO)
*****RFALGNQLDIEQILIEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWMLEEELSHIVLVHYREVKGN***FNRAKVAE**********ETIP*SEVEGSQSSGFHPN***M*******SLNSAQ*SE*EDAESVYNNQASSRFHSFLDL******************************************************************************************************************************************************************************************************************************LKKLDSFNRWMSKELGDVKE**********************************MMSPSLSQDQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAIS*******************************DLPYGLSMKDSLAAVRNATQAAARIHQVFRVQSFQKKQLKEYGNDTFGISDERALSLVAVKTQKPGHHDEPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGL********************EDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQETKA*************DDLVDI***LDDTL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADSRRFALGNQLDIEQILIEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWMLEEELSHIVLVHYREVKGNRTNFNRAKVAEGATPYSQENEETIPNSEVEGSQSSGFHPNSYQMPSQTADTSLNSAQASEYEDAESVYNNQASSRFHSFLDLQQPVAEKIDAGLADPYYPSSLTNNYQGKFSVVPGADFISPAQTDKSRNSNDTGLTYEPQKNLDFPSWEDVLQNCSQGVGSQPEALGDIPNQGYDILGEPFTNSFGERKEFGSHLQTRGEWQASRNDSSHLSNWPMDQKVYLDSAHDLTSQSCEQGAAHDGLLDSLRPPHAHPNMENDVHEQLPNAEHGHLLKSDPESSLTIDGKSFYSSAIKQHLIDGSTEGLKKLDSFNRWMSKELGDVKESNMQSSSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGATAVQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNATQAAARIHQVFRVQSFQKKQLKEYGNDTFGISDERALSLVAVKTQKPGHHDEPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETLTASSSMVATSAKEDDxxxxxxxxxxxxxxxxxxxxxVKSMVQYPEARDQYRRLLNVVNEIQETKAMALSNAEETADFDDDLVDIEALLDDTLMPNAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1092	2.2.26 [Sep-21-2011]
Q8GSA7	1032	Calmodulin-binding transc	yes	no	0.912	0.965	0.534	0.0
Q6NPP4	1050	Calmodulin-binding transc	no	no	0.925	0.962	0.481	0.0
Q9FY74	1007	Calmodulin-binding transc	no	no	0.588	0.638	0.514	0.0
Q9FYG2	1016	Calmodulin-binding transc	no	no	0.515	0.554	0.386	1e-100
Q9LSP8	838	Calmodulin-binding transc	no	no	0.543	0.708	0.334	3e-83
O23463	923	Calmodulin-binding transc	no	no	0.523	0.619	0.331	1e-79
Q9Y6Y1	1673	Calmodulin-binding transc	yes	no	0.104	0.068	0.420	2e-16
A2A891	1682	Calmodulin-binding transc	yes	no	0.104	0.067	0.420	2e-16
O94983	1202	Calmodulin-binding transc	no	no	0.103	0.094	0.385	1e-14
Q80Y50	1208	Calmodulin-binding transc	no	no	0.103	0.093	0.370	1e-12

>sp|Q8GSA7|CMTA3_ARATH Calmodulin-binding transcription activator 3 OS=Arabidopsis thaliana GN=CMTA3 PE=1 SV=1

 Score = 1056 bits (2730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/1114 (53%), Positives = 750/1114 (67%), Gaps = 118/1114 (10%)

Query: 1    MADSRRFALGNQLDIEQILIEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLF 60
            MA++RRF+  ++LD+ QIL EA+HRWLRP EICEIL+NY +F+I+ E P TP SGS+F+F
Sbjct: 1    MAEARRFSPVHELDVGQILSEARHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMF 60

Query: 61   DRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWML 120
            DRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHG++NENFQRRSYW+L
Sbjct: 61   DRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGQDNENFQRRSYWLL 120

Query: 121  EEELSHIVLVHYREVKGNR--TNFNRAKVAEGATPYSQENEETIPNSEVEGSQSSGFHPN 178
            +EELSHIV VHY EVKG+R  T+FNR +  E A    QE  + +  SE +G  S  F+ N
Sbjct: 121  QEELSHIVFVHYLEVKGSRVSTSFNRMQRTEDAARSPQETGDAL-TSEHDGYASCSFNQN 179

Query: 179  SYQMPSQTADT-SLNSAQASEYEDAESVYNNQASSRFHSFLDLQQPVAEKIDAGLADPYY 237
             +   SQT D+ S+N   + E EDAES YN   SS  +S  +LQQP       G  DPYY
Sbjct: 180  DHSNHSQTTDSASVNGFHSPELEDAESAYNQHGSSTAYSHQELQQPATGGNLTGF-DPYY 238

Query: 238  PSSLT--NNYQGKFSVVPGADFISPAQTDKSRNSNDTGLT--YEPQKNLDFPSWEDVLQN 293
              SLT  ++YQ +   +P  D  S    DKS+  N  G+T   + +K++D  +WE++L N
Sbjct: 239  QISLTPRDSYQKELRTIPVTD--SSIMVDKSKTINSPGVTNGLKNRKSIDSQTWEEILGN 296

Query: 294  CSQGVGSQPEALGDIPNQGYDILGEPFTNSFGERKEFGSHLQTRGEWQASRNDSSHLSN- 352
            C  GV    EAL   PN  +++L +   +SF   ++F S  ++  + Q    +S   S+ 
Sbjct: 297  CGSGV----EALPLQPNSEHEVLDQILESSF-TMQDFASLQESMVKSQNQELNSGLTSDR 351

Query: 353  --WPMDQKVYLDSAHDLTSQSCEQGAAHDGLLDSLRPPHAHPNMENDVHEQLPNAEHGHL 410
              W   Q + L++  +L S                             +E+ P       
Sbjct: 352  TVWFQGQDMELNAISNLAS-----------------------------NEKAP------- 375

Query: 411  LKSDPESSLTIDGKSFYSSAIKQHLIDGST--EGLKKLDSFNRWMSKELGDV------KE 462
                            Y S +KQHL+ G+   EGLKK+DSFNRWMSKELGDV       E
Sbjct: 376  ----------------YLSTMKQHLLHGALGEEGLKKMDSFNRWMSKELGDVGVIADANE 419

Query: 463  SNMQSSSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAYVSS 522
            S  QSSS  YWE VESE+G   +G + +  +D Y+MSPSLS++QL+SI DFSP+WAYV  
Sbjct: 420  SFTQSSSRTYWEEVESEDG--SNGHNSRRDMDGYVMSPSLSKEQLFSINDFSPSWAYVGC 477

Query: 523  EVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCS 582
            EV V +TG+FL +++E E  +WSCMFG+ EVPA++++ G+L+C     + GRVPFYVTCS
Sbjct: 478  EVVVFVTGKFLKTREETEIGEWSCMFGQTEVPADVISNGILQCVAPMHEAGRVPFYVTCS 537

Query: 583  NRLSCSEVREFEYRA--SHIPDVDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNL 640
            NRL+CSEVREFEY+   S + D +  D     T + L  +F KLLC  S +T      N 
Sbjct: 538  NRLACSEVREFEYKVAESQVFDREADDES---TIDILEARFVKLLCSKSENTSPVS-GND 593

Query: 641  SDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAA 700
            SD+SQL+ KIS LL + +D  D ML      + S E +K  L+Q+ LKE L  WL+QK A
Sbjct: 594  SDLSQLSEKISLLLFENDDQLDQMLM----NEISQENMKNNLLQEFLKESLHSWLLQKIA 649

Query: 701  EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 760
            EGGKGP VLD  GQGVLHFAA+LGY+WALEPT +AGV+++FRDVNGWTALHWAA+ GRER
Sbjct: 650  EGGKGPSVLDEGGQGVLHFAASLGYNWALEPTIIAGVSVDFRDVNGWTALHWAAFFGRER 709

Query: 761  TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNK 820
             + SLIALGAAPG L+DP P +PSG TP+DLA + GHKGIAGYL+E  L + +S +SLN 
Sbjct: 710  IIGSLIALGAAPGTLTDPNPDFPSGSTPSDLAYANGHKGIAGYLSEYALRAHVSLLSLND 769

Query: 821  KDGDVAEVTGATAVQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNATQAAARIHQVFRVQ 880
            K+ +  E+  + +  +                   + DSL AVRNATQAAARIHQVFR Q
Sbjct: 770  KNAETVEMAPSPSSSS-------------------LTDSLTAVRNATQAAARIHQVFRAQ 810

Query: 881  SFQKKQLKEYGNDTFGISDERALSLVAVKTQKPG--HHDEPVHAAATRIQNKFRSWKGRK 938
            SFQKKQLKE+G+   G+S+ERALS++A KT K G  H D+ V AAA RIQNKFR +KGRK
Sbjct: 811  SFQKKQLKEFGDKKLGMSEERALSMLAPKTHKSGRAHSDDSVQAAAIRIQNKFRGYKGRK 870

Query: 939  DFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETLTAS 998
            D+LI R++IIKIQA+VRG+Q RKNY+KIIWSVG++EK+ILRWRR+G+GLRGFKSE L   
Sbjct: 871  DYLITRQRIIKIQAHVRGYQFRKNYRKIIWSVGVLEKVILRWRRKGAGLRGFKSEALV-- 928

Query: 999  SSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQET 1058
              M   + KE+D DF K+GRKQ E+RLQKALARVKSMVQYPEARDQYRRLLNVVN+IQE+
Sbjct: 929  EKMQDGTEKEEDDDFFKQGRKQTEDRLQKALARVKSMVQYPEARDQYRRLLNVVNDIQES 988

Query: 1059 KA-MALSNAEETA-DFDDDLVDIEALL--DDTLM 1088
            K   AL N+E T  D DDDL+DIEALL  DDTLM
Sbjct: 989  KVEKALENSEATCFDDDDDLIDIEALLEDDDTLM 1022

Regulates transcriptional activity in response to calcium signals. Binds to the consensus sequence 5'-[ACG]CGCG[GTC]-3'.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPP4|CMTA2_ARATH Calmodulin-binding transcription activator 2 OS=Arabidopsis thaliana GN=CMTA2 PE=1 SV=1

 Score =  945 bits (2443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/1093 (48%), Positives = 692/1093 (63%), Gaps = 82/1093 (7%)

Query: 1    MADSRRFALGNQLDIEQILIEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLF 60
            MAD   F    +LDI+Q+L EAQHRWLRPAEICEILRN+ KF IA E P+ PPSGSLFLF
Sbjct: 1    MADRGSFGFAPRLDIKQLLSEAQHRWLRPAEICEILRNHQKFHIASEPPNRPPSGSLFLF 60

Query: 61   DRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWML 120
            DRKVLRYFRKDGHNWRKKKDGKTVKEAHE+LK GS+DVLHCYYAHGE+NENFQRR YWML
Sbjct: 61   DRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEDNENFQRRCYWML 120

Query: 121  EEELSHIVLVHYREVKGNRTNFNRAKVAEGATPYSQENEETIPNSEVEGSQSSGFHPNSY 180
            E++L HIV VHY EVKGNR           +T  ++EN     ++ + G+        S 
Sbjct: 121  EQDLMHIVFVHYLEVKGNRM----------STSGTKENH----SNSLSGT-------GSV 159

Query: 181  QMPSQTADTSLNSAQASEYEDAESVYNNQASSRFHSFLDLQQPVAEKIDAGLADPYYPSS 240
             + S    +S+ S      EDA+S  + QASS      + Q  V + +       ++ ++
Sbjct: 160  NVDSTATRSSILSPLC---EDADSGDSRQASSSLQQNPEPQTVVPQIM-------HHQNA 209

Query: 241  LTNNYQGKFSVVPGADFISPAQTDKSRNSNDTGLTYEPQKNLDFPSWEDVLQNC------ 294
             T N     SV+   D  + A  ++ + SN        Q++ D P+W+   +N       
Sbjct: 210  STINSYNTTSVLGNRDGWTSAHGNRVKGSNS-------QRSGDVPAWDASFENSLARYQN 262

Query: 295  ----SQGVGSQPEALGDIPNQGYDILGEPFTNSFGERKEFGSHLQTRGEWQASRNDSSHL 350
                +    +QP   G IP +G    G   T+     +   + LQ++  WQ    +S  L
Sbjct: 263  LPYNAPLTQTQPSTFGLIPMEGKTEKGSLLTS-----EHLRNPLQSQVNWQTPVQESVPL 317

Query: 351  SNWPMDQKVYLDSAHDLTSQSCEQGAAHD-GLLDSLRPPHAHPNMENDVHEQLPNAEHGH 409
              WPMD    +  A DL      QGA  + G   SL       +          N E  +
Sbjct: 318  QKWPMDSHSGMTDATDLALFG--QGAHENFGTFSSLLGSQDQQSSSFQA--PFTNNEAAY 373

Query: 410  LLKSDPESSLTIDGKSFYSSAIKQHLIDGSTEGLKKLDSFNRWMSKELGDVKESNMQSSS 469
            + K  PE  L  +  +  +  +++ L+    + LKK+DSF+RW+SKELG++++  MQSSS
Sbjct: 374  IPKLGPE-DLIYEASANQTLPLRKALLK-KEDSLKKVDSFSRWVSKELGEMEDLQMQSSS 431

Query: 470  GAY-WETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAYVSSEVKVLI 528
            G   W +VE EN    S            +SPSLS+DQ +++IDF P W    SEV+V++
Sbjct: 432  GGIAWTSVECENAAAGSS-----------LSPSLSEDQRFTMIDFWPKWTQTDSEVEVMV 480

Query: 529  TGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCS 588
             G FL+S QE  +  WSCMFGE+EVPA+I+  GVL CH    +VGRVPFY+TCS+R SCS
Sbjct: 481  IGTFLLSPQEVTSYSWSCMFGEVEVPADILVDGVLCCHAPPHEVGRVPFYITCSDRFSCS 540

Query: 589  EVREFEYRASHIPDVDVADNCGDITSE-NLRMQFGKLLCLTSVSTPNYDPSNLSDISQLN 647
            EVREF++       ++  D  G  T E +L ++F  LL L      ++   N+ +  +  
Sbjct: 541  EVREFDFLPGSTRKLNATDIYGANTIETSLHLRFENLLALRCSVQEHHIFENVGEKRRKI 600

Query: 648  SKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPC 707
            SKI  LLKDE +     L  T E+  +  E KE+L+++  ++KL +WL+ K  E GKGP 
Sbjct: 601  SKI-MLLKDEKEP---PLPGTIEKDLTELEAKERLIREEFEDKLYLWLIHKVTEEGKGPN 656

Query: 708  VLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIA 767
            +LD  GQGVLH AAALGYDWA++P   AGV+INFRD NGW+ALHWAA+ GRE TVA L++
Sbjct: 657  ILDEDGQGVLHLAAALGYDWAIKPILAAGVSINFRDANGWSALHWAAFSGREDTVAVLVS 716

Query: 768  LGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAE 827
            LGA  GAL+DP+P++P G+T ADLA   GH+GI+G+LAES L+S L  ++++ K+   A+
Sbjct: 717  LGADAGALADPSPEHPLGKTAADLAYGNGHRGISGFLAESSLTSYLEKLTVDAKENSSAD 776

Query: 828  VTGATAVQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNATQAAARIHQVFRVQSFQKKQL 887
             +GA AV TV +R  TP+S GD+P  LSMKDSL AV NATQAA R+HQVFR+QSFQ+KQL
Sbjct: 777  SSGAKAVLTVAERTATPMSYGDVPETLSMKDSLTAVLNATQAADRLHQVFRMQSFQRKQL 836

Query: 888  KEYGNDT-FGISDERALSLVAVKTQKPGHHDEPVHAAATRIQNKFRSWKGRKDFLIIRKQ 946
             E G D  F ISDE A+S  A KT+K GH    VHAAA +IQ K+R WK RK+FL+IR++
Sbjct: 837  SELGGDNKFDISDELAVSFAAAKTKKSGHSSGAVHAAAVQIQKKYRGWKKRKEFLLIRQR 896

Query: 947  IIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETLTASSSMVATSA 1006
            I+KIQA+VRGHQVRK Y+ IIWSVG++EKIILRWRR+GSGLRGFK +T++  +  V  + 
Sbjct: 897  IVKIQAHVRGHQVRKQYRAIIWSVGLLEKIILRWRRKGSGLRGFKRDTISKPTEPVCPAP 956

Query: 1007 KEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQETKAMALS-- 1064
            +EDDYDFLKEGRKQ EERLQKAL RVKSM QYPEAR QYRRLL VV   +E +A + S  
Sbjct: 957  QEDDYDFLKEGRKQTEERLQKALTRVKSMAQYPEARAQYRRLLTVVEGFRENEASSSSAL 1016

Query: 1065 --NAEETADFDDD 1075
              N EE A+++++
Sbjct: 1017 KNNTEEAANYNEE 1029

Regulates transcriptional activity in response to calcium signals. Binds to the consensus sequence 5'-[ACG]CGCG[GTC]-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY74|CMTA1_ARATH Calmodulin-binding transcription activator 1 OS=Arabidopsis thaliana GN=CMTA1 PE=2 SV=2

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/674 (51%), Positives = 466/674 (69%), Gaps = 31/674 (4%)

Query: 435  LIDGSTEGLKKLDSFNRWMSKELGDVKESNMQSSSG-AYWETVESENGVDDSGVSPQARL 493
            ++  S + LKK+DSF++W  KELG++++  MQSS G   W TVE E     +G+S     
Sbjct: 348  ILRRSEDSLKKVDSFSKWAIKELGEMEDLQMQSSRGDIAWTTVECETAA--AGIS----- 400

Query: 494  DTYMMSPSLSQDQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEV 553
                +SPSLS+DQ ++I+DF P  A   +EV+V++ G FL+S QE     WSCMFGE+EV
Sbjct: 401  ----LSPSLSEDQRFTIVDFWPKSAKTDAEVEVMVIGTFLLSPQEVTKYNWSCMFGEVEV 456

Query: 554  PAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDIT 613
            PAEI+  GVL CH      G VPFYVTCSNR +CSEVREF++ +     ++  D  G  T
Sbjct: 457  PAEILVDGVLCCHAPPHTAGHVPFYVTCSNRFACSEVREFDFLSGSTQKINATDVYGTYT 516

Query: 614  SE-NLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEK 672
            +E +L+++F K+L        ++   ++ D  +  SKI  LLK+E +    +L  T +  
Sbjct: 517  NEASLQLRFEKMLAHRDFVHEHHIFEDVGDKRRQISKIM-LLKEEKE---YLLPGTYQRD 572

Query: 673  FSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPT 732
             + +E K +L ++L +E+L +WL+ K  E GKGP +LD  GQG+LHF AALGYDWA++P 
Sbjct: 573  STKQEPKGQLFRELFEEELYIWLIHKVTEEGKGPNILDEDGQGILHFVAALGYDWAIKPV 632

Query: 733  TVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLA 792
              AGVNINFRD NGW+ALHWAA+ GRE TVA L++LGA  GAL+DP+P+ P G+T ADLA
Sbjct: 633  LAAGVNINFRDANGWSALHWAAFSGREETVAVLVSLGADAGALTDPSPELPLGKTAADLA 692

Query: 793  SSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGATAVQTVPQRCPTPVSDGDLPY 852
             + GH+GI+G+LAES L+S L  ++++ K+   A   G  AVQTV +R   P++ GD+P 
Sbjct: 693  YANGHRGISGFLAESSLTSYLEKLTVDSKENSPANSCGEKAVQTVSERTAAPMTYGDVPE 752

Query: 853  GLSMKDSLAAVRNATQAAARIHQVFRVQSFQKKQLKEYGND-TFGISDERALSLVAVKTQ 911
             LS+KDSL AVRNATQAA R+HQVFR+QSFQ+KQL + G+D    ISD+ A+S  A KT+
Sbjct: 753  KLSLKDSLTAVRNATQAADRLHQVFRMQSFQRKQLCDIGDDEKIDISDQLAVSFAASKTK 812

Query: 912  KPGHHDEPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVG 971
             PG  D  +  AAT IQ K+R WK RK+FL+IR++I+KIQA+VRGHQVRK Y+ +IWSVG
Sbjct: 813  NPGQGDVSLSCAATHIQKKYRGWKKRKEFLLIRQRIVKIQAHVRGHQVRKQYRTVIWSVG 872

Query: 972  IMEKIILRWRRRGSGLRGFKSETLTAS-------SSMVATSAKEDDYDFLKEGRKQKEER 1024
            ++EKIILRWRR+G+GLRGFK   +  +       S++     +ED+YD+LKEGRKQ EER
Sbjct: 873  LLEKIILRWRRKGNGLRGFKRNAVAKTVEPEPPVSAICPRIPQEDEYDYLKEGRKQTEER 932

Query: 1025 LQKALARVKSMVQYPEARDQYRRLLNVVNEIQETKA---MALSNAEETADF--DDDLVDI 1079
            LQKAL RVKSMVQYPEARDQYRRLL VV   +E +A    +++N EE A    +DD +DI
Sbjct: 933  LQKALTRVKSMVQYPEARDQYRRLLTVVEGFRENEASSSASINNKEEEAVNCEEDDFIDI 992

Query: 1080 EALL-DDTLMPNAS 1092
            E+LL DDTLM + S
Sbjct: 993  ESLLNDDTLMMSIS 1006

Regulates transcriptional activity in response to calcium signals. Binds to the consensus sequence 5'-[ACG]CGCG[GTC]-3'. Activates the expression of the V-PPase proton pump in pollen.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYG2|CMTA4_ARATH Calmodulin-binding transcription activator 4 OS=Arabidopsis thaliana GN=CMTA4 PE=1 SV=1

 Score =  367 bits (941), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 234/606 (38%), Positives = 349/606 (57%), Gaps = 43/606 (7%)

Query: 498  MSPSLSQDQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEI 557
            M  + + +Q ++I D SP+W Y +   KV+I G FL    E+    WSCMFG  +VP EI
Sbjct: 436  MRVTGAHNQKFTIQDISPDWGYANETTKVIIIGSFLCDPTES---TWSCMFGNAQVPFEI 492

Query: 558  VAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENL 617
            +  GV+RC       G+V   +T  + L CSE+REFEYR    PD      C +  + ++
Sbjct: 493  IKEGVIRCEAPQCGPGKVNLCITSGDGLLCSEIREFEYREK--PDT-CCPKCSEPQTSDM 549

Query: 618  RMQFGKLLCLTS-VSTPNYDPSN--LSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFS 674
                 +L+ L   V T   D S+   S++   N K+ + LK ++D W  ++    +   S
Sbjct: 550  STSPNELILLVRFVQTLLSDRSSERKSNLESGNDKLLTKLKADDDQWRHVIGTIIDGSAS 609

Query: 675  SEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTV 734
            S    + L+Q+LLK+KL  WL  ++ +     C L    QG++H  A LG++WA  P   
Sbjct: 610  STSTVDWLLQELLKDKLDTWLSSRSCDEDYITCSLSKQEQGIIHMVAGLGFEWAFYPILA 669

Query: 735  AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASS 794
             GVN++FRD+ GW+ALHWAA  G E+ VA+LIA GA+ GA++DP+ + P+G+T A +A+S
Sbjct: 670  HGVNVDFRDIKGWSALHWAAQFGSEKMVAALIASGASAGAVTDPSRQDPNGKTAASIAAS 729

Query: 795  IGHKGIAGYLAESDLSSALSAISLNKKDG--DVAEVTGATAVQTVPQRCPTPVSDGDLPY 852
             GHKG+AGYL+E  L++ LS+++L + +   D A+V     + ++ ++ P+   D     
Sbjct: 730  NGHKGLAGYLSEVALTNHLSSLTLEETENSKDTAQVQTEKTLNSISEQSPSGNED----- 784

Query: 853  GLSMKDSLAAVRNATQAAARIHQVFRVQSFQKKQ---------LKEYGNDTFGISDERAL 903
             +S+KD+LAAVRNA QAAARI   FR  SF+K++         L+EYG       D   +
Sbjct: 785  QVSLKDTLAAVRNAAQAAARIQAAFRAHSFRKRKQREAALVACLQEYG---MYCEDIEGI 841

Query: 904  SLVAVKTQKPGHHDEPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNY 963
            S ++  T   G +    ++AA  IQ  FR +K RK FL +R++++KIQA+VRG+Q+RKNY
Sbjct: 842  SAMSKLTFGKGRN---YNSAALSIQKNFRGYKDRKCFLELRQKVVKIQAHVRGYQIRKNY 898

Query: 964  KKIIWSVGIMEKIILRWRRRGSGLRGFKSETLTASSSMVATSAKEDDYDFLKEGRKQK-E 1022
            K I W+V I++K++LRWRR+G GLRGF+ +        V ++   +D D LK  RKQK +
Sbjct: 899  KVICWAVRILDKVVLRWRRKGVGLRGFRQD--------VESTEDSEDEDILKVFRKQKVD 950

Query: 1023 ERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQETKAMALSNAEETADFDDDLVDIEAL 1082
              + +A +RV SM   PEAR QY R   V+    +TKA          + DD L DI  +
Sbjct: 951  VAVNEAFSRVLSMSNSPEARQQYHR---VLKRYCQTKAELGKTETLVGEDDDGLFDIADM 1007

Query: 1083 LDDTLM 1088
              DTL 
Sbjct: 1008 EYDTLF 1013

Regulates transcriptional activity in response to calcium signals. Binds to the consensus sequence 5'-[ACG]CGCG[GTC]-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSP8|CMTA6_ARATH Calmodulin-binding transcription activator 6 OS=Arabidopsis thaliana GN=CMTA6 PE=2 SV=1

 Score =  310 bits (795), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 221/661 (33%), Positives = 346/661 (52%), Gaps = 67/661 (10%)

Query: 416  ESSLTIDGKSFYSSAIK-------QH----LIDGSTEGL-----KKLDSFNRWMSKELGD 459
            +S+ T+D  S+++  ++       +H    + DGS + L     +  +SF RWM+     
Sbjct: 190  QSAPTVDNLSYFTEPLQNAANGTAEHGNATVADGSLDALLNDGPQSRESFGRWMN---SF 246

Query: 460  VKESNMQSSSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAY 519
            + ESN      ++   V          ++PQA   ++   P    +Q+++I D SP WAY
Sbjct: 247  ISESNGSLEDPSFEPMVMPRQ----DPLAPQAVFHSHSNIP----EQVFNITDVSPAWAY 298

Query: 520  VSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYV 579
             S + K+L+TG    S Q  E     C+ G+  VPAE +  GV RC       G V  Y+
Sbjct: 299  SSEKTKILVTGFLHDSYQHLERSNLYCVCGDFCVPAEYLQAGVYRCIIPPHSPGMVNLYL 358

Query: 580  TCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRMQ--FGKLLCLTS----VSTP 633
            +       S+   FE+RA  + D  V ++  D   E    Q     LL  +S    V + 
Sbjct: 359  SADGHKPISQCFRFEHRAVPVLDKTVPEDNQDSKWEEFEFQVRLSHLLFTSSNKLNVLSS 418

Query: 634  NYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQV 693
               P NL D  +L SK + LL    + W  ++K     K S ++ K+ L +  LK +L+ 
Sbjct: 419  KISPHNLRDAKKLASKTNHLL----NSWAYLVKSIQGNKVSFDQAKDHLFELSLKNRLKE 474

Query: 694  WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWA 753
            WL++K  EG +     D  G GV+H  A+LGY W+++  +++G+++NFRD  GWTALHWA
Sbjct: 475  WLMEKVLEG-RNTLDYDSKGLGVIHLCASLGYTWSVQLFSLSGLSLNFRDKQGWTALHWA 533

Query: 754  AYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSAL 813
            AY GRE+ VA+L++ GA P  ++D T     G   ADLA   G+ G+A YLAE  L +  
Sbjct: 534  AYYGREKMVAALLSAGARPNLVTDSTKDNLGGCMAADLAQQNGYDGLAAYLAEKCLVAQF 593

Query: 814  SAISLNKKDGDVAEVTGATAVQTVPQRCPTPVSDGDLPYG-LSMKDSLAAVRNATQAAAR 872
              +   K  G++     A   + + Q        G LP    S+KD+LAA R A +AAAR
Sbjct: 594  RDM---KIAGNITGDLEACKAEMLNQ--------GTLPEDEQSLKDALAAYRTAAEAAAR 642

Query: 873  IHQVFRVQSFQ--KKQLKEYGNDTFGISDERALSLV-AVKTQKPGHHDEPVHA--AATRI 927
            I   FR ++ +  +  + ++ N      +E A S++ A+K Q      +      AA RI
Sbjct: 643  IQGAFREKALKAARSSVIQFAN-----KEEEAKSIIAAMKIQNAFRKYDTRRKIEAAYRI 697

Query: 928  QNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGL 987
            Q +F++WK R+++L +R+Q I+IQA  RG Q R+ YKKI+WSVG++EK +LRWR++  G 
Sbjct: 698  QCRFQTWKIRREYLNMRRQAIRIQAAFRGLQARRQYKKILWSVGVLEKAVLRWRQKRKGF 757

Query: 988  RGFKSETLTASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRR 1047
            RG +     A+       A+E   DF K  ++Q EERL++++ RV++M +  +A+  YRR
Sbjct: 758  RGLQ----VAAEEDSPGEAQE---DFYKTSQRQAEERLERSVVRVQAMFRSKKAQQDYRR 810

Query: 1048 L 1048
            +
Sbjct: 811  M 811

Regulates transcriptional activity in response to calcium signals. Binds to the consensus sequence 5'-[ACG]CGCG[GTC]-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|O23463|CMTA5_ARATH Calmodulin-binding transcription activator 5 OS=Arabidopsis thaliana GN=CMTA5 PE=2 SV=2

 Score =  299 bits (765), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 204/616 (33%), Positives = 313/616 (50%), Gaps = 44/616 (7%)

Query: 442  GLKKLDSFNRWMSKELGDVKESNMQSSSGAYWETVESENGVDDSGVSPQARLDTYMMSPS 501
            G    DSF RW++  + D   S    S  A +   +      DS   P     T   S S
Sbjct: 318  GYGSQDSFGRWVNNFISDSPGSVDDPSLEAVYTPGQ------DSSTPP-----TVFHSHS 366

Query: 502  LSQDQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGG 561
               +Q+++I D SP WAY + + K+L+TG F  S Q        C+ GE+ VPAE +  G
Sbjct: 367  DIPEQVFNITDVSPAWAYSTEKTKILVTGFFHDSFQHLGRSNLICICGELRVPAEFLQMG 426

Query: 562  VLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVA--DNCGDITSENLRM 619
            V RC    Q  G V  Y++       S++  FE+R+    +  +   D          ++
Sbjct: 427  VYRCFLPPQSPGVVNLYLSVDGNKPISQLFSFEHRSVQFIEKAIPQDDQLYKWEEFEFQV 486

Query: 620  QFGKLLCLTS----VSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSS 675
            +   LL  +S    V T    P NL +  +L S+ S LL    + W  ++K     +   
Sbjct: 487  RLAHLLFTSSNKISVLTSKISPENLLEAKKLASRTSHLL----NSWAYLMKSIQANEVPF 542

Query: 676  EEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVA 735
            ++ ++ L +  LK +L+ WL++K  E  +     D  G GV+H  A LGY W++   + A
Sbjct: 543  DQARDHLFELTLKNRLKEWLLEKVIEN-RNTKEYDSKGLGVIHLCAVLGYTWSILLFSWA 601

Query: 736  GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSI 795
             ++++FRD  GWTALHWAAY GRE+ VA+L++ GA P  ++DPT ++  G T ADLA   
Sbjct: 602  NISLDFRDKQGWTALHWAAYYGREKMVAALLSAGARPNLVTDPTKEFLGGCTAADLAQQK 661

Query: 796  GHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGATAVQTVPQRCPTPVSDGDLPYGLS 855
            G+ G+A +LAE  L +         KD   A            ++   P +  +     S
Sbjct: 662  GYDGLAAFLAEKCLVAQF-------KDMQTAGNISGNLETIKAEKSSNPGNANEEEQ--S 712

Query: 856  MKDSLAAVRNATQAAARIHQVFRVQSFQKKQLKEYGNDTFGISDERALSLVAVKTQKPGH 915
            +KD+LAA R A +AAARI   FR    + +         F   +E A +++A    +   
Sbjct: 713  LKDTLAAYRTAAEAAARIQGAFREHELKVRS----SAVRFASKEEEAKNIIAAMKIQHAF 768

Query: 916  HDEPVH---AAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGI 972
             +  V    AAA RIQ +F++WK R++FL +RK+ I+IQA  RG QVR+ Y+KI WSVG+
Sbjct: 769  RNFEVRRKIAAAARIQYRFQTWKMRREFLNMRKKAIRIQAAFRGFQVRRQYQKITWSVGV 828

Query: 973  MEKIILRWRRRGSGLRGFKSETLTASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARV 1032
            +EK ILRWR +  G RG +   ++       + A E   DF K  +KQ EERL++++ +V
Sbjct: 829  LEKAILRWRLKRKGFRGLQ---VSQPDEKEGSEAVE---DFYKTSQKQAEERLERSVVKV 882

Query: 1033 KSMVQYPEARDQYRRL 1048
            ++M +  +A+  YRR+
Sbjct: 883  QAMFRSKKAQQDYRRM 898

Regulates transcriptional activity in response to calcium signals. Binds to the consensus sequence 5'-[ACG]CGCG[GTC]-3'. Activates the expression of the V-PPase proton pump in pollen.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9Y6Y1|CMTA1_HUMAN Calmodulin-binding transcription activator 1 OS=Homo sapiens GN=CAMTA1 PE=1 SV=4

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 68/119 (57%), Gaps = 5/119 (4%)

Query: 19  LIEAQHRWLRPAEICEILRNYTKFR-IAPESPHT-PPSGSLFLFDRKVLRYFRKDGHNWR 76
           L + +HRW    EI   L  + K       SP T P +GS+ L++RK ++Y RKDG+ W+
Sbjct: 67  LPKERHRWNTNEEIAAYLITFEKHEEWLTTSPKTRPQNGSMILYNRKKVKY-RKDGYCWK 125

Query: 77  KKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWMLEEELSHIVLVHYREV 135
           K+KDGKT +E H +LK   V+ L+  Y H      F RR YW+L+     IVLVHY  V
Sbjct: 126 KRKDGKTTREDHMKLKVQGVECLYGCYVHSSIIPTFHRRCYWLLQN--PDIVLVHYLNV 182

Transcriptional activator. May act as a tumor suppressor.

Homo sapiens (taxid: 9606)

>sp|A2A891|CMTA1_MOUSE Calmodulin-binding transcription activator 1 OS=Mus musculus GN=Camta1 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 68/119 (57%), Gaps = 5/119 (4%)

Query: 19  LIEAQHRWLRPAEICEILRNYTKFR-IAPESPHT-PPSGSLFLFDRKVLRYFRKDGHNWR 76
           L + +HRW    EI   L  + K       SP T P +GS+ L++RK ++Y RKDG+ W+
Sbjct: 67  LPKERHRWNTNEEIAAYLITFEKHEEWLTTSPKTRPQNGSMILYNRKKVKY-RKDGYCWK 125

Query: 77  KKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWMLEEELSHIVLVHYREV 135
           K+KDGKT +E H +LK   V+ L+  Y H      F RR YW+L+     IVLVHY  V
Sbjct: 126 KRKDGKTTREDHMKLKVQGVECLYGCYVHSSIIPTFHRRCYWLLQN--PDIVLVHYLNV 182

Transcriptional activator.

Mus musculus (taxid: 10090)

>sp|O94983|CMTA2_HUMAN Calmodulin-binding transcription activator 2 OS=Homo sapiens GN=CAMTA2 PE=1 SV=3

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 9/122 (7%)

Query: 18  ILIEAQHRWLRPAEICEILRNYTK----FRIAPESPHTPPSGSLFLFDRKVLRYFRKDGH 73
           +L   + RW    EI   L  + K       AP++   P +GS+ L++RK ++Y RKDG+
Sbjct: 33  LLPPERLRWNTNEEIASYLITFEKHDEWLSCAPKT--RPQNGSIILYNRKKVKY-RKDGY 89

Query: 74  NWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWMLEEELSHIVLVHYR 133
            W+K+KDGKT +E H +LK   ++ L+  Y H      F RR YW+L+     IVLVHY 
Sbjct: 90  LWKKRKDGKTTREDHMKLKVQGMECLYGCYVHSSIVPTFHRRCYWLLQN--PDIVLVHYL 147

Query: 134 EV 135
            V
Sbjct: 148 NV 149

Transcription activator. May act as tumor suppressor.

Homo sapiens (taxid: 9606)

>sp|Q80Y50|CMTA2_MOUSE Calmodulin-binding transcription activator 2 OS=Mus musculus GN=Camta2 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 68/127 (53%), Gaps = 14/127 (11%)

Query: 18  ILIEAQHRWLRPAEICEILRNYTK----FRIAPESPHTPPSGSLFLFDRKVLRYFRKDGH 73
           +L   + RW    EI   L  + K       AP++   P +GS+ L++RK ++Y RKDG+
Sbjct: 33  LLPPERLRWNTNEEIASYLITFEKHDEWLSCAPKT--RPQNGSIILYNRKKVKY-RKDGY 89

Query: 74  NWRKKKDGKTVKEAHERLKAGSVD-----VLHCYYAHGEENENFQRRSYWMLEEELSHIV 128
            W+K+KDGKT +E H +LK   ++      L+  Y H      F RR YW+L+     IV
Sbjct: 90  LWKKRKDGKTTREDHMKLKVQGMEPVSWQCLYGCYVHSSIVPTFHRRCYWLLQN--PDIV 147

Query: 129 LVHYREV 135
           LVHY  V
Sbjct: 148 LVHYLNV 154

Transcription activator. May act as tumor suppressor.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1092
297742873	1243	unnamed protein product [Vitis vinifera]	0.913	0.802	0.685	0.0
224096175	1007	predicted protein [Populus trichocarpa]	0.898	0.974	0.649	0.0
356511089	1107	PREDICTED: calmodulin-binding transcript	0.990	0.977	0.605	0.0
301030829	1097	calmodulin-binding protein [Solanum lyco	0.969	0.965	0.623	0.0
356528461	1115	PREDICTED: calmodulin-binding transcript	0.987	0.966	0.593	0.0
297821451	1031	hypothetical protein ARALYDRAFT_481093 [	0.914	0.968	0.536	0.0
30681670	1032	calmodulin-binding transcription activat	0.912	0.965	0.534	0.0
110741068	1032	Calmodulin-binding transcription activat	0.912	0.965	0.533	0.0
359494747	1702	PREDICTED: calmodulin-binding transcript	0.680	0.436	0.693	0.0
255580898	845	calmodulin-binding transcription activat	0.759	0.981	0.563	0.0

>gi|297742873|emb|CBI35638.3| unnamed protein product [Vitis vinifera]

 Score = 1382 bits (3576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 727/1061 (68%), Positives = 834/1061 (78%), Gaps = 64/1061 (6%)

Query: 54   SGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQ 113
            SGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGS+DVLHCYYAHGE+NENFQ
Sbjct: 225  SGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEDNENFQ 284

Query: 114  RRSYWMLEEELSHIVLVHYREVKGNRTNFNRAKVAEGATPYSQENEETIPNSEVEGSQSS 173
            RRSYWMLEEELSHIVLVHYREVKGNRT+FNR K  EGA   SQE EE +PNSE + S SS
Sbjct: 285  RRSYWMLEEELSHIVLVHYREVKGNRTSFNRIKETEGALINSQETEEVVPNSETDCSVSS 344

Query: 174  GFHPNSYQMPSQTADT-SLNSAQASEYEDAESVYNNQASSRFHSFLDLQQPVAEKIDAGL 232
             F  NSYQM SQT DT SLNSAQASEYEDAES YN+QASSR HSFL   +PV EK DA L
Sbjct: 345  SFPMNSYQMASQTTDTTSLNSAQASEYEDAESAYNHQASSRLHSFL---EPVMEKGDA-L 400

Query: 233  ADPYYPSSLTNNYQGKFSVVPGADFISPAQTDKSRNSNDTGLTYEPQKNLDFPSWEDVLQ 292
              PYYP+  +N+YQGK  + PGADF S AQ   S++SN  G++YE  KNLDFPSWEDVL+
Sbjct: 401  TAPYYPAPFSNDYQGKLDI-PGADFTSLAQESSSKDSNSVGISYELPKNLDFPSWEDVLE 459

Query: 293  NCSQGVGSQP----------EALGDIPNQGYDILGEPFTNSFGERKEFGSHLQTRGEWQA 342
            NC+ GV S P          + +G IP Q  +IL +  T+SF  ++EFGS  Q + EWQ 
Sbjct: 460  NCNAGVQSMPSQTPFSSTRADTMGIIPKQENEILMQLLTDSFSRKQEFGSDPQGQDEWQT 519

Query: 343  SRNDSSHLSNWPMDQKVYLDSAHDLTSQSCEQGAAHDGLLDSLRPPHAHPNMENDVHEQL 402
            S   S+HLS WP DQK++ DSA+ L+++   Q A    LL+SL P HA+P+ +       
Sbjct: 520  SEGYSAHLSKWPGDQKLHSDSAYGLSTRFDIQEANCVDLLNSLEPGHAYPDGQ------- 572

Query: 403  PNAEHGHLLKSDPESSLTIDGKSFYSSAIKQHLIDGST--EGLKKLDSFNRWMSKELGDV 460
                                 K+ YSSA+KQ L+D S   EGLKK+DSFNRWMSKELGDV
Sbjct: 573  ---------------------KANYSSALKQPLLDSSLTEEGLKKVDSFNRWMSKELGDV 611

Query: 461  KESNMQS---SSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNW 517
             ES+MQS   SS AYW+TVESENGVD+S +SPQ  LDTYM+ PSLSQDQL+SIIDFSPNW
Sbjct: 612  NESHMQSRLSSSAAYWDTVESENGVDESSISPQGHLDTYMLGPSLSQDQLFSIIDFSPNW 671

Query: 518  AYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPF 577
            AY  SEVKVLI G+FL  QQ+AE CKWSCMFGE+EVPAE+++ GVLRCHT   K  RVPF
Sbjct: 672  AYAGSEVKVLIMGKFLKGQQDAEKCKWSCMFGEVEVPAEVISDGVLRCHTPIHKAERVPF 731

Query: 578  YVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENL-RMQFGKLLCLTSVSTPNYD 636
            YVTCSNRL+CSEVREFEYR +HI DVD AD     TSE L  M+F KLL L   S  N  
Sbjct: 732  YVTCSNRLACSEVREFEYRVNHIRDVDTADVSSGSTSEILLHMRFVKLLSLAPSS--NSG 789

Query: 637  PSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLV 696
             SN  D   LNSKI+SL++++ND+W+ ML LT+EE FS E+ KE+L+QKLLKEKL VWL+
Sbjct: 790  LSNEGDRFPLNSKINSLMEEDNDEWEQMLMLTSEE-FSPEKAKEQLLQKLLKEKLHVWLL 848

Query: 697  QKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYC 756
            QKAAEGGKGP VLD  GQGVLHFAAALGYDWA+ PTT AGV++NFRDVNGWTALHWAA+C
Sbjct: 849  QKAAEGGKGPNVLDEDGQGVLHFAAALGYDWAIPPTTAAGVSVNFRDVNGWTALHWAAFC 908

Query: 757  GRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAI 816
            GRERTV  LI+ GAAPGAL+DPTPKYP+GRTPADLASS GHKGIAGYLAES LS+ L ++
Sbjct: 909  GRERTVPFLISQGAAPGALTDPTPKYPAGRTPADLASSNGHKGIAGYLAESALSAHLQSL 968

Query: 817  SLNK-KDGDVAEVTGATAVQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNATQAAARIHQ 875
             L + K+ D AE++G  AVQT+ +R PTP+S GDLP    +KDSLAAV NATQAAARIHQ
Sbjct: 969  HLKETKEADAAEISGIKAVQTISERSPTPISTGDLP----LKDSLAAVCNATQAAARIHQ 1024

Query: 876  VFRVQSFQKKQLKEYGNDTFGISDERALSLVAVKTQKPGHHDEPVHAAATRIQNKFRSWK 935
            VFRVQSFQKKQ KEY +  FG+SDE ALSL+AVK+ + G HDEPVHAAATRIQNKFRSWK
Sbjct: 1025 VFRVQSFQKKQQKEYDDGKFGMSDEHALSLIAVKS-RLGQHDEPVHAAATRIQNKFRSWK 1083

Query: 936  GRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETL 995
            GRKDFLIIR++I+KIQA+VRGHQVRKNY+KIIWSVGI+EK+ILRWRR+GSGLRGFK ET 
Sbjct: 1084 GRKDFLIIRQRIVKIQAHVRGHQVRKNYRKIIWSVGILEKVILRWRRKGSGLRGFKPETH 1143

Query: 996  TASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRLLNVVNEI 1055
            T  +SM   S+KEDDYDFLKEGRKQ EERLQKALARVKSMVQYPEARDQYRRLLNVV EI
Sbjct: 1144 TEGTSMRDISSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVTEI 1203

Query: 1056 QETKAM---ALSNAEETADFDDDLVDIEALL-DDTLMPNAS 1092
            QETK +   AL+++EE ADF DDL+D++ALL DDT MP AS
Sbjct: 1204 QETKVVYDRALNSSEEAADF-DDLIDLQALLDDDTFMPTAS 1243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096175|ref|XP_002310562.1| predicted protein [Populus trichocarpa] gi|222853465|gb|EEE91012.1| predicted protein [Populus trichocarpa]

 Score = 1349 bits (3492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 688/1060 (64%), Positives = 812/1060 (76%), Gaps = 79/1060 (7%)

Query: 14   DIEQILIEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLFDRKVLRYFRKDGH 73
            DI+QIL+EAQHRWLRPAEICEIL NY +FRIAPE  H PPSGSLFLFDRKVLRYFRKDGH
Sbjct: 1    DIQQILLEAQHRWLRPAEICEILTNYQRFRIAPEPAHMPPSGSLFLFDRKVLRYFRKDGH 60

Query: 74   NWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWMLEEELSHIVLVHYR 133
            NWRKKKDGKTVKEAHERLK+GSVDVLHCYYAHGE+NENFQRRSYW+LEEELSHIVLVHYR
Sbjct: 61   NWRKKKDGKTVKEAHERLKSGSVDVLHCYYAHGEDNENFQRRSYWLLEEELSHIVLVHYR 120

Query: 134  EVKGNRTNFNRAKVAEGATPYSQENEETIPNSEVEGSQSSGFHPNSYQMPSQTAD-TSLN 192
            EVKG RTNFNR K  E   PYSQE E+T+P+SE++ S SS FHPN YQ+P++T D TS+N
Sbjct: 121  EVKGTRTNFNRIKEHEECIPYSQETEDTMPSSEMDTSVSSRFHPNGYQVPTRTTDTTSMN 180

Query: 193  SAQASEYEDAESVYNNQASSRFHSFLDLQQPVAEKIDAGLADPYYPSSLTNNYQGKFSVV 252
            SAQASEYEDAESVYNNQASS FHSFL++Q+P  E+ID G +  Y   + +++YQGK S V
Sbjct: 181  SAQASEYEDAESVYNNQASSTFHSFLEVQKPAMERIDTGSSVHYDHMTFSSDYQGKLSAV 240

Query: 253  PGADFISPAQTDKSRNSNDTGLTYEPQKNLDFPSWEDVLQNCSQGVGSQP--------EA 304
            PG D IS AQ DK++ +N T    EPQK +D PSWEDVL+N ++G  S P        + 
Sbjct: 241  PGMDVISLAQVDKTKETNGTESACEPQKVIDLPSWEDVLENYARGTESVPFQTLLSQDDT 300

Query: 305  LGDIPNQGYDILGEPFTNSFGERKEFGSHLQTRGEWQASRNDSSHLSNWPMDQKVYLDSA 364
            +G IP Q   IL +  TNSF +R++ G                                 
Sbjct: 301  VGIIPKQEDGILEKLLTNSFDKREDIGR-------------------------------- 328

Query: 365  HDLTSQSCEQGAAHDGLLDSLRPPHAHPN---MENDVHEQLPNAEHGHLLKSDPESSLTI 421
            +DLT++  +Q      L+++L P     N   ++ND+  Q  NA+HG          +T+
Sbjct: 329  YDLTARFPDQQLDSGNLINTLEPLCTQENDLHIQNDIQIQPANADHG----------MTL 378

Query: 422  DGKSFYSSAIKQHLIDGS-TEGLKKLDSFNRWMSKELGDVKESNMQSSSGAYWETVESEN 480
            +GKS YSS++K H++DGS TEGLKKLDSF RWMSKELGDV E  +QSSSG+YW T ESEN
Sbjct: 379  EGKSMYSSSVKHHILDGSGTEGLKKLDSFTRWMSKELGDV-EPQVQSSSGSYWITAESEN 437

Query: 481  GVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAE 540
            GVDDS    Q  LD Y++SPSLSQDQL+SIIDFSPNWAY  +E+KVLI GRFL  ++ AE
Sbjct: 438  GVDDSSNPSQGNLDAYLLSPSLSQDQLFSIIDFSPNWAYAGTEIKVLIMGRFLKGREAAE 497

Query: 541  NCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHI 600
            NC+WS MFGE+EVPAE++A GVLRC+T S K GR+PFYVTCSNR++CSEVREFEY  SH 
Sbjct: 498  NCQWSIMFGEVEVPAEVIADGVLRCNTPSHKAGRIPFYVTCSNRVACSEVREFEY-LSHT 556

Query: 601  PDVDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDD 660
             D+       D  +E+L M+FGKLL L+SVS   YD S++ +I  L+SKI+SLL ++N+ 
Sbjct: 557  QDITYY--YSDSVTEDLNMRFGKLLSLSSVSPSKYDSSSVDEI--LSSKINSLLNEDNET 612

Query: 661  WDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFA 720
            WD M KLT+EE FSSE+VKE+LVQKLLKE+L VWL+QKA+EGGKGP VLD  GQGVLHFA
Sbjct: 613  WDQMFKLTSEEGFSSEKVKEQLVQKLLKEQLHVWLLQKASEGGKGPSVLDEGGQGVLHFA 672

Query: 721  AALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTP 780
            AALGYDWALEPT VAGV++NFRDVNGWTALHWAA  GRERTVASLI LGAAPGAL+DPTP
Sbjct: 673  AALGYDWALEPTIVAGVSVNFRDVNGWTALHWAASYGRERTVASLIHLGAAPGALTDPTP 732

Query: 781  KYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGATAVQTVPQR 840
            KYP+ RTPADLAS+ GHKGI+G+LAES LS+ LS+++L K+DG  AE             
Sbjct: 733  KYPTSRTPADLASANGHKGISGFLAESALSAHLSSLNLEKQDGKAAE------------- 779

Query: 841  CPTPVSDGDLPYGLSMKDSLAAVRNATQAAARIHQVFRVQSFQKKQLKEYGNDTFGISDE 900
                 +D DLP  L +KDSLAAV NATQAAARIHQVFRVQSFQKKQLKEYG+D  G+S E
Sbjct: 780  ----FNDADLPSRLPLKDSLAAVCNATQAAARIHQVFRVQSFQKKQLKEYGDDKLGMSHE 835

Query: 901  RALSLVAVKTQKPGHHDEPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVR 960
            RALSL+AVK+QK G +DEPVH AA RIQNKFR WKGRK+FLIIR++I+KIQA+VRGHQVR
Sbjct: 836  RALSLIAVKSQKAGQYDEPVH-AAIRIQNKFRGWKGRKEFLIIRQRIVKIQAHVRGHQVR 894

Query: 961  KNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETLTASSSMVATSAKEDDYDFLKEGRKQ 1020
            KNY+KIIWSVGI++KIILRWRR+GSGLRGFKSE LT  SSM    +K+DD DFLKEGR+Q
Sbjct: 895  KNYRKIIWSVGILDKIILRWRRKGSGLRGFKSEALTDGSSMQVVQSKDDDDDFLKEGRRQ 954

Query: 1021 KEERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQETKA 1060
             EER Q ALARVKSM Q+PEAR+QY RL NVV EIQE K 
Sbjct: 955  TEERSQIALARVKSMHQHPEAREQYCRLRNVVAEIQEAKV 994

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511089|ref|XP_003524262.1| PREDICTED: calmodulin-binding transcription activator 3-like [Glycine max]

 Score = 1298 bits (3359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 676/1117 (60%), Positives = 828/1117 (74%), Gaps = 35/1117 (3%)

Query: 1    MADSRRFALGNQLDIEQILIEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLF 60
            MA++R +   +QLDI+QI++EAQHRWLRPAEIC IL N+ KF IA E  H PPSGSLFLF
Sbjct: 1    MAEARHYVPPSQLDIKQIILEAQHRWLRPAEICAILSNHKKFLIASEPAHMPPSGSLFLF 60

Query: 61   DRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWML 120
            DRKVLRYFRKDGHNWRKKKDGKTV+EAHERLKAGSVDVLHCYYAHGEENENF+RR+YW+L
Sbjct: 61   DRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENENFRRRTYWLL 120

Query: 121  EEELSHIVLVHYREVKGNRTNFNRAKVAEGATPYSQENEETIPNSEVEGSQSSGFHPNSY 180
            EEELSHIVLVHYR VKG + NF  AK  E   PY+Q+ ++ +P +E+E S SS  HP+SY
Sbjct: 121  EEELSHIVLVHYRHVKGTKANFTCAKENEETLPYAQQTDKIMPKTEMETSLSSTLHPHSY 180

Query: 181  QMPSQTADTSLNSAQASEYEDAESVYNNQASSRFHSFLDLQQPVAEKIDAGLADPYYPSS 240
            Q+PSQT D S+NS+QASEYE+AES +NN ASS F+SFL+L++PV EKI    AD Y P  
Sbjct: 181  QVPSQTMDRSMNSSQASEYEEAESAFNNHASSEFYSFLELERPV-EKITPQPADSYSPRP 239

Query: 241  LTNNYQGKFSVVPGADFISPAQTDKSRNSNDTGLTYEPQKNLDFPSWEDVLQN--CSQGV 298
            LTN+ Q K  V+PG ++IS  Q +K ++ ++ GLTYE  K L F SWE +L+N   SQ V
Sbjct: 240  LTND-QEKSPVIPGVNYISLTQDNKIKDIHNFGLTYESPKPLGFSSWEGILKNNAGSQHV 298

Query: 299  GSQPEALGDIPN---------QGYDILGEPFTNSFGERKEFGSHLQTRGEWQASRNDSSH 349
              QP   G  P+         QG++I+    T S  ++ E GS +Q  G WQA   DS  
Sbjct: 299  PFQPLFPGTQPDNMGINSKFSQGHEIMVPYLTTSIAKQHENGSLIQAEGNWQAYDVDSLR 358

Query: 350  LSNWPMDQKVYLDSAHDLTSQSCEQGAAHDGLLDSLRPPHAHPN------MENDVHEQLP 403
            +S+WP+D   Y  S+ D+T  + EQ      L  SL     HP       M+ND  E+L 
Sbjct: 359  MSSWPID-SAYSGSSCDITCSNREQEVNDVDLQKSLEQCLLHPYKQNKVFMQNDPQEKLL 417

Query: 404  NAEHGHLLKSDPESSLTIDGKSFYSSAIKQHLIDGS--TEGLKKLDSFNRWMSKELGDVK 461
            N +    +KSD E++  +DG        K+ L+DGS   EGLKKLDSFN+WMSKEL DV+
Sbjct: 418  NEKEK--IKSDLEANRILDGIEDTYFTFKRTLLDGSPAEEGLKKLDSFNQWMSKELADVE 475

Query: 462  ESNMQSSSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAYVS 521
            ESN  S+SG YW+TVESEN V ++ +  Q  LDTY++ PS+S DQL+SIID+SP+WA+  
Sbjct: 476  ESNKPSTSGGYWDTVESENEVGNTTIPSQGHLDTYVLDPSVSHDQLFSIIDYSPSWAFEG 535

Query: 522  SEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTC 581
            SE+KV+I+GRFL SQ EAE  KWSCMFGE+EVPAEI+A GVL CHT   K GRVPFYVTC
Sbjct: 536  SEIKVIISGRFLRSQHEAEQGKWSCMFGEVEVPAEIIAKGVLCCHTPPHKAGRVPFYVTC 595

Query: 582  SNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLS 641
            SNRL+CSEVREF+++ ++ P+V+        T +   ++FG+LL L      N D  ++S
Sbjct: 596  SNRLACSEVREFDFQVNYTPEVNTTGENRGSTFDTFSIRFGELLSLGHAFPQNSDSISVS 655

Query: 642  DISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAE 701
            + SQL SKI+SLL++E DDWD +LKLT EE FS E ++E+L+Q LLK+KL  WL+QK  E
Sbjct: 656  EKSQLRSKINSLLREEEDDWDKLLKLTQEEDFSPENLQEQLLQNLLKDKLHAWLLQKITE 715

Query: 702  GGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERT 761
             GKGP +LD  GQGVLHFA+ALGYDWALEPT VAGVN+NFRDVNGWTALHWAA+CGRERT
Sbjct: 716  EGKGPNILDEGGQGVLHFASALGYDWALEPTIVAGVNVNFRDVNGWTALHWAAFCGRERT 775

Query: 762  VASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKK 821
            VA LI+LGAAPGAL+DP P++PSGRTPADLAS+ GHKGIAGYLAES LS+ L+ + LN+ 
Sbjct: 776  VAFLISLGAAPGALTDPCPEHPSGRTPADLASANGHKGIAGYLAESSLSAHLTTLDLNR- 834

Query: 822  DGDVAEVTGATAVQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNATQAAARIHQVFRVQS 881
              D  E +GA  VQ V         DG L Y LS+KDSLAAVRNAT AAARIHQVFR+QS
Sbjct: 835  --DAGENSGAKVVQRVQNIAQVNDLDG-LSYELSLKDSLAAVRNATHAAARIHQVFRMQS 891

Query: 882  FQKKQLKEYGNDTFGISDERALSLVA--VKTQKPGHHDEPVHAAATRIQNKFRSWKGRKD 939
            FQ+KQLKEY +D  G+SDERALSLV   +K+ K G  DEPVHAAA RIQNKFRSWKGR++
Sbjct: 892  FQRKQLKEYDDDKLGLSDERALSLVKMNMKSHKSGPRDEPVHAAAVRIQNKFRSWKGRRE 951

Query: 940  FLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETLTASS 999
            FL+IR++I+KIQA+VRGHQVRK+  KIIWSVGI+EK+ILRWRR+GSGLRGFK E  +  +
Sbjct: 952  FLMIRQRIVKIQAHVRGHQVRKSCGKIIWSVGILEKVILRWRRKGSGLRGFKPEANSEGT 1011

Query: 1000 SMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQETK 1059
             +   S+ +DDYD LKEGRKQ E+RLQKALARVKSMVQYPEARDQY RLLNVV EIQE +
Sbjct: 1012 MIQDVSSTDDDYDVLKEGRKQTEQRLQKALARVKSMVQYPEARDQYHRLLNVVTEIQENQ 1071

Query: 1060 AM---ALSNAEETADFDDDLVDIEALLD-DTLMPNAS 1092
                 + +N+EE  +F  DL D+EALLD D  MP A+
Sbjct: 1072 VKHESSYNNSEEPREF-GDLNDLEALLDEDIFMPTAT 1107

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301030829|gb|ADK47999.1| calmodulin-binding protein [Solanum lycopersicum]

 Score = 1294 bits (3348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/1091 (62%), Positives = 817/1091 (74%), Gaps = 32/1091 (2%)

Query: 1    MADSRRFALGNQLDIEQILIEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLF 60
            MADSRR+ L  QLDIEQIL+EAQHRWLRPAEICEIL+NY KFRIAPE P+ PPSGSLFLF
Sbjct: 1    MADSRRYGLNAQLDIEQILLEAQHRWLRPAEICEILKNYQKFRIAPEPPNRPPSGSLFLF 60

Query: 61   DRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWML 120
            DRKVLRYFRKDGH+WRKK+DGKTVKEAHERLKAGS+DVLHCYYAHGEENENFQRRSYWML
Sbjct: 61   DRKVLRYFRKDGHSWRKKRDGKTVKEAHERLKAGSIDVLHCYYAHGEENENFQRRSYWML 120

Query: 121  EEELSHIVLVHYREVKGNRTNFNRAKVAEGATPYSQENEETIPNSEVEGSQSSGFHPNSY 180
            EEE+SHIVLVHYREVKGNRTNF+R +  +  TP  QE +E + +SEV+ S S+ F+PN Y
Sbjct: 121  EEEMSHIVLVHYREVKGNRTNFSRIREPQQVTPDLQETDEDVHSSEVDSSASAKFYPNDY 180

Query: 181  QMPSQTADT-SLNSAQASEYEDAESVYNNQASSRFHSFLDLQQPVAEKIDAGLADPYYPS 239
            Q+ SQ  DT S +SAQASEYEDAESVYN   +S FHSFLD Q    +    GLA PY+P 
Sbjct: 181  QVNSQVTDTTSFSSAQASEYEDAESVYNQHPTSGFHSFLDAQPSAGD----GLAVPYHPI 236

Query: 240  SLTNNYQGKFSVVPGADF--ISPAQTDKSRNSNDTGLTYEPQKNLDFPSWEDVLQN---C 294
              +N+ Q +F+   G  F  I P   + S     T  TY P +NLDF SW  +  N    
Sbjct: 237  PFSND-QVQFAGSSGTSFSSIPPGNGNTS-----TANTYVPSRNLDFASWGTISVNNPAA 290

Query: 295  SQGVGSQPEALGDIPN----QGYDILGEPFTNSFGERKEFGSHLQTRGEWQASRNDSSHL 350
             Q +  QP       N    QG   +G+  +N F  R+E  +H+   G WQ S  DSS +
Sbjct: 291  YQSLHFQPSGQSSANNMMHEQGNTTMGQICSNDF-TRQEHENHIDGLGNWQTSEVDSSFI 349

Query: 351  SNWPMDQKVYLD-SAHDLTSQSCEQGAAHDGLLDS--LRPPH--AHPNMENDVHEQLPNA 405
            S W MDQK+  D ++      S   G  H   L++  L P     HP ++N++  QL +A
Sbjct: 350  SKWSMDQKLNPDLTSGQTIGSSGVYGVEHHNSLEASQLLPAQQDKHP-IQNELQSQLSDA 408

Query: 406  EHGHLLKSDPESSLTIDGKSFYSSAIKQHLIDG--STEGLKKLDSFNRWMSKELGDVKES 463
              G  L +D + +L++  K+ YS A+KQ L+DG    EGLKKLDSF+RW+SKELGDV ES
Sbjct: 409  NIGGSLNADLDHNLSLGVKTDYS-ALKQPLLDGVLKREGLKKLDSFDRWVSKELGDVSES 467

Query: 464  NMQSSSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAYVSSE 523
            +MQS+S +YW+ V  E+GV +S ++ Q +LDTY++SPSL+QDQ++SIIDFSPNWA+  SE
Sbjct: 468  HMQSNSSSYWDNVGDEDGVGNSTIASQVQLDTYVLSPSLAQDQIFSIIDFSPNWAFSGSE 527

Query: 524  VKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSN 583
            +KVLITGRFL SQQE ENC W+CMFGE+EVPAE++A GVLRCHT  QK GRVPFY+TCSN
Sbjct: 528  IKVLITGRFLKSQQEVENCSWACMFGELEVPAEVIADGVLRCHTPVQKAGRVPFYITCSN 587

Query: 584  RLSCSEVREFEYRASHIPDVDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDI 643
            RL+CSEVREFE+R +   DV    N    +   L M+FGKLL L S  +    P +  ++
Sbjct: 588  RLACSEVREFEFRVTEGQDVVANPNSCSSSESLLHMRFGKLLSLESFVSQTSPPISEDNV 647

Query: 644  SQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGG 703
            S ++SKI+SLL+D++++W+ ML LT E  F +E+VK++L+QKLLKEKL VWL+QK AEGG
Sbjct: 648  SYISSKINSLLRDDDNEWEEMLHLTNENNFMAEKVKDQLLQKLLKEKLHVWLLQKVAEGG 707

Query: 704  KGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVA 763
            KGP +LD  GQGVLHFAAALGYDWA+ PT  AGV++NFRDVNGWTALHWAA  GRERTV 
Sbjct: 708  KGPNILDEGGQGVLHFAAALGYDWAVPPTIAAGVSVNFRDVNGWTALHWAASYGRERTVG 767

Query: 764  SLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDG 823
             LI+LGAA GAL+DPTPK+PSGRTPADLASS GHKGIAGYLAES LSS L ++ L +K  
Sbjct: 768  FLISLGAATGALTDPTPKHPSGRTPADLASSNGHKGIAGYLAESSLSSHLFSLELKEKKQ 827

Query: 824  DVAEVTGATAVQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNATQAAARIHQVFRVQSFQ 883
               E     AVQTV +R  TP  DGD  +G+S+KDSLAAVRNATQAAARIHQVFRVQSFQ
Sbjct: 828  GENEQAFGEAVQTVSERTATPAWDGDWSHGVSLKDSLAAVRNATQAAARIHQVFRVQSFQ 887

Query: 884  KKQLKEYGNDTFGISDERALSLVAVKTQKPGHHDEPVHAAATRIQNKFRSWKGRKDFLII 943
            +KQLKEYG   FG+SDERAL L+A+KT + G HDEP HAAA RIQNKFRSWKGR+DFL+I
Sbjct: 888  RKQLKEYGGSEFGLSDERALPLLAMKTNRAGQHDEP-HAAAVRIQNKFRSWKGRRDFLLI 946

Query: 944  RKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETLTASSSMVA 1003
            R++IIKIQA+VRGHQVR  YK IIWSVGI+EK+ILRWRR+GSGLRGFK E  T  S+M  
Sbjct: 947  RQRIIKIQAHVRGHQVRNKYKNIIWSVGILEKVILRWRRKGSGLRGFKPEAPTEGSNMQD 1006

Query: 1004 TSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQETKAMAL 1063
               +EDDYDFLKEGRKQ EERLQKAL RVKSMVQYPEARDQYRRLLNVV+++QE  + A 
Sbjct: 1007 QPVQEDDYDFLKEGRKQTEERLQKALERVKSMVQYPEARDQYRRLLNVVSDMQEPNSTAA 1066

Query: 1064 S-NAEETADFD 1073
            S N+ E  DF+
Sbjct: 1067 SYNSAEAVDFN 1077

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528461|ref|XP_003532821.1| PREDICTED: calmodulin-binding transcription activator 3-like [Glycine max]

 Score = 1277 bits (3305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 670/1129 (59%), Positives = 830/1129 (73%), Gaps = 51/1129 (4%)

Query: 1    MADSRRFALGNQLDIEQILIEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLF 60
            MA++R +A  +QLDI+QI++EAQHRWLRPAEIC IL NY KFRIAPE  H PPSGSLFLF
Sbjct: 1    MAEARLYAPPSQLDIKQIILEAQHRWLRPAEICAILGNYKKFRIAPEPAHMPPSGSLFLF 60

Query: 61   DRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWML 120
            DRKVLR+FRKDGHNWRKKKDGKTV+EAHERLKAGSVDVLHCYYAHGEENENFQRR+YW+L
Sbjct: 61   DRKVLRHFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENENFQRRTYWLL 120

Query: 121  EEELSHIVLVHYREVKGNRTNFNRAKVAEGATPYSQENEETIPNSEVEGSQSSGFHPNSY 180
            EEELSHIVLVHYR+VKG + NF  AK  E + PY+Q+ ++ +P +E++ S SS  HP+SY
Sbjct: 121  EEELSHIVLVHYRQVKGTKANFTSAKENEESLPYAQQTDKIMPQTEMDTSLSSTLHPHSY 180

Query: 181  QMPSQTADTSLNSAQASEYEDAESVYNNQASSRFHSFLDLQQPVAEKIDAGLADPYYPSS 240
            Q+PS+T DTS+NSAQ SEYE+AES +NN ASS F+SFL+LQ+PV EKI    AD Y P  
Sbjct: 181  QVPSKTVDTSMNSAQTSEYEEAESAFNNHASSEFYSFLELQRPV-EKISPQPADFYSPRP 239

Query: 241  LT--------------NNYQGKFSVVPGADFISPAQTDKSRNSNDTGLTYEPQKNLDFPS 286
            L                + Q K  ++PG ++IS  Q +K+++  + GLTYE  K L F S
Sbjct: 240  LIRKSVPNMNHIIETGTDDQEKLPIIPGVNYISLTQDNKNKDILNAGLTYESPKPLGFSS 299

Query: 287  WEDVLQN--CSQGV-------GSQPEALGDIPN--QGYDILGEPFTNSFGERKEFGSHLQ 335
            WE +L+N   SQ V       G+QP+ +G   N  QG +I+    T S  ++ E GS ++
Sbjct: 300  WEGILENNAGSQHVHFQPLFPGTQPDNMGINSNFSQGEEIMVPYLTTSIAKQHENGSIIK 359

Query: 336  TRGEWQASRNDSSHLSNWPMDQKVYLDSAHDLTSQSCEQGAAHDGLLDSLRPP--HAHPN 393
              G WQ    DS  +S+WP+D   Y  S  +++  +CEQ         SL     H+H  
Sbjct: 360  AEGNWQVYDVDSLRMSSWPID-SAYSGSTCEVSCSNCEQEVNDVDFQKSLEQCLLHSHKQ 418

Query: 394  ----MENDVHEQLPNAEHGHLLKSDPESSLTIDGKSFYSSAIKQHLIDG--STEGLKKLD 447
                M+ND+ E+L N       K   +S+L   G      + K+ L+DG  + EGLKKLD
Sbjct: 419  NKVLMQNDLQEKLLNE------KEKIKSNLEAYGIEDTYLSFKRTLLDGPPAEEGLKKLD 472

Query: 448  SFNRWMSKELGDVKESNMQSSSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQL 507
            SFN+WMSKELGDV+ESN  S+SG YW+TVE+EN V ++ +  Q  LDTY++ PS+S DQL
Sbjct: 473  SFNQWMSKELGDVEESNKPSTSGGYWDTVETENEVGNTTIPSQGHLDTYVLDPSVSHDQL 532

Query: 508  YSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHT 567
            +SIID+SP+WA+  SE+KV+I+G FL SQ EAE CKWSCMFGE+EVPA I+A GVL CHT
Sbjct: 533  FSIIDYSPSWAFEGSEIKVIISGEFLRSQHEAEQCKWSCMFGEVEVPAVIIAKGVLCCHT 592

Query: 568  SSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRMQFGKLLCL 627
               K GRVPFYVTCSNRL+CSEVREF+++  + P+    +N G  T +   ++FG+LL L
Sbjct: 593  PPHKAGRVPFYVTCSNRLACSEVREFDFQVHYTPEDTTGENRGS-TFDTFSIRFGELLSL 651

Query: 628  TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLL 687
                  N D  ++S+ SQL SKI+SLL++++DDWD +LKLT E+ FS E ++E+L+Q LL
Sbjct: 652  GHAFPQNSDSISVSEKSQLRSKINSLLREDDDDWDKLLKLTQEKDFSPENLREQLLQNLL 711

Query: 688  KEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGW 747
            K+KL  WL+QK  E GKGP VLD  GQGVLHFAAALGYDWALEPT VAGVN+NFRDVNGW
Sbjct: 712  KDKLHAWLLQKITEEGKGPNVLDEGGQGVLHFAAALGYDWALEPTIVAGVNVNFRDVNGW 771

Query: 748  TALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAES 807
            T+LHWAA+CGRERTVA LI+LGAAPGAL+DP P++PSGRTPADLAS+ GHKGIAGYLAES
Sbjct: 772  TSLHWAAFCGRERTVAFLISLGAAPGALTDPCPEHPSGRTPADLASANGHKGIAGYLAES 831

Query: 808  DLSSALSAISLNKKDGDVAEVTGATAVQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNAT 867
             LS+ L+ + LN+   D  E +GA  VQ +         DG L Y LS+KDSLAAV NAT
Sbjct: 832  SLSAHLTTLDLNR---DAGENSGAKVVQRLQNIAQVNDLDG-LSYELSLKDSLAAVCNAT 887

Query: 868  QAAARIHQVFRVQSFQKKQLKEYGNDTFGISDERALSLVA--VKTQKPGHHDEPVHAAAT 925
            QAAARIHQVFR+QSFQ+KQLKEY +D  G+SDERALSL+   VK+ K G  DEPVHAAA 
Sbjct: 888  QAAARIHQVFRMQSFQRKQLKEYDDDKLGLSDERALSLIKMNVKSHKSGPRDEPVHAAAI 947

Query: 926  RIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGS 985
            RIQNKFRSWKGR++FL+IR++I+KIQA+VRGHQVRK+  KIIWSVGI+EK+ILRWRR+GS
Sbjct: 948  RIQNKFRSWKGRREFLMIRQRIVKIQAHVRGHQVRKSCGKIIWSVGILEKVILRWRRKGS 1007

Query: 986  GLRGFKSETLTASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQY 1045
            GLRGFK E  +  + +   S+ +DDYD LKEGRKQ E+RLQKALARVKSMVQYPEARDQY
Sbjct: 1008 GLRGFKPEANSEGTMIQDVSSTDDDYDVLKEGRKQTEQRLQKALARVKSMVQYPEARDQY 1067

Query: 1046 RRLLNVVNEIQETKAMALS-NAEETADFDDDLVDIEALLD-DTLMPNAS 1092
             RLLNVV EIQE +  + S N+EE  +F  DL D+EALLD D  MP A+
Sbjct: 1068 HRLLNVVTEIQENQHESSSNNSEEPREF-GDLNDLEALLDEDIFMPTAT 1115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821451|ref|XP_002878608.1| hypothetical protein ARALYDRAFT_481093 [Arabidopsis lyrata subsp. lyrata] gi|297324447|gb|EFH54867.1| hypothetical protein ARALYDRAFT_481093 [Arabidopsis lyrata subsp. lyrata]

 Score = 1071 bits (2769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/1110 (53%), Positives = 745/1110 (67%), Gaps = 111/1110 (10%)

Query: 1    MADSRRFALGNQLDIEQILIEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLF 60
            MA++RRF+  N+LD+ QIL EA+HRWLRP EICEIL+NY +F+I+ E P TP SGS+F+F
Sbjct: 1    MAEARRFSPDNELDVGQILSEARHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMF 60

Query: 61   DRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWML 120
            DRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHG++NENFQRRSYW+L
Sbjct: 61   DRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGQDNENFQRRSYWLL 120

Query: 121  EEELSHIVLVHYREVKGNR--TNFNRAKVAEGATPYSQENEETIPNSEVEGSQSSGFHPN 178
            +EELSHIV VHY EVKG+R  T++NR +  E      QE  E +  SE +G  S  ++ N
Sbjct: 121  QEELSHIVFVHYLEVKGSRVSTSYNRMQRTEDTARSPQETGEAL-TSEHDGYASCSYNQN 179

Query: 179  SYQMPSQTADT-SLNSAQASEYEDAESVYNNQASSRFHSFLDLQQPVAEKIDAGLADPYY 237
             +   SQT D+ S+N   + E EDAES YN   SS  HS  + QQP       G  DPY+
Sbjct: 180  DHSNHSQTTDSASVNGFHSPELEDAESAYNQHGSSIVHSHQEFQQPAIGGSLTGF-DPYH 238

Query: 238  PSSLT--NNYQGKFSVVPGADFISPAQTDKSRNSNDTGLT--YEPQKNLDFPSWEDVLQN 293
              SLT  ++YQ +   +P  D  S    DK +  N  G+T   + +K++D  +WE++L N
Sbjct: 239  QISLTPRDSYQKELRTIPVTD--SSIMVDKCKTINSPGVTNGLKNRKSIDSQTWEEILGN 296

Query: 294  CSQGVGSQPEALGDIPNQGYDILGEPFTNSFGERKEFGSHLQTRGEWQASRNDSSHLSNW 353
            C  GV    EAL   PN  +++L +   +     ++F S    +G    S+N        
Sbjct: 297  CGSGV----EALPLQPNSEHEVLDQILESYSFTMQDFAS---LQGSMVKSQNQE------ 343

Query: 354  PMDQKVYLDSAHDLTSQSCEQGAAHDGLLDSLRPPHAHPNMENDVHEQLPNAEHGHLLKS 413
                   L+S   LTS S       D  L+++                            
Sbjct: 344  -------LNSG--LTSDSTVWFQGQDVELNAI---------------------------- 366

Query: 414  DPESSLTIDGKSFYSSAIKQHLIDGST--EGLKKLDSFNRWMSKELGDV------KESNM 465
               S+L  + K+ Y S +KQHL+DG+   EGLKK+DSFNRWMSKELGDV       ES  
Sbjct: 367  ---SNLASNEKAPYLSTMKQHLLDGALGEEGLKKMDSFNRWMSKELGDVGVIADANESFT 423

Query: 466  QSSSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAYVSSEVK 525
            QSSS  YWE VESE+G   +G + +  LD Y+MSPSLS++QL+SI DFSP+WAYV  EV 
Sbjct: 424  QSSSRTYWEEVESEDG--SNGHNSRRELDGYVMSPSLSKEQLFSINDFSPSWAYVGCEVV 481

Query: 526  VLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRL 585
            V +TG+FL +++E E  +WSCMFG+ EVPA++++ G+L+C     + GRVPFYVTCSNRL
Sbjct: 482  VFVTGKFLKTREETEIGEWSCMFGQTEVPADVISNGILQCVAPMHEAGRVPFYVTCSNRL 541

Query: 586  SCSEVREFEYRA--SHIPDVDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDI 643
            +CSEVREFEY+   S + D +  D     T   L  +F KLLC +   + +    N S +
Sbjct: 542  ACSEVREFEYKVAESQVFDRETDDES---TINILEARFVKLLC-SKSESSSPVSGNDSHL 597

Query: 644  SQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGG 703
            SQL+ KIS LL + +D  D ML      + S E +K  L+Q+ LKE L  WL+QK AEGG
Sbjct: 598  SQLSEKISLLLFENDDQLDQMLM----NEISQENMKNNLLQEFLKESLHSWLLQKIAEGG 653

Query: 704  KGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVA 763
            KGP VLD  GQGVLHFAA+LGY+WALEPT +AGV+++FRDVNGWTALHWAA+ GRER + 
Sbjct: 654  KGPSVLDEGGQGVLHFAASLGYNWALEPTIIAGVSVDFRDVNGWTALHWAAFFGRERIIG 713

Query: 764  SLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDG 823
            SLIALGAAPG L+DP P +PSG TP+DLA + GHKGIAGYL+E  L + +S +SLN  + 
Sbjct: 714  SLIALGAAPGTLTDPNPDFPSGSTPSDLAYANGHKGIAGYLSEYALRAHVSLLSLNDNNA 773

Query: 824  DVAEVTGATAVQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNATQAAARIHQVFRVQSFQ 883
            +  E   + +  +                   + DSL AVRNATQAAARIHQVFR QSFQ
Sbjct: 774  ETVETAPSPSSSS-------------------LTDSLTAVRNATQAAARIHQVFRAQSFQ 814

Query: 884  KKQLKEYGNDTFGISDERALSLVAVKTQKPG--HHDEPVHAAATRIQNKFRSWKGRKDFL 941
            KKQLKE+G+   G+S+ERALS++A KT K G  H D+ V AAA RIQNKFR +KGRKD+L
Sbjct: 815  KKQLKEFGDRKLGMSEERALSMLAPKTHKSGRAHSDDSVQAAAIRIQNKFRGYKGRKDYL 874

Query: 942  IIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETLTASSSM 1001
            I R++IIKIQA+VRG+QVRKNY+KIIWSVGI+EK+ILRWRR+G+GLRGFKSE L     M
Sbjct: 875  ITRQRIIKIQAHVRGYQVRKNYRKIIWSVGILEKVILRWRRKGAGLRGFKSEALV--DKM 932

Query: 1002 VATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQETKA- 1060
               + KE+D DF K+GRKQ EERLQKALARVKSMVQYPEARDQYRRLLNVVN+IQE+K  
Sbjct: 933  QDGTEKEEDDDFFKQGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVNDIQESKVE 992

Query: 1061 MALSNAEETADFDDDLVDIEALL--DDTLM 1088
             AL N+E T  FDDDL+DIEALL  DDTLM
Sbjct: 993  KALENSEATC-FDDDLIDIEALLEDDDTLM 1021

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30681670|ref|NP_850023.1| calmodulin-binding transcription activator 3 [Arabidopsis thaliana] gi|186502240|ref|NP_001118361.1| calmodulin-binding transcription activator 3 [Arabidopsis thaliana] gi|75328728|sp|Q8GSA7.1|CMTA3_ARATH RecName: Full=Calmodulin-binding transcription activator 3; AltName: Full=Ethylene-induced calmodulin-binding protein 1; Short=EICBP1; AltName: Full=Ethylene-induced calmodulin-binding protein a; Short=EICBP.a; AltName: Full=Signal-responsive protein 1 gi|25229116|gb|AAN74651.1| calmodulin-binding transcription factor SR1 [Arabidopsis thaliana] gi|27311707|gb|AAO00819.1| Unknown protein [Arabidopsis thaliana] gi|41056727|gb|AAR98746.1| ethylene-induced calmodulin-binding protein 1 [Arabidopsis thaliana] gi|330252195|gb|AEC07289.1| calmodulin-binding transcription activator 3 [Arabidopsis thaliana] gi|330252196|gb|AEC07290.1| calmodulin-binding transcription activator 3 [Arabidopsis thaliana]

 Score = 1056 bits (2730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/1114 (53%), Positives = 750/1114 (67%), Gaps = 118/1114 (10%)

Query: 1    MADSRRFALGNQLDIEQILIEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLF 60
            MA++RRF+  ++LD+ QIL EA+HRWLRP EICEIL+NY +F+I+ E P TP SGS+F+F
Sbjct: 1    MAEARRFSPVHELDVGQILSEARHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMF 60

Query: 61   DRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWML 120
            DRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHG++NENFQRRSYW+L
Sbjct: 61   DRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGQDNENFQRRSYWLL 120

Query: 121  EEELSHIVLVHYREVKGNR--TNFNRAKVAEGATPYSQENEETIPNSEVEGSQSSGFHPN 178
            +EELSHIV VHY EVKG+R  T+FNR +  E A    QE  + +  SE +G  S  F+ N
Sbjct: 121  QEELSHIVFVHYLEVKGSRVSTSFNRMQRTEDAARSPQETGDAL-TSEHDGYASCSFNQN 179

Query: 179  SYQMPSQTADT-SLNSAQASEYEDAESVYNNQASSRFHSFLDLQQPVAEKIDAGLADPYY 237
             +   SQT D+ S+N   + E EDAES YN   SS  +S  +LQQP       G  DPYY
Sbjct: 180  DHSNHSQTTDSASVNGFHSPELEDAESAYNQHGSSTAYSHQELQQPATGGNLTGF-DPYY 238

Query: 238  PSSLT--NNYQGKFSVVPGADFISPAQTDKSRNSNDTGLT--YEPQKNLDFPSWEDVLQN 293
              SLT  ++YQ +   +P  D  S    DKS+  N  G+T   + +K++D  +WE++L N
Sbjct: 239  QISLTPRDSYQKELRTIPVTD--SSIMVDKSKTINSPGVTNGLKNRKSIDSQTWEEILGN 296

Query: 294  CSQGVGSQPEALGDIPNQGYDILGEPFTNSFGERKEFGSHLQTRGEWQASRNDSSHLSN- 352
            C  GV    EAL   PN  +++L +   +SF   ++F S  ++  + Q    +S   S+ 
Sbjct: 297  CGSGV----EALPLQPNSEHEVLDQILESSF-TMQDFASLQESMVKSQNQELNSGLTSDR 351

Query: 353  --WPMDQKVYLDSAHDLTSQSCEQGAAHDGLLDSLRPPHAHPNMENDVHEQLPNAEHGHL 410
              W   Q + L++  +L S                             +E+ P       
Sbjct: 352  TVWFQGQDMELNAISNLAS-----------------------------NEKAP------- 375

Query: 411  LKSDPESSLTIDGKSFYSSAIKQHLIDGST--EGLKKLDSFNRWMSKELGDV------KE 462
                            Y S +KQHL+ G+   EGLKK+DSFNRWMSKELGDV       E
Sbjct: 376  ----------------YLSTMKQHLLHGALGEEGLKKMDSFNRWMSKELGDVGVIADANE 419

Query: 463  SNMQSSSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAYVSS 522
            S  QSSS  YWE VESE+G   +G + +  +D Y+MSPSLS++QL+SI DFSP+WAYV  
Sbjct: 420  SFTQSSSRTYWEEVESEDG--SNGHNSRRDMDGYVMSPSLSKEQLFSINDFSPSWAYVGC 477

Query: 523  EVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCS 582
            EV V +TG+FL +++E E  +WSCMFG+ EVPA++++ G+L+C     + GRVPFYVTCS
Sbjct: 478  EVVVFVTGKFLKTREETEIGEWSCMFGQTEVPADVISNGILQCVAPMHEAGRVPFYVTCS 537

Query: 583  NRLSCSEVREFEYRA--SHIPDVDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNL 640
            NRL+CSEVREFEY+   S + D +  D     T + L  +F KLLC  S +T      N 
Sbjct: 538  NRLACSEVREFEYKVAESQVFDREADDES---TIDILEARFVKLLCSKSENTSPVS-GND 593

Query: 641  SDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAA 700
            SD+SQL+ KIS LL + +D  D ML      + S E +K  L+Q+ LKE L  WL+QK A
Sbjct: 594  SDLSQLSEKISLLLFENDDQLDQMLM----NEISQENMKNNLLQEFLKESLHSWLLQKIA 649

Query: 701  EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 760
            EGGKGP VLD  GQGVLHFAA+LGY+WALEPT +AGV+++FRDVNGWTALHWAA+ GRER
Sbjct: 650  EGGKGPSVLDEGGQGVLHFAASLGYNWALEPTIIAGVSVDFRDVNGWTALHWAAFFGRER 709

Query: 761  TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNK 820
             + SLIALGAAPG L+DP P +PSG TP+DLA + GHKGIAGYL+E  L + +S +SLN 
Sbjct: 710  IIGSLIALGAAPGTLTDPNPDFPSGSTPSDLAYANGHKGIAGYLSEYALRAHVSLLSLND 769

Query: 821  KDGDVAEVTGATAVQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNATQAAARIHQVFRVQ 880
            K+ +  E+  + +  +                   + DSL AVRNATQAAARIHQVFR Q
Sbjct: 770  KNAETVEMAPSPSSSS-------------------LTDSLTAVRNATQAAARIHQVFRAQ 810

Query: 881  SFQKKQLKEYGNDTFGISDERALSLVAVKTQKPG--HHDEPVHAAATRIQNKFRSWKGRK 938
            SFQKKQLKE+G+   G+S+ERALS++A KT K G  H D+ V AAA RIQNKFR +KGRK
Sbjct: 811  SFQKKQLKEFGDKKLGMSEERALSMLAPKTHKSGRAHSDDSVQAAAIRIQNKFRGYKGRK 870

Query: 939  DFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETLTAS 998
            D+LI R++IIKIQA+VRG+Q RKNY+KIIWSVG++EK+ILRWRR+G+GLRGFKSE L   
Sbjct: 871  DYLITRQRIIKIQAHVRGYQFRKNYRKIIWSVGVLEKVILRWRRKGAGLRGFKSEALV-- 928

Query: 999  SSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQET 1058
              M   + KE+D DF K+GRKQ E+RLQKALARVKSMVQYPEARDQYRRLLNVVN+IQE+
Sbjct: 929  EKMQDGTEKEEDDDFFKQGRKQTEDRLQKALARVKSMVQYPEARDQYRRLLNVVNDIQES 988

Query: 1059 KA-MALSNAEETA-DFDDDLVDIEALL--DDTLM 1088
            K   AL N+E T  D DDDL+DIEALL  DDTLM
Sbjct: 989  KVEKALENSEATCFDDDDDLIDIEALLEDDDTLM 1022

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110741068|dbj|BAE98628.1| Calmodulin-binding transcription activator 3 [Arabidopsis thaliana]

 Score = 1054 bits (2725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/1114 (53%), Positives = 750/1114 (67%), Gaps = 118/1114 (10%)

Query: 1    MADSRRFALGNQLDIEQILIEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLF 60
            MA++RRF+  ++LD+ QIL EA+HRWLRP EICEIL+NY +F+I+ E P TP SGS+F+F
Sbjct: 1    MAEARRFSPVHELDVGQILSEARHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMF 60

Query: 61   DRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWML 120
            DRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHG++NENFQRRSYW+L
Sbjct: 61   DRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGQDNENFQRRSYWLL 120

Query: 121  EEELSHIVLVHYREVKGNR--TNFNRAKVAEGATPYSQENEETIPNSEVEGSQSSGFHPN 178
            +EELSHIV VHY EVKG+R  T+FNR +  E A    QE  + +  SE +G  S  F+ N
Sbjct: 121  QEELSHIVFVHYLEVKGSRVSTSFNRMQRTEDAARSPQETGDAL-TSEHDGYASCSFNQN 179

Query: 179  SYQMPSQTADT-SLNSAQASEYEDAESVYNNQASSRFHSFLDLQQPVAEKIDAGLADPYY 237
             +   SQT D+ S+N   + E EDAES YN   SS  +S  +LQQP       G  DPYY
Sbjct: 180  DHSNHSQTTDSASVNGFHSPELEDAESAYNQHGSSTAYSHQELQQPATGGNLTGF-DPYY 238

Query: 238  PSSLT--NNYQGKFSVVPGADFISPAQTDKSRNSNDTGLT--YEPQKNLDFPSWEDVLQN 293
              SLT  ++YQ +   +P  D  S    DKS+  N  G+T   + +K++D  +WE++L N
Sbjct: 239  QISLTPRDSYQKELRTIPVTD--SSIMVDKSKTINSPGVTNGLKNRKSIDSQTWEEILGN 296

Query: 294  CSQGVGSQPEALGDIPNQGYDILGEPFTNSFGERKEFGSHLQTRGEWQASRNDSSHLSN- 352
            C  GV    EAL   PN  +++L +   +SF   ++F S  ++  + Q    +S   S+ 
Sbjct: 297  CGSGV----EALPLQPNSEHEVLDQILESSF-TMQDFASLQESMVKSQNQELNSGLTSDR 351

Query: 353  --WPMDQKVYLDSAHDLTSQSCEQGAAHDGLLDSLRPPHAHPNMENDVHEQLPNAEHGHL 410
              W   Q + L++  +L S                             +E+ P       
Sbjct: 352  TVWFQGQDMELNAISNLAS-----------------------------NEKAP------- 375

Query: 411  LKSDPESSLTIDGKSFYSSAIKQHLIDGST--EGLKKLDSFNRWMSKELGDV------KE 462
                            Y S +K+HL+ G+   EGLKK+DSFNRWMSKELGDV       E
Sbjct: 376  ----------------YLSTMKEHLLHGALGEEGLKKMDSFNRWMSKELGDVGVIADANE 419

Query: 463  SNMQSSSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAYVSS 522
            S  QSSS  YWE VESE+G   +G + +  +D Y+MSPSLS++QL+SI DFSP+WAYV  
Sbjct: 420  SFTQSSSRTYWEEVESEDG--SNGHNSRRDMDGYVMSPSLSKEQLFSINDFSPSWAYVGC 477

Query: 523  EVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCS 582
            EV V +TG+FL +++E E  +WSCMFG+ EVPA++++ G+L+C     + GRVPFYVTCS
Sbjct: 478  EVVVFVTGKFLKTREETEIGEWSCMFGQTEVPADVISNGILQCVAPMHEAGRVPFYVTCS 537

Query: 583  NRLSCSEVREFEYRA--SHIPDVDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNL 640
            NRL+CSEVREFEY+   S + D +  D     T + L  +F KLLC  S +T      N 
Sbjct: 538  NRLACSEVREFEYKVAESQVFDREADDES---TIDILEARFVKLLCSKSENTSPVS-GND 593

Query: 641  SDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAA 700
            SD+SQL+ KIS LL + +D  D ML      + S E +K  L+Q+ LKE L  WL+QK A
Sbjct: 594  SDLSQLSEKISLLLFENDDQLDQMLM----NEISQENMKNNLLQEFLKESLHSWLLQKIA 649

Query: 701  EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 760
            EGGKGP VLD  GQGVLHFAA+LGY+WALEPT +AGV+++FRDVNGWTALHWAA+ GRER
Sbjct: 650  EGGKGPSVLDEGGQGVLHFAASLGYNWALEPTIIAGVSVDFRDVNGWTALHWAAFFGRER 709

Query: 761  TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNK 820
             + SLIALGAAPG L+DP P +PSG TP+DLA + GHKGIAGYL+E  L + +S +SLN 
Sbjct: 710  IIGSLIALGAAPGTLTDPNPDFPSGSTPSDLAYANGHKGIAGYLSEYALRAHVSLLSLND 769

Query: 821  KDGDVAEVTGATAVQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNATQAAARIHQVFRVQ 880
            K+ +  E+  + +  +                   + DSL AVRNATQAAARIHQVFR Q
Sbjct: 770  KNAETVEMAPSPSSSS-------------------LTDSLTAVRNATQAAARIHQVFRAQ 810

Query: 881  SFQKKQLKEYGNDTFGISDERALSLVAVKTQKPG--HHDEPVHAAATRIQNKFRSWKGRK 938
            SFQKKQLKE+G+   G+S+ERALS++A KT K G  H D+ V AAA RIQNKFR +KGRK
Sbjct: 811  SFQKKQLKEFGDKKLGMSEERALSMLAPKTHKSGRAHSDDSVQAAAIRIQNKFRGYKGRK 870

Query: 939  DFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETLTAS 998
            D+LI R++IIKIQA+VRG+Q RKNY+KIIWSVG++EK+ILRWRR+G+GLRGFKSE L   
Sbjct: 871  DYLITRQRIIKIQAHVRGYQFRKNYRKIIWSVGVLEKVILRWRRKGAGLRGFKSEALV-- 928

Query: 999  SSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQET 1058
              M   + KE+D DF K+GRKQ E+RLQKALARVKSMVQYPEARDQYRRLLNVVN+IQE+
Sbjct: 929  EKMQDGTEKEEDDDFFKQGRKQTEDRLQKALARVKSMVQYPEARDQYRRLLNVVNDIQES 988

Query: 1059 KA-MALSNAEETA-DFDDDLVDIEALL--DDTLM 1088
            K   AL N+E T  D DDDL+DIEALL  DDTLM
Sbjct: 989  KVEKALENSEATCFDDDDDLIDIEALLEDDDTLM 1022

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494747|ref|XP_002269599.2| PREDICTED: calmodulin-binding transcription activator 3-like [Vitis vinifera]

 Score = 1014 bits (2623), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/769 (69%), Positives = 621/769 (80%), Gaps = 26/769 (3%)

Query: 341  QASRNDSSHLSNWPMDQKVYLDSAHDLTSQSCEQGAAHDGLLDSLRPPHAHPN------M 394
            + S   S+HLS WP DQK++ DSA+ L+++   Q A    LL+SL P HA+P+      +
Sbjct: 943  KTSEGYSAHLSKWPGDQKLHSDSAYGLSTRFDIQEANCVDLLNSLEPGHAYPDGQKGHPL 1002

Query: 395  ENDVHEQLPNAEHGHLLKSDPESSLTIDGKSFYSSAIKQHLIDGST--EGLKKLDSFNRW 452
            +ND   QL N +HG   KSD E ++  +GK+ YSSA+KQ L+D S   EGLKK+DSFNRW
Sbjct: 1003 QNDFQIQLLNVDHGCYQKSDSERNMITEGKANYSSALKQPLLDSSLTEEGLKKVDSFNRW 1062

Query: 453  MSKELGDVKESNMQS---SSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYS 509
            MSKELGDV ES+MQS   SS AYW+TVESENGVD+S +SPQ  LDTYM+ PSLSQDQL+S
Sbjct: 1063 MSKELGDVNESHMQSRLSSSAAYWDTVESENGVDESSISPQGHLDTYMLGPSLSQDQLFS 1122

Query: 510  IIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSS 569
            IIDFSPNWAY  SEVKVLI G+FL  QQ+AE CKWSCMFGE+EVPAE+++ GVLRCHT  
Sbjct: 1123 IIDFSPNWAYAGSEVKVLIMGKFLKGQQDAEKCKWSCMFGEVEVPAEVISDGVLRCHTPI 1182

Query: 570  QKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENL-RMQFGKLLCLT 628
             K  RVPFYVTCSNRL+CSEVREFEYR +HI DVD AD     TSE L  M+F KLL L 
Sbjct: 1183 HKAERVPFYVTCSNRLACSEVREFEYRVNHIRDVDTADVSSGSTSEILLHMRFVKLLSLA 1242

Query: 629  SVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLK 688
              S  N   SN  D   LNSKI+SL++++ND+W+ ML LT+EE FS E+ KE+L+QKLLK
Sbjct: 1243 PSS--NSGLSNEGDRFPLNSKINSLMEEDNDEWEQMLMLTSEE-FSPEKAKEQLLQKLLK 1299

Query: 689  EKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWT 748
            EKL VWL+QKAAEGGKGP VLD  GQGVLHFAAALGYDWA+ PTT AGV++NFRDVNGWT
Sbjct: 1300 EKLHVWLLQKAAEGGKGPNVLDEDGQGVLHFAAALGYDWAIPPTTAAGVSVNFRDVNGWT 1359

Query: 749  ALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD 808
            ALHWAA+CGRERTV  LI+ GAAPGAL+DPTPKYP+GRTPADLASS GHKGIAGYLAES 
Sbjct: 1360 ALHWAAFCGRERTVPFLISQGAAPGALTDPTPKYPAGRTPADLASSNGHKGIAGYLAESA 1419

Query: 809  LSSALSAISLNK-KDGDVAEVTGATAVQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNAT 867
            LS+ L ++ L + K+ D AE++G  AVQT+ +R PTP+S GDLP    +KDSLAAV NAT
Sbjct: 1420 LSAHLQSLHLKETKEADAAEISGIKAVQTISERSPTPISTGDLP----LKDSLAAVCNAT 1475

Query: 868  QAAARIHQVFRVQSFQKKQLKEYGNDTFGISDERALSLVAVKTQKPGHHDEPVHAAATRI 927
            QAAARIHQVFRVQSFQKKQ KEY +  FG+SDE ALSL+AVK+ + G HDEPVHAAATRI
Sbjct: 1476 QAAARIHQVFRVQSFQKKQQKEYDDGKFGMSDEHALSLIAVKS-RLGQHDEPVHAAATRI 1534

Query: 928  QNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGL 987
            QNKFRSWKGRKDFLIIR++I+KIQA+VRGHQVRKNY+KIIWSVGI+EK+ILRWRR+GSGL
Sbjct: 1535 QNKFRSWKGRKDFLIIRQRIVKIQAHVRGHQVRKNYRKIIWSVGILEKVILRWRRKGSGL 1594

Query: 988  RGFKSETLTASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRR 1047
            RGFK ET T  +SM   S+KEDDYDFLKEGRKQ EERLQKALARVKSMVQYPEARDQYRR
Sbjct: 1595 RGFKPETHTEGTSMRDISSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRR 1654

Query: 1048 LLNVVNEIQETKAM---ALSNAEETADFDDDLVDIEALL-DDTLMPNAS 1092
            LLNVV EIQETK +   AL+++EE ADF DDL+D++ALL DDT MP AS
Sbjct: 1655 LLNVVTEIQETKVVYDRALNSSEEAADF-DDLIDLQALLDDDTFMPTAS 1702

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580898|ref|XP_002531268.1| calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis] gi|223529153|gb|EEF31132.1| calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]

 Score =  996 bits (2576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/942 (56%), Positives = 645/942 (68%), Gaps = 113/942 (11%)

Query: 167  VEGSQSSGFHPNSYQMPSQTADT-SLNSAQASEYEDAESVYNNQASSRFHSFLDLQQPVA 225
            ++ S SS FH +S Q+P+QT DT S++SAQASEYEDAESVY++Q SSRFHSFL++QQP  
Sbjct: 1    MDTSASSNFHHDSNQVPAQTTDTVSMSSAQASEYEDAESVYDHQVSSRFHSFLEVQQPAT 60

Query: 226  EKIDAGLADPYYPSSLTNNYQGKFSVVPGADFISPAQTDKSRNSNDTGLTYEPQKNLDFP 285
            EKI AG  D + P   +++Y+G+ S VP  +F+SPA+ DK  +++  GL Y+PQK  D P
Sbjct: 61   EKISAGFPDHHDPVLFSSDYRGRKSAVPKREFVSPARVDKVEDTDGAGLAYQPQKYFDLP 120

Query: 286  SWEDVLQNCSQGVGS---QP------EALGDIPNQGYDILGEPFTNSFGERKEFGSHLQT 336
            SWEDVL+NC+ G  S   QP      +  G IP Q  +IL + FTN              
Sbjct: 121  SWEDVLENCTPGTESLNFQPPFTSLADTKGIIPKQEDEILRQLFTN-------------- 166

Query: 337  RGEWQASRNDSSHLSNWPMDQKVYLDSAHDLTSQSCEQGAAHDGLLDSLRPPHAHPNMEN 396
                                     DS  DLT+   EQ      L+D L        +  
Sbjct: 167  ------------------------FDSTSDLTASFREQELVSGDLVDKLE-------LSQ 195

Query: 397  DVHEQLPNAEHGHLLKSDPESSLTIDGKSFYSSAIKQHLIDGSTEG--LKKLDSFNRWMS 454
                  P    G +  S+ E SL ++GKS YSSA KQHL+D +  G  LKKLDSFNRWMS
Sbjct: 196  TRGTDRPVEHGGQIQLSNREQSLILEGKSIYSSAGKQHLLDRALSGEDLKKLDSFNRWMS 255

Query: 455  KELGDVKESNMQSSSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFS 514
            K+                                                  L  IIDFS
Sbjct: 256  KD--------------------------------------------------LEIIIDFS 265

Query: 515  PNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGR 574
            PNWAYV  E+KVLITGRFL +++EAE+CKWSCMFGE+EV AE++A GVL C T   K G 
Sbjct: 266  PNWAYVGLEIKVLITGRFLKNREEAEDCKWSCMFGEVEVQAEVIADGVLCCQTPLNKAGM 325

Query: 575  VPFYVTCSNRLSCSEVREFEYRASHIPDVDVADN-CGDITSENLRMQFGKLLCLTSVSTP 633
            VPFYVTCS+R++CSEVREFEYR SHI DVD+ D+     +S +L  +FGKLL  +SV  P
Sbjct: 326  VPFYVTCSDRVACSEVREFEYRLSHIQDVDINDDYSSSASSVDLHTRFGKLLSPSSVHLP 385

Query: 634  NYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQV 693
             Y+ S +  ISQL++ +SS LK++ D+WD MLKLT+E   S E VKE+ +QKLLK++L  
Sbjct: 386  EYNTSKIDRISQLSNTVSSFLKEDTDEWDHMLKLTSEVGVSLETVKEEFLQKLLKDRLHF 445

Query: 694  WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWA 753
            WL+QKAAEGGKGP +LD  GQGVLHFAAALGYDWALEPT +AGV++NFRD NGWTALHWA
Sbjct: 446  WLLQKAAEGGKGPSILDEGGQGVLHFAAALGYDWALEPTIIAGVSVNFRDANGWTALHWA 505

Query: 754  AYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSAL 813
            A CGRERTVASL+ LGAAPGAL+DPTPKYP+GRTPADLAS+ GHKGIAGYLAES LS+ L
Sbjct: 506  ASCGRERTVASLVLLGAAPGALTDPTPKYPAGRTPADLASANGHKGIAGYLAESALSAHL 565

Query: 814  SAISLNKKDGDVAEVTGATAVQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNATQAAARI 873
            S+++L+ +D D AE++G    Q VP+   T +S+ DLPYG S+KDSLAAV NATQAAARI
Sbjct: 566  SSLNLDNQDSDNAEISGPRGGQLVPEHI-TSISNKDLPYGQSLKDSLAAVCNATQAAARI 624

Query: 874  HQVFRVQSFQKKQLKEYGNDTFGISDERALSLVAVKTQKPGHHDEPVHAAATRIQNKFRS 933
            HQVFRVQSFQKKQLKE+G+D FGIS E ALSL+AVK  K G +DEPVHAAA RIQNKFRS
Sbjct: 625  HQVFRVQSFQKKQLKEFGDDKFGISHEHALSLIAVKANKQGQNDEPVHAAAIRIQNKFRS 684

Query: 934  WKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSE 993
            WKGRK+FLIIR++I+KIQA+VRGHQVRKNY+KI+WSVGI+EK+ILRWRR+ SGLRGFKSE
Sbjct: 685  WKGRKEFLIIRQRIVKIQAHVRGHQVRKNYRKIVWSVGIVEKVILRWRRKRSGLRGFKSE 744

Query: 994  TLTASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRLLNVVN 1053
             LT   S   T +KE+D DF KEGRKQ E R Q ALARVKSM Q  EARDQY RLLNVV 
Sbjct: 745  ALTEGPSKKDTISKEEDDDFFKEGRKQTEARSQIALARVKSMHQNREARDQYCRLLNVVT 804

Query: 1054 EIQETKAM--ALSNAEETADFDDDLVDIEALL-DDTLMPNAS 1092
            EIQETK +   ++N+E  A+  +DL+D EALL +DT M  AS
Sbjct: 805  EIQETKVVHSHINNSEAMAEI-NDLIDFEALLNEDTFMDTAS 845

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GSA7	CMTA3_ARATH	No assigned EC number	0.5341	0.9120	0.9651	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1092
pfam03859	119	pfam03859, CG-1, CG-1 domain	8e-69
smart01076	118	smart01076, CG-1, CG-1 domains are highly conserve	2e-59
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
pfam00612	21	pfam00612, IQ, IQ calmodulin-binding motif	2e-04
smart00015	23	smart00015, IQ, Calmodulin-binding motif	4e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.004

>gnl|CDD|217766 pfam03859, CG-1, CG-1 domain

 Score =  225 bits (575), Expect = 8e-69
 Identities = 80/119 (67%), Positives = 97/119 (81%)

Query: 18  ILIEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLFDRKVLRYFRKDGHNWRK 77
           +L EA+ RWLRP EI  IL+N+ K  I  E P  PPSGSLFL++RKV+RYFRKDG+NW+K
Sbjct: 1   LLPEAKSRWLRPEEIYAILQNFEKHFITLEPPTRPPSGSLFLYNRKVVRYFRKDGYNWKK 60

Query: 78  KKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWMLEEELSHIVLVHYREVK 136
           KKDGKT +EAHE+LK G V+VL+CYYAHGE+N  FQRR YW+L+E+L HIVLVHY  VK
Sbjct: 61  KKDGKTTREAHEKLKVGGVEVLNCYYAHGEDNPTFQRRCYWLLDEDLEHIVLVHYLNVK 119

CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin -binding domain and ankyrins (ANK) motifs. Length = 119

>gnl|CDD|198144 smart01076, CG-1, CG-1 domains are highly conserved domains of about 130 amino-acid residues

 Score =  198 bits (506), Expect = 2e-59
 Identities = 69/118 (58%), Positives = 82/118 (69%), Gaps = 4/118 (3%)

Query: 21  EAQHRWLRPAEICEILRNYTKF--RIAPESPHTPPSGSLFLFDRKVLRYFRKDGHNWRKK 78
           EA+HRWL P EI  IL N+ K    +    P  P SGSLFLF+RK L+YFRKDG+NW+KK
Sbjct: 3   EAKHRWLTPEEIAAILINFDKHTEWLTTSPPTRPKSGSLFLFNRKKLKYFRKDGYNWKKK 62

Query: 79  KDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSYWMLEEELSHIVLVHYREVK 136
           KDGKTV+E HE+LK G ++ LHCYYAH E N  F RR YW+L  +   IVLVHY  V 
Sbjct: 63  KDGKTVREDHEKLKVGGIECLHCYYAHSEINPTFHRRCYWLL--QNPDIVLVHYLNVP 118

The domains contain a predicted bipartite NLS and are named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin -binding domain and ankyrins (ANK) motifs. Length = 118

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 36/108 (33%), Positives = 45/108 (41%), Gaps = 14/108 (12%)

Query: 701 EGGKGPCVLDHCGQGVLHFAAALGY----DWALEPTTVAGVNINFRDVNGWTALHWAAYC 756
           E G      D+ G+  LH AA  G+       LE     G ++N RD +G T LH AA  
Sbjct: 28  ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE----KGADVNARDKDGNTPLHLAARN 83

Query: 757 GRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           G    V  L+  GA   A          GRTP  LA+  GH  +   L
Sbjct: 84  GNLDVVKLLLKHGADVNARDK------DGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 14/99 (14%)

Query: 710 DHCGQGVLHFAAALGY----DWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASL 765
           D  G+  LH AA+ G+       LE     G ++N +D +G T LH AA  G    V  L
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLE----NGADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 766 IALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           +  GA      D   +   G TP  LA+  G+  +   L
Sbjct: 60  LEKGA------DVNARDKDGNTPLHLAARNGNLDVVKLL 92

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 717 LHFAAALGY----DWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGA 770
           LH AA  G        LE     G ++N +D +G TALH AA  G    V  L+  GA
Sbjct: 32  LHLAARNGNLEIVKLLLE----HGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 55.8 bits (135), Expect = 8e-08
 Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 8/92 (8%)

Query: 703 GKGPCVLDHCGQGVLHFAAALGYDWA--LEPTTVAGVNINFRDVNGWTALHWAAYCGRER 760
           G  P   D  G   LH  A         + P  +AG++IN R+  G T LH+AA     R
Sbjct: 212 GCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPR 271

Query: 761 TVASLIALGAAPGALSDPTPKYPSGRTPADLA 792
               LIALGA   A+S        G TP  L 
Sbjct: 272 ACRRLIALGADINAVS------SDGNTPLSLM 297

Length = 471

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 740 NFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKG 799
           N RD +G T LH AA  G    V  L+  GA      D   K   GRTP  LA+  GH  
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGA------DVNAKDNDGRTPLHLAAKNGHLE 54

Query: 800 IAGYL 804
           I   L
Sbjct: 55  IVKLL 59

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 16/94 (17%)

Query: 717 LHFAAALGY----DWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP 772
           LH AA  G        LE     G ++N    +  TALH AA  G    V  L+  GA  
Sbjct: 1   LHLAAKNGNLELVKLLLE----KGADVNLG--DTDTALHLAARNGNLEIVKLLLEHGA-- 52

Query: 773 GALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE 806
               D   K   G T   LA+  G+  I   L E
Sbjct: 53  ----DVNAKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 33/120 (27%), Positives = 40/120 (33%), Gaps = 14/120 (11%)

Query: 703 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVA--------GVNINFRDVNGWTALHWAA 754
           G      D  G   LH AA  G                       N RD +G T LHWAA
Sbjct: 96  GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA 155

Query: 755 YCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALS 814
             G    V  L+  GA      DP  +   G T  D A+  G   +   L +  L  +L 
Sbjct: 156 LNGDADIVELLLEAGA------DPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLL 209

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 746 GWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           G TALH AA  GR   V  L+  G       +       G T   +A+  G+  +   L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDE------DGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 8/55 (14%)

Query: 716 VLHFAAALGY----DWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLI 766
            LH AA  G      + LE     GV+IN  D +G TALH AA  G    +  L+
Sbjct: 4   ALHKAAISGRLELVKYLLE----KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGY----DWALEPTTVAGVNINFRDVNGWTA 749
            L++K A+        D  G   LH AA  G        L+     G ++N RD +G T 
Sbjct: 58  LLLEKGAD----VNARDKDGNTPLHLAARNGNLDVVKLLLK----HGADVNARDKDGRTP 109

Query: 750 LHWAAYCGRERTVASLI 766
           LH AA  G    V  L+
Sbjct: 110 LHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRE-----RTVAS 764
           D  G+  LH AA+ G D  ++    +G ++N +D +G T LH AA  G            
Sbjct: 70  DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKL 129

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAES 807
           L+  GA    L     +   G TP   A+  G   I   L E+
Sbjct: 130 LLEAGA---DLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA 169

Length = 235

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 14/33 (42%)

Query: 745 NGWTALHWAAYCGRERTVASLIALGAAPGALSD 777
           +G T LH AA  G    V  L+  GA   A   
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|201341 pfam00612, IQ, IQ calmodulin-binding motif

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 944 RKQIIKIQAYVRGHQVRKNYK 964
           RK  IKIQA  RG+  RK YK
Sbjct: 1   RKAAIKIQAAWRGYLARKRYK 21

Calmodulin-binding motif. Length = 21

>gnl|CDD|197470 smart00015, IQ, Calmodulin-binding motif

 Score = 38.1 bits (90), Expect = 4e-04
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 947 IIKIQAYVRGHQVRKNYK 964
            I IQA  RG+  RK YK
Sbjct: 6   AIIIQAAWRGYLARKRYK 23

Short calmodulin-binding motif containing conserved Ile and Gln residues. Length = 23

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 40.8 bits (96), Expect = 0.004
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 735 AGVNINFRDVNGWTALHWAAYCG----RERTVASLIALGAAPGALSDPTPKYPSGRTPAD 790
           AG ++N +D  G T LH   Y        + +  L+  GA   AL         G TP  
Sbjct: 106 AGADVNAKDKVGRTPLH--VYLSGFNINPKVIRLLLRKGADVNALDL------YGMTPLA 157

Length = 471

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1092
KOG0520	975	consensus Uncharacterized conserved protein, conta	100.0
PF03859	118	CG-1: CG-1 domain; InterPro: IPR005559 CG-1 domain	100.0
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA03095	471	ankyrin-like protein; Provisional	99.96
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.96
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA03100	480	ankyrin repeat protein; Provisional	99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PHA02876	682	ankyrin repeat protein; Provisional	99.95
PHA02874	434	ankyrin repeat protein; Provisional	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.95
KOG0510	929	consensus Ankyrin repeat protein [General function	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.94
PHA02878	477	ankyrin repeat protein; Provisional	99.94
PHA02791	284	ankyrin-like protein; Provisional	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PHA02875	413	ankyrin repeat protein; Provisional	99.93
KOG0510	929	consensus Ankyrin repeat protein [General function	99.93
PHA02798	489	ankyrin-like protein; Provisional	99.93
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.93
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.92
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.92
PHA02917	661	ankyrin-like protein; Provisional	99.92
PHA02859	209	ankyrin repeat protein; Provisional	99.91
PHA02917	661	ankyrin-like protein; Provisional	99.91
PHA02730	672	ankyrin-like protein; Provisional	99.9
PHA02792	631	ankyrin-like protein; Provisional	99.9
KOG0508	615	consensus Ankyrin repeat protein [General function	99.89
PHA02795	437	ankyrin-like protein; Provisional	99.89
PHA02859	209	ankyrin repeat protein; Provisional	99.87
PHA02792	631	ankyrin-like protein; Provisional	99.84
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.84
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.84
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.83
KOG0514	452	consensus Ankyrin repeat protein [General function	99.81
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.81
PHA02795	437	ankyrin-like protein; Provisional	99.8
KOG0508	615	consensus Ankyrin repeat protein [General function	99.79
PHA02743	166	Viral ankyrin protein; Provisional	99.78
PHA02743	166	Viral ankyrin protein; Provisional	99.74
PHA02741	169	hypothetical protein; Provisional	99.74
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.74
PHA02736	154	Viral ankyrin protein; Provisional	99.72
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.72
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.72
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.72
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.71
PHA02884	300	ankyrin repeat protein; Provisional	99.71
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.71
PHA02736	154	Viral ankyrin protein; Provisional	99.7
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.7
PHA02884	300	ankyrin repeat protein; Provisional	99.7
KOG0514	452	consensus Ankyrin repeat protein [General function	99.69
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.68
PHA02741	169	hypothetical protein; Provisional	99.66
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.64
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.61
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.55
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.51
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.5
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.46
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.45
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.43
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.4
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.36
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.34
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.33
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.3
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.28
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.27
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.26
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.25
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.25
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.23
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.22
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.2
KOG0520	975	consensus Uncharacterized conserved protein, conta	99.11
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.1
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.99
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.69
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.65
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.58
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	98.53
PF13606	30	Ank_3: Ankyrin repeat	98.5
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.42
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.37
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.34
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.3
PF13606	30	Ank_3: Ankyrin repeat	98.22
KOG0522	560	consensus Ankyrin repeat protein [General function	98.21
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.2
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.2
KOG2384	223	consensus Major histocompatibility complex protein	98.1
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.1
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.09
KOG0522	560	consensus Ankyrin repeat protein [General function	98.09
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.03
KOG2384	223	consensus Major histocompatibility complex protein	97.75
KOG0511	516	consensus Ankyrin repeat protein [General function	97.75
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	97.72
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.68
KOG0164	1001	consensus Myosin class I heavy chain [Cytoskeleton	97.63
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	97.47
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	97.4
KOG0511	516	consensus Ankyrin repeat protein [General function	97.28
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.12
COG5022	1463	Myosin heavy chain [Cytoskeleton]	97.09
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	96.66
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	96.57
PTZ00014	821	myosin-A; Provisional	96.57
KOG0164	1001	consensus Myosin class I heavy chain [Cytoskeleton	96.35
smart00015	26	IQ Short calmodulin-binding motif containing conse	96.26
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.23
KOG2505	591	consensus Ankyrin repeat protein [General function	96.15
KOG2505	591	consensus Ankyrin repeat protein [General function	95.54
PTZ00014	821	myosin-A; Provisional	95.53
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.39
smart00015	26	IQ Short calmodulin-binding motif containing conse	94.73
KOG2128	1401	consensus Ras GTPase-activating protein family - I	94.22
COG5022	1463	Myosin heavy chain [Cytoskeleton]	93.2
cd01175	85	IPT_COE IPT domain of the COE family (Col/Olf-1/EB	92.82
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	84.12
KOG0162	1106	consensus Myosin class I heavy chain [Cytoskeleton	80.23

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=100.00  E-value=8.9e-129  Score=1164.01  Aligned_cols=932  Identities=43%  Similarity=0.660  Sum_probs=660.4

Q ss_pred             CCCCChhcHHHHHHHHHHhcCChHHHHHHHHccccceeCcCCCCCCCCCceeeeehhhhhhhcccCccceecCCCcchHH
Q 001365            7 FALGNQLDIEQILIEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKE   86 (1092)
Q Consensus         7 ~~~~~~~d~~~~~~~~~~rw~~~~e~~~~l~~~~~~~~~~~~~~~p~~g~~~l~~r~~~~~fr~dg~~w~k~~~g~~~~e   86 (1092)
                      |.....||+..|++|++.|||+|+||+.||+||++|.|+.+||+||.|||+||||||+|||||||||+|||||||||+||
T Consensus        17 ~~sl~~l~~~~ll~~~~~rWl~~~EI~~il~n~~~~~lt~~s~trp~sGS~flfnRk~lr~fRKDGh~WkKkkDGKtirE   96 (975)
T KOG0520|consen   17 FKSLQDLDIQTLLPEAKSRWLTPEEILAILINHEKFTLTVSSPTRPQSGSIFLFNRKVLRYFRKDGHNWKKKKDGKTIRE   96 (975)
T ss_pred             hhhhhhhhhhhhhHHHHhccCChHHHHHHHhcccccccccCCCCCCCCCceeeeccHHHHHHhhcchhhhhcCCCCcChH
Confidence            33446799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhccCCeeeEEEeeccccccccccceeeeccccccccEEEEeeeeccCCccccccccccCCCCCCCCCCccCCCCCC
Q 001365           87 AHERLKAGSVDVLHCYYAHGEENENFQRRSYWMLEEELSHIVLVHYREVKGNRTNFNRAKVAEGATPYSQENEETIPNSE  166 (1092)
Q Consensus        87 ~h~~lk~~~~~~~~~~y~~~~~~~~f~rr~y~~~~~~~~~ivlvhy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (1092)
                      |||||||||+|+||||||||+++|||||||||||++.++||||||||||++.+.. ..+..+..                
T Consensus        97 aHe~LKvg~~~~l~~~Y~Hg~~~ptF~RRcYwllq~~~~hIVLVHYl~v~~~~~~-~~~~~~~~----------------  159 (975)
T KOG0520|consen   97 AHEKLKVGGVEVLHCYYAHGEINPTFQRRCYWLLQQELEHIVLVHYLNVKGNEDA-AKGAGEIF----------------  159 (975)
T ss_pred             HHHhhccCCccceeeeeecccccchHHHHHHHhhccccCceEEEEEeeccccccc-ccCccccc----------------
Confidence            9999999999999999999999999999999999999999999999999987731 11111110                


Q ss_pred             ccCCCCCCCCCCC-CCCCCccccCCcCcc-cccchhhhhccccCCCCcccccc------ccccchhhhhcccCCCCCCCC
Q 001365          167 VEGSQSSGFHPNS-YQMPSQTADTSLNSA-QASEYEDAESVYNNQASSRFHSF------LDLQQPVAEKIDAGLADPYYP  238 (1092)
Q Consensus       167 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  238 (1092)
                       .+++++.-  ++ ++...|   .+|.-. +.+..++++++++.+....+-..      ..-+++.++..        . 
T Consensus       160 -~s~~sd~~--~S~~~~~~q---~~~~~~~~~s~~~~v~~i~s~~~~~~~g~~~~~s~~h~i~~~~~~s~--------~-  224 (975)
T KOG0520|consen  160 -SSIISDKA--WSLNQLAGQ---LSPIFHNHSSVNEDVAEINSNQTGNALGSVFGNSRNHRIRLHEVNSL--------D-  224 (975)
T ss_pred             -cccccccc--ccHHHhhcc---cCcchhcccchHHHHHHHhhhccccccccccCcchhhhhcccccCCc--------c-
Confidence             11222211  00 011110   112111 33555666665433222222111      00111111100        0 


Q ss_pred             CCcccCccCccccCCCCCCc---CCcCccCCCCCCCCCCcCCCCCCCCCCChHHHhhhcCCCCCCCCCccCCCCCCCCcc
Q 001365          239 SSLTNNYQGKFSVVPGADFI---SPAQTDKSRNSNDTGLTYEPQKNLDFPSWEDVLQNCSQGVGSQPEALGDIPNQGYDI  315 (1092)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (1092)
                           .+.......+.....   +..++...   ....     ..+.+...|.+.++++....-....++...       
T Consensus       225 -----~~~~~p~s~~s~~~~~~~~~~~~~~~---~~~~-----~rs~~~s~~te~l~n~~~~~~~~g~s~s~~-------  284 (975)
T KOG0520|consen  225 -----PLYKLPVSDDSLNLSAPKPIDLPKGP---TSVK-----QRSSSPSYFTEILGNAPSGLVSQGNSLSSS-------  284 (975)
T ss_pred             -----ccccccccCCccccccCCCcccccCC---cchh-----hcCCCCcchhhhcccCCCcccccccccccc-------
Confidence                 011111111000000   00000000   0000     011233456776666652111111110000       


Q ss_pred             CCCCccCCccccccccCcccccccccccccCCcCCCCCCcccccccccccccccccccccccccCccCCCCCCCCCCCCC
Q 001365          316 LGEPFTNSFGERKEFGSHLQTRGEWQASRNDSSHLSNWPMDQKVYLDSAHDLTSQSCEQGAAHDGLLDSLRPPHAHPNME  395 (1092)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (1092)
                              +  +        .-..|+.        +          +.+.       .+..+    ..+|+|....+.  
T Consensus       285 --------l--~--------~i~~~~~--------~----------~~~~-------~~~p~----~~nf~~~ss~~s--  315 (975)
T KOG0520|consen  285 --------L--Q--------RISSFTG--------L----------DNAA-------YEQPN----SQNFEPNSSLNS--  315 (975)
T ss_pred             --------h--h--------hcccccc--------c----------cccc-------ccCCc----cccccccccCCC--
Confidence                    0  0        0001110        0          0000       00000    001100000000  


Q ss_pred             CcccccCCccccccCCCCCCCcccccccccccchhhhccccc--ccccccccccchhhHHhhhcCccccccccCCCCccc
Q 001365          396 NDVHEQLPNAEHGHLLKSDPESSLTIDGKSFYSSAIKQHLID--GSTEGLKKLDSFNRWMSKELGDVKESNMQSSSGAYW  473 (1092)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~dsf~rw~~~~~~~~~~~~~~~s~~~~~  473 (1092)
                       ....    ...+.+  .....+...+-.-|.     ....+  ...+||++.|||+|||+ .|++..|+.-.++-+.+|
T Consensus       316 -~~~~----~~~g~g--~~~~~~sa~~~~~P~-----~~~~~~~~~~~~l~sgdsf~~~~~-t~~e~~d~~q~~s~~~~~  382 (975)
T KOG0520|consen  316 -HVTG----QSYGQG--LQARSPSATSESRPI-----TSAADAALSELGLKSGDSFSRWAS-TFGEISDLGQDPSGEAVW  382 (975)
T ss_pred             -Cccc----cccCcc--ccCCCcccccccCCc-----chhhccccccccccccccccchhh-hhcccccCCCCCcccccc
Confidence             0000    000001  011111111122231     11122  12789999999999996 898888777334445678


Q ss_pred             ccccccCCCCCCCCCcccccccccCCCccccCCceEEEeeccccccCCCCeeEEEEecCcCCcccChHHHHHHHcCCcHH
Q 001365          474 ETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEV  553 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~l~~~~~~~s~s~~q~fsI~dfSP~wa~s~~~tKVlI~G~fl~~~~~~TpLH~A~~fG~veV  553 (1092)
                      .+..  +.+.+.+         ..+++| +++|+|+|+||||+|+|.++++||+|+|.+    ...+.-+|.|+||..+|
T Consensus       383 ~p~~--~~~~~~~---------s~~~~S-~p~qlf~I~DfSP~Wsy~~ggvKVlV~G~~----~~~~~~~ysc~Fg~~~V  446 (975)
T KOG0520|consen  383 TPEN--DPMGPPG---------SFLSPS-SPEQLFTITDFSPEWSYLDGGVKVLVTGFP----QDETRSNYSCMFGEQRV  446 (975)
T ss_pred             ccCC--CcCCCcc---------cccCCC-CCcceeeeeccCcccccCCCCcEEEEecCc----cccCCCceEEEeCCccc
Confidence            7653  2222221         136677 449999999999999999999999999962    22335679999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCchHHHHHHH-cCCCchhHHHHHHHHhCCCCcccccCCCCcHHhhhHHHHHHHHhcCCCCC
Q 001365          554 PAEIVAGGVLRCHTSSQKVGRVPFYVTCS-NRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRMQFGKLLCLTSVST  632 (1092)
Q Consensus       554 v~~LL~~Gadin~~~~d~~G~TPLHlAa~-ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~~~~~lvkLLl~gadv~  632 (1092)
                      ++.||+.||.+|++|++.+|.++|++||. ++..|+++.+|+|+......+|..+.+..+--+....++..++..+..+.
T Consensus       447 PAeliq~GVLrC~~P~h~~G~V~l~V~c~~~~~~~se~ref~~~~~~~~~~d~~s~~d~~~~~sl~~rl~~~~~r~~~~~  526 (975)
T KOG0520|consen  447 PAELIQEGVLRCYAPPHEPGVVNLQVTCRISGLACSEVREFAYLVQPSQQIDKLSWEDFLFQMSLLHRLETMLNRKQSIL  526 (975)
T ss_pred             cHHHhhcceeeeecCccCCCeEEEEEEecccceeeeeehheeecccCcccccccccccchhhhHHHHHHHHHHHHhHhHh
Confidence            99999999999999999999999999999 78889999999999998888888874444444545555555554322221


Q ss_pred             C-CCCCCCchhhHH--HHHHHhhhhccCCCcchH-HHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhC-CCCCC
Q 001365          633 P-NYDPSNLSDISQ--LNSKISSLLKDENDDWDL-MLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEG-GKGPC  707 (1092)
Q Consensus       633 ~-~~~~~~~~~~~~--ll~~I~~Ll~~d~~g~t~-L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~-GadvN  707 (1092)
                      . ............  +..++..+    .+.|.. ++.....+.....+.++.+|..++++.++.||++.+++. |...+
T Consensus       527 ~s~~~~~n~~~~~~~~l~skv~~l----~~~~~~r~~~~~~~~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~  602 (975)
T KOG0520|consen  527 SSKPSTENTSDAESGNLASKVVHL----LNEWAYRLLKSISENLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDL  602 (975)
T ss_pred             hccCCccccccccchhHHHHHHHH----HHHHHHHHHhhHhhhccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCch
Confidence            1 111222222223  66666666    466666 777777777777788899999999999999999999996 88888


Q ss_pred             cccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 001365          708 VLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRT  787 (1092)
Q Consensus       708 ~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~T  787 (1092)
                      ..|.+|...+|++|..|+.+.+.+.+..|..++++|..||||||||+..|+..+|..|++.|++.++++||+..+..|.|
T Consensus       603 eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~t  682 (975)
T KOG0520|consen  603 ELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKT  682 (975)
T ss_pred             hhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCcccCcccC-CCC-CcHHHHhhhhhccccccCCCCCCCCCCCCCcchhhHHHHHHH
Q 001365          788 PADLASSIGHKGIAGYLAESDLSSALSAISLNK-KDG-DVAEVTGATAVQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRN  865 (1092)
Q Consensus       788 PLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD-~~G-~ta~iaa~~~v~~l~~~~as~~s~~~~~~~~sLkdSL~Avrn  865 (1092)
                      +..+|..+|+.++..+|.++.+..+..++...+ +.| .++...+..   ...+.++.+.     ++..+|+|+|+|||+
T Consensus       683 a~~la~s~g~~gia~~lse~~L~~~~~~~~~~~~~~s~~~~~~~~~~---t~~e~s~~~~-----~~~~sl~Dtl~avrd  754 (975)
T KOG0520|consen  683 AADLARANGHKGIAGYLSEKALSAHLSNLELADPNLSADSEEDKAEK---TSSEGSPNPD-----EDSDSLKDTLAAVRD  754 (975)
T ss_pred             hhhhhhcccccchHHHHhhhHHHHHHhhccccccccCCCchhhhhhh---ccCCCCCCCC-----ccccccccccccccc
Confidence            999999999999999999999888888888777 443 333332222   2233333333     455569999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHhhhcCCCC-CCchHHHhHHHHHHhcCCC--CCchhHHHHHHHHHHHhhhHHHHHHHHH
Q 001365          866 ATQAAARIHQVFRVQSFQKKQLKEYGNDTF-GISDERALSLVAVKTQKPG--HHDEPVHAAATRIQNKFRSWKGRKDFLI  942 (1092)
Q Consensus       866 A~qAAarIQqafR~~S~rrkq~~~~~~d~~-~~~~e~a~sl~a~k~~~~~--r~~~~l~~AA~~IQ~~~Rg~~~Rk~fl~  942 (1092)
                      |+++|++||++||+.+|+++++.+..++.. .+.++.+.   +++...++  ...+....||..||++||||+.|++|+.
T Consensus       755 Aa~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~---~m~~~~a~~~~~~r~~~~aa~~iq~~f~~yk~r~~~l~  831 (975)
T KOG0520|consen  755 AAQAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAV---SMKASSAFSMCDDRSDPAAASRIQKKFRGYKQRKEFLS  831 (975)
T ss_pred             hHHHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhh---hhhcccchhcCccccchhHHHHhhhhhhhHHhhhhhcc
Confidence            999999999999999999999988776422 33333333   44444433  3355678899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccCCccchHHHHHHHHHHHH
Q 001365          943 IRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETLTASSSMVATSAKEDDYDFLKEGRKQKE 1022 (1092)
Q Consensus       943 ~r~~av~IQa~~Rg~~aRk~y~~~~~a~~~iqk~irr~r~kr~glrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~rkq~~ 1022 (1092)
                      +|+.+|+||+++|||+.||+|+++.|++++++|.|.|||++++|+|||+.+...+..+. +-...++.|||+|++|||.|
T Consensus       832 tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~-a~t~~e~~yd~yKq~~~~~~  910 (975)
T KOG0520|consen  832 TRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQET-AATVIEDCYDFYKQLRKQTE  910 (975)
T ss_pred             cCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcccc-ccchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999986543221 23355899999999999999


Q ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCchhhhHHhhcCC-CC
Q 001365         1023 ERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQETKAMALSNAEETADFDDDLVDIEALLDDT-LM 1088 (1092)
Q Consensus      1023 ~~~~~A~~~vQs~~R~~~AR~~yrrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~ 1088 (1092)
                      .|+.+|+++||+|+|+++||+|||||+.++.++++.+    ..+.-...+.+.++||+.|+.|+ +|
T Consensus       911 ~r~~~A~~~VQsm~rs~~a~qqyrR~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~  973 (975)
T KOG0520|consen  911 ERLTRAVVRVQSMFRSPKAQQQYRRLLLVYEQYQESY----KEEALVGLLDDSLFDIEQLQADRKIM  973 (975)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhh----hhhccccccccchhhhHhhhhhhhhh
Confidence            9999999999999999999999999999999988876    12222234567899999999777 55

>PF03859 CG-1: CG-1 domain; InterPro: IPR005559 CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein []

Probab=100.00  E-value=5.1e-61  Score=453.05  Aligned_cols=117  Identities=67%  Similarity=1.210  Sum_probs=114.6

Q ss_pred             HHHHHHhcCChHHHHHHHHccccceeCcCCCCCCCCCceeeeehhhhhhhcccCccceecCCCcchHHHhhhhccCCeee
Q 001365           19 LIEAQHRWLRPAEICEILRNYTKFRIAPESPHTPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDV   98 (1092)
Q Consensus        19 ~~~~~~rw~~~~e~~~~l~~~~~~~~~~~~~~~p~~g~~~l~~r~~~~~fr~dg~~w~k~~~g~~~~e~h~~lk~~~~~~   98 (1092)
                      ++| ++|||+|+||++||+||++|++..+||+||+|||+|||||+++||||||||+|||||||||||||||||||||+|+
T Consensus         2 ~~~-~~rWl~~~Ei~~IL~n~~~~~~~~~~~~rP~sGslfLf~Rk~~r~fRkDG~~WrKkkdgktvRE~HekLKv~~~e~   80 (118)
T PF03859_consen    2 LKE-KTRWLKPEEIAFILLNYEKFQIWLEPPNRPPSGSLFLFNRKVVRFFRKDGHNWRKKKDGKTVREDHEKLKVGGVEV   80 (118)
T ss_pred             chH-hcccCCHHHHHHHHHhHHhCCcccCCCCCCCCceEEEEEchHhhhhhcccceeEEcCCCCchhhhhhhhccCceee
Confidence            445 9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeccccccccccceeeeccccccccEEEEeeeecc
Q 001365           99 LHCYYAHGEENENFQRRSYWMLEEELSHIVLVHYREVK  136 (1092)
Q Consensus        99 ~~~~y~~~~~~~~f~rr~y~~~~~~~~~ivlvhy~~~~  136 (1092)
                      ||||||||+++||||||||||||++||||||||||||+
T Consensus        81 l~~~Yah~~~~~~F~RR~Ywll~~~~~~iVLVHY~~v~  118 (118)
T PF03859_consen   81 LNCYYAHSEDNPTFHRRCYWLLDPPYEHIVLVHYLDVK  118 (118)
T ss_pred             eEEEEEeeccCCCeeeEEEEccCCCCceEEEEEeeecC
Confidence            99999999999999999999999999999999999985

CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin-binding domain and ankyrins [].; GO: 0005516 calmodulin binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.7e-29  Score=299.06  Aligned_cols=239  Identities=15%  Similarity=0.112  Sum_probs=189.8

Q ss_pred             CcccChHHHHHHHcC---CcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCC
Q 001365          535 SQQEAENCKWSCMFG---EIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGD  611 (1092)
Q Consensus       535 ~~~~~TpLH~A~~fG---~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~  611 (1092)
                      +..+.||||+|+..|   +.++++.|++.|+++|  ..+..|.||||+|+.++.   ....+++|+..|+++|.+|..|.
T Consensus        44 ~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin--~~~~~g~TpLh~A~~~~~---~~~iv~lLl~~ga~in~~~~~g~  118 (471)
T PHA03095         44 GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVN--APERCGFTPLHLYLYNAT---TLDVIKLLIKAGADVNAKDKVGR  118 (471)
T ss_pred             CCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCC---cHHHHHHHHHcCCCCCCCCCCCC
Confidence            445789999999999   9999999999999988  556679999999999873   24445789999999999999999


Q ss_pred             cHHhhh------HHHHHHHH-hcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHH
Q 001365          612 ITSENL------RMQFGKLL-CLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQ  684 (1092)
Q Consensus       612 TpL~~~------~~~lvkLL-l~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~  684 (1092)
                      ||||..      +.+++++| ..|++++..+                      ..|.||||.++..+...          
T Consensus       119 tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d----------------------~~g~tpL~~a~~~~~~~----------  166 (471)
T PHA03095        119 TPLHVYLSGFNINPKVIRLLLRKGADVNALD----------------------LYGMTPLAVLLKSRNAN----------  166 (471)
T ss_pred             CHHHHHhhCCcCCHHHHHHHHHcCCCCCccC----------------------CCCCCHHHHHHHcCCCC----------
Confidence            999952      45677766 4577765443                      46788888776654322          


Q ss_pred             HHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHc--CCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCH--H
Q 001365          685 KLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAAL--GYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRE--R  760 (1092)
Q Consensus       685 ~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~--G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~--e  760 (1092)
                              ..++++|+++|++++..|..|.||||+|+..  ++..+++.|+++|++++.+|..|+||||+||..|+.  .
T Consensus       167 --------~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~  238 (471)
T PHA03095        167 --------VELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRS  238 (471)
T ss_pred             --------HHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHH
Confidence                    1167778888888888888888888888865  677888888888888888888888888888888864  5


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHH
Q 001365          761 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVT  829 (1092)
Q Consensus       761 iV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~ia  829 (1092)
                      ++..|++.|+++|.      +|..|+||||+|+..|+.+++++|+++|     ++++++|..|.||...
T Consensus       239 ~v~~ll~~g~din~------~d~~g~TpLh~A~~~~~~~~v~~LL~~g-----ad~n~~~~~g~tpl~~  296 (471)
T PHA03095        239 LVLPLLIAGISINA------RNRYGQTPLHYAAVFNNPRACRRLIALG-----ADINAVSSDGNTPLSL  296 (471)
T ss_pred             HHHHHHHcCCCCCC------cCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCcccCCCCCCHHHH
Confidence            77888888888777      6678888888888888888888888887     6788888888666433

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=1.2e-29  Score=299.79  Aligned_cols=230  Identities=11%  Similarity=0.044  Sum_probs=182.5

Q ss_pred             CCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCccc-ccCCCCc
Q 001365          534 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDV-ADNCGDI  612 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna-~D~~G~T  612 (1092)
                      .+..+.||||+||..|+.++++.||++|++++  ..|..|+||||+|+.++.  ..+..+++|+..|+++|. .|..|.|
T Consensus        68 ~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin--~~d~~g~TpLh~A~~~~~--~~~e~v~lLl~~Gadin~~~d~~g~t  143 (446)
T PHA02946         68 TDDDGNYPLHIASKINNNRIVAMLLTHGADPN--ACDKQHKTPLYYLSGTDD--EVIERINLLVQYGAKINNSVDEEGCG  143 (446)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC--CCCCCCCCHHHHHHHcCC--chHHHHHHHHHcCCCcccccCCCCCc
Confidence            45568899999999999999999999999987  667779999999987753  335556789999999995 5889999


Q ss_pred             HHhh---hHHHHHHHHh-cCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHH
Q 001365          613 TSEN---LRMQFGKLLC-LTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLK  688 (1092)
Q Consensus       613 pL~~---~~~~lvkLLl-~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k  688 (1092)
                      |||.   ++.+++++|+ .|++++..                      +..|++|||.++..+....             
T Consensus       144 pL~aa~~~~~~vv~~Ll~~gad~~~~----------------------d~~G~t~Lh~A~~~~~~~~-------------  188 (446)
T PHA02946        144 PLLACTDPSERVFKKIMSIGFEARIV----------------------DKFGKNHIHRHLMSDNPKA-------------  188 (446)
T ss_pred             HHHHHHCCChHHHHHHHhcccccccc----------------------CCCCCCHHHHHHHhcCCCH-------------
Confidence            9984   4556666664 46666443                      3578999998776444321             


Q ss_pred             hhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcC--CHhHHHHHHHCCCCccccCCCCccHHHHHHHcCC-HHHHHHH
Q 001365          689 EKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALG--YDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR-ERTVASL  765 (1092)
Q Consensus       689 ~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G--~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~-~eiV~~L  765 (1092)
                           .++++|+++|+++|.+|..|.||||+|+..|  +.+++++|+. |+++|.+|..|+||||+|+..++ .+++++|
T Consensus       189 -----~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~L  262 (446)
T PHA02946        189 -----STISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKL  262 (446)
T ss_pred             -----HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHH
Confidence                 1667889999999999999999999999986  7889999885 89999999999999999999988 5899999


Q ss_pred             HHcCCCCCCCC--------------CCCCCC-CCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          766 IALGAAPGALS--------------DPTPKY-PSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       766 Le~GAdin~~~--------------D~n~~D-~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      +++|++++..+              .++..+ ..|.||||+|+.+|+.++|++|+++|
T Consensus       263 l~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~  320 (446)
T PHA02946        263 LSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDND  320 (446)
T ss_pred             HhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            99987653211              011122 35789999999999999999999977

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.2e-29  Score=294.08  Aligned_cols=223  Identities=15%  Similarity=0.068  Sum_probs=193.8

Q ss_pred             ChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh--
Q 001365          539 AENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN--  616 (1092)
Q Consensus       539 ~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~--  616 (1092)
                      .++||.||.+|+.+++++|++.|++++  ..+..|.||||+|+..|+    +..+++|++.|++++..+..+.||||.  
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n--~~~~~g~tpL~~A~~~~~----~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~   76 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPN--FEIYDGISPIKLAMKFRD----SEAIKLLMKHGAIPDVKYPDIESELHDAV   76 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCC--ccCCCCCCHHHHHHHcCC----HHHHHHHHhCCCCccccCCCcccHHHHHH
Confidence            579999999999999999999999987  445569999999999875    445578999999999999999999995  


Q ss_pred             --hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHH
Q 001365          617 --LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQV  693 (1092)
Q Consensus       617 --~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~  693 (1092)
                        ++.+++++|+. ++......                     +..|.||||.|+..+...                   
T Consensus        77 ~~g~~~~v~~Ll~~~~~~~~~~---------------------~~~g~tpL~~A~~~~~~~-------------------  116 (413)
T PHA02875         77 EEGDVKAVEELLDLGKFADDVF---------------------YKDGMTPLHLATILKKLD-------------------  116 (413)
T ss_pred             HCCCHHHHHHHHHcCCcccccc---------------------cCCCCCHHHHHHHhCCHH-------------------
Confidence              67777777754 44432211                     256899999998866543                   


Q ss_pred             HHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCC
Q 001365          694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPG  773 (1092)
Q Consensus       694 ~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin  773 (1092)
                       ++++|+++|++++..+..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++
T Consensus       117 -iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n  195 (413)
T PHA02875        117 -IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID  195 (413)
T ss_pred             -HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence             7889999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCC-CCHHHHHHHcCcHHHHHHHHHcCCCCCcccCccc
Q 001365          774 ALSDPTPKYPSG-RTPADLASSIGHKGIAGYLAESDLSSALSAISLN  819 (1092)
Q Consensus       774 ~~~D~n~~D~~G-~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlk  819 (1092)
                      .      .+..| .||+|+|+..|+.+++++|+++|     +++++.
T Consensus       196 ~------~~~~~~~t~l~~A~~~~~~~iv~~Ll~~g-----ad~n~~  231 (413)
T PHA02875        196 Y------FGKNGCVAALCYAIENNKIDIVRLFIKRG-----ADCNIM  231 (413)
T ss_pred             c------CCCCCCchHHHHHHHcCCHHHHHHHHHCC-----cCcchH
Confidence            8      44565 58999999999999999999999     556654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.4e-29  Score=297.41  Aligned_cols=237  Identities=19%  Similarity=0.116  Sum_probs=206.7

Q ss_pred             cccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHH-----HHHcCCCchhHHHHHHHHhCCCCcccccCCC
Q 001365          536 QQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYV-----TCSNRLSCSEVREFEYRASHIPDVDVADNCG  610 (1092)
Q Consensus       536 ~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHl-----Aa~ng~~~seVv~fe~Ll~~Gadvna~D~~G  610 (1092)
                      ..+.||||+|+..|+.++++.|++.|++++  ..+..|.||||+     |+..+.    +..+++|+..|++++..|..|
T Consensus        33 ~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~--~~~~~~~t~L~~~~~~~a~~~~~----~~iv~~Ll~~ga~i~~~d~~g  106 (480)
T PHA03100         33 KKPVLPLYLAKEARNIDVVKILLDNGADIN--SSTKNNSTPLHYLSNIKYNLTDV----KEIVKLLLEYGANVNAPDNNG  106 (480)
T ss_pred             cccchhhhhhhccCCHHHHHHHHHcCCCCC--CccccCcCHHHHHHHHHHHhhch----HHHHHHHHHCCCCCCCCCCCC
Confidence            456899999999999999999999999977  556669999999     998875    455578999999999999999


Q ss_pred             CcHHhh------hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHH
Q 001365          611 DITSEN------LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLV  683 (1092)
Q Consensus       611 ~TpL~~------~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL  683 (1092)
                      .||||.      ++.+++++|+. |++++..                      +..|.++||.|+..+...         
T Consensus       107 ~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~----------------------~~~g~t~L~~A~~~~~~~---------  155 (480)
T PHA03100        107 ITPLLYAISKKSNSYSIVEYLLDNGANVNIK----------------------NSDGENLLHLYLESNKID---------  155 (480)
T ss_pred             CchhhHHHhcccChHHHHHHHHHcCCCCCcc----------------------CCCCCcHHHHHHHcCCCh---------
Confidence            999995      34577777754 6665443                      257899999998766211         


Q ss_pred             HHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCC------ccHHHHHHHcC
Q 001365          684 QKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNG------WTALHWAAYCG  757 (1092)
Q Consensus       684 ~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G------~TpLH~Aa~~G  757 (1092)
                               .-++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+..|      .||||+|+..|
T Consensus       156 ---------~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~  226 (480)
T PHA03100        156 ---------LKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYN  226 (480)
T ss_pred             ---------HHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhC
Confidence                     117888999999999999999999999999999999999999999999999999      99999999999


Q ss_pred             C--HHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHH
Q 001365          758 R--ERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVT  829 (1092)
Q Consensus       758 ~--~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~ia  829 (1092)
                      +  .++|++|+++|+++|.      +|..|.||||+|+..|+.+++++|+++|     ++++.+|..|.||...
T Consensus       227 ~~~~~iv~~Ll~~g~din~------~d~~g~TpL~~A~~~~~~~iv~~Ll~~g-----ad~n~~d~~g~tpl~~  289 (480)
T PHA03100        227 EITLEVVNYLLSYGVPINI------KDVYGFTPLHYAVYNNNPEFVKYLLDLG-----ANPNLVNKYGDTPLHI  289 (480)
T ss_pred             cCcHHHHHHHHHcCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCCCCcHHHH
Confidence            9  9999999999999887      7799999999999999999999999999     6899999999776433

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=3.8e-29  Score=306.44  Aligned_cols=283  Identities=13%  Similarity=0.020  Sum_probs=206.3

Q ss_pred             CcccChHHHHHHH--cCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCc
Q 001365          535 SQQEAENCKWSCM--FGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDI  612 (1092)
Q Consensus       535 ~~~~~TpLH~A~~--fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~T  612 (1092)
                      +..+.||||+|+.  +|+.+++++|+++|++++  ..+..|.||||+||.+|+.+.++  +++|++.|+++|.+|..|.|
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN--~kD~~G~TPLH~Aa~~g~~~~eI--VklLLe~GADVN~kD~~G~T  249 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVN--LQNNHLITPLHTYLITGNVCASV--IKKIIELGGDMDMKCVNGMS  249 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCCCCHHH--HHHHHHcCCCCCCCCCCCCC
Confidence            4568899999864  578899999999999988  56777999999999998523344  57899999999999999999


Q ss_pred             HHhh-------hHHHHHHHHhcCCCCCCCCCCCCch---------hhHHHHHHHh----hhhccCCCcchHHHHhhhhcC
Q 001365          613 TSEN-------LRMQFGKLLCLTSVSTPNYDPSNLS---------DISQLNSKIS----SLLKDENDDWDLMLKLTAEEK  672 (1092)
Q Consensus       613 pL~~-------~~~~lvkLLl~gadv~~~~~~~~~~---------~~~~ll~~I~----~Ll~~d~~g~t~L~~a~~~~~  672 (1092)
                      |||.       ++.+++++|....+.+.........         ...+.+..+.    .+...+..|+||||.++..+.
T Consensus       250 PLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~  329 (764)
T PHA02716        250 PIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHN  329 (764)
T ss_pred             HHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhC
Confidence            9995       3557777775432222111100000         0011111111    222346788899987754322


Q ss_pred             CChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHH--------------cCCHhHHHHHHHCCCC
Q 001365          673 FSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAA--------------LGYDWALEPTTVAGVN  738 (1092)
Q Consensus       673 ~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~--------------~G~~~iVk~LL~~Gad  738 (1092)
                      ..                  .-++++|+++|+++|.+|..|+||||+|+.              .|+.++|++|+++|++
T Consensus       330 ~~------------------~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD  391 (764)
T PHA02716        330 IS------------------TDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD  391 (764)
T ss_pred             CC------------------chHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC
Confidence            11                  117888999999999999999999999875              3789999999999999


Q ss_pred             ccccCCCCccHHHHH----HHcCCHHHHHHHHHcCCCCCCC---------------------------------------
Q 001365          739 INFRDVNGWTALHWA----AYCGRERTVASLIALGAAPGAL---------------------------------------  775 (1092)
Q Consensus       739 in~~D~~G~TpLH~A----a~~G~~eiV~~LLe~GAdin~~---------------------------------------  775 (1092)
                      ++.+|..|+||||.|    ...++.++|++|++.|+..+..                                       
T Consensus       392 In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~  471 (764)
T PHA02716        392 ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPY  471 (764)
T ss_pred             CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhc
Confidence            999999999999942    2357899999999987532100                                       


Q ss_pred             ----------------CCCCCCCCCCCCHHHHHHHcCcHH-----HHHHHHHcCCCCCcccCcccCCCCCcHHHHhh---
Q 001365          776 ----------------SDPTPKYPSGRTPADLASSIGHKG-----IAGYLAESDLSSALSAISLNKKDGDVAEVTGA---  831 (1092)
Q Consensus       776 ----------------~D~n~~D~~G~TPLhlAa~~G~~e-----iv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa~---  831 (1092)
                                      .+++..|..|+||||+|+..|+.+     ++++|++.|     ++++++|++|.||...+.   
T Consensus       472 ~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~G-----ADIN~~d~~G~TPLh~A~~~g  546 (764)
T PHA02716        472 DSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQ-----YNINIPTKNGVTPLMLTMRNN  546 (764)
T ss_pred             cccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCC-----CCCcccCCCCCCHHHHHHHcC
Confidence                            034567889999999999999874     459999999     789999999977754444   


Q ss_pred             -------hhhccccccCCCC
Q 001365          832 -------TAVQTVPQRCPTP  844 (1092)
Q Consensus       832 -------~~v~~l~~~~as~  844 (1092)
                             ..++.+++..+..
T Consensus       547 ~~~~~~~eIvk~LL~~ga~~  566 (764)
T PHA02716        547 RLSGHQWYIVKNILDKRPNV  566 (764)
T ss_pred             CccccHHHHHHHHHhcCCCc
Confidence                   3445555555443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=5.7e-29  Score=296.51  Aligned_cols=252  Identities=14%  Similarity=0.064  Sum_probs=185.0

Q ss_pred             cChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh-
Q 001365          538 EAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN-  616 (1092)
Q Consensus       538 ~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~-  616 (1092)
                      +.||||+||..|+.++|++|++.|++++  ..+..|+||||+||..|+    ...+.+|+..+...+.  ..+.+|++. 
T Consensus        37 ~~tPLh~A~~~g~~e~vk~Ll~~gadvn--~~d~~g~TpLh~A~~~g~----~~~v~~Ll~~~~~~~~--~~~~~~l~~a  108 (477)
T PHA02878         37 PFIPLHQAVEARNLDVVKSLLTRGHNVN--QPDHRDLTPLHIICKEPN----KLGMKEMIRSINKCSV--FYTLVAIKDA  108 (477)
T ss_pred             CcchHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCcc----HhHHHHHHHHHhcccc--ccchhhHHHH
Confidence            5689999999999999999999999987  567779999999999985    3344677777665544  456677763 


Q ss_pred             ---hHHHHHHHHhcC-CCCCCCCCCC-----Cchhh--HHHHHHHhhh----hccCCC-cchHHHHhhhhcCCChHHHHH
Q 001365          617 ---LRMQFGKLLCLT-SVSTPNYDPS-----NLSDI--SQLNSKISSL----LKDEND-DWDLMLKLTAEEKFSSEEVKE  680 (1092)
Q Consensus       617 ---~~~~lvkLLl~g-adv~~~~~~~-----~~~~~--~~ll~~I~~L----l~~d~~-g~t~L~~a~~~~~~s~~~~~~  680 (1092)
                         ++.+++++|+.. .+........     .....  .+++..+...    ...+.. |+||||.|+..+...      
T Consensus       109 ~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~------  182 (477)
T PHA02878        109 FNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQR------  182 (477)
T ss_pred             HHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHH------
Confidence               677788777653 2211110000     00000  0111111111    112344 788888877765432      


Q ss_pred             HHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHc-CCH
Q 001365          681 KLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYC-GRE  759 (1092)
Q Consensus       681 ~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~-G~~  759 (1092)
                                    ++++|+++|+++|..|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. ++.
T Consensus       183 --------------iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~  248 (477)
T PHA02878        183 --------------LTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDY  248 (477)
T ss_pred             --------------HHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCH
Confidence                          77888888999999999999999999999999999999999999999999999999999865 688


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCCC-CCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          760 RTVASLIALGAAPGALSDPTPKYP-SGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       760 eiV~~LLe~GAdin~~~D~n~~D~-~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      ++|++|+++|+++|.      ++. .|.||||+|  .++.+++++|+++|     +|+++.|..|.||...+
T Consensus       249 ~iv~~Ll~~gadvn~------~~~~~g~TpLh~A--~~~~~~v~~Ll~~g-----adin~~d~~g~TpL~~A  307 (477)
T PHA02878        249 DILKLLLEHGVDVNA------KSYILGLTALHSS--IKSERKLKLLLEYG-----ADINSLNSYKLTPLSSA  307 (477)
T ss_pred             HHHHHHHHcCCCCCc------cCCCCCCCHHHHH--ccCHHHHHHHHHCC-----CCCCCcCCCCCCHHHHH
Confidence            999999999998887      443 789999998  46788899999888     77888888887765444

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.2e-28  Score=305.83  Aligned_cols=260  Identities=12%  Similarity=0.028  Sum_probs=197.7

Q ss_pred             CCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHH----------------------
Q 001365          534 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVR----------------------  591 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv----------------------  591 (1092)
                      .+..+.||||+||..|+.++|++|++.|++++  ..+..|.||||+|+..++  .+++                      
T Consensus       174 ~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n--~~~~~g~t~L~~A~~~~~--~~ivk~Ll~~~~~~~~~~~~L~~ai~  249 (682)
T PHA02876        174 KDIYCITPIHYAAERGNAKMVNLLLSYGADVN--IIALDDLSVLECAVDSKN--IDTIKAIIDNRSNINKNDLSLLKAIR  249 (682)
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC--ccCCCCCCHHHHHHHcCC--HHHHHHHHhcCCCCCCCcHHHHHHHH
Confidence            34567899999999999999999999999977  455669999999998874  3322                      


Q ss_pred             -----HHHHHHhCCCCcccccCCCCcHHhhhH-----HHHHHHH-hcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCc
Q 001365          592 -----EFEYRASHIPDVDVADNCGDITSENLR-----MQFGKLL-CLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDD  660 (1092)
Q Consensus       592 -----~fe~Ll~~Gadvna~D~~G~TpL~~~~-----~~lvkLL-l~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g  660 (1092)
                           .+.+|+..|++++..|..|.||||+..     ..++++| ..|++++..+                      ..|
T Consensus       250 ~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d----------------------~~g  307 (682)
T PHA02876        250 NEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKN----------------------IKG  307 (682)
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcC----------------------CCC
Confidence                 234677788888888889999999622     2456655 4577765543                      244


Q ss_pred             chHHHHhhhhcCC-Ch--------------HHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCC
Q 001365          661 WDLMLKLTAEEKF-SS--------------EEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGY  725 (1092)
Q Consensus       661 ~t~L~~a~~~~~~-s~--------------~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~  725 (1092)
                      .||||.|+..+.. ..              .....+.++.++.......++++|++.|+++|.+|..|.||||+|+..|+
T Consensus       308 ~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~  387 (682)
T PHA02876        308 ETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNN  387 (682)
T ss_pred             CCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCC
Confidence            4555554443310 00              00111234444433223337788899999999999999999999999999


Q ss_pred             HhHHHHHHHCCCCccccCCCCccHHHHHHHcCC-HHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcC-cHHHHHH
Q 001365          726 DWALEPTTVAGVNINFRDVNGWTALHWAAYCGR-ERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIG-HKGIAGY  803 (1092)
Q Consensus       726 ~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~-~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G-~~eiv~~  803 (1092)
                      .++|++|+++|++++..+..|.||||+|+..++ ..+|++|+++|+++|.      +|..|+||||+|+..| +.+++++
T Consensus       388 ~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~------~d~~G~TpLh~Aa~~~~~~~iv~l  461 (682)
T PHA02876        388 VVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNS------KNKDLSTPLHYACKKNCKLDVIEM  461 (682)
T ss_pred             HHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCc------CCCCCChHHHHHHHhCCcHHHHHH
Confidence            999999999999999999999999999987665 5678999999999887      7789999999999876 6899999


Q ss_pred             HHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          804 LAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       804 LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      |+++|     ++++.+|..|.++...+
T Consensus       462 Ll~~G-----ad~n~~d~~g~tpl~~a  483 (682)
T PHA02876        462 LLDNG-----ADVNAINIQNQYPLLIA  483 (682)
T ss_pred             HHHCC-----CCCCCCCCCCCCHHHHH
Confidence            99988     78999999997775443

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.5e-28  Score=289.57  Aligned_cols=235  Identities=17%  Similarity=0.116  Sum_probs=190.2

Q ss_pred             CcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHh----------------
Q 001365          535 SQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRAS----------------  598 (1092)
Q Consensus       535 ~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~----------------  598 (1092)
                      +..+.||||+||..|+.+++++|++.|++++  ..+..|.||||+|+..|+  .++  +++|+.                
T Consensus        32 ~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n--~~~~~~~t~L~~A~~~~~--~~i--v~~Ll~~g~~~~~~~~~~~~~~  105 (434)
T PHA02874         32 VDETTTPLIDAIRSGDAKIVELFIKHGADIN--HINTKIPHPLLTAIKIGA--HDI--IKLLIDNGVDTSILPIPCIEKD  105 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCC--HHH--HHHHHHCCCCCCcchhccCCHH
Confidence            3456799999999999999999999999977  556679999999999985  333  344554                


Q ss_pred             -------CCCCcccccCCCCcHHhh----hHHHHHHHHh-cCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHH
Q 001365          599 -------HIPDVDVADNCGDITSEN----LRMQFGKLLC-LTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLK  666 (1092)
Q Consensus       599 -------~Gadvna~D~~G~TpL~~----~~~~lvkLLl-~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~  666 (1092)
                             .|++++.+|..|.||||+    ++.+++++|+ .|++++..                      +..|.||||.
T Consensus       106 ~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~----------------------d~~g~tpLh~  163 (434)
T PHA02874        106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE----------------------DDNGCYPIHI  163 (434)
T ss_pred             HHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCc----------------------CCCCCCHHHH
Confidence                   456677788888999985    5667777764 46665443                      2578889998


Q ss_pred             hhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCC
Q 001365          667 LTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNG  746 (1092)
Q Consensus       667 a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G  746 (1092)
                      |+..+...                    +++.|+++|++++..|..|.||||+|+..|+.++|++|++.|++++.++..|
T Consensus       164 A~~~~~~~--------------------iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g  223 (434)
T PHA02874        164 AIKHNFFD--------------------IIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNG  223 (434)
T ss_pred             HHHCCcHH--------------------HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCC
Confidence            87755432                    7788889999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcC-cHHHHHHHHHcCCCCCcccCcccCCCCCc
Q 001365          747 WTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIG-HKGIAGYLAESDLSSALSAISLNKKDGDV  825 (1092)
Q Consensus       747 ~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G-~~eiv~~LLe~Ga~~h~adlnlkD~~G~t  825 (1092)
                      +||||+|+..++ +++.+|+ .|+++|.      +|..|+||||+|+..+ +.+++++|+++|     ++++++|..|.|
T Consensus       224 ~TpL~~A~~~~~-~~i~~Ll-~~~~in~------~d~~G~TpLh~A~~~~~~~~iv~~Ll~~g-----ad~n~~d~~g~T  290 (434)
T PHA02874        224 FTPLHNAIIHNR-SAIELLI-NNASIND------QDIDGSTPLHHAINPPCDIDIIDILLYHK-----ADISIKDNKGEN  290 (434)
T ss_pred             CCHHHHHHHCCh-HHHHHHH-cCCCCCC------cCCCCCCHHHHHHhcCCcHHHHHHHHHCc-----CCCCCCCCCCCC
Confidence            999999998765 4666666 5787766      7889999999999876 789999999988     789999999977


Q ss_pred             HHHHh
Q 001365          826 AEVTG  830 (1092)
Q Consensus       826 a~iaa  830 (1092)
                      +...+
T Consensus       291 pL~~A  295 (434)
T PHA02874        291 PIDTA  295 (434)
T ss_pred             HHHHH
Confidence            75444

>PHA03095 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.1e-28  Score=292.14  Aligned_cols=225  Identities=22%  Similarity=0.186  Sum_probs=192.6

Q ss_pred             CcccChHHHHHHHcC-CcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcH
Q 001365          535 SQQEAENCKWSCMFG-EIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDIT  613 (1092)
Q Consensus       535 ~~~~~TpLH~A~~fG-~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~Tp  613 (1092)
                      +..+.||||+||..| ..+++++|++.|++++  ..+..|.||||+||....  .....+++|+..|++++..|..|.||
T Consensus        80 ~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in--~~~~~g~tpLh~a~~~~~--~~~~iv~~Ll~~gad~~~~d~~g~tp  155 (471)
T PHA03095         80 ERCGFTPLHLYLYNATTLDVIKLLIKAGADVN--AKDKVGRTPLHVYLSGFN--INPKVIRLLLRKGADVNALDLYGMTP  155 (471)
T ss_pred             CCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCC--CCCCCCCCHHHHHhhCCc--CCHHHHHHHHHcCCCCCccCCCCCCH
Confidence            346889999999999 5999999999999977  667779999999995542  23445578999999999999999999


Q ss_pred             Hhh------hHHHHHHHHh-cCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHH
Q 001365          614 SEN------LRMQFGKLLC-LTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKL  686 (1092)
Q Consensus       614 L~~------~~~~lvkLLl-~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a  686 (1092)
                      ||.      ...+++++|. .|++++..                      +..|+++||.++......            
T Consensus       156 L~~a~~~~~~~~~iv~~Ll~~g~~~~~~----------------------d~~g~t~Lh~~~~~~~~~------------  201 (471)
T PHA03095        156 LAVLLKSRNANVELLRLLIDAGADVYAV----------------------DDRFRSLLHHHLQSFKPR------------  201 (471)
T ss_pred             HHHHHHcCCCCHHHHHHHHHcCCCCccc----------------------CCCCCCHHHHHHHHCCCc------------
Confidence            984      2456777664 46665443                      257899999887643221            


Q ss_pred             HHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCH--hHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHH
Q 001365          687 LKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYD--WALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVAS  764 (1092)
Q Consensus       687 ~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~--~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~  764 (1092)
                            .-+++.|++.|++++.+|..|.||||+||..|+.  .++..|+..|+++|.+|..|+||||+|+..|+.++|++
T Consensus       202 ------~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~  275 (471)
T PHA03095        202 ------ARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRR  275 (471)
T ss_pred             ------HHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence                  1277889999999999999999999999999975  68899999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       765 LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                      ||++||+++.      +|..|+||||+|+..|+.+++++|++.++
T Consensus       276 LL~~gad~n~------~~~~g~tpl~~A~~~~~~~~v~~LL~~~~  314 (471)
T PHA03095        276 LIALGADINA------VSSDGNTPLSLMVRNNNGRAVRAALAKNP  314 (471)
T ss_pred             HHHcCCCCcc------cCCCCCCHHHHHHHhCCHHHHHHHHHhCC
Confidence            9999999988      77999999999999999999999999883

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=8.3e-30  Score=256.33  Aligned_cols=203  Identities=24%  Similarity=0.256  Sum_probs=167.7

Q ss_pred             ChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHH-hCCCCcccccCCCCcHHhhh
Q 001365          539 AENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRA-SHIPDVDVADNCGDITSENL  617 (1092)
Q Consensus       539 ~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll-~~Gadvna~D~~G~TpL~~~  617 (1092)
                      .++.+.+|+.....-+++|++.....-....|.+|+||||+||..|+  .+++.|  |+ ..+..+|.+|          
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~--~eiv~f--Llsq~nv~~ddkD----------   69 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGH--VEIVYF--LLSQPNVKPDDKD----------   69 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCc--hhHHHH--HHhcCCCCCCCcc----------
Confidence            45788889988888899998876521112234579999999999986  666654  44 4455555554          


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHH
Q 001365          618 RMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQ  697 (1092)
Q Consensus       618 ~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~Lvk  697 (1092)
                                                              +.||+|||.++..+...                    +++
T Consensus        70 ----------------------------------------daGWtPlhia~s~g~~e--------------------vVk   89 (226)
T KOG4412|consen   70 ----------------------------------------DAGWTPLHIAASNGNDE--------------------VVK   89 (226)
T ss_pred             ----------------------------------------ccCCchhhhhhhcCcHH--------------------HHH
Confidence                                                    45666666666544321                    667


Q ss_pred             HHHhC-CCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 001365          698 KAAEG-GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS  776 (1092)
Q Consensus       698 lLle~-GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~  776 (1092)
                      -|+.+ |+++|..+..|+|||||||..|..+++.+|+++|+.|+.+|..|.||||-||.-|..+++++|+..||.+|.  
T Consensus        90 ~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~--  167 (226)
T KOG4412|consen   90 ELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNT--  167 (226)
T ss_pred             HHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCc--
Confidence            77776 999999999999999999999999999999999999999999999999999999999999999999999888  


Q ss_pred             CCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH
Q 001365          777 DPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA  826 (1092)
Q Consensus       777 D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta  826 (1092)
                          +|+.|+||||.|...||.+++.+|+++|     ++..+.|++|++.
T Consensus       168 ----qDk~G~TpL~~al~e~~~d~a~lLV~~g-----Ad~~~edke~t~~  208 (226)
T KOG4412|consen  168 ----QDKYGFTPLHHALAEGHPDVAVLLVRAG-----ADTDREDKEGTAL  208 (226)
T ss_pred             ----ccccCccHHHHHHhccCchHHHHHHHhc-----cceeeccccCchH
Confidence                8899999999999999999999999998     7899999999443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=6.1e-30  Score=257.29  Aligned_cols=182  Identities=25%  Similarity=0.286  Sum_probs=154.9

Q ss_pred             CcCCcccChHHHHHHHcCCcHHHHHHH-HCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCC
Q 001365          532 FLMSQQEAENCKWSCMFGEIEVPAEIV-AGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCG  610 (1092)
Q Consensus       532 fl~~~~~~TpLH~A~~fG~veVv~~LL-~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G  610 (1092)
                      +..+..++|||||||.||+.+++.+|+ +.++.+|  ..|..|+||||+||.+|.  .+|++. ++-..|+++|+..+.|
T Consensus        32 ~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~d--dkDdaGWtPlhia~s~g~--~evVk~-Ll~r~~advna~tn~G  106 (226)
T KOG4412|consen   32 ARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPD--DKDDAGWTPLHIAASNGN--DEVVKE-LLNRSGADVNATTNGG  106 (226)
T ss_pred             ccccccCCceeeeeeecCchhHHHHHHhcCCCCCC--CccccCCchhhhhhhcCc--HHHHHH-HhcCCCCCcceecCCC
Confidence            344557899999999999999999999 5666655  778999999999999994  777753 3444499999887766


Q ss_pred             CcHHhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhh
Q 001365          611 DITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEK  690 (1092)
Q Consensus       611 ~TpL~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~  690 (1092)
                      .|+||                                                  +|+..+.++                
T Consensus       107 ~T~LH--------------------------------------------------yAagK~r~e----------------  120 (226)
T KOG4412|consen  107 QTCLH--------------------------------------------------YAAGKGRLE----------------  120 (226)
T ss_pred             cceeh--------------------------------------------------hhhcCChhh----------------
Confidence            66666                                                  344333332                


Q ss_pred             hHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCC
Q 001365          691 LQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGA  770 (1092)
Q Consensus       691 l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GA  770 (1092)
                          +..+|+++|+.|+.+|..|+||||-||.-|.+++|++||..|+.+|.+|..|+||||.|...|+.++..+|+++||
T Consensus       121 ----IaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gA  196 (226)
T KOG4412|consen  121 ----IAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGA  196 (226)
T ss_pred             ----HHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhcc
Confidence                7788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHc
Q 001365          771 APGALSDPTPKYPSGRTPADLASSI  795 (1092)
Q Consensus       771 din~~~D~n~~D~~G~TPLhlAa~~  795 (1092)
                      ++..      .|+.| |||-+|+-.
T Consensus       197 d~~~------edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  197 DTDR------EDKEG-TALRIACNE  214 (226)
T ss_pred             ceee------ccccC-chHHHHHHH
Confidence            9988      77888 999888743

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.3e-28  Score=274.33  Aligned_cols=200  Identities=10%  Similarity=-0.022  Sum_probs=122.4

Q ss_pred             cCCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCc
Q 001365          533 LMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDI  612 (1092)
Q Consensus       533 l~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~T  612 (1092)
                      ..+..+.||||+||.+|+.++++.|++.|++++.  .  .|.||||+|+.+|+  .+  .+++|+..|++++.+|..|.|
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~--~--d~~TpLh~Aa~~g~--~e--iV~lLL~~Gadvn~~d~~G~T   96 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGALKNL--L--ENEFPLHQAATLED--TK--IVKILLFSGMDDSQFDDKGNT   96 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcC--C--CCCCHHHHHHHCCC--HH--HHHHHHHCCCCCCCCCCCCCC
Confidence            4455678888888888888888888888887653  2  36788888888774  33  345677888888877777776


Q ss_pred             HHhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhH
Q 001365          613 TSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQ  692 (1092)
Q Consensus       613 pL~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~  692 (1092)
                      |||+                                                  |+..+...                  
T Consensus        97 pLh~--------------------------------------------------Aa~~g~~e------------------  108 (284)
T PHA02791         97 ALYY--------------------------------------------------AVDSGNMQ------------------  108 (284)
T ss_pred             HHHH--------------------------------------------------HHHcCCHH------------------
Confidence            6663                                                  33222211                  


Q ss_pred             HHHHHHHHhCCCCCCcccCCCC-cHHHHHHHcCCHhHHHHHHHCCCCccccC-CCCccHHHHHHHcCCHHHHHHHHHcCC
Q 001365          693 VWLVQKAAEGGKGPCVLDHCGQ-GVLHFAAALGYDWALEPTTVAGVNINFRD-VNGWTALHWAAYCGRERTVASLIALGA  770 (1092)
Q Consensus       693 ~~LvklLle~GadvN~~D~~G~-TpLH~AA~~G~~~iVk~LL~~Gadin~~D-~~G~TpLH~Aa~~G~~eiV~~LLe~GA  770 (1092)
                        ++++|+++|+++|.++..|+ ||||+||..|+.++|++||++|.+.  .| ..|+||||+||..|+.++|++||++||
T Consensus       109 --ivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gA  184 (284)
T PHA02791        109 --TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMT  184 (284)
T ss_pred             --HHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCC
Confidence              44555555666555555553 5666666666666666666554432  12 135566666666666666666666666


Q ss_pred             CCCCCCCCCCCCCCCCCH-HHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCC
Q 001365          771 APGALSDPTPKYPSGRTP-ADLASSIGHKGIAGYLAESDLSSALSAISLNKKDG  823 (1092)
Q Consensus       771 din~~~D~n~~D~~G~TP-LhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G  823 (1092)
                      ++|.      +|..|.|| ||+|+..|+.++|++|+++|     ++++.+|.+|
T Consensus       185 d~n~------~d~~g~t~~L~~Aa~~~~~e~v~lLl~~G-----a~in~~~~~~  227 (284)
T PHA02791        185 STNT------NNSLLFIPDIKLAIDNKDLEMLQALFKYD-----INIYSVNLEN  227 (284)
T ss_pred             CCCc------ccCCCCChHHHHHHHcCCHHHHHHHHHCC-----CCCccCcccC
Confidence            5554      44555554 56666666666666666555     4455555544

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.96  E-value=3.6e-28  Score=288.69  Aligned_cols=220  Identities=19%  Similarity=0.195  Sum_probs=197.2

Q ss_pred             cccChHHHH-----HHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHH--HcCCCchhHHHHHHHHhCCCCcccccC
Q 001365          536 QQEAENCKW-----SCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTC--SNRLSCSEVREFEYRASHIPDVDVADN  608 (1092)
Q Consensus       536 ~~~~TpLH~-----A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa--~ng~~~seVv~fe~Ll~~Gadvna~D~  608 (1092)
                      ..+.||||+     |+..|+.++++.|++.|++++  ..+..|.||||+|+  ..|+    ...+++|+..|++++..+.
T Consensus        66 ~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~--~~d~~g~tpL~~A~~~~~~~----~~iv~~Ll~~g~~~~~~~~  139 (480)
T PHA03100         66 KNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVN--APDNNGITPLLYAISKKSNS----YSIVEYLLDNGANVNIKNS  139 (480)
T ss_pred             ccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCC--CCCCCCCchhhHHHhcccCh----HHHHHHHHHcCCCCCccCC
Confidence            346789999     999999999999999999976  67778999999999  7764    5556789999999999999


Q ss_pred             CCCcHHhh----h--HHHHHHHHh-cCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHH
Q 001365          609 CGDITSEN----L--RMQFGKLLC-LTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEK  681 (1092)
Q Consensus       609 ~G~TpL~~----~--~~~lvkLLl-~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~  681 (1092)
                      .|.||||.    +  +.+++++|. .|++++..+                      ..|+||||.|+..+...       
T Consensus       140 ~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d----------------------~~g~tpL~~A~~~~~~~-------  190 (480)
T PHA03100        140 DGENLLHLYLESNKIDLKILKLLIDKGVDINAKN----------------------RYGYTPLHIAVEKGNID-------  190 (480)
T ss_pred             CCCcHHHHHHHcCCChHHHHHHHHHCCCCccccc----------------------CCCCCHHHHHHHhCCHH-------
Confidence            99999995    5  778888775 477665432                      47899999998876432       


Q ss_pred             HHHHHHHhhhHHHHHHHHHhCCCCCCcccCCC------CcHHHHHHHcCC--HhHHHHHHHCCCCccccCCCCccHHHHH
Q 001365          682 LVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCG------QGVLHFAAALGY--DWALEPTTVAGVNINFRDVNGWTALHWA  753 (1092)
Q Consensus       682 lL~~a~k~~l~~~LvklLle~GadvN~~D~~G------~TpLH~AA~~G~--~~iVk~LL~~Gadin~~D~~G~TpLH~A  753 (1092)
                                   ++++|+++|++++..+..|      .||||+|+..|+  .++|++|+++|+++|.+|..|+||||+|
T Consensus       191 -------------iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A  257 (480)
T PHA03100        191 -------------VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYA  257 (480)
T ss_pred             -------------HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence                         7889999999999999999      999999999999  9999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          754 AYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       754 a~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                      +..|+.++|++|+++||+++.      +|..|.||||+|+..++.+++++|+++|+
T Consensus       258 ~~~~~~~iv~~Ll~~gad~n~------~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~  307 (480)
T PHA03100        258 VYNNNPEFVKYLLDLGANPNL------VNKYGDTPLHIAILNNNKEIFKLLLNNGP  307 (480)
T ss_pred             HHcCCHHHHHHHHHcCCCCCc------cCCCCCcHHHHHHHhCCHHHHHHHHhcCC
Confidence            999999999999999999887      77999999999999999999999999994

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=1.3e-27  Score=282.68  Aligned_cols=216  Identities=13%  Similarity=0.096  Sum_probs=180.8

Q ss_pred             ChHHHHHHHc--CCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh
Q 001365          539 AENCKWSCMF--GEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN  616 (1092)
Q Consensus       539 ~TpLH~A~~f--G~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~  616 (1092)
                      .++||.+|..  ++.+++++||+.|+++|  ..+..|+||||+||..|+  .++  +++|+.+|+++|.+|..|.||||+
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn--~~d~~G~TpLh~Aa~~g~--~ei--v~lLL~~GAdin~~d~~g~TpLh~  111 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSPN--ETDDDGNYPLHIASKINN--NRI--VAMLLTHGADPNACDKQHKTPLYY  111 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCCC--ccCCCCCCHHHHHHHcCC--HHH--HHHHHHCcCCCCCCCCCCCCHHHH
Confidence            5799988754  45689999999999988  567779999999999985  444  468999999999999999999995


Q ss_pred             h------HHHHHHHH-hcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHh
Q 001365          617 L------RMQFGKLL-CLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKE  689 (1092)
Q Consensus       617 ~------~~~lvkLL-l~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~  689 (1092)
                      .      ..+++++| ..|++++...                     +..|.+||+. +..+..                
T Consensus       112 A~~~~~~~~e~v~lLl~~Gadin~~~---------------------d~~g~tpL~a-a~~~~~----------------  153 (446)
T PHA02946        112 LSGTDDEVIERINLLVQYGAKINNSV---------------------DEEGCGPLLA-CTDPSE----------------  153 (446)
T ss_pred             HHHcCCchHHHHHHHHHcCCCccccc---------------------CCCCCcHHHH-HHCCCh----------------
Confidence            2      35666666 5577776432                     2578899974 332322                


Q ss_pred             hhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcC--CHhHHHHHHHCCCCccccCCCCccHHHHHHHcC--CHHHHHHH
Q 001365          690 KLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALG--YDWALEPTTVAGVNINFRDVNGWTALHWAAYCG--RERTVASL  765 (1092)
Q Consensus       690 ~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G--~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G--~~eiV~~L  765 (1092)
                          .++++|++.|++++.+|..|+||||+|+..+  +.+++++|+++|++++.+|.+|+||||+||..|  +.+++++|
T Consensus       154 ----~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lL  229 (446)
T PHA02946        154 ----RVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLL  229 (446)
T ss_pred             ----HHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHH
Confidence                1778899999999999999999999998865  468999999999999999999999999999986  88999999


Q ss_pred             HHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCc-HHHHHHHHHcCC
Q 001365          766 IALGAAPGALSDPTPKYPSGRTPADLASSIGH-KGIAGYLAESDL  809 (1092)
Q Consensus       766 Le~GAdin~~~D~n~~D~~G~TPLhlAa~~G~-~eiv~~LLe~Ga  809 (1092)
                      +. |+++|.      +|..|.||||+|+..++ .+++++|+++|.
T Consensus       230 l~-gadin~------~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~  267 (446)
T PHA02946        230 LP-STDVNK------QNKFGDSPLTLLIKTLSPAHLINKLLSTSN  267 (446)
T ss_pred             Hc-CCCCCC------CCCCCCCHHHHHHHhCChHHHHHHHHhCCC
Confidence            95 898877      88999999999999988 589999999884

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=8.8e-28  Score=294.51  Aligned_cols=241  Identities=12%  Similarity=0.030  Sum_probs=183.2

Q ss_pred             CCcccChHHHHHHHcCCc--HHHHHHHHCCCCCCCCCCCCCCchHHHHHHHc---CCC----------------------
Q 001365          534 MSQQEAENCKWSCMFGEI--EVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSN---RLS----------------------  586 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~v--eVv~~LL~~Gadin~~~~d~~G~TPLHlAa~n---g~~----------------------  586 (1092)
                      .+..+.||||+||..|+.  +++++||+.|++++  .++..|.||||+|+.+   ++.                      
T Consensus       208 kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN--~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L  285 (764)
T PHA02716        208 QNNHLITPLHTYLITGNVCASVIKKIIELGGDMD--MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMIL  285 (764)
T ss_pred             CCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhh
Confidence            345689999999999965  89999999999988  6677899999987532   100                      


Q ss_pred             --------chhHHHHHHHHhCCCCcccccCCCCcHHhh------hHHHHHHHHh-cCCCCCCCCCCCCchhhHHHHHHHh
Q 001365          587 --------CSEVREFEYRASHIPDVDVADNCGDITSEN------LRMQFGKLLC-LTSVSTPNYDPSNLSDISQLNSKIS  651 (1092)
Q Consensus       587 --------~seVv~fe~Ll~~Gadvna~D~~G~TpL~~------~~~~lvkLLl-~gadv~~~~~~~~~~~~~~ll~~I~  651 (1092)
                              ...+..+++|++.|+++|.+|..|.||||+      ++.+++++|+ .|++++..+                
T Consensus       286 ~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD----------------  349 (764)
T PHA02716        286 HSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPD----------------  349 (764)
T ss_pred             HHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCC----------------
Confidence                    012445678999999999999999999995      2456777774 477765543                


Q ss_pred             hhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHH----HHcCCHh
Q 001365          652 SLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFA----AALGYDW  727 (1092)
Q Consensus       652 ~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~A----A~~G~~~  727 (1092)
                            ..|+||||.++......  .    .+..........-++++|+++|++++.+|..|+||||.+    ...++.+
T Consensus       350 ------~~G~TPLH~A~~~lav~--~----~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~d  417 (764)
T PHA02716        350 ------NIGNTVLHTYLSMLSVV--N----ILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYD  417 (764)
T ss_pred             ------CCCCCHHHHHHHhhhhh--c----cccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHH
Confidence                  58999999875421100  0    000000011122388999999999999999999999942    2356788


Q ss_pred             HHHHHHHCCC-------------------------------------------------------------CccccCCCC
Q 001365          728 ALEPTTVAGV-------------------------------------------------------------NINFRDVNG  746 (1092)
Q Consensus       728 iVk~LL~~Ga-------------------------------------------------------------din~~D~~G  746 (1092)
                      ++++|++.|+                                                             ++|.+|..|
T Consensus       418 IvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G  497 (764)
T PHA02716        418 IIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSG  497 (764)
T ss_pred             HHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCC
Confidence            8888887643                                                             335567889


Q ss_pred             ccHHHHHHHcCCHH-----HHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcH-----HHHHHHHHcCCC
Q 001365          747 WTALHWAAYCGRER-----TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHK-----GIAGYLAESDLS  810 (1092)
Q Consensus       747 ~TpLH~Aa~~G~~e-----iV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~-----eiv~~LLe~Ga~  810 (1092)
                      +||||+||..|+.+     ++++||+.||++|+      +|..|+||||+|+.+|+.     ++|++||++|+.
T Consensus       498 ~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~------~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~  565 (764)
T PHA02716        498 MTPLHVSIISHTNANIVMDSFVYLLSIQYNINI------PTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPN  565 (764)
T ss_pred             CCHHHHHHHcCCccchhHHHHHHHHhCCCCCcc------cCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCC
Confidence            99999999999874     45999999999988      789999999999999976     999999999943

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=6.2e-27  Score=280.38  Aligned_cols=239  Identities=11%  Similarity=0.008  Sum_probs=183.0

Q ss_pred             ccChHHHHHHHcC--CcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCc--hhHHHHHHHHhCCCCcccccCCCCc
Q 001365          537 QEAENCKWSCMFG--EIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSC--SEVREFEYRASHIPDVDVADNCGDI  612 (1092)
Q Consensus       537 ~~~TpLH~A~~fG--~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~--seVv~fe~Ll~~Gadvna~D~~G~T  612 (1092)
                      .+.|+||+++..+  +.++|++||++|+++|..  + .|.||||.|+.++...  .....+++|+++|+++|.+|..|.|
T Consensus        34 ~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~--~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~t  110 (494)
T PHA02989         34 RGNSILLLYLKRKDVKIKIVKLLIDNGADVNYK--G-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVS  110 (494)
T ss_pred             CCCCHHHHHHhcCCCChHHHHHHHHcCCCccCC--C-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCc
Confidence            4677887655543  678999999999988843  2 4789999888765311  1234457888999999999999999


Q ss_pred             HHhhh-------HHHHHHHH-hcCCCC-CCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHH
Q 001365          613 TSENL-------RMQFGKLL-CLTSVS-TPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLV  683 (1092)
Q Consensus       613 pL~~~-------~~~lvkLL-l~gadv-~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL  683 (1092)
                      |||..       ..+++++| ..|+++ +..                      +..|+||||.++......         
T Consensus       111 pL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~----------------------d~~g~tpLh~a~~~~~~~---------  159 (494)
T PHA02989        111 PIVCFIYNSNINNCDMLRFLLSKGINVNDVK----------------------NSRGYNLLHMYLESFSVK---------  159 (494)
T ss_pred             HHHHHHHhcccCcHHHHHHHHHCCCCccccc----------------------CCCCCCHHHHHHHhccCC---------
Confidence            99872       35677776 447776 332                      257889998876543221         


Q ss_pred             HHHHHhhhHHHHHHHHHhCCCCCCc-ccCCCCcHHHHHHHcC----CHhHHHHHHHCCCCccccCCCCccHHHHHHHcC-
Q 001365          684 QKLLKEKLQVWLVQKAAEGGKGPCV-LDHCGQGVLHFAAALG----YDWALEPTTVAGVNINFRDVNGWTALHWAAYCG-  757 (1092)
Q Consensus       684 ~~a~k~~l~~~LvklLle~GadvN~-~D~~G~TpLH~AA~~G----~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G-  757 (1092)
                               ..++++|+++|++++. .+..|.||||+|+..+    +.++|++|+++|++++.+|..|.||||.++..+ 
T Consensus       160 ---------~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~  230 (494)
T PHA02989        160 ---------KDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNK  230 (494)
T ss_pred             ---------HHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhch
Confidence                     1277888899999888 5778999999887654    889999999999999998888899998876543 


Q ss_pred             -----CHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          758 -----RERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       758 -----~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                           ..+++++|+ .|+++|.      +|..|+||||+|+..|+.+++++|+++|     +|++.+|..|.||...+
T Consensus       231 ~~~~~~~~il~~l~-~~advn~------~d~~G~TpL~~Aa~~~~~~~v~~LL~~G-----adin~~d~~G~TpL~~A  296 (494)
T PHA02989        231 ILSKKEFKVLNFIL-KYIKINK------KDKKGFNPLLISAKVDNYEAFNYLLKLG-----DDIYNVSKDGDTVLTYA  296 (494)
T ss_pred             hhcccchHHHHHHH-hCCCCCC------CCCCCCCHHHHHHHhcCHHHHHHHHHcC-----CCccccCCCCCCHHHHH
Confidence                 467777665 4688777      8899999999999999999999999999     78999999997775444

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.95  E-value=7.8e-27  Score=289.78  Aligned_cols=272  Identities=15%  Similarity=0.010  Sum_probs=162.8

Q ss_pred             cChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh-
Q 001365          538 EAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN-  616 (1092)
Q Consensus       538 ~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~-  616 (1092)
                      ..++|+.|+..|+.+++++|++.|+++|  ..+..|.||||+||.+|+    ...+++|++.|++++..+..|.||||. 
T Consensus       145 ~~~~l~~~i~~~~~~i~k~Ll~~Gadvn--~~d~~G~TpLh~Aa~~G~----~~iv~~LL~~Gad~n~~~~~g~t~L~~A  218 (682)
T PHA02876        145 YMKLIKERIQQDELLIAEMLLEGGADVN--AKDIYCITPIHYAAERGN----AKMVNLLLSYGADVNIIALDDLSVLECA  218 (682)
T ss_pred             hhHHHHHHHHCCcHHHHHHHHhCCCCCC--CCCCCCCCHHHHHHHCCC----HHHHHHHHHCCCCcCccCCCCCCHHHHH
Confidence            3679999999999999999999999988  567779999999999986    455578999999999999999999995 


Q ss_pred             ---hHHHHHHHHhc-CCCCCCCCC------CCCchhhHHHH-HHHhhhhccCCCcchHHHHhhhhcCCCh----------
Q 001365          617 ---LRMQFGKLLCL-TSVSTPNYD------PSNLSDISQLN-SKISSLLKDENDDWDLMLKLTAEEKFSS----------  675 (1092)
Q Consensus       617 ---~~~~lvkLLl~-gadv~~~~~------~~~~~~~~~ll-~~I~~Ll~~d~~g~t~L~~a~~~~~~s~----------  675 (1092)
                         ++.+++++|.. +++......      ..+..+...++ ..-......+..|+||||.|+..+....          
T Consensus       219 ~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~ga  298 (682)
T PHA02876        219 VDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGA  298 (682)
T ss_pred             HHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCC
Confidence               66778887754 444332211      00000000110 0000112234578899999887654321          


Q ss_pred             -----HHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHc-CCHhHHHHHHHCCCCccccCCCCccH
Q 001365          676 -----EEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAAL-GYDWALEPTTVAGVNINFRDVNGWTA  749 (1092)
Q Consensus       676 -----~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~-G~~~iVk~LL~~Gadin~~D~~G~Tp  749 (1092)
                           .....+.++.++..+....+++.|+..|+++|..|..|.||||+|+.. ++.+++.+|++.|+++|.+|..|+||
T Consensus       299 din~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~Tp  378 (682)
T PHA02876        299 DVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTP  378 (682)
T ss_pred             CCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCH
Confidence                 001112344444433222244555555555555555555555555553 24555555555555555555555555


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCc-HHHHHHHHHcCCCCCcccCcccCCCCCcH
Q 001365          750 LHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGH-KGIAGYLAESDLSSALSAISLNKKDGDVA  826 (1092)
Q Consensus       750 LH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~-~eiv~~LLe~Ga~~h~adlnlkD~~G~ta  826 (1092)
                      ||+|+..|+.++|++|+++|++++.      .+..|.||||+|+..++ ..++++|++.|     ++++.+|..|.||
T Consensus       379 Lh~Aa~~~~~~iv~~Ll~~gad~~~------~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g-----adin~~d~~G~Tp  445 (682)
T PHA02876        379 IHYAAVRNNVVIINTLLDYGADIEA------LSQKIGTALHFALCGTNPYMSVKTLIDRG-----ANVNSKNKDLSTP  445 (682)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCccc------cCCCCCchHHHHHHcCCHHHHHHHHHhCC-----CCCCcCCCCCChH
Confidence            5555555555555555555555544      34455555555554333 33455555555     4555555555444

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.3e-26  Score=273.10  Aligned_cols=266  Identities=16%  Similarity=0.054  Sum_probs=204.2

Q ss_pred             HHHHHHHcCCcHHHHHHHHCC-CCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh---
Q 001365          541 NCKWSCMFGEIEVPAEIVAGG-VLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN---  616 (1092)
Q Consensus       541 pLH~A~~fG~veVv~~LL~~G-adin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~---  616 (1092)
                      .|+.||..|++++++.|++.+ ..++  ..+..|.||||+|+..|+    ...+++|+..|+++|..+..|.||||.   
T Consensus         4 ~l~~ai~~gd~~~v~~ll~~~~~~~n--~~~~~~~tpL~~A~~~g~----~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~   77 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIKNKGNCIN--ISVDETTTPLIDAIRSGD----AKIVELFIKHGADINHINTKIPHPLLTAIK   77 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCC--CcCCCCCCHHHHHHHcCC----HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            688999999999999999754 4444  445679999999999986    444578999999999999999999995   


Q ss_pred             -hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHH-HHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHH
Q 001365          617 -LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLN-SKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQV  693 (1092)
Q Consensus       617 -~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll-~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~  693 (1092)
                       ++.+++++|.. |++...........+....+ ..-..+...+..|.||||.|+..+...                   
T Consensus        78 ~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~-------------------  138 (434)
T PHA02874         78 IGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLE-------------------  138 (434)
T ss_pred             cCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHH-------------------
Confidence             77888888864 66553322211112211111 111122223567888888888765543                   


Q ss_pred             HHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCC
Q 001365          694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPG  773 (1092)
Q Consensus       694 ~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin  773 (1092)
                       ++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|++.|++++
T Consensus       139 -~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~  217 (434)
T PHA02874        139 -SIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIM  217 (434)
T ss_pred             -HHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCc
Confidence             7788999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHhh------hhhccccccCCCCC
Q 001365          774 ALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGA------TAVQTVPQRCPTPV  845 (1092)
Q Consensus       774 ~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa~------~~v~~l~~~~as~~  845 (1092)
                      .      ++..|.||||+|+..+. .++.+|+ .|     ++++.+|..|.||...+.      ..+..+....+...
T Consensus       218 ~------~~~~g~TpL~~A~~~~~-~~i~~Ll-~~-----~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n  282 (434)
T PHA02874        218 N------KCKNGFTPLHNAIIHNR-SAIELLI-NN-----ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADIS  282 (434)
T ss_pred             C------CCCCCCCHHHHHHHCCh-HHHHHHH-cC-----CCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCC
Confidence            7      67899999999998875 5666666 35     678899999977754433      23444555555444

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.9e-26  Score=275.62  Aligned_cols=281  Identities=11%  Similarity=0.033  Sum_probs=196.8

Q ss_pred             CCcccChHHHHHHHcC---CcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCC--CcccccC
Q 001365          534 MSQQEAENCKWSCMFG---EIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIP--DVDVADN  608 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG---~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Ga--dvna~D~  608 (1092)
                      .+..|.||||||+..|   +.+++++||++||+++  ..|..|.||||+|+..++...+++  ++|+..|+  +++..|.
T Consensus        37 kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin--~kD~~G~TPLh~Aa~~~~~~~eIv--~~Ll~~~~~~~~~~~~~  112 (672)
T PHA02730         37 IDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERL--CRNNEGLTPLGVYSKRKYVKSQIV--HLLISSYSNASNELTSN  112 (672)
T ss_pred             cCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCc--ccCCCCCChHHHHHHcCCCcHHHH--HHHHhcCCCCCcccccc
Confidence            4456899999999997   5899999999999988  677889999999998764335555  67888855  4577787


Q ss_pred             CCCcHHhh------hHHHHHHHHhc----------------------------------------CCCCCCC----C--C
Q 001365          609 CGDITSEN------LRMQFGKLLCL----------------------------------------TSVSTPN----Y--D  636 (1092)
Q Consensus       609 ~G~TpL~~------~~~~lvkLLl~----------------------------------------gadv~~~----~--~  636 (1092)
                      .+.+|++.      ++.+++++|+.                                        |++++.-    .  .
T Consensus       113 ~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~  192 (672)
T PHA02730        113 INDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYD  192 (672)
T ss_pred             cCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccccccccc
Confidence            78888874      33456666652                                        2222100    0  0


Q ss_pred             CCCchhhHH--HH---------HHHhhh--------hccCCCcchHHHHhhhh---------------------------
Q 001365          637 PSNLSDISQ--LN---------SKISSL--------LKDENDDWDLMLKLTAE---------------------------  670 (1092)
Q Consensus       637 ~~~~~~~~~--ll---------~~I~~L--------l~~d~~g~t~L~~a~~~---------------------------  670 (1092)
                      .........  ++         ..+..+        ...+..|.||||.+...                           
T Consensus       193 ~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~  272 (672)
T PHA02730        193 SDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQP  272 (672)
T ss_pred             CCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccch
Confidence            000000000  00         112211        22367899999842221                           


Q ss_pred             ------------------cCCChHH--------------------------------------------HHHHHHHHHHH
Q 001365          671 ------------------EKFSSEE--------------------------------------------VKEKLVQKLLK  688 (1092)
Q Consensus       671 ------------------~~~s~~~--------------------------------------------~~~~lL~~a~k  688 (1092)
                                        .+++..-                                            ....+|+.-+.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~  352 (672)
T PHA02730        273 YIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLH  352 (672)
T ss_pred             hhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHh
Confidence                              0111100                                            00012333333


Q ss_pred             hh--hHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCC----HhHHHHHHHCCC--CccccCCCCccHHHH---HHHcC
Q 001365          689 EK--LQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGY----DWALEPTTVAGV--NINFRDVNGWTALHW---AAYCG  757 (1092)
Q Consensus       689 ~~--l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~----~~iVk~LL~~Ga--din~~D~~G~TpLH~---Aa~~G  757 (1092)
                      .+  ...-++++|+++|+++|.. ..|.||||+|+..++    .++|++||++|+  ++|.+|..|.||||.   |+..+
T Consensus       353 ~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n  431 (672)
T PHA02730        353 YGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNN  431 (672)
T ss_pred             cCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhcc
Confidence            22  3445899999999999985 799999999999885    899999999998  699999999999994   43332


Q ss_pred             ---------CHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCC-CCCcHH
Q 001365          758 ---------RERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKK-DGDVAE  827 (1092)
Q Consensus       758 ---------~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~-~G~ta~  827 (1092)
                               ..+++++|+.+||++|+      +|..|.||||+|+..++.+++++|+++|     ++++.+|. .|.++.
T Consensus       432 ~~~~~~e~~~~~ivk~LIs~GADINa------kD~~G~TPLh~Aa~~~~~eive~LI~~G-----AdIN~~d~~~g~TaL  500 (672)
T PHA02730        432 CGYHCYETILIDVFDILSKYMDDIDM------IDNENKTLLYYAVDVNNIQFARRLLEYG-----ASVNTTSRSIINTAI  500 (672)
T ss_pred             ccccccchhHHHHHHHHHhcccchhc------cCCCCCCHHHHHHHhCCHHHHHHHHHCC-----CCCCCCCCcCCcCHH
Confidence                     23579999999999988      8899999999999999999999999998     78999997 577775


Q ss_pred             HHh
Q 001365          828 VTG  830 (1092)
Q Consensus       828 iaa  830 (1092)
                      ..+
T Consensus       501 ~~A  503 (672)
T PHA02730        501 QKS  503 (672)
T ss_pred             HHH
Confidence            444

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=5.8e-27  Score=276.36  Aligned_cols=254  Identities=20%  Similarity=0.174  Sum_probs=204.7

Q ss_pred             CcCCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHh-----CCCCcccc
Q 001365          532 FLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRAS-----HIPDVDVA  606 (1092)
Q Consensus       532 fl~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~-----~Gadvna~  606 (1092)
                      .+.+..+.||||+||..++.|..++|++.|+++|  .++..|.+|+|.|+..|.  .+..++  .+.     .+..+|.-
T Consensus       148 nl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~--K~~~~~~~~iH~aa~s~s--~e~mEi--~l~~~g~~r~~~in~~  221 (929)
T KOG0510|consen  148 NLEDENGFTPLHLAARKNKVEAKKELINKGADPC--KSDIDGNFPIHEAARSGS--KECMEI--FLPEHGYERQTHINFD  221 (929)
T ss_pred             cccccCCCchhhHHHhcChHHHHHHHHhcCCCCC--cccCcCCchHHHHHHhcc--hhhhhh--hhccccchhhcccccc
Confidence            4455667899999999999998899999999866  777889999999999884  444443  333     56678888


Q ss_pred             cCCCCcHHhh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHH
Q 001365          607 DNCGDITSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEK  681 (1092)
Q Consensus       607 D~~G~TpL~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~  681 (1092)
                      ++.|.||||.    +++++.++++. +..+.....     +.......  -++..|++|.||||.++..|+..       
T Consensus       222 ~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~-----~~~~q~ke--lv~~~d~dg~tpLH~a~r~G~~~-------  287 (929)
T KOG0510|consen  222 NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQL-----DAMQQEKE--LVNDEDNDGCTPLHYAARQGGPE-------  287 (929)
T ss_pred             cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhh-----HHHHHHHH--HhhcccccCCchHHHHHHcCChh-------
Confidence            9999999995    66777666544 333322110     01111111  22445889999999999988875       


Q ss_pred             HHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHH-CC-CCccccCCCCccHHHHHHHcCCH
Q 001365          682 LVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTV-AG-VNINFRDVNGWTALHWAAYCGRE  759 (1092)
Q Consensus       682 lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~-~G-adin~~D~~G~TpLH~Aa~~G~~  759 (1092)
                                   .+..|+..|+++|.++.++.||||.||..|+..+|+-||+ .| ..+|..|-.|.||||+|+..||.
T Consensus       288 -------------svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~  354 (929)
T KOG0510|consen  288 -------------SVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHD  354 (929)
T ss_pred             -------------HHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHH
Confidence                         6778999999999999999999999999999999999999 44 55788999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH
Q 001365          760 RTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA  826 (1092)
Q Consensus       760 eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta  826 (1092)
                      .+|++||.+||..+...   ..|.+|.||||+|+..|+..+|++|+.+|     +++..+|+.|.++
T Consensus       355 ~v~qlLl~~GA~~~~~~---e~D~dg~TaLH~Aa~~g~~~av~~Li~~G-----a~I~~~n~~g~SA  413 (929)
T KOG0510|consen  355 RVVQLLLNKGALFLNMS---EADSDGNTALHLAAKYGNTSAVQKLISHG-----ADIGVKNKKGKSA  413 (929)
T ss_pred             HHHHHHHhcChhhhccc---ccccCCchhhhHHHHhccHHHHHHHHHcC-----Cceeecccccccc
Confidence            99999999999886311   25899999999999999999999999988     7899999999665

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.4e-26  Score=276.92  Aligned_cols=228  Identities=12%  Similarity=0.040  Sum_probs=187.3

Q ss_pred             CcccChHHHHHHHc-----CCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCC
Q 001365          535 SQQEAENCKWSCMF-----GEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNC  609 (1092)
Q Consensus       535 ~~~~~TpLH~A~~f-----G~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~  609 (1092)
                      +..+.||||+|+..     +..++++.|+++|+++|  ..+..|+||||+||.++. ......+++|++.|++++.+|..
T Consensus        68 d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN--~~d~~G~TpLh~a~~~~~-~~~~~iv~~Ll~~Gadvn~~d~~  144 (489)
T PHA02798         68 DNEYSTPLCTILSNIKDYKHMLDIVKILIENGADIN--KKNSDGETPLYCLLSNGY-INNLEILLFMIENGADTTLLDKD  144 (489)
T ss_pred             CCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCC--CCCCCcCcHHHHHHHcCC-cChHHHHHHHHHcCCCccccCCC
Confidence            35678999998864     77899999999999988  566679999999999864 23455667899999999999999


Q ss_pred             CCcHHhh----hH---HHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHH
Q 001365          610 GDITSEN----LR---MQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEK  681 (1092)
Q Consensus       610 G~TpL~~----~~---~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~  681 (1092)
                      |.||||.    ++   .+++++|+. |++++....                     ..+.+|||.++..+-..       
T Consensus       145 g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~---------------------~~~~t~Lh~~~~~~~~~-------  196 (489)
T PHA02798        145 GFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNN---------------------KEKYDTLHCYFKYNIDR-------  196 (489)
T ss_pred             CCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccC---------------------cCCCcHHHHHHHhcccc-------
Confidence            9999985    33   677777754 777654422                     46788998766532110       


Q ss_pred             HHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHH-------HHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHH
Q 001365          682 LVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLH-------FAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA  754 (1092)
Q Consensus       682 lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH-------~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa  754 (1092)
                               ...-+++.|+++|++++..+..|.|+++       ++...+...++.+|+. |+|+|.+|..|+||||+||
T Consensus       197 ---------~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~  266 (489)
T PHA02798        197 ---------IDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSV  266 (489)
T ss_pred             ---------CCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHH
Confidence                     0112788999999999999999999987       2445567888888766 6999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          755 YCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       755 ~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                      ..|+.++|++||++|||+|+      +|..|+||||+|+.+|+.++++.|++.++
T Consensus       267 ~~~~~~~v~~LL~~GAdin~------~d~~G~TpL~~A~~~~~~~iv~~lL~~~~  315 (489)
T PHA02798        267 SHNNRKIFEYLLQLGGDINI------ITELGNTCLFTAFENESKFIFNSILNKKP  315 (489)
T ss_pred             HcCcHHHHHHHHHcCCcccc------cCCCCCcHHHHHHHcCcHHHHHHHHccCC
Confidence            99999999999999999988      77999999999999999999999999884

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.3e-26  Score=275.43  Aligned_cols=224  Identities=13%  Similarity=-0.006  Sum_probs=184.3

Q ss_pred             cChHHHHHHHcC------CcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCc-ccccCCC
Q 001365          538 EAENCKWSCMFG------EIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDV-DVADNCG  610 (1092)
Q Consensus       538 ~~TpLH~A~~fG------~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadv-na~D~~G  610 (1092)
                      +.||||+|+..+      ..+++++||++|+++|  ..+..|.||||+|+.++. ...+..+++|+++|+++ +.+|..|
T Consensus        69 ~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin--~~d~~g~tpL~~a~~~~~-~~~~eiv~~Ll~~Gadin~~~d~~g  145 (494)
T PHA02989         69 IETPLCAVLRNREITSNKIKKIVKLLLKFGADIN--LKTFNGVSPIVCFIYNSN-INNCDMLRFLLSKGINVNDVKNSRG  145 (494)
T ss_pred             CCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCC--CCCCCCCcHHHHHHHhcc-cCcHHHHHHHHHCCCCcccccCCCC
Confidence            468999998765      4689999999999988  566779999999987653 23355567899999999 8899999


Q ss_pred             CcHHhh------hHHHHHHHHh-cCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHH
Q 001365          611 DITSEN------LRMQFGKLLC-LTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLV  683 (1092)
Q Consensus       611 ~TpL~~------~~~~lvkLLl-~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL  683 (1092)
                      .||||.      ++.+++++|+ .|++++...                     +..|.|||+.++..+...         
T Consensus       146 ~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~---------------------~~~g~tpL~~a~~~~~~~---------  195 (494)
T PHA02989        146 YNLLHMYLESFSVKKDVIKILLSFGVNLFEKT---------------------SLYGLTPMNIYLRNDIDV---------  195 (494)
T ss_pred             CCHHHHHHHhccCCHHHHHHHHHcCCCccccc---------------------cccCCChHHHHHhccccc---------
Confidence            999995      3567788774 577765421                     257889999876533110         


Q ss_pred             HHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcC------CHhHHHHHHHCCCCccccCCCCccHHHHHHHcC
Q 001365          684 QKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALG------YDWALEPTTVAGVNINFRDVNGWTALHWAAYCG  757 (1092)
Q Consensus       684 ~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G------~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G  757 (1092)
                             ...-++++|+++|+++|..|..|.||||.++..+      ..+++++|+ .|+++|.+|..|+||||+||..|
T Consensus       196 -------~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~-~~advn~~d~~G~TpL~~Aa~~~  267 (494)
T PHA02989        196 -------ISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFIL-KYIKINKKDKKGFNPLLISAKVD  267 (494)
T ss_pred             -------ccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHH-hCCCCCCCCCCCCCHHHHHHHhc
Confidence                   0112789999999999999999999999887654      467777665 47999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          758 RERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       758 ~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      +.++|++||++||++|+      +|..|+||||+|+..|+.+++++|++.+
T Consensus       268 ~~~~v~~LL~~Gadin~------~d~~G~TpL~~A~~~~~~~iv~~LL~~~  312 (494)
T PHA02989        268 NYEAFNYLLKLGDDIYN------VSKDGDTVLTYAIKHGNIDMLNRILQLK  312 (494)
T ss_pred             CHHHHHHHHHcCCCccc------cCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999999988      7799999999999999999999999976

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.94  E-value=3e-26  Score=273.24  Aligned_cols=235  Identities=17%  Similarity=0.087  Sum_probs=193.1

Q ss_pred             CCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchh------------------------
Q 001365          534 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSE------------------------  589 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~se------------------------  589 (1092)
                      .+..+.||||+||..|+.+++++|++.+.....    ..+.+||+.|+..++  .+                        
T Consensus        66 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~~l~~a~~~~~--~ei~~~Ll~~~~~~~~~~~~~~~~~~  139 (477)
T PHA02878         66 PDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV----FYTLVAIKDAFNNRN--VEIFKIILTNRYKNIQTIDLVYIDKK  139 (477)
T ss_pred             CCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc----ccchhhHHHHHHcCC--HHHHHHHHhCcccCcccCcHHHHhhc
Confidence            345688999999999999999999998875432    458899999998763  11                        


Q ss_pred             -------HHHHHHHHhCCCCcccccCC-CCcHHhh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhcc
Q 001365          590 -------VREFEYRASHIPDVDVADNC-GDITSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKD  656 (1092)
Q Consensus       590 -------Vv~fe~Ll~~Gadvna~D~~-G~TpL~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~  656 (1092)
                             ...+++|++.|++++..|.. |.||||.    ++.+++++|+. |++++..+                     
T Consensus       140 ~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d---------------------  198 (477)
T PHA02878        140 SKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPD---------------------  198 (477)
T ss_pred             cchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcC---------------------
Confidence                   22567889999999999988 9999995    66788887754 77665432                     


Q ss_pred             CCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHc-CCHhHHHHHHHC
Q 001365          657 ENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAAL-GYDWALEPTTVA  735 (1092)
Q Consensus       657 d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~-G~~~iVk~LL~~  735 (1092)
                       ..|+||||.|+..+...                    +++.|++.|+++|.+|..|.||||+|+.. ++.+++++|+++
T Consensus       199 -~~g~tpLh~A~~~~~~~--------------------iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~  257 (477)
T PHA02878        199 -KTNNSPLHHAVKHYNKP--------------------IVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEH  257 (477)
T ss_pred             -CCCCCHHHHHHHhCCHH--------------------HHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHc
Confidence             57899999988765532                    78889999999999999999999999976 789999999999


Q ss_pred             CCCccccCC-CCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcC-cHHHHHHHHHcCCCCCc
Q 001365          736 GVNINFRDV-NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIG-HKGIAGYLAESDLSSAL  813 (1092)
Q Consensus       736 Gadin~~D~-~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G-~~eiv~~LLe~Ga~~h~  813 (1092)
                      |+++|.++. .|+||||+|  .++.+++++|+++||++|+      +|..|.||||+|+..+ +.+++++|+..++....
T Consensus       258 gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~------~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~  329 (477)
T PHA02878        258 GVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINS------LNSYKLTPLSSAVKQYLCINIGRILISNICLLKR  329 (477)
T ss_pred             CCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCC------cCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHh
Confidence            999999986 799999999  5789999999999999988      7799999999999864 56788888876533333


Q ss_pred             ccCcccCCCCC
Q 001365          814 SAISLNKKDGD  824 (1092)
Q Consensus       814 adlnlkD~~G~  824 (1092)
                      .+.++++..|.
T Consensus       330 ~~~~~~~~~g~  340 (477)
T PHA02878        330 IKPDIKNSEGF  340 (477)
T ss_pred             ccCcccCcHHH
Confidence            45666666663

>PHA02791 ankyrin-like protein; Provisional

Probab=99.94  E-value=7.3e-26  Score=252.45  Aligned_cols=209  Identities=11%  Similarity=0.024  Sum_probs=170.0

Q ss_pred             cCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhhhHHHHHHHHhc
Q 001365          548 FGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRMQFGKLLCL  627 (1092)
Q Consensus       548 fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~~~~~lvkLLl~  627 (1092)
                      .+..+++.+|+++|++    ..|..|+||||+||.+|+  .+  .+++|+..|++++..+  |                 
T Consensus         9 ~~~~~~~~~Lis~~a~----~~D~~G~TpLh~Aa~~g~--~e--iv~~Ll~~ga~~n~~d--~-----------------   61 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF----KADVHGHSALYYAIADNN--VR--LVCTLLNAGALKNLLE--N-----------------   61 (284)
T ss_pred             cCHHHHHHHHHhCCCC----CCCCCCCcHHHHHHHcCC--HH--HHHHHHHCcCCCcCCC--C-----------------
Confidence            5778999999999985    457789999999999985  44  4467888888766542  2                 


Q ss_pred             CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCC
Q 001365          628 TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPC  707 (1092)
Q Consensus       628 gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN  707 (1092)
                                                       +||||.|+..+...                    ++++|+.+|+++|
T Consensus        62 ---------------------------------~TpLh~Aa~~g~~e--------------------iV~lLL~~Gadvn   88 (284)
T PHA02791         62 ---------------------------------EFPLHQAATLEDTK--------------------IVKILLFSGMDDS   88 (284)
T ss_pred             ---------------------------------CCHHHHHHHCCCHH--------------------HHHHHHHCCCCCC
Confidence                                             35555555544332                    7788999999999


Q ss_pred             cccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCc-cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC-CCC
Q 001365          708 VLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGW-TALHWAAYCGRERTVASLIALGAAPGALSDPTPKY-PSG  785 (1092)
Q Consensus       708 ~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~-TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D-~~G  785 (1092)
                      .+|..|+||||+||..|+.++|++|+++|++++.++..|+ ||||+||..|+.++|++||++|++.        .| ..|
T Consensus        89 ~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--------~d~~~g  160 (284)
T PHA02791         89 QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--------FDLAIL  160 (284)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--------cccccC
Confidence            9999999999999999999999999999999999999996 8999999999999999999987653        22 358


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH--HHHhh----hhhccccccCCCCCCCCC
Q 001365          786 RTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA--EVTGA----TAVQTVPQRCPTPVSDGD  849 (1092)
Q Consensus       786 ~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta--~iaa~----~~v~~l~~~~as~~s~~~  849 (1092)
                      .||||+|+.+|+.+++++|+++|     ++++.+|..|.++  ..++.    ..++.|...++..+..+.
T Consensus       161 ~TpLh~Aa~~g~~eiv~lLL~~g-----Ad~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        161 LSCIHITIKNGHVDMMILLLDYM-----TSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL  225 (284)
T ss_pred             ccHHHHHHHcCCHHHHHHHHHCC-----CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence            99999999999999999999998     7899999988654  33433    555666667776665433

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=2.4e-26  Score=267.90  Aligned_cols=209  Identities=23%  Similarity=0.281  Sum_probs=183.0

Q ss_pred             ChHHHHHHHcCCcHHHHHHHHC-CCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhhh
Q 001365          539 AENCKWSCMFGEIEVPAEIVAG-GVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENL  617 (1092)
Q Consensus       539 ~TpLH~A~~fG~veVv~~LL~~-Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~~  617 (1092)
                      +.....||..|+++.|+.|++. |..++  .+|..|.|+||+||.|+.    +...+||+++|+++|+.+-         
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~--~~D~~g~tlLHWAAiNNr----l~v~r~li~~gadvn~~gG---------  109 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVN--NPDREGVTLLHWAAINNR----LDVARYLISHGADVNAIGG---------  109 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCC--CCCcCCccceeHHHHcCc----HHHHHHHHHcCCCccccCC---------
Confidence            4578899999999999999999 88876  777789999999999985    5555799999999998731         


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHH
Q 001365          618 RMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQ  697 (1092)
Q Consensus       618 ~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~Lvk  697 (1092)
                                                              .-+.||||.|+..+++.                    ++.
T Consensus       110 ----------------------------------------~l~stPLHWAar~G~~~--------------------vv~  129 (600)
T KOG0509|consen  110 ----------------------------------------VLGSTPLHWAARNGHIS--------------------VVD  129 (600)
T ss_pred             ----------------------------------------CCCCCcchHHHHcCcHH--------------------HHH
Confidence                                                    23447888888877764                    788


Q ss_pred             HHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 001365          698 KAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSD  777 (1092)
Q Consensus       698 lLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D  777 (1092)
                      +|+++||||+.+|.+|.||||+||..|+.-+|-+||.+|+|+|.+|.+|+|||||||.+|+...+..||..|+.++..+ 
T Consensus       130 lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d-  208 (600)
T KOG0509|consen  130 LLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTD-  208 (600)
T ss_pred             HHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998843 


Q ss_pred             CCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH-HHHhhh
Q 001365          778 PTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA-EVTGAT  832 (1092)
Q Consensus       778 ~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta-~iaa~~  832 (1092)
                          |+.|.||||+|+..|+..++.+|++.|     ++.+..|.+|.++ .++.++
T Consensus       209 ----~~~g~TpLHwa~~~gN~~~v~Ll~~g~-----~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  209 ----DNHGNTPLHWAVVGGNLTAVKLLLEGG-----ADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ----cccCCchHHHHHhcCCcceEehhhhcC-----CcccccccCCCCHHHHHHHh
Confidence                489999999999999999999666666     7899999999555 555444

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.93  E-value=4.4e-25  Score=257.96  Aligned_cols=221  Identities=16%  Similarity=0.031  Sum_probs=185.6

Q ss_pred             CcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcc-cccCCCCcH
Q 001365          535 SQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVD-VADNCGDIT  613 (1092)
Q Consensus       535 ~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvn-a~D~~G~Tp  613 (1092)
                      ...+.||||+||.+|+.+++++|++.|++++.  .+..|.||||+|+..|+    +..+++|+..|++++ ..+..|.||
T Consensus        32 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~~~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~g~tp  105 (413)
T PHA02875         32 IYDGISPIKLAMKFRDSEAIKLLMKHGAIPDV--KYPDIESELHDAVEEGD----VKAVEELLDLGKFADDVFYKDGMTP  105 (413)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc--cCCCcccHHHHHHHCCC----HHHHHHHHHcCCcccccccCCCCCH
Confidence            34578999999999999999999999998763  44559999999999986    455678999998875 447789999


Q ss_pred             Hhh----hHHHHHHHHh-cCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHH
Q 001365          614 SEN----LRMQFGKLLC-LTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLK  688 (1092)
Q Consensus       614 L~~----~~~~lvkLLl-~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k  688 (1092)
                      ||.    ++.+++++|+ .|++++...                      ..|.||||.|+..+...              
T Consensus       106 L~~A~~~~~~~iv~~Ll~~gad~~~~~----------------------~~g~tpLh~A~~~~~~~--------------  149 (413)
T PHA02875        106 LHLATILKKLDIMKLLIARGADPDIPN----------------------TDKFSPLHLAVMMGDIK--------------  149 (413)
T ss_pred             HHHHHHhCCHHHHHHHHhCCCCCCCCC----------------------CCCCCHHHHHHHcCCHH--------------
Confidence            995    6678888875 477765432                      57899999998876543              


Q ss_pred             hhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCc-cHHHHHHHcCCHHHHHHHHH
Q 001365          689 EKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGW-TALHWAAYCGRERTVASLIA  767 (1092)
Q Consensus       689 ~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~-TpLH~Aa~~G~~eiV~~LLe  767 (1092)
                            +++.|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|. ||||+|+..|+.++|++|++
T Consensus       150 ------~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~  223 (413)
T PHA02875        150 ------GIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK  223 (413)
T ss_pred             ------HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence                  78889999999999999999999999999999999999999999999998874 89999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCCHHHHHHHc---CcHHHHHHHHH
Q 001365          768 LGAAPGALSDPTPKYPSGRTPADLASSI---GHKGIAGYLAE  806 (1092)
Q Consensus       768 ~GAdin~~~D~n~~D~~G~TPLhlAa~~---G~~eiv~~LLe  806 (1092)
                      +||++|.+.   ..+..|.|||++++..   ...+.++.|+.
T Consensus       224 ~gad~n~~~---~~~~~~~t~l~~~~~~~~~~~~~~~~~li~  262 (413)
T PHA02875        224 RGADCNIMF---MIEGEECTILDMICNMCTNLESEAIDALIA  262 (413)
T ss_pred             CCcCcchHh---hcCCCchHHHHHHHhhcCCcccHHHHHHHH
Confidence            999999843   3578899999987643   34566666663

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=1.8e-25  Score=263.92  Aligned_cols=277  Identities=17%  Similarity=0.119  Sum_probs=193.2

Q ss_pred             CcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHH
Q 001365          535 SQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITS  614 (1092)
Q Consensus       535 ~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL  614 (1092)
                      +..+.||||||+.....+.++.|++.|++..  ..+..+.+|||+|+..+.    ...+.+|++.|+++|..|..|.|||
T Consensus        85 D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~--~~n~~~~aplh~A~~~~~----~s~L~~Ll~~~~dvnl~de~~~TpL  158 (929)
T KOG0510|consen   85 DSADNTPLHAAVEYNQGDKIQVLLSYGADTP--LRNLNKNAPLHLAADSGN----YSCLKLLLDYGADVNLEDENGFTPL  158 (929)
T ss_pred             hcccCchhHHHhhcchHHHHHHHHhcCCCCC--hhhhhccCchhhccccch----HHHHHHHHHhcCCccccccCCCchh
Confidence            3446788888888888888888888888865  566678888888887653    4555678888888888888888888


Q ss_pred             hh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHH----H-------------HhhhhccCCCcchHHHHhhhhcC
Q 001365          615 EN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNS----K-------------ISSLLKDENDDWDLMLKLTAEEK  672 (1092)
Q Consensus       615 ~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~----~-------------I~~Ll~~d~~g~t~L~~a~~~~~  672 (1092)
                      |+    .+.+..++|+. ++++. +....+..+..+.+.    +             ...+.-.++++.+|||.|+..++
T Consensus       159 h~A~~~~~~E~~k~Li~~~a~~~-K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~  237 (929)
T KOG0510|consen  159 HLAARKNKVEAKKELINKGADPC-KSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGD  237 (929)
T ss_pred             hHHHhcChHHHHHHHHhcCCCCC-cccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCC
Confidence            85    56666666655 45443 333233333222211    1             11111125678888988887776


Q ss_pred             CChHHHHHHHHHHHHHhhhHHHHHH--HHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHH
Q 001365          673 FSSEEVKEKLVQKLLKEKLQVWLVQ--KAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTAL  750 (1092)
Q Consensus       673 ~s~~~~~~~lL~~a~k~~l~~~Lvk--lLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpL  750 (1092)
                      +..       +...+........++  ......--+|..|.+|.||||+||..|+.+.|..|+..|++++.++.++.|||
T Consensus       238 ~e~-------lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spL  310 (929)
T KOG0510|consen  238 IEM-------LKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPL  310 (929)
T ss_pred             HHH-------HHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCch
Confidence            532       111111111000000  00000112566899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH-HHH
Q 001365          751 HWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA-EVT  829 (1092)
Q Consensus       751 H~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta-~ia  829 (1092)
                      |.||..|+..+|+-||+ -.+.-.   .|..|-.|.||||+|+..||..++++|+++|+.-+-  ..-.|.+|.|+ ..+
T Consensus       311 H~AA~yg~~ntv~rLL~-~~~~rl---lne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~--~~e~D~dg~TaLH~A  384 (929)
T KOG0510|consen  311 HFAAIYGRINTVERLLQ-ESDTRL---LNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLN--MSEADSDGNTALHLA  384 (929)
T ss_pred             HHHHHcccHHHHHHHHh-CcCccc---cccccccCCCchhhhhhcCHHHHHHHHHhcChhhhc--ccccccCCchhhhHH
Confidence            99999999999999998 222222   455899999999999999999999999999954221  01338899665 444


Q ss_pred             hh
Q 001365          830 GA  831 (1092)
Q Consensus       830 a~  831 (1092)
                      +.
T Consensus       385 a~  386 (929)
T KOG0510|consen  385 AK  386 (929)
T ss_pred             HH
Confidence            43

>PHA02798 ankyrin-like protein; Provisional

Probab=99.93  E-value=1e-24  Score=260.97  Aligned_cols=240  Identities=11%  Similarity=0.013  Sum_probs=193.2

Q ss_pred             cChHHHHH--HHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCC-chhHHHHHHHHhCCCCcccccCCCCcHH
Q 001365          538 EAENCKWS--CMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLS-CSEVREFEYRASHIPDVDVADNCGDITS  614 (1092)
Q Consensus       538 ~~TpLH~A--~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~-~seVv~fe~Ll~~Gadvna~D~~G~TpL  614 (1092)
                      +.|+++.+  +..++.+++++|+++|+++|  ..+..|.||||+|+.+... ...+..+++|+++|+++|.+|..|.|||
T Consensus        36 ~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn--~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpL  113 (489)
T PHA02798         36 EYSIFQKYLQRDSPSTDIVKLFINLGANVN--GLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPL  113 (489)
T ss_pred             cchHHHHHHhCCCCCHHHHHHHHHCCCCCC--CCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHH
Confidence            34565533  44557899999999999988  5667899999999865100 0125556889999999999999999999


Q ss_pred             hhh-------HHHHHHHHh-cCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHH
Q 001365          615 ENL-------RMQFGKLLC-LTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKL  686 (1092)
Q Consensus       615 ~~~-------~~~lvkLLl-~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a  686 (1092)
                      |..       +.+++++|+ .|++++..+                      ..|+||||.++..+...            
T Consensus       114 h~a~~~~~~~~~~iv~~Ll~~Gadvn~~d----------------------~~g~tpL~~a~~~~~~~------------  159 (489)
T PHA02798        114 YCLLSNGYINNLEILLFMIENGADTTLLD----------------------KDGFTMLQVYLQSNHHI------------  159 (489)
T ss_pred             HHHHHcCCcChHHHHHHHHHcCCCccccC----------------------CCCCcHHHHHHHcCCcc------------
Confidence            952       567777774 588776543                      58999999988765411            


Q ss_pred             HHhhhHHHHHHHHHhCCCCCCccc-CCCCcHHHHHHHc----CCHhHHHHHHHCCCCccccCCCCccHHH-------HHH
Q 001365          687 LKEKLQVWLVQKAAEGGKGPCVLD-HCGQGVLHFAAAL----GYDWALEPTTVAGVNINFRDVNGWTALH-------WAA  754 (1092)
Q Consensus       687 ~k~~l~~~LvklLle~GadvN~~D-~~G~TpLH~AA~~----G~~~iVk~LL~~Gadin~~D~~G~TpLH-------~Aa  754 (1092)
                           ...++++|+++|+++|..+ ..|.||||.++..    ++.+++++|+++|++++..+..|.|+++       ++.
T Consensus       160 -----~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~  234 (489)
T PHA02798        160 -----DIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDN  234 (489)
T ss_pred             -----hHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhc
Confidence                 0127889999999999985 5799999999764    4799999999999999999999999987       345


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          755 YCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       755 ~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      ..++.+++.+|+. |+++|.      +|..|+||||+|+..|+.+++++|+++|     +|++++|..|.||...+
T Consensus       235 ~~~~~~i~~~l~~-~~dvN~------~d~~G~TPL~~A~~~~~~~~v~~LL~~G-----Adin~~d~~G~TpL~~A  298 (489)
T PHA02798        235 KRFKKNILDFIFS-YIDINQ------VDELGFNPLYYSVSHNNRKIFEYLLQLG-----GDINIITELGNTCLFTA  298 (489)
T ss_pred             ccchHHHHHHHHh-cCCCCC------cCcCCccHHHHHHHcCcHHHHHHHHHcC-----CcccccCCCCCcHHHHH
Confidence            5678889988775 688877      8899999999999999999999999999     78999999997775444

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.93  E-value=4.7e-26  Score=283.64  Aligned_cols=256  Identities=18%  Similarity=0.141  Sum_probs=184.7

Q ss_pred             ccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh
Q 001365          537 QEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN  616 (1092)
Q Consensus       537 ~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~  616 (1092)
                      ++.||+|+||..|.++++.+++..|++.|  ...+.|.||||+|+..++  ..++  +.+++.|++.+..+..|.||+|.
T Consensus       373 k~~~pl~la~~~g~~~~v~Lll~~ga~~~--~~gk~gvTplh~aa~~~~--~~~v--~l~l~~gA~~~~~~~lG~T~lhv  446 (1143)
T KOG4177|consen  373 KGFTPLHLAVKSGRVSVVELLLEAGADPN--SAGKNGVTPLHVAAHYGN--PRVV--KLLLKRGASPNAKAKLGYTPLHV  446 (1143)
T ss_pred             cCCcchhhhcccCchhHHHhhhhccCCcc--cCCCCCcceeeehhhccC--cceE--EEEeccCCChhhHhhcCCChhhh
Confidence            45567777777777777777777777644  444557777777766653  2222  45566677777777777777763


Q ss_pred             ----h-HHHHHHHH-hcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHH-------------
Q 001365          617 ----L-RMQFGKLL-CLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEE-------------  677 (1092)
Q Consensus       617 ----~-~~~lvkLL-l~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~-------------  677 (1092)
                          + ....+.++ ..+++.+...                      ..|+|+||.+...++.+...             
T Consensus       447 aa~~g~~~~~~~~l~~~g~~~n~~s----------------------~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~  504 (1143)
T KOG4177|consen  447 AAKKGRYLQIARLLLQYGADPNAVS----------------------KQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDA  504 (1143)
T ss_pred             hhhcccHhhhhhhHhhcCCCcchhc----------------------cccCcchhhhhccCCchHHHHhhhcCCccCccc
Confidence                3 33444443 3355554432                      24445554444444333211             


Q ss_pred             -HHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHc
Q 001365          678 -VKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYC  756 (1092)
Q Consensus       678 -~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~  756 (1092)
                       .....++.+...... -..+.++++|++++.++..|.||||.||..|+..+|++||++|+|++++|+.|+||||.||..
T Consensus       505 ~~~l~~lhla~~~~~v-~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~  583 (1143)
T KOG4177|consen  505 KKGLTPLHLAADEDTV-KVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQ  583 (1143)
T ss_pred             hhccchhhhhhhhhhH-HHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHc
Confidence             111123333322222 267788999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHH
Q 001365          757 GRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAE  827 (1092)
Q Consensus       757 G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~  827 (1092)
                      |+.+|+.+|+++||++|+      .|.+|.||||+|+..|+.+++++|+..+.++...+....+..|.++.
T Consensus       584 G~~~i~~LLlk~GA~vna------~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~  648 (1143)
T KOG4177|consen  584 GHNDIAELLLKHGASVNA------ADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPE  648 (1143)
T ss_pred             ChHHHHHHHHHcCCCCCc------ccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChh
Confidence            999999999999999998      78999999999999999999999999997664444667777886663

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.92  E-value=9.9e-25  Score=254.47  Aligned_cols=181  Identities=21%  Similarity=0.261  Sum_probs=156.4

Q ss_pred             CCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcH
Q 001365          534 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDIT  613 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~Tp  613 (1092)
                      .+.++.|+|||||+++.++|+++||++|+++|...- .-|-||||+||.+|+    +..+.+|+++||+++.+|.+|.++
T Consensus        74 ~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG-~l~stPLHWAar~G~----~~vv~lLlqhGAdpt~~D~~G~~~  148 (600)
T KOG0509|consen   74 PDREGVTLLHWAAINNRLDVARYLISHGADVNAIGG-VLGSTPLHWAARNGH----ISVVDLLLQHGADPTLKDKQGLTP  148 (600)
T ss_pred             CCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCC-CCCCCcchHHHHcCc----HHHHHHHHHcCCCCceecCCCCcH
Confidence            345789999999999999999999999999995443 558999999999997    666678999999999998777766


Q ss_pred             HhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHH
Q 001365          614 SENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQV  693 (1092)
Q Consensus       614 L~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~  693 (1092)
                      +|                                                  .|+..+++.                   
T Consensus       149 lH--------------------------------------------------la~~~~~~~-------------------  159 (600)
T KOG0509|consen  149 LH--------------------------------------------------LAAQFGHTA-------------------  159 (600)
T ss_pred             HH--------------------------------------------------HHHHhCchH-------------------
Confidence            66                                                  344444332                   


Q ss_pred             HHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccC-CCCccHHHHHHHcCCHHHHHHHHHcCCCC
Q 001365          694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRD-VNGWTALHWAAYCGRERTVASLIALGAAP  772 (1092)
Q Consensus       694 ~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D-~~G~TpLH~Aa~~G~~eiV~~LLe~GAdi  772 (1092)
                       ++-+|+.+|+++|.+|.+|+|||||||..|+...+..||..|++++.+| ..|.||||||+..|+..+|.+|++.|++.
T Consensus       160 -~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~  238 (600)
T KOG0509|consen  160 -LVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADL  238 (600)
T ss_pred             -HHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcc
Confidence             5566788889999999999999999999999888999999999999998 89999999999999999999777778887


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHc
Q 001365          773 GALSDPTPKYPSGRTPADLASSI  795 (1092)
Q Consensus       773 n~~~D~n~~D~~G~TPLhlAa~~  795 (1092)
                      +.      .|.+|.||+++|...
T Consensus       239 d~------~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  239 DK------TNTNGKTPFDLAQER  255 (600)
T ss_pred             cc------cccCCCCHHHHHHHh
Confidence            76      678899999999877

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.92  E-value=6e-25  Score=273.86  Aligned_cols=257  Identities=20%  Similarity=0.181  Sum_probs=207.5

Q ss_pred             CcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHH
Q 001365          535 SQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITS  614 (1092)
Q Consensus       535 ~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL  614 (1092)
                      ...+.||||+++..|+.++..+|...+....  ..++.|.||+|+||..|.    +..+++++..|+++|.....|.||+
T Consensus       338 r~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~--~a~~k~~~pl~la~~~g~----~~~v~Lll~~ga~~~~~gk~gvTpl  411 (1143)
T KOG4177|consen  338 RTAGYTPLHLAAKEGQVEVAGALLEHGAQRR--QAEEKGFTPLHLAVKSGR----VSVVELLLEAGADPNSAGKNGVTPL  411 (1143)
T ss_pred             CcCCcccccHhhhhhhHHHHHHhhccccccC--cccccCCcchhhhcccCc----hhHHHhhhhccCCcccCCCCCccee
Confidence            3457899999999999998888888877643  557889999999999885    4444688999999999999999999


Q ss_pred             hh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCC-hH------------
Q 001365          615 EN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFS-SE------------  676 (1092)
Q Consensus       615 ~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s-~~------------  676 (1092)
                      |.    ++.++++++.. +++.+.+.                      ..|.|++|.++..+... ..            
T Consensus       412 h~aa~~~~~~~v~l~l~~gA~~~~~~----------------------~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~  469 (1143)
T KOG4177|consen  412 HVAAHYGNPRVVKLLLKRGASPNAKA----------------------KLGYTPLHVAAKKGRYLQIARLLLQYGADPNA  469 (1143)
T ss_pred             eehhhccCcceEEEEeccCCChhhHh----------------------hcCCChhhhhhhcccHhhhhhhHhhcCCCcch
Confidence            84    67788877755 77776543                      34567777766655211 00            


Q ss_pred             --HHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHH
Q 001365          677 --EVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA  754 (1092)
Q Consensus       677 --~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa  754 (1092)
                        ...-+.|+.+...+..+ ++..|++.++..+.....|-|+||+|+..++..+++.++++|++++.++..|.||||.||
T Consensus       470 ~s~~G~T~Lhlaaq~Gh~~-~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~  548 (1143)
T KOG4177|consen  470 VSKQGFTPLHLAAQEGHTE-VVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAV  548 (1143)
T ss_pred             hccccCcchhhhhccCCch-HHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHH
Confidence              00011244444443333 677788888888888888899999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHhh
Q 001365          755 YCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGA  831 (1092)
Q Consensus       755 ~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa~  831 (1092)
                      ..|+..+|++||++||++++      +|+.|+||||.||..|+.+|+.+|+++|     +++|..|.+|.|+..++.
T Consensus       549 ~~g~v~~VkfLLe~gAdv~a------k~~~G~TPLH~Aa~~G~~~i~~LLlk~G-----A~vna~d~~g~TpL~iA~  614 (1143)
T KOG4177|consen  549 HYGNVDLVKFLLEHGADVNA------KDKLGYTPLHQAAQQGHNDIAELLLKHG-----ASVNAADLDGFTPLHIAV  614 (1143)
T ss_pred             hcCCchHHHHhhhCCccccc------cCCCCCChhhHHHHcChHHHHHHHHHcC-----CCCCcccccCcchhHHHH
Confidence            99999999999999999988      7899999999999999999999999999     789999999977755543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.3e-23  Score=258.40  Aligned_cols=281  Identities=11%  Similarity=-0.034  Sum_probs=191.8

Q ss_pred             CcccChHHHHHH--HcCCcHHHHHHHHCCCCCCCCCC-CCCC-----------chHHHHHHHcCC-------CchhHHHH
Q 001365          535 SQQEAENCKWSC--MFGEIEVPAEIVAGGVLRCHTSS-QKVG-----------RVPFYVTCSNRL-------SCSEVREF  593 (1092)
Q Consensus       535 ~~~~~TpLH~A~--~fG~veVv~~LL~~Gadin~~~~-d~~G-----------~TPLHlAa~ng~-------~~seVv~f  593 (1092)
                      +..+.||||+|+  ..|+.+|+++||++|++++.... +..|           .||||+|+..+.       ....+..+
T Consensus       133 d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv  212 (661)
T PHA02917        133 CENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVV  212 (661)
T ss_pred             CCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHH
Confidence            456899999654  57899999999999999874321 2334           599999986210       01124455


Q ss_pred             HHHHhCCCCcccccCCCCcHHhh----hH--HHHHHHHhcCCCCCCCCC---CCCch-hhHHH------------HHHHh
Q 001365          594 EYRASHIPDVDVADNCGDITSEN----LR--MQFGKLLCLTSVSTPNYD---PSNLS-DISQL------------NSKIS  651 (1092)
Q Consensus       594 e~Ll~~Gadvna~D~~G~TpL~~----~~--~~lvkLLl~gadv~~~~~---~~~~~-~~~~l------------l~~I~  651 (1092)
                      ++|+..|+++|.+|..|.||||+    ++  .+++++|..|++++....   ..+.. .....            ...+.
T Consensus       213 ~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv  292 (661)
T PHA02917        213 KCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLV  292 (661)
T ss_pred             HHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCcccccccccCcccccchHHHHHHHhhccccccchHHHH
Confidence            79999999999999999999996    44  479999988887653211   01110 01111            11222


Q ss_pred             hhhccCC--CcchHHHHhhhhcCCChH------HHHHHHHHHHH----HhhhHHHHHHHHHhCCCCCCcccCCCCcHHHH
Q 001365          652 SLLKDEN--DDWDLMLKLTAEEKFSSE------EVKEKLVQKLL----KEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHF  719 (1092)
Q Consensus       652 ~Ll~~d~--~g~t~L~~a~~~~~~s~~------~~~~~lL~~a~----k~~l~~~LvklLle~GadvN~~D~~G~TpLH~  719 (1092)
                      .++....  .+.++++.+...+.....      ...+.+++.+.    ......-++++|+++|+++|.++..|.|+.  
T Consensus       293 ~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~--  370 (661)
T PHA02917        293 KLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRN--  370 (661)
T ss_pred             HHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchh--
Confidence            2222111  122333332222221110      00111222222    122223488999999999999999998854  


Q ss_pred             HHHcCCHhHHHHHHH-CCCCccccCCCCccHHHHHHHcC-----------------------CHHHHHHHHHcCCCCCCC
Q 001365          720 AAALGYDWALEPTTV-AGVNINFRDVNGWTALHWAAYCG-----------------------RERTVASLIALGAAPGAL  775 (1092)
Q Consensus       720 AA~~G~~~iVk~LL~-~Gadin~~D~~G~TpLH~Aa~~G-----------------------~~eiV~~LLe~GAdin~~  775 (1092)
                        .....+++++||. .|++++.++.+|+||||.||+.+                       ..++|++|+.+||++|. 
T Consensus       371 --~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~-  447 (661)
T PHA02917        371 --INIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINM-  447 (661)
T ss_pred             --hcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCC-
Confidence              3566778888887 69998888888999999998543                       35678999999999988 


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          776 SDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       776 ~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                           +|..|+||||+|+..++.+++++|+++|     ++++.+|..|.|+...+
T Consensus       448 -----kd~~G~TpLh~Aa~~~~~~~v~~Ll~~G-----Adin~~d~~G~T~L~~A  492 (661)
T PHA02917        448 -----IDKRGETLLHKAVRYNKQSLVSLLLESG-----SDVNIRSNNGYTCIAIA  492 (661)
T ss_pred             -----CCCCCcCHHHHHHHcCCHHHHHHHHHCc-----CCCCCCCCCCCCHHHHH
Confidence                 7899999999999999999999999998     78999999997775544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=6.7e-24  Score=226.92  Aligned_cols=179  Identities=13%  Similarity=0.063  Sum_probs=147.6

Q ss_pred             cChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCccccc-CCCCcHHhh
Q 001365          538 EAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVAD-NCGDITSEN  616 (1092)
Q Consensus       538 ~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D-~~G~TpL~~  616 (1092)
                      ..||||+|+..|++++|+.|++.+   +  ..+..|.||||+|+.++.  ..+..+++|++.|+++|.++ ..|.||||+
T Consensus        21 ~~~pL~~A~~~~~~~~vk~Li~~~---n--~~~~~g~TpLh~a~~~~~--~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~   93 (209)
T PHA02859         21 YCNPLFYYVEKDDIEGVKKWIKFV---N--DCNDLYETPIFSCLEKDK--VNVEILKFLIENGADVNFKTRDNNLSALHH   93 (209)
T ss_pred             cCcHHHHHHHhCcHHHHHHHHHhh---h--ccCccCCCHHHHHHHcCC--CCHHHHHHHHHCCCCCCccCCCCCCCHHHH
Confidence            468999999999999999999763   2  456779999999998763  23555678999999999886 467777773


Q ss_pred             hHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHH
Q 001365          617 LRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLV  696 (1092)
Q Consensus       617 ~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~Lv  696 (1092)
                                                                        ++..+...                 ..-++
T Consensus        94 --------------------------------------------------a~~~~~~~-----------------~~eiv  106 (209)
T PHA02859         94 --------------------------------------------------YLSFNKNV-----------------EPEIL  106 (209)
T ss_pred             --------------------------------------------------HHHhCccc-----------------cHHHH
Confidence                                                              11100000                 00167


Q ss_pred             HHHHhCCCCCCcccCCCCcHHHHHHH--cCCHhHHHHHHHCCCCccccCCCCccHHHH-HHHcCCHHHHHHHHHcCCCCC
Q 001365          697 QKAAEGGKGPCVLDHCGQGVLHFAAA--LGYDWALEPTTVAGVNINFRDVNGWTALHW-AAYCGRERTVASLIALGAAPG  773 (1092)
Q Consensus       697 klLle~GadvN~~D~~G~TpLH~AA~--~G~~~iVk~LL~~Gadin~~D~~G~TpLH~-Aa~~G~~eiV~~LLe~GAdin  773 (1092)
                      ++|+++|+++|.+|..|.||||+|+.  .++.+++++|+++|++++.+|..|.||||. |+..|+.++|++|+++|++++
T Consensus       107 ~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~  186 (209)
T PHA02859        107 KILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDIN  186 (209)
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence            88999999999999999999999986  468999999999999999999999999995 567889999999999999988


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcC
Q 001365          774 ALSDPTPKYPSGRTPADLASSIG  796 (1092)
Q Consensus       774 ~~~D~n~~D~~G~TPLhlAa~~G  796 (1092)
                      .      +|..|+||||+|..++
T Consensus       187 ~------~d~~g~tpl~la~~~~  203 (209)
T PHA02859        187 E------TNKSGYNCYDLIKFRN  203 (209)
T ss_pred             C------CCCCCCCHHHHHhhhh
Confidence            7      7899999999998765

>PHA02917 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.3e-23  Score=258.52  Aligned_cols=220  Identities=14%  Similarity=0.033  Sum_probs=163.5

Q ss_pred             cHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh----hHH----HHH
Q 001365          551 IEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN----LRM----QFG  622 (1092)
Q Consensus       551 veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~----~~~----~lv  622 (1092)
                      ++.++.|+.+|+.++  ..|..|+||||+||.+++ +.....+++|++.|++++..+..|.||||.    ++.    +++
T Consensus        12 ~~~~~~l~~~~~~~~--~~d~~g~t~Lh~a~~~~~-~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~   88 (661)
T PHA02917         12 LDELKQMLRDRDPND--TRNQFKNNALHAYLFNEH-CNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIA   88 (661)
T ss_pred             HHHHHHHHhccCccc--ccCCCCCcHHHHHHHhhh-cCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHH
Confidence            467888888888765  567789999999877743 333555678899999999999999999994    332    344


Q ss_pred             HHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 001365          623 KLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAE  701 (1092)
Q Consensus       623 kLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle  701 (1092)
                      .+|+. ++..+..                        +...+++.++..++.                    -++++|++
T Consensus        89 ~~Ll~~~~~~n~~------------------------~~~~~~~~a~~~~~~--------------------e~vk~Ll~  124 (661)
T PHA02917         89 MALLEATGYSNIN------------------------DFNIFSYMKSKNVDV--------------------DLIKVLVE  124 (661)
T ss_pred             HHHHhccCCCCCC------------------------CcchHHHHHhhcCCH--------------------HHHHHHHH
Confidence            55543 3322211                        111233333333332                    28899999


Q ss_pred             CCCCCCcccCCCCcHHHHHH--HcCCHhHHHHHHHCCCCccccCC---CC-----------ccHHHHHHH----------
Q 001365          702 GGKGPCVLDHCGQGVLHFAA--ALGYDWALEPTTVAGVNINFRDV---NG-----------WTALHWAAY----------  755 (1092)
Q Consensus       702 ~GadvN~~D~~G~TpLH~AA--~~G~~~iVk~LL~~Gadin~~D~---~G-----------~TpLH~Aa~----------  755 (1092)
                      +|+++|.+|..|+||||+|+  ..|+.++|++||++||++|.+|.   .|           .||||+|+.          
T Consensus       125 ~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~  204 (661)
T PHA02917        125 HGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTR  204 (661)
T ss_pred             cCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhccccccccc
Confidence            99999999999999999654  47899999999999999987654   34           599999986          


Q ss_pred             -cCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcH--HHHHHHHHcCCCCCcccCcccCCCCCc
Q 001365          756 -CGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHK--GIAGYLAESDLSSALSAISLNKKDGDV  825 (1092)
Q Consensus       756 -~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~--eiv~~LLe~Ga~~h~adlnlkD~~G~t  825 (1092)
                       .|+.++|++|+++||++|.      +|..|+||||+|+.+|+.  ++|++|++ |+... +...+.|..|.+
T Consensus       205 ~~~~~eiv~~Li~~Gadvn~------~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~-~~~~~~~~~~~~  269 (661)
T PHA02917        205 AYVRPEVVKCLINHGIKPSS------IDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNT-AYSYIDDLTCCT  269 (661)
T ss_pred             ccCcHHHHHHHHHCCCCccc------CCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccc-ccccccCccccc
Confidence             5689999999999999988      789999999999999985  79999985 73211 112345556643

>PHA02730 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.4e-22  Score=245.07  Aligned_cols=264  Identities=9%  Similarity=-0.031  Sum_probs=175.8

Q ss_pred             ccChHHHHHHHcCCcHHHHHHHHCCCCCC-C----CCCCCCCc-hHHHHHHHcCC--CchhHHHHHHHHhCCCCcccccC
Q 001365          537 QEAENCKWSCMFGEIEVPAEIVAGGVLRC-H----TSSQKVGR-VPFYVTCSNRL--SCSEVREFEYRASHIPDVDVADN  608 (1092)
Q Consensus       537 ~~~TpLH~A~~fG~veVv~~LL~~Gadin-~----~~~d~~G~-TPLHlAa~ng~--~~seVv~fe~Ll~~Gadvna~D~  608 (1092)
                      .+.+|+++|...|++|||++||++|++++ +    ...+.++. |.||++.-.+.  .......+++|+++|+++|.+|.
T Consensus       154 ~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~  233 (672)
T PHA02730        154 LGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDE  233 (672)
T ss_pred             cchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCC
Confidence            45789999999999999999999999985 2    12344455 45554443310  01224445789999999999999


Q ss_pred             CCCcHHhh------hHHHHHHHHhc---------------------------------CCCCCCCCC-CCCchhhHHHHH
Q 001365          609 CGDITSEN------LRMQFGKLLCL---------------------------------TSVSTPNYD-PSNLSDISQLNS  648 (1092)
Q Consensus       609 ~G~TpL~~------~~~~lvkLLl~---------------------------------gadv~~~~~-~~~~~~~~~ll~  648 (1092)
                      .|.||||+      ++.+++++|+.                                 |++...... .++......++.
T Consensus       234 ~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  313 (672)
T PHA02730        234 GGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMR  313 (672)
T ss_pred             CCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhh
Confidence            99999983      34788888876                                 222211000 000000000000


Q ss_pred             HHhhhhccCCCcch---------------------HHHHhhhhc--------------CCCh--HHHHHHHHHHHHHhhh
Q 001365          649 KISSLLKDENDDWD---------------------LMLKLTAEE--------------KFSS--EEVKEKLVQKLLKEKL  691 (1092)
Q Consensus       649 ~I~~Ll~~d~~g~t---------------------~L~~a~~~~--------------~~s~--~~~~~~lL~~a~k~~l  691 (1092)
                         ++...+..|..                     .|+..+..+              +.+.  .....+.||.++....
T Consensus       314 ---~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k~~G~TpLH~Aa~~nn  390 (672)
T PHA02730        314 ---SITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKTTDNNYPLHDYFVNNN  390 (672)
T ss_pred             ---ccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcCCCCCcHHHHHHHHcC
Confidence               00000111111                     122222211              1110  0111234554444332


Q ss_pred             ---HHHHHHHHHhCCC--CCCcccCCCCcHHHH---HHHcC---------CHhHHHHHHHCCCCccccCCCCccHHHHHH
Q 001365          692 ---QVWLVQKAAEGGK--GPCVLDHCGQGVLHF---AAALG---------YDWALEPTTVAGVNINFRDVNGWTALHWAA  754 (1092)
Q Consensus       692 ---~~~LvklLle~Ga--dvN~~D~~G~TpLH~---AA~~G---------~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa  754 (1092)
                         ..-++++|+.+|+  ++|.+|..|.||||.   |+..+         ..+++++|+.+|+++|.+|..|+||||+|+
T Consensus       391 n~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa  470 (672)
T PHA02730        391 NIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAV  470 (672)
T ss_pred             CcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHH
Confidence               1338999999998  699999999999994   33332         235699999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCCC-CCCCHHHHHHHc--CcHHHHHHHHHcCC
Q 001365          755 YCGRERTVASLIALGAAPGALSDPTPKYP-SGRTPADLASSI--GHKGIAGYLAESDL  809 (1092)
Q Consensus       755 ~~G~~eiV~~LLe~GAdin~~~D~n~~D~-~G~TPLhlAa~~--G~~eiv~~LLe~Ga  809 (1092)
                      ..++.++|++|+++||++|+      +|. .|.||||+|+..  |+.+++++|+++|+
T Consensus       471 ~~~~~eive~LI~~GAdIN~------~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga  522 (672)
T PHA02730        471 DVNNIQFARRLLEYGASVNT------TSRSIINTAIQKSSYRRENKTKLVDLLLSYHP  522 (672)
T ss_pred             HhCCHHHHHHHHHCCCCCCC------CCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCC
Confidence            99999999999999999988      565 599999999974  79999999999984

>PHA02792 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.3e-22  Score=243.16  Aligned_cols=291  Identities=12%  Similarity=0.065  Sum_probs=202.8

Q ss_pred             CCeeEEEEecCcC---CcccChHHHHHHH-cCCcHHHHHHHHCCCCCCCC------------------------------
Q 001365          522 SEVKVLITGRFLM---SQQEAENCKWSCM-FGEIEVPAEIVAGGVLRCHT------------------------------  567 (1092)
Q Consensus       522 ~~tKVlI~G~fl~---~~~~~TpLH~A~~-fG~veVv~~LL~~Gadin~~------------------------------  567 (1092)
                      +-+|+||..++..   +..+.|++|+|+. .|+.||+++||+.|+++|..                              
T Consensus        86 Elvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (631)
T PHA02792         86 ELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYD  165 (631)
T ss_pred             HHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccc
Confidence            4456666554432   3346789999965 69999999999999985520                              


Q ss_pred             ----CCCCCCchHHHHHHHcC---CCchhHHHHHHHHhCCCCcccccCCCCcHHhh----h--HHHHHHHHhcCCCCCCC
Q 001365          568 ----SSQKVGRVPFYVTCSNR---LSCSEVREFEYRASHIPDVDVADNCGDITSEN----L--RMQFGKLLCLTSVSTPN  634 (1092)
Q Consensus       568 ----~~d~~G~TPLHlAa~ng---~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~----~--~~~lvkLLl~gadv~~~  634 (1092)
                          -.+..|.||||+|+.++   ..|.....+++|+++|++++..|..|.||||+    .  ..+++++|..++.....
T Consensus       166 ~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~  245 (631)
T PHA02792        166 YTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNE  245 (631)
T ss_pred             cccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccc
Confidence                22456999999999987   22223444578999999999999999999995    3  56788999876554321


Q ss_pred             CCCCCchhhHHHHH------------HHhhhhccCCCcchHHHHhh---hhcCC-C-----hHHHHHHHHHHHHHhh-hH
Q 001365          635 YDPSNLSDISQLNS------------KISSLLKDENDDWDLMLKLT---AEEKF-S-----SEEVKEKLVQKLLKEK-LQ  692 (1092)
Q Consensus       635 ~~~~~~~~~~~ll~------------~I~~Ll~~d~~g~t~L~~a~---~~~~~-s-----~~~~~~~lL~~a~k~~-l~  692 (1092)
                      .    ..-+..++.            .+..++.....-. .++.++   ..... .     ..+....+|+.-+... ..
T Consensus       246 ~----~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~  320 (631)
T PHA02792        246 L----MNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTF-YILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVY  320 (631)
T ss_pred             h----HhHHHHHHHHHhccCccCccHHHHHHHHhCCCcc-chhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCcc
Confidence            1    111111111            1111111111100 111111   11100 0     0112223344444433 34


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCC--ccHHHHHHHcCCHH---HHHHHHH
Q 001365          693 VWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNG--WTALHWAAYCGRER---TVASLIA  767 (1092)
Q Consensus       693 ~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G--~TpLH~Aa~~G~~e---iV~~LLe  767 (1092)
                      ..++++|+++|++++ + ..+..++|.||..|+.++|++|+++|||++.+|.+|  .||||+|+..+..+   ++++|++
T Consensus       321 ieiIK~LId~Ga~~~-r-~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs  398 (631)
T PHA02792        321 INVIKCMIDEGATLY-R-FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP  398 (631)
T ss_pred             HHHHHHHHHCCCccc-c-CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh
Confidence            458999999999975 2 235678999999999999999999999999999875  69999988776654   5889999


Q ss_pred             cCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          768 LGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       768 ~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      +||++|.      +|..|+||||+|+..++.+++++|+++|     ++++.+|..|.|+...+
T Consensus       399 ~GADIN~------kD~~G~TPLh~Aa~~~n~eivelLLs~G-----ADIN~kD~~G~TpL~~A  450 (631)
T PHA02792        399 YIDDINK------IDKHGRSILYYCIESHSVSLVEWLIDNG-----ADINITTKYGSTCIGIC  450 (631)
T ss_pred             cCCcccc------ccccCcchHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCCCCCHHHHH
Confidence            9999988      8899999999999999999999999998     78999999998875544

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=2e-23  Score=234.25  Aligned_cols=210  Identities=20%  Similarity=0.181  Sum_probs=170.4

Q ss_pred             HHHHcCCcHHHHHHHHCCCC---CCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHh-CCCCcccc--------cCCCC
Q 001365          544 WSCMFGEIEVPAEIVAGGVL---RCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRAS-HIPDVDVA--------DNCGD  611 (1092)
Q Consensus       544 ~A~~fG~veVv~~LL~~Gad---in~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~-~Gadvna~--------D~~G~  611 (1092)
                      -|+.+|.+...+.|+...-.   +........|.|||-+||.+||  .+|+  +||+. .++++...        ..+|-
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH--~~vV--eyLle~~~a~~e~~GsV~FDge~Iega   85 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGH--ADVV--EYLLEHCRASPEQGGSVRFDGETIEGA   85 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCc--HHHH--HHHHHHhcCCccCCceEEeCCcccCCC
Confidence            36677777766666544221   1111224558999999999996  5565  56665 66665433        24566


Q ss_pred             cHHhh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHH
Q 001365          612 ITSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKL  686 (1092)
Q Consensus       612 TpL~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a  686 (1092)
                      +||-.    +|+++|++|.. |+++|....                      ..-|||-.|+.+|+++            
T Consensus        86 ppLWaAsaAGHl~vVk~L~~~ga~VN~tT~----------------------TNStPLraACfDG~le------------  131 (615)
T KOG0508|consen   86 PPLWAASAAGHLEVVKLLLRRGASVNDTTR----------------------TNSTPLRAACFDGHLE------------  131 (615)
T ss_pred             chhhHHhccCcHHHHHHHHHhcCccccccc----------------------cCCccHHHHHhcchhH------------
Confidence            66653    89999999854 777765432                      3458998888888765            


Q ss_pred             HHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHH
Q 001365          687 LKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLI  766 (1092)
Q Consensus       687 ~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LL  766 (1092)
                              +++.|+++|+|++..|..|.|.||+||..|+.+|+++|++.|+|+|.++..|.|+||.|+..|+.++|++||
T Consensus       132 --------ivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll  203 (615)
T KOG0508|consen  132 --------IVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLL  203 (615)
T ss_pred             --------HHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHH
Confidence                    889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 001365          767 ALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE  806 (1092)
Q Consensus       767 e~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe  806 (1092)
                      .+|+.+.       +|..|.|||..|+..|+.++|.+|+.
T Consensus       204 ~~ga~i~-------~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  204 KHGAKID-------VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             hCCceee-------ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999886       46889999999999999999999996

>PHA02795 ankyrin-like protein; Provisional

Probab=99.89  E-value=1.3e-22  Score=235.62  Aligned_cols=192  Identities=17%  Similarity=0.023  Sum_probs=148.4

Q ss_pred             HHHHcCCcHHHHHHHHCCCCCCC----CCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhhhHH
Q 001365          544 WSCMFGEIEVPAEIVAGGVLRCH----TSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRM  619 (1092)
Q Consensus       544 ~A~~fG~veVv~~LL~~Gadin~----~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~~~~  619 (1092)
                      +|+.++..|+++.|+.+|++++.    -..+..++|+||+|+.++.  ..+..++||+.+||+++..  ++.||+|    
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~--n~~eiV~~LI~~GADIn~~--~~~t~lh----  154 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAY--VEIDIVDFMVDHGAVIYKI--ECLNAYF----  154 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcC--CCHHHHHHHHHCCCCCCCC--CCCCHHH----
Confidence            78888888888888888888661    1245568888888888543  3344556788888888764  2244444    


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHH
Q 001365          620 QFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKA  699 (1092)
Q Consensus       620 ~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklL  699 (1092)
                                                                    .++..+...                    ++++|
T Consensus       155 ----------------------------------------------~A~~~~~~e--------------------IVk~L  168 (437)
T PHA02795        155 ----------------------------------------------RGICKKESS--------------------VVEFI  168 (437)
T ss_pred             ----------------------------------------------HHHHcCcHH--------------------HHHHH
Confidence                                                          443333221                    56666


Q ss_pred             HhCCCCC-Ccc-----cCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCC
Q 001365          700 AEGGKGP-CVL-----DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPG  773 (1092)
Q Consensus       700 le~Gadv-N~~-----D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin  773 (1092)
                      +.+|++. +..     +..|.|++|.|+..++.+++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++||++|
T Consensus       169 ls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN  248 (437)
T PHA02795        169 LNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN  248 (437)
T ss_pred             HhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            6666632 221     2347899999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcC--------cHHHHHHHHHcCCCCCcccCcccC
Q 001365          774 ALSDPTPKYPSGRTPADLASSIG--------HKGIAGYLAESDLSSALSAISLNK  820 (1092)
Q Consensus       774 ~~~D~n~~D~~G~TPLhlAa~~G--------~~eiv~~LLe~Ga~~h~adlnlkD  820 (1092)
                      +      +|..|+||||+|+..|        |.+++++|+++|     ++++..+
T Consensus       249 ~------~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~g-----adI~~~~  292 (437)
T PHA02795        249 A------VMSNGYTCLDVAVDRGSVIARRETHLKILEILLREP-----LSIDCIK  292 (437)
T ss_pred             C------cCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCC-----CCCCchh
Confidence            8      7799999999999998        579999999988     4555543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2.3e-21  Score=207.36  Aligned_cols=125  Identities=18%  Similarity=0.076  Sum_probs=111.8

Q ss_pred             HHHHHHhCCCCCCccc-CCCCcHHHHHHHc---CCHhHHHHHHHCCCCccccCCCCccHHHHHHH--cCCHHHHHHHHHc
Q 001365          695 LVQKAAEGGKGPCVLD-HCGQGVLHFAAAL---GYDWALEPTTVAGVNINFRDVNGWTALHWAAY--CGRERTVASLIAL  768 (1092)
Q Consensus       695 LvklLle~GadvN~~D-~~G~TpLH~AA~~---G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~--~G~~eiV~~LLe~  768 (1092)
                      ++++|+++|+++|.++ ..|+||||+|+..   ++.+++++|+++|+++|.+|..|.||||+|+.  .++.+++++|+++
T Consensus        68 iv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~  147 (209)
T PHA02859         68 ILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS  147 (209)
T ss_pred             HHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence            7889999999999997 4899999998864   47999999999999999999999999999986  4789999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHH-HHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH-HHHh
Q 001365          769 GAAPGALSDPTPKYPSGRTPADL-ASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA-EVTG  830 (1092)
Q Consensus       769 GAdin~~~D~n~~D~~G~TPLhl-Aa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta-~iaa  830 (1092)
                      |++++.      +|..|.||||. |+..++.+++++|+++|     ++++.+|..|.|| +++.
T Consensus       148 gadin~------~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~G-----adi~~~d~~g~tpl~la~  200 (209)
T PHA02859        148 GVSFLN------KDFDNNNILYSYILFHSDKKIFDFLTSLG-----IDINETNKSGYNCYDLIK  200 (209)
T ss_pred             CCCccc------ccCCCCcHHHHHHHhcCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHh
Confidence            999987      78999999996 56788999999999998     7899999999666 4443

>PHA02792 ankyrin-like protein; Provisional

Probab=99.84  E-value=8.1e-20  Score=219.15  Aligned_cols=260  Identities=11%  Similarity=-0.066  Sum_probs=172.8

Q ss_pred             cCCcccChHHHHHHHcC-------CcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCccc
Q 001365          533 LMSQQEAENCKWSCMFG-------EIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDV  605 (1092)
Q Consensus       533 l~~~~~~TpLH~A~~fG-------~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna  605 (1092)
                      ..+..+.||||+|+..+       +.||++.||.+|++++  ..+..|.||||+|+.+.+  -....|++|+.. +... 
T Consensus       170 ~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~--~~d~~g~t~l~~~~~~~~--i~~ei~~~L~~~-~~~~-  243 (631)
T PHA02792        170 YDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR--YYTYREHTTLYYYVDKCD--IKREIFDALFDS-NYSG-  243 (631)
T ss_pred             cCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC--ccCCCCChHHHHHHHccc--chHHHHHHHHhc-cccc-
Confidence            34455889999999999       8999999999999977  566779999999998863  345667788764 2111 


Q ss_pred             ccCCCCcHHh-h-----------hHHHHHHHHhcCCCCCCCCC---CCCch-hhHHHHHHHh----hh---hccCCCcch
Q 001365          606 ADNCGDITSE-N-----------LRMQFGKLLCLTSVSTPNYD---PSNLS-DISQLNSKIS----SL---LKDENDDWD  662 (1092)
Q Consensus       606 ~D~~G~TpL~-~-----------~~~~lvkLLl~gadv~~~~~---~~~~~-~~~~ll~~I~----~L---l~~d~~g~t  662 (1092)
                        .+-..-|+ +           ....++.+|+.+........   +.... .....+.+..    .+   -.....-..
T Consensus       244 --~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~i  321 (631)
T PHA02792        244 --NELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYI  321 (631)
T ss_pred             --cchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccH
Confidence              01111121 1           22347777777665322111   11111 1111111111    11   011112223


Q ss_pred             HHHHhhhhcCCChH--HHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCC--CcHHHHHHHcCCH---hHHHHHHHC
Q 001365          663 LMLKLTAEEKFSSE--EVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCG--QGVLHFAAALGYD---WALEPTTVA  735 (1092)
Q Consensus       663 ~L~~a~~~~~~s~~--~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G--~TpLH~AA~~G~~---~iVk~LL~~  735 (1092)
                      .+.+.+.+.+....  .....++ .++..+..+ ++++|+++|+++|.+|..|  .||||+|+..+..   +++++|+++
T Consensus       322 eiIK~LId~Ga~~~r~~~~n~~~-~Aa~~gn~e-IVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~  399 (631)
T PHA02792        322 NVIKCMIDEGATLYRFKHINKYF-QKFDNRDPK-VVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPY  399 (631)
T ss_pred             HHHHHHHHCCCccccCCcchHHH-HHHHcCCHH-HHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhc
Confidence            33333333333221  1112233 333333222 8999999999999999875  6999998876654   458899999


Q ss_pred             CCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHH----------cCcHHHHHHHH
Q 001365          736 GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASS----------IGHKGIAGYLA  805 (1092)
Q Consensus       736 Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~----------~G~~eiv~~LL  805 (1092)
                      |||+|.+|..|+||||+|+..++.+++++|+++||++|.      +|..|.||||+|+.          ....+++++|+
T Consensus       400 GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~------kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLL  473 (631)
T PHA02792        400 IDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINI------TTKYGSTCIGICVILAHACIPEIAELYIKILEIIL  473 (631)
T ss_pred             CCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC------cCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988      78999999999976          22366789999


Q ss_pred             HcC
Q 001365          806 ESD  808 (1092)
Q Consensus       806 e~G  808 (1092)
                      ++|
T Consensus       474 s~~  476 (631)
T PHA02792        474 SKL  476 (631)
T ss_pred             hcC
Confidence            887

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.84  E-value=3.4e-20  Score=234.95  Aligned_cols=246  Identities=12%  Similarity=0.034  Sum_probs=164.1

Q ss_pred             cCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhhhHHHHHHHHhc
Q 001365          548 FGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRMQFGKLLCL  627 (1092)
Q Consensus       548 fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~~~~~lvkLLl~  627 (1092)
                      ..+.++-..+.+.+...    .+..+.++||.||..|+    ...++.|++.|+++|..|..|.||||            
T Consensus       504 l~~l~v~~ll~~~~~~~----~~~~~~~~L~~Aa~~g~----~~~l~~Ll~~G~d~n~~d~~G~TpLh------------  563 (823)
T PLN03192        504 LHDLNVGDLLGDNGGEH----DDPNMASNLLTVASTGN----AALLEELLKAKLDPDIGDSKGRTPLH------------  563 (823)
T ss_pred             hccccHHHHHhhccccc----CCccchhHHHHHHHcCC----HHHHHHHHHCCCCCCCCCCCCCCHHH------------
Confidence            34555566665555531    22346788888888875    34446778888888887766666665            


Q ss_pred             CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCC
Q 001365          628 TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPC  707 (1092)
Q Consensus       628 gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN  707 (1092)
                                                            .|+..+..                    .++++|+++|+++|
T Consensus       564 --------------------------------------~Aa~~g~~--------------------~~v~~Ll~~gadin  585 (823)
T PLN03192        564 --------------------------------------IAASKGYE--------------------DCVLVLLKHACNVH  585 (823)
T ss_pred             --------------------------------------HHHHcChH--------------------HHHHHHHhcCCCCC
Confidence                                                  33332221                    16677888888888


Q ss_pred             cccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 001365          708 VLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRT  787 (1092)
Q Consensus       708 ~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~T  787 (1092)
                      .+|..|+||||+|+..|+.+++++|+..++..+.  ..|.||||+||..|+.++|++|+++|+++|.      +|..|+|
T Consensus       586 ~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~------~d~~G~T  657 (823)
T PLN03192        586 IRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDS------EDHQGAT  657 (823)
T ss_pred             CcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCC------CCCCCCC
Confidence            8888899999999999999999988888776543  4567889999999999999999998888877      7788999


Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCC-CcHH-HHhhhhhcc------ccccCCCCCCCCCCCCCcchhhH
Q 001365          788 PADLASSIGHKGIAGYLAESDLSSALSAISLNKKDG-DVAE-VTGATAVQT------VPQRCPTPVSDGDLPYGLSMKDS  859 (1092)
Q Consensus       788 PLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G-~ta~-iaa~~~v~~------l~~~~as~~s~~~~~~~~sLkdS  859 (1092)
                      |||+|+..|+.+++++|+++|     ++++..|..| .++. ++.......      +......... .......+..+.
T Consensus       658 pLh~A~~~g~~~iv~~Ll~~G-----Adv~~~~~~g~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  731 (823)
T PLN03192        658 ALQVAMAEDHVDMVRLLIMNG-----ADVDKANTDDDFSPTELRELLQKRELGHSITIVDSVPADEP-DLGRDGGSRPGR  731 (823)
T ss_pred             HHHHHHHCCcHHHHHHHHHcC-----CCCCCCCCCCCCCHHHHHHHHHHhhhCceeeeccCCCcccc-cccccccccccc
Confidence            999999999999999999888     6788888877 4442 222111111      1111111110 011222333445


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 001365          860 LAAVRNATQAAARIHQVFRVQSFQKKQ  886 (1092)
Q Consensus       860 L~AvrnA~qAAarIQqafR~~S~rrkq  886 (1092)
                      +.+.....+.+.++ ..+|.+.+.+++
T Consensus       732 ~~~~~~~~~~~~~~-~~~~~~p~~~~~  757 (823)
T PLN03192        732 LQGTSSDNQCRPRV-SIYKGHPLLRNE  757 (823)
T ss_pred             ccccccccccCceE-EEecCCCccccc
Confidence            55555555566666 778888887665

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.84  E-value=2.5e-20  Score=234.03  Aligned_cols=229  Identities=14%  Similarity=0.056  Sum_probs=171.6

Q ss_pred             ChHHHHHHHcCCcHHHHHHHHC--CCCCCCCCCCCCCchHHH-HHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHh
Q 001365          539 AENCKWSCMFGEIEVPAEIVAG--GVLRCHTSSQKVGRVPFY-VTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSE  615 (1092)
Q Consensus       539 ~TpLH~A~~fG~veVv~~LL~~--Gadin~~~~d~~G~TPLH-lAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~  615 (1092)
                      ..+++.||..|+.+.++.+++.  ++++|  ..|..|+|||| .|+.+++  .+++  ++|+..|+    .+..|.||||
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~in--~~d~~G~t~Lh~~A~~~~~--~eiv--~lLl~~g~----~~~~G~T~Lh   87 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDLEEPKKLNIN--CPDRLGRSALFVAAIENEN--LELT--ELLLNLSC----RGAVGDTLLH   87 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHhccccccCCC--CcCccchhHHHHHHHhcCh--HHHH--HHHHhCCC----CCCcChHHHH
Confidence            5699999999999999999999  77766  66777999999 7777664  4554  67888887    6788999999


Q ss_pred             hhHH---H----HHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHH
Q 001365          616 NLRM---Q----FGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLK  688 (1092)
Q Consensus       616 ~~~~---~----lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k  688 (1092)
                      ....   .    ++.++..........         ......  .......|.||||.|+..++..              
T Consensus        88 ~A~~~~~~~v~~ll~~l~~~~~~~~~~---------~~~~~~--~~~~~~~G~TpLhlAa~~~~~e--------------  142 (743)
T TIGR00870        88 AISLEYVDAVEAILLHLLAAFRKSGPL---------ELANDQ--YTSEFTPGITALHLAAHRQNYE--------------  142 (743)
T ss_pred             HHHhccHHHHHHHHHHHhhcccccCch---------hhhccc--cccccCCCCcHHHHHHHhCCHH--------------
Confidence            6332   2    222222211110000         000000  0111246999999998876643              


Q ss_pred             hhhHHHHHHHHHhCCCCCCccc--------------CCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHH
Q 001365          689 EKLQVWLVQKAAEGGKGPCVLD--------------HCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA  754 (1092)
Q Consensus       689 ~~l~~~LvklLle~GadvN~~D--------------~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa  754 (1092)
                            ++++|+++|+++|.++              ..|.||||+|+..|+.+++++|+++|+|+|.+|..|+||||+|+
T Consensus       143 ------iVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~  216 (743)
T TIGR00870       143 ------IVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLV  216 (743)
T ss_pred             ------HHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHH
Confidence                  8899999999999764              25899999999999999999999999999999999999999999


Q ss_pred             HcC---------CHHHHHHHHHcCCCCCCCC-CCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          755 YCG---------RERTVASLIALGAAPGALS-DPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       755 ~~G---------~~eiV~~LLe~GAdin~~~-D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      ..+         ...+.+++++.++...... ..+..|.+|.||||+|+..|+.+++++|++.+
T Consensus       217 ~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       217 MENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            987         3456777887777653210 01347899999999999999999999999954

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=1.8e-20  Score=215.09  Aligned_cols=225  Identities=22%  Similarity=0.262  Sum_probs=148.4

Q ss_pred             HHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHh----hh
Q 001365          542 CKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSE----NL  617 (1092)
Q Consensus       542 LH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~----~~  617 (1092)
                      +-=||..|+.+-|..||..|+.++.+..|  |.|+||-+|...+    ..++.||++.|++||..|++|+||||    .+
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~~~~n~D--glTalhq~~id~~----~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg  117 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASPNLCNVD--GLTALHQACIDDN----LEMVKFLVENGANVNAQDNEGWTPLHAAASCG  117 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCccccCCc--cchhHHHHHhccc----HHHHHHHHHhcCCccccccccCCcchhhcccc
Confidence            34466677777777777777665533333  7777777776643    33345677777777777777777777    36


Q ss_pred             HHHHHHHHh-cCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHH
Q 001365          618 RMQFGKLLC-LTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLV  696 (1092)
Q Consensus       618 ~~~lvkLLl-~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~Lv  696 (1092)
                      +..++.+|+ +|++...... .++...        + +..+..+.+.+-.+....+++....+...-...+.+     +.
T Consensus       118 ~~~i~~~li~~gA~~~avNs-dg~~P~--------d-l~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D-----~~  182 (527)
T KOG0505|consen  118 YLNIVEYLIQHGANLLAVNS-DGNMPY--------D-LAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDD-----AR  182 (527)
T ss_pred             cHHHHHHHHHhhhhhhhccC-CCCCcc--------c-cccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHH-----HH
Confidence            666666553 3444332221 110000        0 011112222222222333333222222222222222     22


Q ss_pred             HHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 001365          697 QKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS  776 (1092)
Q Consensus       697 klLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~  776 (1092)
                      ..+ ..|...++.+..|.|.||.|+.+|+.++.++||.+|.+++.+|.+||||||.||.+|..+++++|+++|++++.  
T Consensus       183 q~l-~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~--  259 (527)
T KOG0505|consen  183 QWL-NAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDA--  259 (527)
T ss_pred             HHH-hccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccch--
Confidence            333 48999999999999999999999999999999999999999999999999999999999999999999999988  


Q ss_pred             CCCCCCCCCCCHHHHHHH
Q 001365          777 DPTPKYPSGRTPADLASS  794 (1092)
Q Consensus       777 D~n~~D~~G~TPLhlAa~  794 (1092)
                          ....|.||+.+|..
T Consensus       260 ----~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  260 ----KTKMGETPLDVADE  273 (527)
T ss_pred             ----hhhcCCCCccchhh
Confidence                56899999999875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.83  E-value=7.4e-20  Score=231.85  Aligned_cols=179  Identities=18%  Similarity=0.138  Sum_probs=146.1

Q ss_pred             CcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHH
Q 001365          535 SQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITS  614 (1092)
Q Consensus       535 ~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL  614 (1092)
                      ++...++||.||..|+.++++.|++.|+++|  ..|..|+||||+||.+|+  .++  +++|+.+|+++|.+|.+|.|||
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n--~~d~~G~TpLh~Aa~~g~--~~~--v~~Ll~~gadin~~d~~G~TpL  595 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPD--IGDSKGRTPLHIAASKGY--EDC--VLVLLKHACNVHIRDANGNTAL  595 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCh--HHH--HHHHHhcCCCCCCcCCCCCCHH
Confidence            3345679999999999999999999999987  667789999999999986  444  4688999999998887777777


Q ss_pred             hhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHH
Q 001365          615 ENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVW  694 (1092)
Q Consensus       615 ~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~  694 (1092)
                      |                                                  .|+..++..                    
T Consensus       596 ~--------------------------------------------------~A~~~g~~~--------------------  605 (823)
T PLN03192        596 W--------------------------------------------------NAISAKHHK--------------------  605 (823)
T ss_pred             H--------------------------------------------------HHHHhCCHH--------------------
Confidence            6                                                  222222211                    


Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      ++++|+..++..+  ...|.++||+||..|+.++++.|+++|+|+|.+|.+|+||||+|+..|+.++|++|+++||+++.
T Consensus       606 iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~  683 (823)
T PLN03192        606 IFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK  683 (823)
T ss_pred             HHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC
Confidence            4445555554443  23567999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCCCCC-CCHHHHHHHcCc
Q 001365          775 LSDPTPKYPSG-RTPADLASSIGH  797 (1092)
Q Consensus       775 ~~D~n~~D~~G-~TPLhlAa~~G~  797 (1092)
                            .|..| .||++++.....
T Consensus       684 ------~~~~g~~t~~~l~~~~~~  701 (823)
T PLN03192        684 ------ANTDDDFSPTELRELLQK  701 (823)
T ss_pred             ------CCCCCCCCHHHHHHHHHH
Confidence                  66777 999998865443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.81  E-value=7.6e-20  Score=200.77  Aligned_cols=97  Identities=27%  Similarity=0.285  Sum_probs=89.3

Q ss_pred             CCCccc-CCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCC
Q 001365          705 GPCVLD-HCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL-GAAPGALSDPTPKY  782 (1092)
Q Consensus       705 dvN~~D-~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~-GAdin~~~D~n~~D  782 (1092)
                      |||++- ..|+|+|++|+..|+.++|+.||.+|||||.+|.+|.|+|++||.+||.+||++||.. ++|+.+      .|
T Consensus       331 nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sL------tD  404 (452)
T KOG0514|consen  331 DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISL------TD  404 (452)
T ss_pred             CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccccee------ec
Confidence            677764 4699999999999999999999999999999999999999999999999999999976 677766      78


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHc
Q 001365          783 PSGRTPADLASSIGHKGIAGYLAES  807 (1092)
Q Consensus       783 ~~G~TPLhlAa~~G~~eiv~~LLe~  807 (1092)
                      .+|.|+|.+|...||.+|.-+|-.+
T Consensus       405 ~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  405 VDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             CCCchhhhhHHhcCchHHHHHHHHH
Confidence            9999999999999999999888753

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.81  E-value=8.4e-20  Score=188.94  Aligned_cols=221  Identities=18%  Similarity=0.149  Sum_probs=179.9

Q ss_pred             HHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh----h
Q 001365          542 CKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN----L  617 (1092)
Q Consensus       542 LH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~----~  617 (1092)
                      +.-+...|+.+++..++....+.. ..++..|+..+|+|+-.++    +.+...++.+|+..|..+.-+++|+++    .
T Consensus        66 ~~~~~~s~nsd~~v~s~~~~~~~~-~~t~p~g~~~~~v~ap~~s----~~k~sttltN~~rgnevs~~p~s~~slsVhql  140 (296)
T KOG0502|consen   66 LTVAVRSGNSDVAVQSAQLDPDAI-DETDPEGWSALLVAAPCGS----VDKVSTTLTNGARGNEVSLMPWSPLSLSVHQL  140 (296)
T ss_pred             cchhhhcCCcHHHHHhhccCCCCC-CCCCchhhhhhhhcCCCCC----cceeeeeecccccCCccccccCChhhHHHHHH
Confidence            345667788888887777665533 2334559999999985553    555567889999999999999999874    4


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHH
Q 001365          618 RMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQ  697 (1092)
Q Consensus       618 ~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~Lvk  697 (1092)
                      +++.+.+| ....+|..                      |..|+|||+.|+..|++.                    +++
T Consensus       141 ~L~~~~~~-~~n~VN~~----------------------De~GfTpLiWAaa~G~i~--------------------vV~  177 (296)
T KOG0502|consen  141 HLDVVDLL-VNNKVNAC----------------------DEFGFTPLIWAAAKGHIP--------------------VVQ  177 (296)
T ss_pred             HHHHHHHH-hhccccCc----------------------cccCchHhHHHHhcCchH--------------------HHH
Confidence            44444333 22333322                      468999999999998876                    789


Q ss_pred             HHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 001365          698 KAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSD  777 (1092)
Q Consensus       698 lLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D  777 (1092)
                      +|+..|++++...+...|+|.+|+..|+.++|++||.+++|+|..|.+|-|||-+|++.||.+||+.||+.||+++.   
T Consensus       178 fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~---  254 (296)
T KOG0502|consen  178 FLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQ---  254 (296)
T ss_pred             HHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCccc---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887   


Q ss_pred             CCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCC
Q 001365          778 PTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKD  822 (1092)
Q Consensus       778 ~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~  822 (1092)
                         .|..|.+++.+|+..|+. +|+..+++-     +..+.+|+.
T Consensus       255 ---e~dsGy~~mdlAValGyr-~Vqqvie~h-----~lkl~Q~~~  290 (296)
T KOG0502|consen  255 ---EDDSGYWIMDLAVALGYR-IVQQVIEKH-----ALKLCQDSE  290 (296)
T ss_pred             ---ccccCCcHHHHHHHhhhH-HHHHHHHHH-----HHHHhhccc
Confidence               678999999999999998 888888865     445555543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.80  E-value=4.1e-19  Score=206.46  Aligned_cols=190  Identities=12%  Similarity=-0.019  Sum_probs=143.2

Q ss_pred             HHHHHhCCCCcccccCCCCcHHhhhHHHHHHHH-hcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhc
Q 001365          593 FEYRASHIPDVDVADNCGDITSENLRMQFGKLL-CLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEE  671 (1092)
Q Consensus       593 fe~Ll~~Gadvna~D~~G~TpL~~~~~~lvkLL-l~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~  671 (1092)
                      ++|++.+|+++|..+.+|.-+.. ...+++.+| ++|++++.-..                .+..+..++|+||.++..+
T Consensus        65 ~~~~~~~~~~i~~~~~~~~~~~~-~~k~~~~~l~s~~~~~~~~~~----------------~~~~~~~~~~~L~~~~~n~  127 (437)
T PHA02795         65 YDYFRIHRDNIDQYIVDRLFAYI-TYKDIISALVSKNYMEDIFSI----------------IIKNCNSVQDLLLYYLSNA  127 (437)
T ss_pred             HHHHHHcCcchhhhhhhhHHhhc-chHHHHHHHHhcccccchhhh----------------hhhccccccHHHHHHHHhc
Confidence            46666777777666655522222 333444443 45555542111                0122356788888887733


Q ss_pred             CCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCcccc------CCC
Q 001365          672 KFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFR------DVN  745 (1092)
Q Consensus       672 ~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~------D~~  745 (1092)
                      .-.                  .-++++|+++||++|..  .+.||||.|+..|+.++|++|+++|++.+..      +..
T Consensus       128 ~n~------------------~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~  187 (437)
T PHA02795        128 YVE------------------IDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKII  187 (437)
T ss_pred             CCC------------------HHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhh
Confidence            211                  11899999999999985  4589999999999999999999999854322      245


Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCc
Q 001365          746 GWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDV  825 (1092)
Q Consensus       746 G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~t  825 (1092)
                      |.||+|.|+..++.++|++|+++||++|.      +|..|.||||+|+..|+.+++++|+++|     ++++.+|..|.|
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~GADIN~------kD~~G~TpLh~Aa~~g~~eiVelLL~~G-----AdIN~~d~~G~T  256 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPYIEDINQ------LDAGGRTLLYRAIYAGYIDLVSWLLENG-----ANVNAVMSNGYT  256 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhCcCCcCc------CCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCCCCC
Confidence            88999999999999999999999999988      7899999999999999999999999998     789999999977


Q ss_pred             HHHHh
Q 001365          826 AEVTG  830 (1092)
Q Consensus       826 a~iaa  830 (1092)
                      +...|
T Consensus       257 pLh~A  261 (437)
T PHA02795        257 CLDVA  261 (437)
T ss_pred             HHHHH
Confidence            75444

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.79  E-value=1.7e-19  Score=202.92  Aligned_cols=193  Identities=16%  Similarity=0.105  Sum_probs=153.2

Q ss_pred             cCCCCcHHh----hhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHH
Q 001365          607 DNCGDITSE----NLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKL  682 (1092)
Q Consensus       607 D~~G~TpL~----~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~l  682 (1092)
                      +.+|.|||.    +||.+++++|+..........  +...          .--..-+|..||-.|...+++.        
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~--GsV~----------FDge~IegappLWaAsaAGHl~--------   98 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQG--GSVR----------FDGETIEGAPPLWAASAAGHLE--------   98 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCC--ceEE----------eCCcccCCCchhhHHhccCcHH--------
Confidence            356789987    599999999977332222111  0000          0001136777877776666653        


Q ss_pred             HHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHH
Q 001365          683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTV  762 (1092)
Q Consensus       683 L~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV  762 (1092)
                                  +++.|+.+|++||.......|||-.||.-|+.++|++|+++|+|++..|..|.|.||+||+.||.+|+
T Consensus        99 ------------vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~  166 (615)
T KOG0508|consen   99 ------------VVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIA  166 (615)
T ss_pred             ------------HHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHH
Confidence                        89999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH-HHHhhhhhccccccC
Q 001365          763 ASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA-EVTGATAVQTVPQRC  841 (1092)
Q Consensus       763 ~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta-~iaa~~~v~~l~~~~  841 (1092)
                      ++|++.|||+|.      ++..|+|+||.|+..|+.+|+++|+.+|+     .+.+ |..|-|| ..++...+..++++.
T Consensus       167 qyLle~gADvn~------ks~kGNTALH~caEsG~vdivq~Ll~~ga-----~i~~-d~~GmtPL~~Aa~tG~~~iVe~L  234 (615)
T KOG0508|consen  167 QYLLEQGADVNA------KSYKGNTALHDCAESGSVDIVQLLLKHGA-----KIDV-DGHGMTPLLLAAVTGHTDIVERL  234 (615)
T ss_pred             HHHHHhCCCcch------hcccCchHHHhhhhcccHHHHHHHHhCCc-----eeee-cCCCCchHHHHhhhcchHHHHHH
Confidence            999999999988      77999999999999999999999999993     4544 5558444 555556666666665


Q ss_pred             CC
Q 001365          842 PT  843 (1092)
Q Consensus       842 as  843 (1092)
                      ..
T Consensus       235 ~~  236 (615)
T KOG0508|consen  235 LQ  236 (615)
T ss_pred             hc
Confidence            54

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.78  E-value=1.2e-18  Score=179.99  Aligned_cols=140  Identities=21%  Similarity=0.178  Sum_probs=119.1

Q ss_pred             CCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhH---HHHHHH
Q 001365          658 NDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWA---LEPTTV  734 (1092)
Q Consensus       658 ~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~i---Vk~LL~  734 (1092)
                      .++.+++|.++..+.+..               + ..+++.|++.|++++.+|..|+||||+||..|+.++   |++|+.
T Consensus        18 ~~~~~~l~~a~~~g~~~~---------------l-~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~   81 (166)
T PHA02743         18 EDEQNTFLRICRTGNIYE---------------L-MEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVN   81 (166)
T ss_pred             cCCCcHHHHHHHcCCHHH---------------H-HHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHH
Confidence            345567777776555321               1 115567788999999999999999999999998665   899999


Q ss_pred             CCCCccccC-CCCccHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC
Q 001365          735 AGVNINFRD-VNGWTALHWAAYCGRERTVASLIA-LGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSA  812 (1092)
Q Consensus       735 ~Gadin~~D-~~G~TpLH~Aa~~G~~eiV~~LLe-~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h  812 (1092)
                      +|+++|.+| ..|.||||+|+..|+.+++++|+. .|++++.      +|..|.||||+|+..|+.+++++|+++|    
T Consensus        82 ~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~------~d~~g~tpL~~A~~~~~~~iv~~Ll~~g----  151 (166)
T PHA02743         82 MGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGA------INYQHETAYHIAYKMRDRRMMEILRANG----  151 (166)
T ss_pred             cCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccC------cCCCCCCHHHHHHHcCCHHHHHHHHHcC----
Confidence            999999998 589999999999999999999995 7999887      7899999999999999999999999998    


Q ss_pred             cccCcccCCCCC
Q 001365          813 LSAISLNKKDGD  824 (1092)
Q Consensus       813 ~adlnlkD~~G~  824 (1092)
                       ++++.++..|.
T Consensus       152 -a~~~~~~~~~~  162 (166)
T PHA02743        152 -AVCDDPLSIGL  162 (166)
T ss_pred             -CCCCCcccCCc
Confidence             67888887774

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.74  E-value=2.2e-17  Score=170.55  Aligned_cols=80  Identities=24%  Similarity=0.116  Sum_probs=75.0

Q ss_pred             HHHHHHhCCCCCCccc-CCCCcHHHHHHHcCCHhHHHHHHH-CCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCC
Q 001365          695 LVQKAAEGGKGPCVLD-HCGQGVLHFAAALGYDWALEPTTV-AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP  772 (1092)
Q Consensus       695 LvklLle~GadvN~~D-~~G~TpLH~AA~~G~~~iVk~LL~-~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdi  772 (1092)
                      ++++|+..|+++|.+| ..|.||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus        75 ~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~  154 (166)
T PHA02743         75 KIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVC  154 (166)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4567888999999998 589999999999999999999995 89999999999999999999999999999999999999


Q ss_pred             CC
Q 001365          773 GA  774 (1092)
Q Consensus       773 n~  774 (1092)
                      +.
T Consensus       155 ~~  156 (166)
T PHA02743        155 DD  156 (166)
T ss_pred             CC
Confidence            87

>PHA02741 hypothetical protein; Provisional

Probab=99.74  E-value=1e-17  Score=173.24  Aligned_cols=129  Identities=19%  Similarity=0.161  Sum_probs=113.2

Q ss_pred             cCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHH------hCCCCCCcccCCCCcHHHHHHHcCC----
Q 001365          656 DENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAA------EGGKGPCVLDHCGQGVLHFAAALGY----  725 (1092)
Q Consensus       656 ~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLl------e~GadvN~~D~~G~TpLH~AA~~G~----  725 (1092)
                      .+..|.++||.|+..++..                    +++.|+      ..|++++.+|..|+||||+|+..|+    
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~--------------------~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~   76 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFD--------------------IIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLA   76 (169)
T ss_pred             cccCCCCHHHHHHHcCCHH--------------------HHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHH
Confidence            3568999999999877754                    233332      3478899999999999999999998    


Q ss_pred             HhHHHHHHHCCCCccccCC-CCccHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHH
Q 001365          726 DWALEPTTVAGVNINFRDV-NGWTALHWAAYCGRERTVASLIA-LGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGY  803 (1092)
Q Consensus       726 ~~iVk~LL~~Gadin~~D~-~G~TpLH~Aa~~G~~eiV~~LLe-~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~  803 (1092)
                      .+++++|+.+|+++|.+|. .|+||||+|+..|+.++|++|+. .|++++.      +|..|+||||+|+..|+.+++++
T Consensus        77 ~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~------~n~~g~tpL~~A~~~~~~~iv~~  150 (169)
T PHA02741         77 AEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHF------CNADNKSPFELAIDNEDVAMMQI  150 (169)
T ss_pred             HHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc------CCCCCCCHHHHHHHCCCHHHHHH
Confidence            5899999999999999995 99999999999999999999998 5998877      77999999999999999999999


Q ss_pred             HHHcCCC
Q 001365          804 LAESDLS  810 (1092)
Q Consensus       804 LLe~Ga~  810 (1092)
                      |++.++.
T Consensus       151 L~~~~~~  157 (169)
T PHA02741        151 LREIVAT  157 (169)
T ss_pred             HHHHHHH
Confidence            9998743

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.74  E-value=2.8e-18  Score=205.35  Aligned_cols=256  Identities=18%  Similarity=0.094  Sum_probs=165.6

Q ss_pred             cccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccc-cCCCCcHH
Q 001365          536 QQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVA-DNCGDITS  614 (1092)
Q Consensus       536 ~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~-D~~G~TpL  614 (1092)
                      ....|+|-+||..|+.|+|.+||..|+++.  -+|+.|.|||.+|+..||  ..|+  +.|+++-+++++. |..+.|+|
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rganie--hrdkkgf~plImaatagh--~tvV--~~llk~ha~veaQsdrtkdt~l  828 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRGANIE--HRDKKGFVPLIMAATAGH--ITVV--QDLLKAHADVEAQSDRTKDTML  828 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhccccc--ccccccchhhhhhcccCc--hHHH--HHHHhhhhhhhhhcccccCceE
Confidence            345789999999999999999999999876  677889999999999986  4444  6788999999887 88899999


Q ss_pred             hh----hHHHHHHHHh-cCCCCCCCCCCC-------CchhhHHHHHHHhhhh------ccCCCcchHHHHhhhhcCCChH
Q 001365          615 EN----LRMQFGKLLC-LTSVSTPNYDPS-------NLSDISQLNSKISSLL------KDENDDWDLMLKLTAEEKFSSE  676 (1092)
Q Consensus       615 ~~----~~~~lvkLLl-~gadv~~~~~~~-------~~~~~~~ll~~I~~Ll------~~d~~g~t~L~~a~~~~~~s~~  676 (1092)
                      -.    +..+++.||+ .|++...+...+       ....-.+++..+..-.      .....|..||+.+...++..  
T Consensus       829 Slacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~--  906 (2131)
T KOG4369|consen  829 SLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQA--  906 (2131)
T ss_pred             EEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccH--
Confidence            74    6667777765 466554432200       0000000000000000      00122333444333333221  


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccC-CCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHH
Q 001365          677 EVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDH-CGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAY  755 (1092)
Q Consensus       677 ~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~-~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~  755 (1092)
                                        ..+.|++.|.|+|..-. +-+|+|-+|+..|+.++|.+||.+.+++..|-+.|.|||+-+|.
T Consensus       907 ------------------at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~As  968 (2131)
T KOG4369|consen  907 ------------------ATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMAS  968 (2131)
T ss_pred             ------------------HHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhc
Confidence                              44556677777776432 44677777777777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH
Q 001365          756 CGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA  826 (1092)
Q Consensus       756 ~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta  826 (1092)
                      .|.+++-.+||.+|||+|+--    .-....|+|-+++..||...|.+|+...     +.+.++|++|.++
T Consensus       969 gGyvdvg~~li~~gad~nasP----vp~T~dtalti~a~kGh~kfv~~lln~~-----atv~v~NkkG~T~ 1030 (2131)
T KOG4369|consen  969 GGYVDVGNLLIAAGADTNASP----VPNTWDTALTIPANKGHTKFVPKLLNGD-----ATVRVPNKKGCTV 1030 (2131)
T ss_pred             CCccccchhhhhcccccccCC----CCCcCCccceeecCCCchhhhHHhhCCc-----cceecccCCCCcc
Confidence            777777777777777777632    2223446677777777777777777655     4566777777444

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.72  E-value=1.5e-17  Score=168.91  Aligned_cols=133  Identities=17%  Similarity=0.113  Sum_probs=106.3

Q ss_pred             cCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHH-hCCCCCCcccCCCCcHHHHHHHcCCHh---HHHH
Q 001365          656 DENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAA-EGGKGPCVLDHCGQGVLHFAAALGYDW---ALEP  731 (1092)
Q Consensus       656 ~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLl-e~GadvN~~D~~G~TpLH~AA~~G~~~---iVk~  731 (1092)
                      .+..|.||||.|+..+++.      .++..  .        ..+. ..+..++.+|..|+||||+||..|+.+   ++++
T Consensus        13 ~d~~g~tpLh~A~~~g~~~------~l~~~--~--------~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~   76 (154)
T PHA02736         13 PDIEGENILHYLCRNGGVT------DLLAF--K--------NAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKL   76 (154)
T ss_pred             cCCCCCCHHHHHHHhCCHH------HHHHH--H--------HHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHH
Confidence            3578999999999877521      01000  0        0000 011123457899999999999999874   6889


Q ss_pred             HHHCCCCccccC-CCCccHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          732 TTVAGVNINFRD-VNGWTALHWAAYCGRERTVASLIA-LGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       732 LL~~Gadin~~D-~~G~TpLH~Aa~~G~~eiV~~LLe-~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                      |++.|+++|.+| ..|+||||+|+..|+.+++++|+. .|++++.      +|..|+||||+|+..|+.+++++|+++|+
T Consensus        77 Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~------~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         77 LMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEI------LNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             HHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcc------ccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999998 499999999999999999999998 4999887      78999999999999999999999999984


Q ss_pred             C
Q 001365          810 S  810 (1092)
Q Consensus       810 ~  810 (1092)
                      .
T Consensus       151 ~  151 (154)
T PHA02736        151 Q  151 (154)
T ss_pred             C
Confidence            3

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.72  E-value=3.1e-17  Score=193.64  Aligned_cols=229  Identities=15%  Similarity=0.140  Sum_probs=180.1

Q ss_pred             HHHHHHHcCCcHHHHHHHHCCC-----C------CCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCC
Q 001365          541 NCKWSCMFGEIEVPAEIVAGGV-----L------RCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNC  609 (1092)
Q Consensus       541 pLH~A~~fG~veVv~~LL~~Ga-----d------in~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~  609 (1092)
                      -|-=||..|+++.++.||+..-     .      .+..-.|..|.|.||.||.+|+  .++.  .+|++..+-++..|..
T Consensus         6 el~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~--~~is--~llle~ea~ldl~d~k   81 (854)
T KOG0507|consen    6 ELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQ--NQIS--KLLLDYEALLDLCDTK   81 (854)
T ss_pred             hHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCc--hHHH--HHHhcchhhhhhhhcc
Confidence            4556889999999988887421     1      1111225679999999999986  5554  5788888888888889


Q ss_pred             CCcHHhh----hHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHH
Q 001365          610 GDITSEN----LRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQK  685 (1092)
Q Consensus       610 G~TpL~~----~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~  685 (1092)
                      |.+|||+    ++.+++++|+...+......                     ..+.+|||.++..++.+           
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d~~na~~---------------------~e~~tplhlaaqhgh~d-----------  129 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTDILNAVN---------------------IENETPLHLAAQHGHLE-----------  129 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcccCCCccc---------------------ccCcCccchhhhhcchH-----------
Confidence            9999985    77788888755333322211                     47789999988877765           


Q ss_pred             HHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCC--------ccccCCCCccHHHHHHHcC
Q 001365          686 LLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVN--------INFRDVNGWTALHWAAYCG  757 (1092)
Q Consensus       686 a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gad--------in~~D~~G~TpLH~Aa~~G  757 (1092)
                               ++.+|+.+|+++-.+|..+.|+|-+|++.|..++|++|+....+        -..++..+-+|||+|+.+|
T Consensus       130 ---------vv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakng  200 (854)
T KOG0507|consen  130 ---------VVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNG  200 (854)
T ss_pred             ---------HHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcc
Confidence                     77889999999999999999999999999999999999886322        2345667889999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH
Q 001365          758 RERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA  826 (1092)
Q Consensus       758 ~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta  826 (1092)
                      |.++++.|++.|.++|..+       ...|+||-|+.+|..++|.+|++.|.     +..++|.+|.|+
T Consensus       201 h~~~~~~ll~ag~din~~t-------~~gtalheaalcgk~evvr~ll~~gi-----n~h~~n~~~qta  257 (854)
T KOG0507|consen  201 HVECMQALLEAGFDINYTT-------EDGTALHEAALCGKAEVVRFLLEIGI-----NTHIKNQHGQTA  257 (854)
T ss_pred             hHHHHHHHHhcCCCccccc-------ccchhhhhHhhcCcchhhhHHHhhcc-----ccccccccchHH
Confidence            9999999999999998744       45699999999999999999999994     466778888666

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.72  E-value=3.8e-17  Score=205.35  Aligned_cols=206  Identities=14%  Similarity=0.010  Sum_probs=154.0

Q ss_pred             CCchHHHHHHHcCCCchhHHHHHHHHhC--CCCcccccCCCCcHHhh-----hHHHHHHHHhcCCCCCCCCCCCCchhhH
Q 001365          572 VGRVPFYVTCSNRLSCSEVREFEYRASH--IPDVDVADNCGDITSEN-----LRMQFGKLLCLTSVSTPNYDPSNLSDIS  644 (1092)
Q Consensus       572 ~G~TPLHlAa~ng~~~seVv~fe~Ll~~--Gadvna~D~~G~TpL~~-----~~~~lvkLLl~gadv~~~~~~~~~~~~~  644 (1092)
                      .+.++|+.||..|.    +..+..++..  +.++|..|..|.||||.     .+.+++++|.....              
T Consensus        16 ~~~~~~l~A~~~g~----~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~--------------   77 (743)
T TIGR00870        16 DEEKAFLPAAERGD----LASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC--------------   77 (743)
T ss_pred             HHHHHHHHHHHcCC----HHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC--------------
Confidence            47899999999986    4444566777  88999999999999993     67788888866432              


Q ss_pred             HHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCC------CC----cccCCCC
Q 001365          645 QLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKG------PC----VLDHCGQ  714 (1092)
Q Consensus       645 ~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~Gad------vN----~~D~~G~  714 (1092)
                                 .+..|.|+||.++... ..                ..+.++..+...+.+      ++    ..+..|.
T Consensus        78 -----------~~~~G~T~Lh~A~~~~-~~----------------~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~  129 (743)
T TIGR00870        78 -----------RGAVGDTLLHAISLEY-VD----------------AVEAILLHLLAAFRKSGPLELANDQYTSEFTPGI  129 (743)
T ss_pred             -----------CCCcChHHHHHHHhcc-HH----------------HHHHHHHHHhhcccccCchhhhccccccccCCCC
Confidence                       1257889999876521 11                011133444443322      11    1235799


Q ss_pred             cHHHHHHHcCCHhHHHHHHHCCCCccccC--------------CCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 001365          715 GVLHFAAALGYDWALEPTTVAGVNINFRD--------------VNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTP  780 (1092)
Q Consensus       715 TpLH~AA~~G~~~iVk~LL~~Gadin~~D--------------~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~  780 (1092)
                      ||||+||..|+.++|++||++|++++.++              ..|.||||+|+..|+.+++++|+++|+|+|.      
T Consensus       130 TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~------  203 (743)
T TIGR00870       130 TALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILT------  203 (743)
T ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhh------
Confidence            99999999999999999999999999764              3699999999999999999999999998887      


Q ss_pred             CCCCCCCHHHHHHHcC---------cHHHHHHHHHcCCCCCcccC----cccCCCCCcH-HHHhh
Q 001365          781 KYPSGRTPADLASSIG---------HKGIAGYLAESDLSSALSAI----SLNKKDGDVA-EVTGA  831 (1092)
Q Consensus       781 ~D~~G~TPLhlAa~~G---------~~eiv~~LLe~Ga~~h~adl----nlkD~~G~ta-~iaa~  831 (1092)
                      +|..|+||||+|+..+         ...+.+++++.+..  ..+.    ++.|++|.|| .+++.
T Consensus       204 ~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~--~~~~~el~~i~N~~g~TPL~~A~~  266 (743)
T TIGR00870       204 ADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK--LRDSKELEVILNHQGLTPLKLAAK  266 (743)
T ss_pred             HhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc--cCChHhhhhhcCCCCCCchhhhhh
Confidence            7899999999999987         34566777776632  2333    7789999665 44443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.72  E-value=3.8e-17  Score=164.28  Aligned_cols=135  Identities=21%  Similarity=0.140  Sum_probs=110.1

Q ss_pred             HHHHHhhhHHHHHHHHHhCCCC-CCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHH
Q 001365          684 QKLLKEKLQVWLVQKAAEGGKG-PCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTV  762 (1092)
Q Consensus       684 ~~a~k~~l~~~LvklLle~Gad-vN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV  762 (1092)
                      ..+.++.+.  .|+.|++..++ +|.+|.+|.||||-|+.+|+.+||+.|+..||+++++...||||||-||.+++.+|+
T Consensus        69 waae~nrl~--eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va  146 (228)
T KOG0512|consen   69 WAAEKNRLT--EVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVA  146 (228)
T ss_pred             HHHhhccHH--HHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHH
Confidence            333344444  56777777776 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCc-HHHHHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          763 ASLIALGAAPGALSDPTPKYPSGRTPADLASSIGH-KGIAGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       763 ~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~-~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      .+||.+|||+|+++      ....||||+||.+.+ ...+.+|+-.-    ..+...+++.+.++..-+
T Consensus       147 ~~LLqhgaDVnA~t------~g~ltpLhlaa~~rn~r~t~~~Ll~dr----yi~pg~~nn~eeta~~iA  205 (228)
T KOG0512|consen  147 GRLLQHGADVNAQT------KGLLTPLHLAAGNRNSRDTLELLLHDR----YIHPGLKNNLEETAFDIA  205 (228)
T ss_pred             HHHHhccCcccccc------cccchhhHHhhcccchHHHHHHHhhcc----ccChhhhcCccchHHHHH
Confidence            99999999999944      678999999998765 45667766432    135666777776654433

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.71  E-value=2.3e-17  Score=189.82  Aligned_cols=200  Identities=20%  Similarity=0.212  Sum_probs=157.5

Q ss_pred             hHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh----hHHHHHHHHh-cCCCCCCCCCCCCchhhHHHHHH
Q 001365          575 VPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN----LRMQFGKLLC-LTSVSTPNYDPSNLSDISQLNSK  649 (1092)
Q Consensus       575 TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~----~~~~lvkLLl-~gadv~~~~~~~~~~~~~~ll~~  649 (1092)
                      .-+.-||..+.    ..+++.|+..|+.+|..+.+|.|+||.    .+..|+++|+ .|++++..+              
T Consensus        42 a~~l~A~~~~d----~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d--------------  103 (527)
T KOG0505|consen   42 AVFLEACSRGD----LEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQD--------------  103 (527)
T ss_pred             HHHHhcccccc----HHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccc--------------
Confidence            33555665553    556678899999999999999999996    4456777774 588887654              


Q ss_pred             HhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHH-------
Q 001365          650 ISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAA-------  722 (1092)
Q Consensus       650 I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~-------  722 (1092)
                              .++|||||.++..+++.                    ++++|+.+|+++-..+..|..|+-+|..       
T Consensus       104 --------~e~wtPlhaaascg~~~--------------------i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l  155 (527)
T KOG0505|consen  104 --------NEGWTPLHAAASCGYLN--------------------IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVL  155 (527)
T ss_pred             --------cccCCcchhhcccccHH--------------------HHHHHHHhhhhhhhccCCCCCccccccCcchhHHH
Confidence                    69999999988766553                    7788889999888888777777544321       


Q ss_pred             ------cCC-H------------hHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCC
Q 001365          723 ------LGY-D------------WALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYP  783 (1092)
Q Consensus       723 ------~G~-~------------~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~  783 (1092)
                            .|- +            .=++..+..|.+.++++..|.|+||.|+.+|..++.++||.+|.++++      +|.
T Consensus       156 ~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~------~D~  229 (527)
T KOG0505|consen  156 ETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNI------KDY  229 (527)
T ss_pred             HHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccc------ccc
Confidence                  121 1            113344557999999999999999999999999999999999999988      889


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCc-HHHHhh
Q 001365          784 SGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDV-AEVTGA  831 (1092)
Q Consensus       784 ~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~t-a~iaa~  831 (1092)
                      +||||||.|+.-|+.+++++|+++|     ++++.+...|.+ ..+|..
T Consensus       230 dgWtPlHAAA~Wg~~~~~elL~~~g-----a~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  230 DGWTPLHAAAHWGQEDACELLVEHG-----ADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             cCCCcccHHHHhhhHhHHHHHHHhh-----cccchhhhcCCCCccchhh
Confidence            9999999999999999999999988     789998888844 344443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.71  E-value=1.1e-16  Score=179.66  Aligned_cols=100  Identities=13%  Similarity=-0.023  Sum_probs=86.6

Q ss_pred             HHHHHHhCCCCCCccc-CCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCC
Q 001365          695 LVQKAAEGGKGPCVLD-HCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPG  773 (1092)
Q Consensus       695 LvklLle~GadvN~~D-~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin  773 (1092)
                      ++++|+++|+++|.++ ..|.||||+|+..|+.+++++|+.+|++++.+|..|+||||+|+..++.+++.++.  |..  
T Consensus        85 ivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~--  160 (300)
T PHA02884         85 AAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE--  160 (300)
T ss_pred             HHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc--
Confidence            5667888899999864 57999999999999999999999999999999999999999999999999886664  332  


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          774 ALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       774 ~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                             .+..+.+|++++   ++.+++++|+.++
T Consensus       161 -------~~~~~~~~~~~~---~n~ei~~~Lish~  185 (300)
T PHA02884        161 -------ISNFYKHPKKIL---INFDILKILVSHF  185 (300)
T ss_pred             -------ccccccChhhhh---ccHHHHHHHHHHH
Confidence                   346788999976   4789999999987

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.71  E-value=1.4e-17  Score=172.52  Aligned_cols=238  Identities=15%  Similarity=-0.004  Sum_probs=164.1

Q ss_pred             EEecCcCCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCccccc
Q 001365          528 ITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVAD  607 (1092)
Q Consensus       528 I~G~fl~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D  607 (1092)
                      +..+...+......+.-+...|-.+--..|++.    +....+..|..-+-.+...+.  +.+.....++...+ ++..|
T Consensus        21 ~~~p~~~ns~q~a~~~~~~~m~~t~p~~~l~~~----~s~~~~~lge~~~~~~~~s~n--sd~~v~s~~~~~~~-~~~t~   93 (296)
T KOG0502|consen   21 SALPVTMNSTQIAELFEQVEMGTTEPRCALTAE----ISALRNALGESLLTVAVRSGN--SDVAVQSAQLDPDA-IDETD   93 (296)
T ss_pred             hhCCCCCChHHHHHHHHHhhccccchhHHHHHH----HHHHHHhcCCcccchhhhcCC--cHHHHHhhccCCCC-CCCCC
Confidence            333444444444556666666666555555432    122334446666666665553  55654333333222 34456


Q ss_pred             CCCCcHHhh----hHHHHHHHH-hcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHH
Q 001365          608 NCGDITSEN----LRMQFGKLL-CLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKL  682 (1092)
Q Consensus       608 ~~G~TpL~~----~~~~lvkLL-l~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~l  682 (1092)
                      .+|+.+++.    ++...+..+ -.++..+...                      --+|+++..++...+          
T Consensus        94 p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs----------------------~~p~s~~slsVhql~----------  141 (296)
T KOG0502|consen   94 PEGWSALLVAAPCGSVDKVSTTLTNGARGNEVS----------------------LMPWSPLSLSVHQLH----------  141 (296)
T ss_pred             chhhhhhhhcCCCCCcceeeeeecccccCCccc----------------------cccCChhhHHHHHHH----------
Confidence            778888773    333222222 2222222211                      246677665543221          


Q ss_pred             HHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHH
Q 001365          683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTV  762 (1092)
Q Consensus       683 L~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV  762 (1092)
                                  +-..++....-+|..|+.|.|||.||+..|++.+|++||..|||+++..+.-.|+|.+|+..|..+||
T Consensus       142 ------------L~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV  209 (296)
T KOG0502|consen  142 ------------LDVVDLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIV  209 (296)
T ss_pred             ------------HHHHHHHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHH
Confidence                        11222233456899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHH
Q 001365          763 ASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAE  827 (1092)
Q Consensus       763 ~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~  827 (1092)
                      ++||.++.|+|.      -|.+|.|||-+|++.||.+|++.|++.|     ++++..+..|...+
T Consensus       210 ~lLL~r~vdVNv------yDwNGgTpLlyAvrgnhvkcve~Ll~sG-----Ad~t~e~dsGy~~m  263 (296)
T KOG0502|consen  210 ELLLTREVDVNV------YDWNGGTPLLYAVRGNHVKCVESLLNSG-----ADVTQEDDSGYWIM  263 (296)
T ss_pred             HHHHhcCCCcce------eccCCCceeeeeecCChHHHHHHHHhcC-----CCcccccccCCcHH
Confidence            999999999988      7799999999999999999999999999     78999999996543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.70  E-value=4.3e-17  Score=165.51  Aligned_cols=99  Identities=16%  Similarity=-0.021  Sum_probs=85.0

Q ss_pred             CCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCccc-CCCCcHHHHHHHcCCHhHHHHHHH-C
Q 001365          658 NDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLD-HCGQGVLHFAAALGYDWALEPTTV-A  735 (1092)
Q Consensus       658 ~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D-~~G~TpLH~AA~~G~~~iVk~LL~-~  735 (1092)
                      ..|+|+||.++..+....                 .-++++|++.|+++|.+| ..|.||||+|+..|+.+++++|+. .
T Consensus        53 ~~g~t~Lh~a~~~~~~~~-----------------~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~  115 (154)
T PHA02736         53 RHGKQCVHIVSNPDKADP-----------------QEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQP  115 (154)
T ss_pred             CCCCEEEEeecccCchhH-----------------HHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCC
Confidence            466777777666544321                 015677899999999998 499999999999999999999998 5


Q ss_pred             CCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCC
Q 001365          736 GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPG  773 (1092)
Q Consensus       736 Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin  773 (1092)
                      |++++.+|..|+||||+|+..|+.+++++|+.+|++++
T Consensus       116 g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        116 GVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999875

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.70  E-value=3.6e-17  Score=193.13  Aligned_cols=229  Identities=20%  Similarity=0.172  Sum_probs=177.9

Q ss_pred             cCCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCc
Q 001365          533 LMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDI  612 (1092)
Q Consensus       533 l~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~T  612 (1092)
                      +.++.+.|.||.||+.|+.+++++|+++.+..+  -++..|.+|||+|+.+|+  .+++  +.++.++..+|+....|.|
T Consensus        44 ~qd~~gfTalhha~Lng~~~is~llle~ea~ld--l~d~kg~~plhlaaw~g~--~e~v--kmll~q~d~~na~~~e~~t  117 (854)
T KOG0507|consen   44 LQDYSGFTLLHHAVLNGQNQISKLLLDYEALLD--LCDTKGILPLHLAAWNGN--LEIV--KMLLLQTDILNAVNIENET  117 (854)
T ss_pred             ccCccchhHHHHHHhcCchHHHHHHhcchhhhh--hhhccCcceEEehhhcCc--chHH--HHHHhcccCCCcccccCcC
Confidence            344567899999999999999999999988766  344779999999999986  5555  5677788889999999999


Q ss_pred             HHhh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHH
Q 001365          613 TSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLL  687 (1092)
Q Consensus       613 pL~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~  687 (1092)
                      |||.    +|.+++.+|+. +++....+                      +.+.++|-.|+..+....       .+.++
T Consensus       118 plhlaaqhgh~dvv~~Ll~~~adp~i~n----------------------ns~~t~ldlA~qfgr~~V-------vq~ll  168 (854)
T KOG0507|consen  118 PLHLAAQHGHLEVVFYLLKKNADPFIRN----------------------NSKETVLDLASRFGRAEV-------VQMLL  168 (854)
T ss_pred             ccchhhhhcchHHHHHHHhcCCCccccC----------------------cccccHHHHHHHhhhhHH-------HHHHh
Confidence            9994    88899988865 66554332                      345566666666655432       22222


Q ss_pred             HhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHH
Q 001365          688 KEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIA  767 (1092)
Q Consensus       688 k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe  767 (1092)
                      ..++   .+.++...|  -..++-.+.+|||+|+.+|+.++++.|+++|.|+|.....| |+||-|+.+|..++|.+|++
T Consensus       169 ~~~~---~~~~~~~~~--~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~  242 (854)
T KOG0507|consen  169 QKKF---PVQSSLRVG--DIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLE  242 (854)
T ss_pred             hhcc---chhhcccCC--CCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHh
Confidence            2222   233333344  34577789999999999999999999999999999987765 89999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCCHHHHHHHc---CcHHHHHHHHHcC
Q 001365          768 LGAAPGALSDPTPKYPSGRTPADLASSI---GHKGIAGYLAESD  808 (1092)
Q Consensus       768 ~GAdin~~~D~n~~D~~G~TPLhlAa~~---G~~eiv~~LLe~G  808 (1092)
                      .|.+..+      +|.+|+|+|.+-...   -..+++.++.+..
T Consensus       243 ~gin~h~------~n~~~qtaldil~d~~~~~~~ei~ga~~~~~  280 (854)
T KOG0507|consen  243 IGINTHI------KNQHGQTALDIIIDLQENRRYEIAGAVKNFE  280 (854)
T ss_pred             hcccccc------ccccchHHHHHHHhcchhhhhhhhhhhhccc
Confidence            9999887      889999999986553   3567777777653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.70  E-value=1.7e-16  Score=178.14  Aligned_cols=127  Identities=17%  Similarity=0.108  Sum_probs=109.1

Q ss_pred             ccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCccc----CCCCcHHHHHHHcCCHhHHH
Q 001365          655 KDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLD----HCGQGVLHFAAALGYDWALE  730 (1092)
Q Consensus       655 ~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D----~~G~TpLH~AA~~G~~~iVk  730 (1092)
                      ..|..++++++.++...+..                   -++++|+++|+++|.++    ..|.||||+|+..|+.++++
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~-------------------eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivk   87 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYT-------------------DIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAK   87 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCH-------------------HHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            44667777766655432211                   18889999999999974    58999999999999999999


Q ss_pred             HHHHCCCCcccc-CCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 001365          731 PTTVAGVNINFR-DVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE  806 (1092)
Q Consensus       731 ~LL~~Gadin~~-D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe  806 (1092)
                      +|+++||++|.+ +..|.||||+|+..|+.+++++|+++||+++.      +|..|.||||+|+..++.+++.++..
T Consensus        88 lLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~------kd~~G~TpL~~A~~~~~~~~~~~~~~  158 (300)
T PHA02884         88 LLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINI------QTNDMVTPIELALMICNNFLAFMICD  158 (300)
T ss_pred             HHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHhCChhHHHHhcC
Confidence            999999999996 46899999999999999999999999999988      77899999999999999998866653

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.69  E-value=6.2e-17  Score=178.09  Aligned_cols=144  Identities=24%  Similarity=0.241  Sum_probs=125.6

Q ss_pred             cCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCC-CCCCcccCCCCcHHHHHHHc-----CCHhHH
Q 001365          656 DENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGG-KGPCVLDHCGQGVLHFAAAL-----GYDWAL  729 (1092)
Q Consensus       656 ~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~G-advN~~D~~G~TpLH~AA~~-----G~~~iV  729 (1092)
                      .|.+|.|+||+++...++.                    +++.||+.| +++|.++.-|.||+++||..     -+..+|
T Consensus       264 aDsNGNTALHYsVSHaNF~--------------------VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV  323 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFD--------------------VVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVV  323 (452)
T ss_pred             hcCCCCeeeeeeecccchH--------------------HHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHH
Confidence            3579999999999877775                    778888877 68999999999999999864     357788


Q ss_pred             HHHHHCCCCccccC-CCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          730 EPTTVAGVNINFRD-VNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       730 k~LL~~Gadin~~D-~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      .-|...| |||++- ..|+|+|++|+.+|+.++|+.||..|||+|+      +|.+|.|+|++||.+||++||++||...
T Consensus       324 ~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNi------QDdDGSTALMCA~EHGhkEivklLLA~p  396 (452)
T KOG0514|consen  324 ERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNI------QDDDGSTALMCAAEHGHKEIVKLLLAVP  396 (452)
T ss_pred             HHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCcc------ccCCccHHHhhhhhhChHHHHHHHhccC
Confidence            8888876 778764 5799999999999999999999999999998      8899999999999999999999999864


Q ss_pred             CCCCcccCcccCCCCCcHHHHh
Q 001365          809 LSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       809 a~~h~adlnlkD~~G~ta~iaa  830 (1092)
                          .+|+.+.|.+|.|+...+
T Consensus       397 ----~cd~sLtD~DgSTAl~IA  414 (452)
T KOG0514|consen  397 ----SCDISLTDVDGSTALSIA  414 (452)
T ss_pred             ----cccceeecCCCchhhhhH
Confidence                479999999998774433

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.68  E-value=3.2e-17  Score=196.45  Aligned_cols=274  Identities=15%  Similarity=-0.001  Sum_probs=205.5

Q ss_pred             CcCCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCC
Q 001365          532 FLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGD  611 (1092)
Q Consensus       532 fl~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~  611 (1092)
                      -+.++.+.+||-+|+--||..||..|+.+.+++. .-.|..+.|+|.+||..|.  .+|+  ++|+..|++-..++....
T Consensus       784 ehrdkkgf~plImaatagh~tvV~~llk~ha~ve-aQsdrtkdt~lSlacsggr--~~vv--elLl~~gankehrnvsDy  858 (2131)
T KOG4369|consen  784 EHRDKKGFVPLIMAATAGHITVVQDLLKAHADVE-AQSDRTKDTMLSLACSGGR--TRVV--ELLLNAGANKEHRNVSDY  858 (2131)
T ss_pred             cccccccchhhhhhcccCchHHHHHHHhhhhhhh-hhcccccCceEEEecCCCc--chHH--HHHHHhhccccccchhhc
Confidence            4677889999999999999999999999999876 3447789999999999985  5555  689999999888888889


Q ss_pred             cHHhh----hHHHHHHHH-hcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCCh----HHHHHHH
Q 001365          612 ITSEN----LRMQFGKLL-CLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSS----EEVKEKL  682 (1092)
Q Consensus       612 TpL~~----~~~~lvkLL-l~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~----~~~~~~l  682 (1092)
                      |||-+    +..+++++| ..|+.++.......  .+..       |+...-+|.++-...+...+.+.    ..++..-
T Consensus       859 tPlsla~Sggy~~iI~~llS~GseInSrtgSkl--gisP-------Lmlatmngh~~at~~ll~~gsdiNaqIeTNrnTa  929 (2131)
T KOG4369|consen  859 TPLSLARSGGYTKIIHALLSSGSEINSRTGSKL--GISP-------LMLATMNGHQAATLSLLQPGSDINAQIETNRNTA  929 (2131)
T ss_pred             CchhhhcCcchHHHHHHHhhccccccccccccc--Ccch-------hhhhhhccccHHHHHHhcccchhccccccccccc
Confidence            99986    677788776 55887876544211  1111       11111122222222211111111    1111122


Q ss_pred             HHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccC--CCCccHHHHHHHcCCHH
Q 001365          683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRD--VNGWTALHWAAYCGRER  760 (1092)
Q Consensus       683 L~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D--~~G~TpLH~Aa~~G~~e  760 (1092)
                      |-.++-.+-.+ ++.+||...+++..+-+.|.|||+-+|..|++++-++||.+|+|+|+.-  ..--|+|-.++..||..
T Consensus       930 ltla~fqgr~e-vv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~k 1008 (2131)
T KOG4369|consen  930 LTLALFQGRPE-VVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTK 1008 (2131)
T ss_pred             eeeccccCcch-HHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchh
Confidence            22222222222 7889999999999999999999999999999999999999999999753  23459999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHhh
Q 001365          761 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGA  831 (1092)
Q Consensus       761 iV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa~  831 (1092)
                      .|.+|+...|.+.+      ++++|+|+|.+||..|+...+.+|++++     +|++..|+.-.+...++.
T Consensus      1009 fv~~lln~~atv~v------~NkkG~T~Lwla~~Gg~lss~~il~~~~-----ad~d~qdnr~~S~~maaf 1068 (2131)
T KOG4369|consen 1009 FVPKLLNGDATVRV------PNKKGCTVLWLASAGGALSSCPILVSSV-----ADADQQDNRTNSRTMAAF 1068 (2131)
T ss_pred             hhHHhhCCccceec------ccCCCCcccchhccCCccccchHHhhcc-----cChhhhhcccccccHHHH
Confidence            99999998888877      8899999999999999999999999988     788888887765555554

>PHA02741 hypothetical protein; Provisional

Probab=99.66  E-value=3.9e-16  Score=161.45  Aligned_cols=114  Identities=22%  Similarity=0.183  Sum_probs=101.5

Q ss_pred             CCcccCCCCcHHHHHHHcCCHhHHHHHHH------CCCCccccCCCCccHHHHHHHcCC----HHHHHHHHHcCCCCCCC
Q 001365          706 PCVLDHCGQGVLHFAAALGYDWALEPTTV------AGVNINFRDVNGWTALHWAAYCGR----ERTVASLIALGAAPGAL  775 (1092)
Q Consensus       706 vN~~D~~G~TpLH~AA~~G~~~iVk~LL~------~Gadin~~D~~G~TpLH~Aa~~G~----~eiV~~LLe~GAdin~~  775 (1092)
                      ++.+|..|.||||+||..|+.++|+.|+.      .|++++.+|..|+||||+||..|+    .+++++|+++|+++|. 
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~-   92 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINA-   92 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCC-
Confidence            45678899999999999999999999853      479999999999999999999999    5899999999999887 


Q ss_pred             CCCCCCCC-CCCCHHHHHHHcCcHHHHHHHHH-cCCCCCcccCcccCCCCCcHHHHh
Q 001365          776 SDPTPKYP-SGRTPADLASSIGHKGIAGYLAE-SDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       776 ~D~n~~D~-~G~TPLhlAa~~G~~eiv~~LLe-~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                           +|. .|+||||+|+..++.+++++|++ .|     ++++++|..|.+|...+
T Consensus        93 -----~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g-----~~~~~~n~~g~tpL~~A  139 (169)
T PHA02741         93 -----QEMLEGDTALHLAAHRRDHDLAEWLCCQPG-----IDLHFCNADNKSPFELA  139 (169)
T ss_pred             -----CCcCCCCCHHHHHHHcCCHHHHHHHHhCCC-----CCCCcCCCCCCCHHHHH
Confidence                 664 89999999999999999999997 47     68999999998775443

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.64  E-value=1.1e-15  Score=140.60  Aligned_cols=89  Identities=31%  Similarity=0.354  Sum_probs=81.1

Q ss_pred             HHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcC
Q 001365          717 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIG  796 (1092)
Q Consensus       717 LH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G  796 (1092)
                      ||+||..|+.++++.|++.|++++.    |.||||+||..|+.+++++|+++|++++.      +|..|+||||+|+.+|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINS------QDKNGNTALHYAAENG   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-------BSTTSSBHHHHHHHTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccc------cCCCCCCHHHHHHHcC
Confidence            8999999999999999999999887    99999999999999999999999999887      7799999999999999


Q ss_pred             cHHHHHHHHHcCCCCCcccCcccC
Q 001365          797 HKGIAGYLAESDLSSALSAISLNK  820 (1092)
Q Consensus       797 ~~eiv~~LLe~Ga~~h~adlnlkD  820 (1092)
                      +.+++++|+++|     ++++.+|
T Consensus        71 ~~~~~~~Ll~~g-----~~~~~~n   89 (89)
T PF12796_consen   71 NLEIVKLLLEHG-----ADVNIRN   89 (89)
T ss_dssp             HHHHHHHHHHTT-----T-TTSS-
T ss_pred             CHHHHHHHHHcC-----CCCCCcC
Confidence            999999999998     6677664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.61  E-value=8.2e-16  Score=164.45  Aligned_cols=119  Identities=27%  Similarity=0.262  Sum_probs=109.5

Q ss_pred             hCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 001365          701 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTP  780 (1092)
Q Consensus       701 e~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~  780 (1092)
                      +..-|.|.-|..|.+||||||..|+..+|+.||..|+.+|..+...-||||+||.+||.++|+.||+..+|+|+      
T Consensus        22 ~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvna------   95 (448)
T KOG0195|consen   22 DTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNA------   95 (448)
T ss_pred             CcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccch------
Confidence            44567888999999999999999999999999999999999999999999999999999999999999999998      


Q ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH-HHHh
Q 001365          781 KYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA-EVTG  830 (1092)
Q Consensus       781 ~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta-~iaa  830 (1092)
                      .+..|.|||||||.-|+..|++-|+.+|     +.+++.++.|.++ +.|.
T Consensus        96 vnehgntplhyacfwgydqiaedli~~g-----a~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   96 VNEHGNTPLHYACFWGYDQIAEDLISCG-----AAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             hhccCCCchhhhhhhcHHHHHHHHHhcc-----ceeeecccCCCCchhhhc
Confidence            5689999999999999999999999999     7799999999554 4443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.55  E-value=6.6e-15  Score=157.58  Aligned_cols=128  Identities=20%  Similarity=0.240  Sum_probs=111.7

Q ss_pred             cCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHC
Q 001365          656 DENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVA  735 (1092)
Q Consensus       656 ~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~  735 (1092)
                      .|+.|++|||.++.+++..                    +++.|+..|+.+|..+....||||+||..|+.++|..||+.
T Consensus        30 gddhgfsplhwaakegh~a--------------------ivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~   89 (448)
T KOG0195|consen   30 GDDHGFSPLHWAAKEGHVA--------------------IVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSR   89 (448)
T ss_pred             ccccCcchhhhhhhcccHH--------------------HHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHH
Confidence            3578999999998877653                    88899999999999999999999999999999999999999


Q ss_pred             CCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          736 GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       736 Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                      .+|+|+.+..|.||||+||..|...+++-|+..||.+++      .++.|.|||..|--.-..-+.++.-+.|-
T Consensus        90 kadvnavnehgntplhyacfwgydqiaedli~~ga~v~i------cnk~g~tpldkakp~l~~~l~e~aek~gq  157 (448)
T KOG0195|consen   90 KADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNI------CNKKGMTPLDKAKPMLKNTLLEIAEKHGQ  157 (448)
T ss_pred             hcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeee------cccCCCCchhhhchHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999988      77999999998854433334444445563

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.51  E-value=7.4e-14  Score=128.37  Aligned_cols=76  Identities=33%  Similarity=0.363  Sum_probs=71.2

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      +++.|++.+.+++.    |.||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        12 ~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~   87 (89)
T PF12796_consen   12 ILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNI   87 (89)
T ss_dssp             HHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTS
T ss_pred             HHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            78888999988887    89999999999999999999999999999999999999999999999999999999999987

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.50  E-value=2e-13  Score=129.55  Aligned_cols=122  Identities=30%  Similarity=0.334  Sum_probs=111.2

Q ss_pred             CCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCC
Q 001365          658 NDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGV  737 (1092)
Q Consensus       658 ~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Ga  737 (1092)
                      ..|+++|+.++..+...                    +++.|++.|.+++..+..|.||||+|+..+..++++.|+..|+
T Consensus         5 ~~g~t~l~~a~~~~~~~--------------------~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~   64 (126)
T cd00204           5 EDGRTPLHLAASNGHLE--------------------VVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA   64 (126)
T ss_pred             cCCCCHHHHHHHcCcHH--------------------HHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            57889999988766542                    7788899999989999999999999999999999999999999


Q ss_pred             CccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Q 001365          738 NINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLA  805 (1092)
Q Consensus       738 din~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LL  805 (1092)
                      +++..+..|.||+|+|+..++.+++++|+..|.+++.      .|..|.||+++|...++.+++++|+
T Consensus        65 ~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          65 DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA------RDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcc------cCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999999999999999999999977766      7789999999999999999999884

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.46  E-value=3.1e-13  Score=140.90  Aligned_cols=108  Identities=31%  Similarity=0.360  Sum_probs=101.9

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCC-----HhHHHHHHHCCC---CccccCCCCccHHHHHHHcCCHHHHHHHH
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGY-----DWALEPTTVAGV---NINFRDVNGWTALHWAAYCGRERTVASLI  766 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~-----~~iVk~LL~~Ga---din~~D~~G~TpLH~Aa~~G~~eiV~~LL  766 (1092)
                      ++..++..|++++.+|..|.||||+|+..|+     .+++++||+.|+   +.+.+|..|+||||+|+..|+.++|++|+
T Consensus        88 ~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll  167 (235)
T COG0666          88 IVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLL  167 (235)
T ss_pred             HHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHH
Confidence            4467889999999999999999999999999     999999999999   66677999999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          767 ALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       767 e~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      +.|++++.      .+..|.|++++|+..++..++..|++.+
T Consensus       168 ~~~~~~~~------~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         168 EAGADPNS------RNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             hcCCCCcc------cccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999887      6799999999999999999999999976

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.45  E-value=3.3e-13  Score=136.14  Aligned_cols=115  Identities=20%  Similarity=0.170  Sum_probs=100.6

Q ss_pred             cCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHC
Q 001365          656 DENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVA  735 (1092)
Q Consensus       656 ~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~  735 (1092)
                      .|.+++||||.|+..++++                    +++.|+..|++++++...||||||-||...+.+++..||.+
T Consensus        93 rD~D~YTpLHRAaYn~h~d--------------------iv~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqh  152 (228)
T KOG0512|consen   93 RDEDEYTPLHRAAYNGHLD--------------------IVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQH  152 (228)
T ss_pred             cccccccHHHHHHhcCchH--------------------HHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhc
Confidence            3579999999999988876                    78889999999999999999999999999999999999999


Q ss_pred             CCCccccCCCCccHHHHHHHcCCHH-HHHHHH-HcCCCCCCCCCCCCCCCCCCCHHHHHHHcC
Q 001365          736 GVNINFRDVNGWTALHWAAYCGRER-TVASLI-ALGAAPGALSDPTPKYPSGRTPADLASSIG  796 (1092)
Q Consensus       736 Gadin~~D~~G~TpLH~Aa~~G~~e-iV~~LL-e~GAdin~~~D~n~~D~~G~TPLhlAa~~G  796 (1092)
                      |+|||+.....+||||+||.+.+.. .+.+|+ ..+..+..      ++..+.||+++|-+.+
T Consensus       153 gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~------~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  153 GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGL------KNNLEETAFDIARRTS  209 (228)
T ss_pred             cCcccccccccchhhHHhhcccchHHHHHHHhhccccChhh------hcCccchHHHHHHHhh
Confidence            9999999999999999999877654 455555 34566555      7789999999998765

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.43  E-value=1.8e-12  Score=122.98  Aligned_cols=112  Identities=29%  Similarity=0.347  Sum_probs=101.4

Q ss_pred             cccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 001365          708 VLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRT  787 (1092)
Q Consensus       708 ~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~T  787 (1092)
                      .+|..|.||||+|+..|+.++++.|+..|++++.++..|.||||.|+..++.+++++|+..|++++.      .+..|.|
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~------~~~~~~~   75 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA------RDKDGNT   75 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc------cCCCCCC
Confidence            3567899999999999999999999999999999999999999999999999999999999987766      6789999


Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          788 PADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       788 PLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      |+|+|+..++.+++++|+.+|     .+++..+..|.++...+
T Consensus        76 ~l~~a~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~~l~~~  113 (126)
T cd00204          76 PLHLAARNGNLDVVKLLLKHG-----ADVNARDKDGRTPLHLA  113 (126)
T ss_pred             HHHHHHHcCcHHHHHHHHHcC-----CCCcccCCCCCCHHHHH
Confidence            999999999999999999988     56888888886664443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.40  E-value=1.7e-12  Score=156.11  Aligned_cols=142  Identities=22%  Similarity=0.190  Sum_probs=115.6

Q ss_pred             CCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcc---------cC--------------CCC
Q 001365          658 NDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVL---------DH--------------CGQ  714 (1092)
Q Consensus       658 ~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~---------D~--------------~G~  714 (1092)
                      -.|.|+||.|+...+..                    ++++|++.||||+++         |.              .|.
T Consensus       182 Y~GqSaLHiAIv~~~~~--------------------~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGE  241 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAE--------------------LVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGE  241 (782)
T ss_pred             hcCcchHHHHHHhccHH--------------------HHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeecc
Confidence            35778888777644432                    778888888888764         11              367


Q ss_pred             cHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 001365          715 GVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASS  794 (1092)
Q Consensus       715 TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~  794 (1092)
                      .||-+||..+..+++++|+++|||++++|.+|+|.||..+..-..+|-.++|++|++ .   ....+|+.|-|||-+|+.
T Consensus       242 yPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~-~---l~~v~N~qgLTPLtLAak  317 (782)
T KOG3676|consen  242 YPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN-A---LEHVRNNQGLTPLTLAAK  317 (782)
T ss_pred             CchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC-c---cccccccCCCChHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999 1   123488999999999999


Q ss_pred             cCcHHHHHHHHHc-C--------CCCCcccCcccCCCC
Q 001365          795 IGHKGIAGYLAES-D--------LSSALSAISLNKKDG  823 (1092)
Q Consensus       795 ~G~~eiv~~LLe~-G--------a~~h~adlnlkD~~G  823 (1092)
                      .|..++.+.+++. .        .++.+-+++..|.-|
T Consensus       318 lGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~  355 (782)
T KOG3676|consen  318 LGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIG  355 (782)
T ss_pred             hhhHHHHHHHHHhhcccceeecccccccccchhccccc
Confidence            9999999999998 2        233445555555543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.36  E-value=1.1e-12  Score=149.53  Aligned_cols=118  Identities=28%  Similarity=0.309  Sum_probs=101.4

Q ss_pred             HHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHH
Q 001365          683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTV  762 (1092)
Q Consensus       683 L~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV  762 (1092)
                      |..++...+.  +++.++..--|+..-+..|.|+||-|+..||.+||++||+.|+|||+.|.+||||||+||.+++.-||
T Consensus       555 LDaaLeGEld--lVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  555 LDAALEGELD--LVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HhhhhcchHH--HHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            3444444444  67777777778988999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCCCCCCCHHHHHH--HcCcHHHHHHHHHc
Q 001365          763 ASLIALGAAPGALSDPTPKYPSGRTPADLAS--SIGHKGIAGYLAES  807 (1092)
Q Consensus       763 ~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa--~~G~~eiv~~LLe~  807 (1092)
                      +.|++.||.+-+.+     -.++.||..-+-  ..|+.+|.+||...
T Consensus       633 kqLVe~GaavfAsT-----lSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  633 KQLVESGAAVFAST-----LSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHhccceEEeee-----cccccchhhhcchhhhhHHHHHHHHHHH
Confidence            99999999987744     367889988764  46899999999853

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.34  E-value=2.8e-12  Score=117.55  Aligned_cols=102  Identities=25%  Similarity=0.261  Sum_probs=82.0

Q ss_pred             HHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHc
Q 001365          716 VLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSI  795 (1092)
Q Consensus       716 pLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~  795 (1092)
                      -+.|++.+|..+-|+-.+..|.++|..= .|+||||+||-+|..+++++|+..||+++.      +|+.|-|||.-|+..
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~------kDKygITPLLsAvwE   77 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQD------KDKYGITPLLSAVWE   77 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCC------ccccCCcHHHHHHHH
Confidence            4677888888888888888888877554 788888888888888888888888888877      778888888888888


Q ss_pred             CcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHH
Q 001365          796 GHKGIAGYLAESDLSSALSAISLNKKDGDVAEVT  829 (1092)
Q Consensus       796 G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~ia  829 (1092)
                      ||.+||++|+.+|     ++..++..+|.+..-|
T Consensus        78 GH~~cVklLL~~G-----Adrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   78 GHRDCVKLLLQNG-----ADRTIHAPDGTALIEA  106 (117)
T ss_pred             hhHHHHHHHHHcC-----cccceeCCCchhHHhh
Confidence            8888888888888     6677777777665433

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.33  E-value=4.3e-12  Score=157.63  Aligned_cols=106  Identities=25%  Similarity=0.284  Sum_probs=86.8

Q ss_pred             cHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 001365          715 GVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASS  794 (1092)
Q Consensus       715 TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~  794 (1092)
                      +.||.||..|+.++|++|++.|+++|.+|..|+||||+||..|+.++|++||++|+++|.      +|..|.||||+|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~------~d~~G~TpLh~A~~  157 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL------LDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHH
Confidence            358888999999999999999999999999999999999999999999999999998877      77889999999999


Q ss_pred             cCcHHHHHHHHHcCCCC--CcccCcccCCCCCcH
Q 001365          795 IGHKGIAGYLAESDLSS--ALSAISLNKKDGDVA  826 (1092)
Q Consensus       795 ~G~~eiv~~LLe~Ga~~--h~adlnlkD~~G~ta  826 (1092)
                      .|+.+++++|++++...  ..++.+..+..|.++
T Consensus       158 ~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~  191 (664)
T PTZ00322        158 NGFREVVQLLSRHSQCHFELGANAKPDSFTGKPP  191 (664)
T ss_pred             CCcHHHHHHHHhCCCcccccCCCCCccccCCCCc
Confidence            99999999999872111  125666666666544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.30  E-value=2e-12  Score=109.90  Aligned_cols=55  Identities=40%  Similarity=0.577  Sum_probs=20.4

Q ss_pred             HHHCC-CCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHH
Q 001365          732 TTVAG-VNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLA  792 (1092)
Q Consensus       732 LL~~G-adin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlA  792 (1092)
                      ||++| +++|.+|..|.||||+||..|+.++|++||+.|+++++      +|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~------~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNA------KDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---------TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCC------CcCCCCCHHHhC
Confidence            44555 55556666666666666666666666666655665555      555566666554

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.28  E-value=2.6e-11  Score=126.39  Aligned_cols=114  Identities=27%  Similarity=0.268  Sum_probs=102.1

Q ss_pred             CCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCC-----HHHHHHHHHcCC--CCCCCCC
Q 001365          705 GPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR-----ERTVASLIALGA--APGALSD  777 (1092)
Q Consensus       705 dvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~-----~eiV~~LLe~GA--din~~~D  777 (1092)
                      .....+..+.+++|.++..+...++.+|+..|++++.+|..|.||||+|+..|+     .+++++||+.|+  +++    
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~----  140 (235)
T COG0666          65 HLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVN----  140 (235)
T ss_pred             ccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCc----
Confidence            345567789999999999999999999999999999999999999999999999     999999999999  332    


Q ss_pred             CCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHH
Q 001365          778 PTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEV  828 (1092)
Q Consensus       778 ~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~i  828 (1092)
                       +.+|..|.||||+|+..|+.+++++|++.|     ++++..+..|.++..
T Consensus       141 -~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~-----~~~~~~~~~g~t~l~  185 (235)
T COG0666         141 -NLRDEDGNTPLHWAALNGDADIVELLLEAG-----ADPNSRNSYGVTALD  185 (235)
T ss_pred             -cccCCCCCchhHHHHHcCchHHHHHHHhcC-----CCCcccccCCCcchh
Confidence             337899999999999999999999999998     678888888866533

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.27  E-value=3.7e-12  Score=108.27  Aligned_cols=55  Identities=31%  Similarity=0.384  Sum_probs=33.7

Q ss_pred             HHhCC-CCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHH
Q 001365          699 AAEGG-KGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWA  753 (1092)
Q Consensus       699 Lle~G-advN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~A  753 (1092)
                      |+++| +++|.+|..|.||||+||..|+.++|++||..|+|++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            46677 89999999999999999999999999999999999999999999999998

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.26  E-value=8.4e-12  Score=114.47  Aligned_cols=90  Identities=28%  Similarity=0.303  Sum_probs=79.0

Q ss_pred             HHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 001365          696 VQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGAL  775 (1092)
Q Consensus       696 vklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~  775 (1092)
                      ++.....|.++|..- .|+||||+||..|.+.++++|+..||+++.+|+.|-|||.-|+..||.+||++||..||+-.. 
T Consensus        18 Vk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~-   95 (117)
T KOG4214|consen   18 VKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTI-   95 (117)
T ss_pred             HHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccce-
Confidence            444555677887554 899999999999999999999999999999999999999999999999999999999999766 


Q ss_pred             CCCCCCCCCCCCHHHHH
Q 001365          776 SDPTPKYPSGRTPADLA  792 (1092)
Q Consensus       776 ~D~n~~D~~G~TPLhlA  792 (1092)
                           +.++|.+.+..+
T Consensus        96 -----~~PdG~~~~eat  107 (117)
T KOG4214|consen   96 -----HAPDGTALIEAT  107 (117)
T ss_pred             -----eCCCchhHHhhc
Confidence                 568888777644

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.25  E-value=1.8e-11  Score=131.76  Aligned_cols=102  Identities=25%  Similarity=0.232  Sum_probs=92.1

Q ss_pred             HHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCcccc-CCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 001365          699 AAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFR-DVNGWTALHWAAYCGRERTVASLIALGAAPGALSD  777 (1092)
Q Consensus       699 Lle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~-D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D  777 (1092)
                      |+..--++|.+|..|+|||..|+..|+.++|++||+.|+|||.. +..+.||||+||..|+.++.++|++.||.+..   
T Consensus        31 LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~---  107 (396)
T KOG1710|consen   31 LLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYL---  107 (396)
T ss_pred             HHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCcccc---
Confidence            34433469999999999999999999999999999999999964 66799999999999999999999999999888   


Q ss_pred             CCCCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 001365          778 PTPKYPSGRTPADLASSIGHKGIAGYLAE  806 (1092)
Q Consensus       778 ~n~~D~~G~TPLhlAa~~G~~eiv~~LLe  806 (1092)
                         .|.-|+|+..+|+.-||.++|..+-.
T Consensus       108 ---vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen  108 ---VNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             ---ccchhhhHHHHHHHhcchHHHHHHhc
Confidence               56889999999999999999988754

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.25  E-value=1.1e-11  Score=104.23  Aligned_cols=54  Identities=35%  Similarity=0.411  Sum_probs=30.5

Q ss_pred             CCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHH
Q 001365          713 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLI  766 (1092)
Q Consensus       713 G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LL  766 (1092)
                      |+||||+||..|+.+++++|+++|+++|.+|.+|+||||+||..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456666666666666666666666666666666666666666666666666654

...

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.23  E-value=3.7e-11  Score=144.80  Aligned_cols=112  Identities=21%  Similarity=0.179  Sum_probs=99.5

Q ss_pred             CCCCcHHHHHHHcCCHhHHHHHHHCCCCccccC---------C--------------CCccHHHHHHHcCCHHHHHHHHH
Q 001365          711 HCGQGVLHFAAALGYDWALEPTTVAGVNINFRD---------V--------------NGWTALHWAAYCGRERTVASLIA  767 (1092)
Q Consensus       711 ~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D---------~--------------~G~TpLH~Aa~~G~~eiV~~LLe  767 (1092)
                      ..|+||||+|+.+.+.++|++||+.||||+++-         .              .|..||-+||..++.+||++|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            479999999999999999999999999999862         1              46789999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH-HHHhh
Q 001365          768 LGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA-EVTGA  831 (1092)
Q Consensus       768 ~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta-~iaa~  831 (1092)
                      +|||+++      +|..|+|.||..+..-..++-.+++++|++   +...+.|+.|-|| .+++.
T Consensus       262 ~gAd~~a------qDS~GNTVLH~lVi~~~~~My~~~L~~ga~---~l~~v~N~qgLTPLtLAak  317 (782)
T KOG3676|consen  262 HGADPNA------QDSNGNTVLHMLVIHFVTEMYDLALELGAN---ALEHVRNNQGLTPLTLAAK  317 (782)
T ss_pred             cCCCCCc------cccCCChHHHHHHHHHHHHHHHHHHhcCCC---ccccccccCCCChHHHHHH
Confidence            9999988      999999999999999999999999999954   4588999999554 45544

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.22  E-value=5.2e-11  Score=148.13  Aligned_cols=93  Identities=26%  Similarity=0.222  Sum_probs=85.5

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHc------
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL------  768 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~------  768 (1092)
                      +++.|++.|+++|.+|..|+||||+||..|+.++|++||++|+++|.+|..|+||||+|+..|+.++|++|+.+      
T Consensus        97 ~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~  176 (664)
T PTZ00322         97 GARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFE  176 (664)
T ss_pred             HHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccc
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999998      


Q ss_pred             -CCCCCCCCCCCCCCCCCCCHHHHHH
Q 001365          769 -GAAPGALSDPTPKYPSGRTPADLAS  793 (1092)
Q Consensus       769 -GAdin~~~D~n~~D~~G~TPLhlAa  793 (1092)
                       |++++.      .+..|.+|+..+.
T Consensus       177 ~ga~~~~------~~~~g~~~~~~~~  196 (664)
T PTZ00322        177 LGANAKP------DSFTGKPPSLEDS  196 (664)
T ss_pred             cCCCCCc------cccCCCCccchhh
Confidence             555544      7788888877654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.20  E-value=2.7e-11  Score=101.88  Aligned_cols=54  Identities=39%  Similarity=0.559  Sum_probs=46.2

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Q 001365          746 GWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLA  805 (1092)
Q Consensus       746 G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LL  805 (1092)
                      |+||||+||..|+.+++++|+++|+++|.      +|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~------~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINA------QDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-------B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHccCHHHHHHHC
Confidence            79999999999999999999999999887      6789999999999999999999996

...

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=99.11  E-value=2e-10  Score=141.83  Aligned_cols=100  Identities=22%  Similarity=0.198  Sum_probs=82.6

Q ss_pred             CCcccCCCCcHHHHHHHcCCHhHHHHHHHC-CCCccccCCCCccHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCCC
Q 001365          706 PCVLDHCGQGVLHFAAALGYDWALEPTTVA-GVNINFRDVNGWTALHWAAYCGRERTVASLI-ALGAAPGALSDPTPKYP  783 (1092)
Q Consensus       706 vN~~D~~G~TpLH~AA~~G~~~iVk~LL~~-Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LL-e~GAdin~~~D~n~~D~  783 (1092)
                      +......|+|.||+++..++.|+++.+++- |-.....|.+|.-.+|+ |..++.+.+-+|+ -.|..+++      +|.
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i------~D~  639 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDI------RDR  639 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeeccccccc------ccC
Confidence            445667899999999999999999999996 77777788888888999 4555556555554 44777766      889


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCC
Q 001365          784 SGRTPADLASSIGHKGIAGYLAESDLSSA  812 (1092)
Q Consensus       784 ~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h  812 (1092)
                      .|+||||+|+..|+..++..|++.|+.+.
T Consensus       640 ~G~tpL~wAa~~G~e~l~a~l~~lga~~~  668 (975)
T KOG0520|consen  640 NGWTPLHWAAFRGREKLVASLIELGADPG  668 (975)
T ss_pred             CCCcccchHhhcCHHHHHHHHHHhccccc
Confidence            99999999999999999999999886644

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.10  E-value=1.5e-10  Score=132.52  Aligned_cols=87  Identities=29%  Similarity=0.195  Sum_probs=82.5

Q ss_pred             HHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcC
Q 001365          717 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIG  796 (1092)
Q Consensus       717 LH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G  796 (1092)
                      |.-|+..|-+++|+-.+..--|+...+..|-||||-|++.||.+||++||+.|+++|+      .|.+||||||+|+.++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa------~DSdGWTPLHCAASCN  627 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNA------ADSDGWTPLHCAASCN  627 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccC------ccCCCCchhhhhhhcC
Confidence            4557888999999999999999999999999999999999999999999999999998      8899999999999999


Q ss_pred             cHHHHHHHHHcCC
Q 001365          797 HKGIAGYLAESDL  809 (1092)
Q Consensus       797 ~~eiv~~LLe~Ga  809 (1092)
                      +..+++.|++.|+
T Consensus       628 nv~~ckqLVe~Ga  640 (752)
T KOG0515|consen  628 NVPMCKQLVESGA  640 (752)
T ss_pred             chHHHHHHHhccc
Confidence            9999999999994

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.99  E-value=1.2e-09  Score=117.98  Aligned_cols=109  Identities=23%  Similarity=0.195  Sum_probs=96.7

Q ss_pred             CCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHH
Q 001365          713 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLA  792 (1092)
Q Consensus       713 G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlA  792 (1092)
                      -..||.-+...|..+....||+.--++|.+|..|+|+|..|++.|+.++|++||+.|||+|..     ++..+.||||+|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~-----qhg~~YTpLmFA   86 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDK-----QHGTLYTPLMFA   86 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcc-----cccccccHHHHH
Confidence            357899999999999999999986679999999999999999999999999999999999974     678899999999


Q ss_pred             HHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH-HHHhh
Q 001365          793 SSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA-EVTGA  831 (1092)
Q Consensus       793 a~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta-~iaa~  831 (1092)
                      +..|+.++.++|++.|     +.+.+.|.-|.|+ ..++.
T Consensus        87 ALSGn~dvcrllldaG-----a~~~~vNsvgrTAaqmAAF  121 (396)
T KOG1710|consen   87 ALSGNQDVCRLLLDAG-----ARMYLVNSVGRTAAQMAAF  121 (396)
T ss_pred             HHcCCchHHHHHHhcc-----CccccccchhhhHHHHHHH
Confidence            9999999999999999     5677888888554 55554

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.69  E-value=4.8e-08  Score=111.84  Aligned_cols=95  Identities=33%  Similarity=0.311  Sum_probs=85.0

Q ss_pred             CcccCCCCcH------HHHHHHcCCHhHHHHHHHCCCCccccCC-CCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 001365          707 CVLDHCGQGV------LHFAAALGYDWALEPTTVAGVNINFRDV-NGWTALHWAAYCGRERTVASLIALGAAPGALSDPT  779 (1092)
Q Consensus       707 N~~D~~G~Tp------LH~AA~~G~~~iVk~LL~~Gadin~~D~-~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n  779 (1092)
                      -.+|.+|.|.      ||-.++.|+.+..--||..||++|..+. .|.||||+||..|+.--+++|+-+|||+++     
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a-----  195 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGA-----  195 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCC-----
Confidence            3466666654      8999999999999999999999999875 599999999999999999999999999988     


Q ss_pred             CCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 001365          780 PKYPSGRTPADLASSIGHKGIAGYLAES  807 (1092)
Q Consensus       780 ~~D~~G~TPLhlAa~~G~~eiv~~LLe~  807 (1092)
                       .|.+|.||+.+|-..||.++++.|++.
T Consensus       196 -~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  196 -QDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             -CCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence             789999999999999999998888763

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.65  E-value=1.4e-08  Score=121.41  Aligned_cols=83  Identities=27%  Similarity=0.363  Sum_probs=78.9

Q ss_pred             CCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCC-CCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 001365          706 PCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDV-NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPS  784 (1092)
Q Consensus       706 vN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~-~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~  784 (1092)
                      .|.+|..|+|+||+|+..|...+++.||.+|+|++.+|. .||||||-|.+.|+.+++-+||.+|+...+      +|++
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i------~Dke  118 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRI------KDKE  118 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEE------eccc
Confidence            788999999999999999999999999999999999996 599999999999999999999999999887      8899


Q ss_pred             CCCHHHHHHH
Q 001365          785 GRTPADLASS  794 (1092)
Q Consensus       785 G~TPLhlAa~  794 (1092)
                      |..||.+-++
T Consensus       119 glsplq~~~r  128 (1267)
T KOG0783|consen  119 GLSPLQFLSR  128 (1267)
T ss_pred             CCCHHHHHhh
Confidence            9999998876

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.58  E-value=4.5e-08  Score=111.73  Aligned_cols=94  Identities=31%  Similarity=0.334  Sum_probs=85.5

Q ss_pred             ccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCCCCCC
Q 001365          709 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL-GAAPGALSDPTPKYPSGRT  787 (1092)
Q Consensus       709 ~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~-GAdin~~~D~n~~D~~G~T  787 (1092)
                      ++.++..++++||..|.+..++-+.-.|.|++.+|.+.+|+||.||..|++++|++||+. +.++      +.+|..|+|
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~------~~kDRw~rt  575 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDP------DPKDRWGRT  575 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCC------ChhhccCCC
Confidence            345677899999999999999999999999999999999999999999999999999986 5554      449999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHcC
Q 001365          788 PADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       788 PLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      ||+-|...+|.+++++|-+.-
T Consensus       576 PlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  576 PLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             cchHhHhcCcHHHHHHHHHHh
Confidence            999999999999999999854

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=98.53  E-value=1.9e-07  Score=115.93  Aligned_cols=90  Identities=29%  Similarity=0.305  Sum_probs=76.9

Q ss_pred             chhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Q 001365          917 DEPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETLT  996 (1092)
Q Consensus       917 ~~~l~~AA~~IQ~~~Rg~~~Rk~fl~~r~~av~IQa~~Rg~~aRk~y~~~~~a~~~iqk~irr~r~kr~glrg~~~~~~~  996 (1092)
                      .+++..+++.||+.+|+|..||.|+.+|++++.||+++||+++|+... +.+|+..+|+.+|+|..+|+           
T Consensus       669 ~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~~-~~~aai~~q~~~r~~~~r~~-----------  736 (862)
T KOG0160|consen  669 SDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRETE-REAAAIGIQKECRSYLNRRR-----------  736 (862)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhH-HHHHHHHhHHHHHHHHHHHH-----------
Confidence            467888999999999999999999999999999999999999998554 55788899999998744332           


Q ss_pred             ccccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q 001365          997 ASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARD 1043 (1092)
Q Consensus       997 ~~~~~~~~~~~~~~~~~~~~~rkq~~~~~~~A~~~vQs~~R~~~AR~ 1043 (1092)
                                               +.++..|++.||+++|++.+|.
T Consensus       737 -------------------------y~~~~~~~~~~qs~~r~~~~r~  758 (862)
T KOG0160|consen  737 -------------------------YRALIPASITIQSGVRAMLARN  758 (862)
T ss_pred             -------------------------HHHHHHHHHHHHHHHHHHHhcc
Confidence                                     3345688999999999999987

>PF13606 Ank_3: Ankyrin repeat

Probab=98.50  E-value=1.2e-07  Score=70.51  Aligned_cols=30  Identities=43%  Similarity=0.442  Sum_probs=24.2

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          745 NGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       745 ~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      +|+||||+||..|+.++|++||++|+|+|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            478888888888888888888888888763

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.42  E-value=7e-07  Score=103.34  Aligned_cols=121  Identities=25%  Similarity=0.315  Sum_probs=102.3

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCC--ccccCCCCccHHHHHHHcC
Q 001365          680 EKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVN--INFRDVNGWTALHWAAYCG  757 (1092)
Q Consensus       680 ~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gad--in~~D~~G~TpLH~Aa~~G  757 (1092)
                      ..+|..++...+.. +. -+-..|-++-.++.+..|.||+|+..|+-++|++||++|..  ++..|..|.|+||-||..+
T Consensus       868 eeil~av~~~D~~k-lq-E~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  868 EEILRAVLSSDLMK-LQ-ETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             HHHHHHHHhccHHH-HH-HHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhc
Confidence            34566666655442 22 23345667778899999999999999999999999999875  6778899999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          758 RERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       758 ~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      +..++.+|++.||.+.-      .|..|.||-.-|-..|..+++.||-..-
T Consensus       946 ~r~vc~~lvdagasl~k------td~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  946 NRAVCQLLVDAGASLRK------TDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             chHHHHHHHhcchhhee------cccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            99999999999999866      7799999999999999999999998654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.37  E-value=1e-06  Score=102.80  Aligned_cols=89  Identities=26%  Similarity=0.127  Sum_probs=57.1

Q ss_pred             HHHHHHcCCHhHHHHHHHCCCCc--c--ccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHH
Q 001365          717 LHFAAALGYDWALEPTTVAGVNI--N--FRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLA  792 (1092)
Q Consensus       717 LH~AA~~G~~~iVk~LL~~Gadi--n--~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlA  792 (1092)
                      |.-|+.-..+..+-+||.+|-..  |  .-+.+|+||||+||..|++.+.++||-+|+|+-+      +|..|+|||.||
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~------rda~g~t~l~ya  701 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMA------RDAHGRTALFYA  701 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcccee------cccCCchhhhhH
Confidence            44445555566666666665432  2  2345567777777777777777777777776655      666777777777


Q ss_pred             HHcCcHHHHHHHHHcCCCC
Q 001365          793 SSIGHKGIAGYLAESDLSS  811 (1092)
Q Consensus       793 a~~G~~eiv~~LLe~Ga~~  811 (1092)
                      -..|..+|+.+|+.+|+..
T Consensus       702 r~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  702 RQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             hhcccHHHHHHHHHcCCCc
Confidence            7777777777777776653

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.34  E-value=6.1e-07  Score=67.92  Aligned_cols=30  Identities=40%  Similarity=0.480  Sum_probs=23.3

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          745 NGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       745 ~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      +|+||||+||..|+.++|++||++|+++++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            477788888888888888888877777776

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.30  E-value=2.8e-07  Score=110.65  Aligned_cols=78  Identities=24%  Similarity=0.227  Sum_probs=72.4

Q ss_pred             ccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCc
Q 001365          739 INFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKY-PSGRTPADLASSIGHKGIAGYLAESDLSSALSAIS  817 (1092)
Q Consensus       739 in~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D-~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adln  817 (1092)
                      +|.+|..|+|+||+|+..|..++++.||.+|++++.      +| ..|+||||-|...|+.+++-+||.+|     ..+.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~v------qD~ESG~taLHRaiyyG~idca~lLL~~g-----~SL~  113 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFV------QDEESGYTALHRAIYYGNIDCASLLLSKG-----RSLR  113 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeee------ccccccchHhhHhhhhchHHHHHHHHhcC-----CceE
Confidence            688999999999999999999999999999999988      44 46999999999999999999999999     6799


Q ss_pred             ccCCCCCcHH
Q 001365          818 LNKKDGDVAE  827 (1092)
Q Consensus       818 lkD~~G~ta~  827 (1092)
                      ++|++|..|.
T Consensus       114 i~Dkeglspl  123 (1267)
T KOG0783|consen  114 IKDKEGLSPL  123 (1267)
T ss_pred             EecccCCCHH
Confidence            9999997663

>PF13606 Ank_3: Ankyrin repeat

Probab=98.22  E-value=1.2e-06  Score=65.16  Aligned_cols=30  Identities=27%  Similarity=0.245  Sum_probs=28.5

Q ss_pred             CCCcHHHHHHHcCCHhHHHHHHHCCCCccc
Q 001365          712 CGQGVLHFAAALGYDWALEPTTVAGVNINF  741 (1092)
Q Consensus       712 ~G~TpLH~AA~~G~~~iVk~LL~~Gadin~  741 (1092)
                      +|+||||+||..|+.++|++||++|+|||.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999984

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.21  E-value=2.3e-06  Score=99.84  Aligned_cols=68  Identities=25%  Similarity=0.319  Sum_probs=55.0

Q ss_pred             hCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHc
Q 001365          701 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL  768 (1092)
Q Consensus       701 e~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~  768 (1092)
                      +.+..++.+|..|.||||+|+..|+...++.|+.+||++..++.+||+|||-|+..|+..++..+|.+
T Consensus        43 ~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   43 KVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             hhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            34556777888888888888888888888888888888888888888888888888888877777654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.20  E-value=2.8e-06  Score=99.29  Aligned_cols=94  Identities=24%  Similarity=0.286  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhCCCC--CCc--ccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHH
Q 001365          678 VKEKLVQKLLKEKLQVWLVQKAAEGGKG--PCV--LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWA  753 (1092)
Q Consensus       678 ~~~~lL~~a~k~~l~~~LvklLle~Gad--vN~--~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~A  753 (1092)
                      ...+++.+...+.+.  .+-+|+.+|..  +|.  -+.+|+|+||+||..|+..+.++||.+|+|+-++|.+|+|||.||
T Consensus       624 lgqqLl~A~~~~Dl~--t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~ya  701 (749)
T KOG0705|consen  624 LGQQLLRAVAAEDLQ--TAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYA  701 (749)
T ss_pred             hHHHHHHHHHHHHHH--HHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhH
Confidence            345667666676666  44568888864  333  466789999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCC
Q 001365          754 AYCGRERTVASLIALGAAPG  773 (1092)
Q Consensus       754 a~~G~~eiV~~LLe~GAdin  773 (1092)
                      -..|..+|+.+||.+|+-..
T Consensus       702 r~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  702 RQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             hhcccHHHHHHHHHcCCCcc
Confidence            99999999999999998643

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.20  E-value=1.7e-06  Score=65.42  Aligned_cols=33  Identities=33%  Similarity=0.341  Sum_probs=31.3

Q ss_pred             CCCcHHHHHHHcCCHhHHHHHHHCCCCccccCC
Q 001365          712 CGQGVLHFAAALGYDWALEPTTVAGVNINFRDV  744 (1092)
Q Consensus       712 ~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~  744 (1092)
                      +|.||||+||..|+.++|++||++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.10  E-value=7.4e-06  Score=84.89  Aligned_cols=66  Identities=38%  Similarity=0.420  Sum_probs=45.1

Q ss_pred             CCCccccCCCCccHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 001365          736 GVNINFRDVNGWTALHWAAYCGRERTVASLIALG-AAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAES  807 (1092)
Q Consensus       736 Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~G-Adin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~  807 (1092)
                      +.+||++|..|||||+.||..|..+.|.+|+.+| +.+.+      .|..|.+++.+|-..|+.++|..|-+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv------~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGV------TDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccc------cccccchHHHHHHhcChHHHHHHHHHH
Confidence            4566777777777777777777777777777776 55555      556677777777777777777776664

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.10  E-value=2.2e-06  Score=98.24  Aligned_cols=77  Identities=23%  Similarity=0.066  Sum_probs=70.1

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHC-CCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVA-GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA  771 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~-Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAd  771 (1092)
                      .++.+.-.|.|++.+|.+.+|+||.||..|++++|++||+. +++++.+|..|+|||--|..++|.+++++|-+.-..
T Consensus       521 alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~~  598 (622)
T KOG0506|consen  521 ALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQYP  598 (622)
T ss_pred             HHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhcc
Confidence            44556667999999999999999999999999999999985 999999999999999999999999999999886543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.09  E-value=8e-06  Score=94.14  Aligned_cols=85  Identities=19%  Similarity=0.203  Sum_probs=72.2

Q ss_pred             HHHHHHhhhHHHHHHHHHhCCCCCCcccC-CCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHH
Q 001365          683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDH-CGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERT  761 (1092)
Q Consensus       683 L~~a~k~~l~~~LvklLle~GadvN~~D~-~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~ei  761 (1092)
                      ||..++....+.++ .|+..|+++|..+. .|.||||.||..|..--+++|+-+|||+++.|.+|+||+-+|-..||-++
T Consensus       137 LhasvRt~nlet~L-Rll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  137 LHSSVRTGNLETCL-RLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHhhcccHHHHH-HHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            55555555544344 46788999999875 69999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHc
Q 001365          762 VASLIAL  768 (1092)
Q Consensus       762 V~~LLe~  768 (1092)
                      .+-|++.
T Consensus       216 aeRl~e~  222 (669)
T KOG0818|consen  216 AERLVEI  222 (669)
T ss_pred             HHHHHHH
Confidence            8777763

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.09  E-value=5.3e-06  Score=96.92  Aligned_cols=87  Identities=28%  Similarity=0.289  Sum_probs=74.6

Q ss_pred             cHHHHHHHcCCHhHHHHHH--HCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHH
Q 001365          715 GVLHFAAALGYDWALEPTT--VAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLA  792 (1092)
Q Consensus       715 TpLH~AA~~G~~~iVk~LL--~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlA  792 (1092)
                      -|||+++.....+-+..++  +.+..|+.+|..|.||||+|+.-|+.+.++.|+.+||++..      +|+.|++|||-|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~------kN~~gWs~L~EA   95 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSI------KNNEGWSPLHEA   95 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccc------cccccccHHHHH
Confidence            4599999887666655433  34677899999999999999999999999999999999877      889999999999


Q ss_pred             HHcCcHHHHHHHHHc
Q 001365          793 SSIGHKGIAGYLAES  807 (1092)
Q Consensus       793 a~~G~~eiv~~LLe~  807 (1092)
                      +..|+..++..++.+
T Consensus        96 v~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   96 VSTGNEQIITEVLRH  110 (560)
T ss_pred             HHcCCHHHHHHHHHH
Confidence            999999887777644

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.03  E-value=3.6e-06  Score=105.63  Aligned_cols=100  Identities=29%  Similarity=0.316  Sum_probs=87.7

Q ss_pred             hCCCCCCcc--cCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 001365          701 EGGKGPCVL--DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDP  778 (1092)
Q Consensus       701 e~GadvN~~--D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~  778 (1092)
                      .+|+++|..  -..|.|+||.|+..|..-++++|+.+|+++|.+|..|+||||.+...|+...+..|+++||+.++    
T Consensus       642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a----  717 (785)
T KOG0521|consen  642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNA----  717 (785)
T ss_pred             cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccc----
Confidence            345555542  34689999999999999999999999999999999999999999999999999999999999988    


Q ss_pred             CCCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 001365          779 TPKYPSGRTPADLASSIGHKGIAGYLAE  806 (1092)
Q Consensus       779 n~~D~~G~TPLhlAa~~G~~eiv~~LLe  806 (1092)
                        .|.+|.+||++|....+.+++-+|.-
T Consensus       718 --~~~~~~~~l~~a~~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  718 --FDPDGKLPLDIAMEAANADIVLLLRL  743 (785)
T ss_pred             --cCccCcchhhHHhhhccccHHHHHhh
Confidence              67999999999988777777766653

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.75  E-value=4.8e-05  Score=79.01  Aligned_cols=71  Identities=21%  Similarity=0.099  Sum_probs=66.3

Q ss_pred             CCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCC-CCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCC
Q 001365          703 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAG-VNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPG  773 (1092)
Q Consensus       703 GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~G-adin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin  773 (1092)
                      +.++|++|..|||+|++||..|..++|.+|+.+| +.|..+|..|.+++.+|-..|+.++|..|.+.-.+-.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets   73 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETS   73 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCC
Confidence            4689999999999999999999999999999999 9999999999999999999999999999999855543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.75  E-value=8e-05  Score=83.88  Aligned_cols=84  Identities=25%  Similarity=0.174  Sum_probs=67.2

Q ss_pred             CcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHH
Q 001365          714 QGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLAS  793 (1092)
Q Consensus       714 ~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa  793 (1092)
                      ..-|..||+.|..+.|+.|++.|++||++|....+||.+|+.+||..+|++||++||-...      -.-+|.-++ +++
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~r------dtf~G~RC~-Yga  109 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSR------DTFDGDRCH-YGA  109 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccc------cccCcchhh-hhh
Confidence            4568999999999999999999999999999999999999999999999999999997643      124555554 444


Q ss_pred             HcCcHHHHHHHHH
Q 001365          794 SIGHKGIAGYLAE  806 (1092)
Q Consensus       794 ~~G~~eiv~~LLe  806 (1092)
                      .+  ..|-++|+.
T Consensus       110 Ln--d~IR~mlls  120 (516)
T KOG0511|consen  110 LN--DRIRRMLLS  120 (516)
T ss_pred             hh--HHHHHHHHH
Confidence            33  234444544

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=97.72  E-value=4.7e-05  Score=88.68  Aligned_cols=105  Identities=15%  Similarity=0.203  Sum_probs=86.0

Q ss_pred             HHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcC
Q 001365          717 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIG  796 (1092)
Q Consensus       717 LH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G  796 (1092)
                      |.-|+..+.+--+..+..+|.++-.++.+-.|-||+|+..|+-+||++||++|..- +   +++.|..|.|+||-|+..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~e-l---ld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSE-L---LDMADETGETALHKAACQR  945 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHH-H---HHHHhhhhhHHHHHHHHhc
Confidence            34455555544444555678999999999999999999999999999999998752 2   3447799999999999999


Q ss_pred             cHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          797 HKGIAGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       797 ~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      +..+..+|++.|     +.+.-.|..|.|+.--+
T Consensus       946 ~r~vc~~lvdag-----asl~ktd~kg~tp~era  974 (1004)
T KOG0782|consen  946 NRAVCQLLVDAG-----ASLRKTDSKGKTPQERA  974 (1004)
T ss_pred             chHHHHHHHhcc-----hhheecccCCCChHHHH
Confidence            999999999999     67888999998875444

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.68  E-value=0.00013  Score=89.89  Aligned_cols=100  Identities=19%  Similarity=0.047  Sum_probs=85.2

Q ss_pred             CCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCC----CCCCCC
Q 001365          704 KGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPG----ALSDPT  779 (1092)
Q Consensus       704 advN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin----~~~D~n  779 (1092)
                      .++|++|.-|+++||+|..+.+.+++++|++++..+       .-+|.+|...|..++|++|+.+-....    ..++..
T Consensus        53 lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~  125 (822)
T KOG3609|consen   53 LNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANS  125 (822)
T ss_pred             cchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCc
Confidence            578999999999999999999999999999998776       358999999999999999998744321    122334


Q ss_pred             CCCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Q 001365          780 PKYPSGRTPADLASSIGHKGIAGYLAESDLS  810 (1092)
Q Consensus       780 ~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~  810 (1092)
                      +....+-|||.+||..++.+|+++|+.+|++
T Consensus       126 ~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen  126 PHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             ccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence            4567789999999999999999999999965

>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=97.63  E-value=0.00024  Score=85.28  Aligned_cols=96  Identities=11%  Similarity=0.135  Sum_probs=68.5

Q ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Q 001365          919 PVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETLTAS  998 (1092)
Q Consensus       919 ~l~~AA~~IQ~~~Rg~~~Rk~fl~~r~~av~IQa~~Rg~~aRk~y~~~~~a~~~iqk~irr~r~kr~glrg~~~~~~~~~  998 (1092)
                      .+-..++.||+.||||..|.+|++||.+++.|+ +||.       -++++.+..||..+|.|+++|..=+-++ ...   
T Consensus       694 ~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~-------~K~ks~v~el~~~~rg~k~~r~ygk~~~-WP~---  761 (1001)
T KOG0164|consen  694 RLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRR-------YKLKSYVQELQRRFRGAKQMRDYGKSIR-WPA---  761 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-------HHHHHHHHHHHHHHHhhhhccccCCCCC-CCC---
Confidence            355678999999999999999999999999999 8873       2456777888999999988875443333 110   


Q ss_pred             ccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 001365          999 SSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRL 1048 (1092)
Q Consensus       999 ~~~~~~~~~~~~~~~~~~~rkq~~~~~~~A~~~vQs~~R~~~AR~~yrrl 1048 (1092)
                      |      +     -.           ++++..++|.|+-.+.|.+-.+++
T Consensus       762 p------P-----~~-----------Lr~~~~~L~~lf~rwra~~~~~~i  789 (1001)
T KOG0164|consen  762 P------P-----LV-----------LREFEELLRELFIRWRAWQILKSI  789 (1001)
T ss_pred             C------c-----hH-----------HHHHHHHHHHHHHHHHHHHHHHhC
Confidence            0      0     11           335556677777777776666655

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=97.47  E-value=0.00069  Score=85.10  Aligned_cols=64  Identities=20%  Similarity=0.152  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001365          920 VHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRG  984 (1092)
Q Consensus       920 l~~AA~~IQ~~~Rg~~~Rk~fl~~r~~av~IQa~~Rg~~aRk~y~~~~~a~~~iqk~irr~r~kr  984 (1092)
                      ++++++.||..+||+..|+... ...++|.||+.||++..|++|+.++.++..+|+.+|.+..++
T Consensus       695 ~r~~~~~~Q~~~rG~~~r~~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~  758 (862)
T KOG0160|consen  695 LRSAVIIIQAYSRGVLARRETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN  758 (862)
T ss_pred             HHHHHHHHhhhhhHHHHHHhhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4568888899999999888555 666788899999999999999888888888888888877766

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=97.40  E-value=0.00019  Score=49.05  Aligned_cols=21  Identities=57%  Similarity=0.771  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 001365          944 RKQIIKIQAYVRGHQVRKNYK  964 (1092)
Q Consensus       944 r~~av~IQa~~Rg~~aRk~y~  964 (1092)
                      ++++|.||++||||++|++|+
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~k   21 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRYK   21 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcC
Confidence            357788888888888888774

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.28  E-value=0.00037  Score=78.67  Aligned_cols=58  Identities=26%  Similarity=0.249  Sum_probs=53.8

Q ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Q 001365          747 WTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLS  810 (1092)
Q Consensus       747 ~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~  810 (1092)
                      .--|..||+.|..+.|+.|++.|.++|+      .|....+||.+|+..||.++|++|+++|+.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~------vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNA------VDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcch------hhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            4468999999999999999999999988      678999999999999999999999999964

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.12  E-value=0.00036  Score=88.07  Aligned_cols=73  Identities=25%  Similarity=0.146  Sum_probs=67.4

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHH
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIA  767 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe  767 (1092)
                      ++++|++.|+++|.+|..|+||||.+...|+...+..|+++|++.++.|..|.+||++|....+.+++-+|.-
T Consensus       671 ~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  671 AVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANADIVLLLRL  743 (785)
T ss_pred             HHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccccHHHHHhh
Confidence            7788999999999999999999999999999999999999999999999999999999988777777766543

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=97.09  E-value=0.0053  Score=79.77  Aligned_cols=132  Identities=24%  Similarity=0.201  Sum_probs=76.9

Q ss_pred             chhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHH
Q 001365          917 DEPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQA-------------------------YVRGHQVRKNYKKIIWSVG  971 (1092)
Q Consensus       917 ~~~l~~AA~~IQ~~~Rg~~~Rk~fl~~r~~av~IQa-------------------------~~Rg~~aRk~y~~~~~a~~  971 (1092)
                      ...++..+++||+.|||+..||+|+...+.+..||.                         .||....|++|+.....+.
T Consensus       741 d~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~  820 (1463)
T COG5022         741 DAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACII  820 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHH
Confidence            345888999999999999999999988776555555                         4455555554444444444


Q ss_pred             HHHHHHHHHHHhcccc-cccccccccccccccccCCccchHHHHHHHHHH-HHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 001365          972 IMEKIILRWRRRGSGL-RGFKSETLTASSSMVATSAKEDDYDFLKEGRKQ-KEERLQKALARVKSMVQYPEARDQYRRLL 1049 (1092)
Q Consensus       972 ~iqk~irr~r~kr~gl-rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~rkq-~~~~~~~A~~~vQs~~R~~~AR~~yrrl~ 1049 (1092)
                      .+|+-+.+.+-.+... +-+.-.            ...-.+.|-+..-.+ +...+++-++.+|+.+|-..|++++..++
T Consensus       821 ~lq~~i~~~~~~~~~~e~~~~~~------------~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~k  888 (1463)
T COG5022         821 KLQKTIKREKKLRETEEVEFSLK------------AEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELK  888 (1463)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHH------------HHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443333222211100 000000            011223333322222 24456677788888888888888888888


Q ss_pred             HHHHHHHHHHH
Q 001365         1050 NVVNEIQETKA 1060 (1092)
Q Consensus      1050 ~~~~~~~~~~~ 1060 (1092)
                      ..++++..-+-
T Consensus       889 ~~~~~~~~l~~  899 (1463)
T COG5022         889 IDVKSISSLKL  899 (1463)
T ss_pred             HhHHHHHHHHH
Confidence            77776655443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.66  E-value=0.0052  Score=76.29  Aligned_cols=32  Identities=19%  Similarity=0.040  Sum_probs=27.7

Q ss_pred             CCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          743 DVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       743 D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      -..+-|||.+||..++.||+++||.+|+.+-.
T Consensus       128 ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  128 FTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             CCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            34678999999999999999999999998855

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=96.57  E-value=0.0027  Score=43.45  Aligned_cols=21  Identities=33%  Similarity=0.466  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHhhhHHHHHHHH
Q 001365          921 HAAATRIQNKFRSWKGRKDFL  941 (1092)
Q Consensus       921 ~~AA~~IQ~~~Rg~~~Rk~fl  941 (1092)
                      ++||+.||+.||||+.|++|+
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~k   21 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRYK   21 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcC
Confidence            469999999999999999985

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>PTZ00014 myosin-A; Provisional

Probab=96.57  E-value=0.0031  Score=80.43  Aligned_cols=39  Identities=21%  Similarity=0.221  Sum_probs=21.9

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001365          923 AATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRK  961 (1092)
Q Consensus       923 AA~~IQ~~~Rg~~~Rk~fl~~r~~av~IQa~~Rg~~aRk  961 (1092)
                      ++..||+.||||+.|++|++++++++.||++||||++|+
T Consensus       779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~  817 (821)
T PTZ00014        779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIA  817 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445555555555555555555555555555555555554

>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=96.35  E-value=0.0069  Score=73.32  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001365          942 IIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIME  974 (1092)
Q Consensus       942 ~~r~~av~IQa~~Rg~~aRk~y~~~~~a~~~iq  974 (1092)
                      .+..-+..||+.|||+++|.+|+.++.++.+|+
T Consensus       694 ~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~  726 (1001)
T KOG0164|consen  694 RLPSLVTLLQKAWRGWLARQRYRRMKASATIIR  726 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567889999999999999999987766655

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=96.26  E-value=0.0039  Score=44.90  Aligned_cols=22  Identities=45%  Similarity=0.566  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 001365          943 IRKQIIKIQAYVRGHQVRKNYK  964 (1092)
Q Consensus       943 ~r~~av~IQa~~Rg~~aRk~y~  964 (1092)
                      +.++++.||++||||++|++|+
T Consensus         2 ~~~aa~~IQa~~Rg~~~r~~y~   23 (26)
T smart00015        2 LTRAAIIIQAAWRGYLARKRYK   23 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            4567888999999999998884

Calmodulin-binding motif.

>smart00248 ANK ankyrin repeats

Probab=96.23  E-value=0.007  Score=41.58  Aligned_cols=27  Identities=41%  Similarity=0.412  Sum_probs=18.8

Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCC
Q 001365          746 GWTALHWAAYCGRERTVASLIALGAAP  772 (1092)
Q Consensus       746 G~TpLH~Aa~~G~~eiV~~LLe~GAdi  772 (1092)
                      |.||||+|+..|+.+++++|+..|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            567777777777777777777766654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.15  E-value=0.0072  Score=70.86  Aligned_cols=71  Identities=28%  Similarity=0.351  Sum_probs=59.2

Q ss_pred             HhHHHHHHHCCCCcccc------CCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHH
Q 001365          726 DWALEPTTVAGVNINFR------DVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKG  799 (1092)
Q Consensus       726 ~~iVk~LL~~Gadin~~------D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~e  799 (1092)
                      ...|++|.+++++.|..      +..--|+||+|+..|..++|.+||+.|+|+.+      +|..|+||..++.   +.+
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~------kd~~Grtpy~ls~---nkd  474 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPST------KDGAGRTPYSLSA---NKD  474 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchh------cccCCCCcccccc---cHH
Confidence            66789999999888753      45567999999999999999999999998776      8899999999987   555


Q ss_pred             HHHHHH
Q 001365          800 IAGYLA  805 (1092)
Q Consensus       800 iv~~LL  805 (1092)
                      |-..++
T Consensus       475 Vk~~F~  480 (591)
T KOG2505|consen  475 VKSIFI  480 (591)
T ss_pred             HHHHHH
Confidence            555554

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.54  E-value=0.024  Score=66.68  Aligned_cols=68  Identities=24%  Similarity=0.153  Sum_probs=55.8

Q ss_pred             HHhhhHHHHHHHHHhCCCCCCc------ccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHH
Q 001365          687 LKEKLQVWLVQKAAEGGKGPCV------LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA  754 (1092)
Q Consensus       687 ~k~~l~~~LvklLle~GadvN~------~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa  754 (1092)
                      ++.+-....++.|.+++++.|.      .+..--|+||+|+..|...+|.+||+.|+|+..+|..|+||..+++
T Consensus       398 lkk~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  398 LKKKPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             HhccCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            3333334467788888877764      3445679999999999999999999999999999999999999876

>PTZ00014 myosin-A; Provisional

Probab=95.53  E-value=0.028  Score=71.99  Aligned_cols=43  Identities=12%  Similarity=0.061  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001365          943 IRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGS  985 (1092)
Q Consensus       943 ~r~~av~IQa~~Rg~~aRk~y~~~~~a~~~iqk~irr~r~kr~  985 (1092)
                      +...++.||++||||++||+|++++.++.+||+.+|+|..++.
T Consensus       776 ~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~  818 (821)
T PTZ00014        776 WEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE  818 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3456889999999999999999999999999999999987753

>smart00248 ANK ankyrin repeats

Probab=95.39  E-value=0.022  Score=38.94  Aligned_cols=29  Identities=31%  Similarity=0.281  Sum_probs=26.6

Q ss_pred             CCCcHHHHHHHcCCHhHHHHHHHCCCCcc
Q 001365          712 CGQGVLHFAAALGYDWALEPTTVAGVNIN  740 (1092)
Q Consensus       712 ~G~TpLH~AA~~G~~~iVk~LL~~Gadin  740 (1092)
                      .|.||||+|+..|+.++++.|+..|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            47899999999999999999999998775

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=94.73  E-value=0.031  Score=40.23  Aligned_cols=22  Identities=32%  Similarity=0.463  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHH
Q 001365          920 VHAAATRIQNKFRSWKGRKDFL  941 (1092)
Q Consensus       920 l~~AA~~IQ~~~Rg~~~Rk~fl  941 (1092)
                      +..+|+.||+.||||+.|++|.
T Consensus         2 ~~~aa~~IQa~~Rg~~~r~~y~   23 (26)
T smart00015        2 LTRAAIIIQAAWRGYLARKRYK   23 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            4578999999999999999984

Calmodulin-binding motif.

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]

Probab=94.22  E-value=0.18  Score=66.00  Aligned_cols=95  Identities=23%  Similarity=0.224  Sum_probs=70.9

Q ss_pred             HHHHHHhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHhcccccccccc
Q 001365          925 TRIQNKFRSWKGRKDFLIIRK-------QIIKIQAYVRGHQV---RKNY-KKIIWSVGIMEKIILRWRRRGSGLRGFKSE  993 (1092)
Q Consensus       925 ~~IQ~~~Rg~~~Rk~fl~~r~-------~av~IQa~~Rg~~a---Rk~y-~~~~~a~~~iqk~irr~r~kr~glrg~~~~  993 (1092)
                      .+||+..||+..|.+|...-.       .++.||+.|||++.   |..| ......+..+|+..|++..+.++.|     
T Consensus       539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~-----  613 (1401)
T KOG2128|consen  539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSR-----  613 (1401)
T ss_pred             hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHH-----
Confidence            455999999999888766543       47889999999984   2222 3444678899999988877766664     


Q ss_pred             cccccccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 001365          994 TLTASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYRRL 1048 (1092)
Q Consensus       994 ~~~~~~~~~~~~~~~~~~~~~~~~rkq~~~~~~~A~~~vQs~~R~~~AR~~yrrl 1048 (1092)
                                              +.|-...-..+++.||+..|...+|..|+-|
T Consensus       614 ------------------------~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L  644 (1401)
T KOG2128|consen  614 ------------------------KLQYFKDNMTKIIKIQSKIRKFPNRKDYKLL  644 (1401)
T ss_pred             ------------------------HHHHHHHhhhhHHHHHHHHHhcccchHHHHH
Confidence                                    2222223356789999999999999999999

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=93.20  E-value=0.33  Score=64.02  Aligned_cols=108  Identities=16%  Similarity=0.076  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc---------------ccccccccc
Q 001365          935 KGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGF---------------KSETLTASS  999 (1092)
Q Consensus       935 ~~Rk~fl~~r~~av~IQa~~Rg~~aRk~y~~~~~a~~~iqk~irr~r~kr~glrg~---------------~~~~~~~~~  999 (1092)
                      +...+-..+...++.||+.|||+..||+|...+.....++..++.|+.++.-=++.               ..+.+.+. 
T Consensus       736 LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~-  814 (1463)
T COG5022         736 LEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRS-  814 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHH-
Confidence            44445566778899999999999999999888776666666666554443111111               11110000 


Q ss_pred             cccccCCccchHHHHHH-----HHHHH--HHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 001365         1000 SMVATSAKEDDYDFLKE-----GRKQK--EERLQKALARVKSMVQYPEARDQYRRLL 1049 (1092)
Q Consensus      1000 ~~~~~~~~~~~~~~~~~-----~rkq~--~~~~~~A~~~vQs~~R~~~AR~~yrrl~ 1049 (1092)
                            -...+...-+.     ..+++  .+...+|.+-+|.+||.-.++++|..|+
T Consensus       815 ------~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~  865 (1463)
T COG5022         815 ------YLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLK  865 (1463)
T ss_pred             ------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhh
Confidence                  00001111100     11221  3355679999999999999999999996

>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors

Probab=92.82  E-value=0.016  Score=52.93  Aligned_cols=62  Identities=24%  Similarity=0.395  Sum_probs=51.5

Q ss_pred             EEEeeccccccCCCCeeEEEEec-CcCCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCC-CCCCchHHH
Q 001365          509 SIIDFSPNWAYVSSEVKVLITGR-FLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSS-QKVGRVPFY  578 (1092)
Q Consensus       509 sI~dfSP~wa~s~~~tKVlI~G~-fl~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~-d~~G~TPLH  578 (1092)
                      .|+.++|.+++..|+++|.|+|. |...        +.|+||...+-.+++...+.+|.+|+ +..|-+..-
T Consensus         2 ~I~ai~P~eG~~tGGt~VtI~GenF~~g--------l~V~FG~~~~w~e~isp~~i~~~tPP~~~pG~V~Vt   65 (85)
T cd01175           2 CIKAISPSEGWTTGGATVIIIGDNFFDG--------LQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVT   65 (85)
T ss_pred             cccEecCCCCcccCCeEEEEECCCCCCC--------cEEEECCEeEEEEEeccceEEEecCCCCCCceEEEE
Confidence            58999999999999999999994 5444        67999999888888888888888888 777765443

COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=84.12  E-value=2.9  Score=45.60  Aligned_cols=93  Identities=13%  Similarity=0.076  Sum_probs=60.8

Q ss_pred             CcHHHHHHHcCCHhHHHHHHHCCCCccccCC----CCccHHHHHH--HcCCHHHHHHHHHcC-CCCCCCCCCCCCCCCCC
Q 001365          714 QGVLHFAAALGYDWALEPTTVAGVNINFRDV----NGWTALHWAA--YCGRERTVASLIALG-AAPGALSDPTPKYPSGR  786 (1092)
Q Consensus       714 ~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~----~G~TpLH~Aa--~~G~~eiV~~LLe~G-Adin~~~D~n~~D~~G~  786 (1092)
                      .++|-+|...+..+++-+|+.+ -+....|.    .+.--+-++-  ..-...|+++.|++| +++|.   +=.+-+.|.
T Consensus       180 ~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~---~F~~~NSGd  255 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNK---KFQKVNSGD  255 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccch---hhhccCCcc
Confidence            4677777777777777777764 11111111    1222233332  233567888888888 46665   233557899


Q ss_pred             CHHHHHHHcCcHHHHHHHHHcCCC
Q 001365          787 TPADLASSIGHKGIAGYLAESDLS  810 (1092)
Q Consensus       787 TPLhlAa~~G~~eiv~~LLe~Ga~  810 (1092)
                      |-|+-|...++.+++.+||++|+.
T Consensus       256 tMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  256 TMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hHHHhHHhcCcHHHHHHHHHcCcc
Confidence            999999999999999999999964

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=80.23  E-value=3.3  Score=51.40  Aligned_cols=45  Identities=24%  Similarity=0.431  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001365          919 PVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKI  966 (1092)
Q Consensus       919 ~l~~AA~~IQ~~~Rg~~~Rk~fl~~r~~av~IQa~~Rg~~aRk~y~~~  966 (1092)
                      .....|.+||+.||.|..||+|.++|..+.++=   -|...||+|--.
T Consensus       694 ~~d~~A~~IQkAWRrfv~rrky~k~ree~t~ll---~gKKeRRr~Si~  738 (1106)
T KOG0162|consen  694 KWDGMARRIQKAWRRFVARRKYEKMREEATKLL---LGKKERRRYSIN  738 (1106)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHH
Confidence            345679999999999999999999999888763   577788887544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1092
2cxk_A	95	Crystal Structure Of The Tig Domain Of Human Calmod		1e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-07
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-06
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		7e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-05
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-05
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-05
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		5e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		7e-05
2dfs_A	1080	3-D Structure Of Myosin-V Inhibited State Length =		9e-05
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-04
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-04
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-04
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		9e-04

>pdb|2CXK|A Chain A, Crystal Structure Of The Tig Domain Of Human Calmodulin- Binding Transcription Activator 1 (Camta1) Length = 95

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 6/88 (6%)
Query: 510 IIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSS 569
           + D+SP W+Y    VKVLITG +    QEA N  +SC+F +I VPA ++  GVLRC+  +
Sbjct: 9   VTDYSPEWSYPEGGVKVLITGPW----QEASN-NYSCLFDQISVPASLIQPGVLRCYCPA 63
Query: 570 QKVGRVPFYVTCSNRLSCSEVREFEYRA 597
              G V   V  +N++  + V  FEY++
Sbjct: 64  HDTGLVTLQVAFNNQIISNSVV-FEYKS 90

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 701 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 760
           E G  P   D  G+  LH+AA  G+   ++     G + N +D +G T LH+AA  G + 
Sbjct: 25  ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKE 84
Query: 761 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI 800
            V  L++ GA      DP  K   GRTP   A+  GHK I
Sbjct: 85  IVKLLLSKGA------DPNAKDSDGRTPLHYAAENGHKEI 118

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 769
           D  G+  LH AA  G+   ++     G + N +D +G T LH AA  G +  V  L++ G
Sbjct: 34  DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 93
Query: 770 AAPGALSDPTPKYPSGRTPADLASSIGHKGI 800
           A      DP  K   G+TP  LA+  GHK +
Sbjct: 94  A------DPNAKDSDGKTPLHLAAENGHKEV 118

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 709 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL 768
           +D  G   LH AA+LG+   +E     G ++N +D  G T L+ AAY G    V  L+  
Sbjct: 64  VDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 769 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIA 801
           GA      D   +   G+T  D++  IG++ +A
Sbjct: 124 GA------DVNAQDKFGKTAFDISIDIGNEDLA 150

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 701 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 760
           E G      D  G+  LH+AA  G+   ++     G ++N +D +G T LH+AA  G + 
Sbjct: 25  ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKE 84
Query: 761 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI 800
            V  LI+ GA      D   K   GRTP   A+  GHK I
Sbjct: 85  IVKLLISKGA------DVNAKDSDGRTPLHYAAKEGHKEI 118

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 769
           D  G   LH AA +G+   +E     G ++N RD +GWT LH AA  G    V  L+  G
Sbjct: 44  DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYG 103
Query: 770 AAPGALSDPTPKYPSGRTPADLASSIGH 797
           A      D   +   G TP  LA+  GH
Sbjct: 104 A------DVNAQDAYGLTPLHLAADRGH 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 701 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 760
           E G      D  G+  LH AA  G+   ++    AG ++N +D NG T LH AA  G   
Sbjct: 23  EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 761 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGH 797
            V  L+  GA      D   K  +GRTP  LA+  GH
Sbjct: 83  VVKLLLEAGA------DVNAKDKNGRTPLHLAARNGH 113

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 769
           D  G   LH AA  G+   +E    AG ++N +D +G+T LH AA  G    V  L+  G
Sbjct: 65  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 770 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 801
           A      D   +   G+TP DLA   GH+ IA
Sbjct: 125 A------DVNAQDKFGKTPFDLAIREGHEDIA 150

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 713 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP 772
           G+  LH AA  G+   ++    AG ++N +D NG T LH AA  G    V  L+  GA  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-- 59
Query: 773 GALSDPTPKYPSGRTPADLASSIGH 797
               D   K  +GRTP  LA+  GH
Sbjct: 60  ----DVNAKDKNGRTPLHLAARNGH 80

>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 918 EPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVR 960
           + + AA  RIQ   R W  RK ++ +R+  I IQ YVRGHQ R
Sbjct: 765 DKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQAR 807

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 713 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP 772
           G   LH AAA GY   L+    A  ++N +D +GWT LH AA+ G+E     L+      
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE----- 253
Query: 773 GALSDPTPKYPSGRTPADLASSIGHKGIAGY 803
             L D       G+T  D+A     + I GY
Sbjct: 254 -NLCDMEAVNKVGQTAFDVAD----EDILGY 279

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 769
           D  G   LH AA  G+   +E    AG ++N +D +G+T LH AA  G    V  L+  G
Sbjct: 65  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 770 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 801
           A      D   +   G+TP DLA   G++ IA
Sbjct: 125 A------DVNAQDKFGKTPFDLAIDNGNEDIA 150

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 701 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 760
           E G      D  G+  LH AA  G+   ++     G ++N +D +G T LH AA  G + 
Sbjct: 25  ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84
Query: 761 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI 800
            V  LI+ GA      D   K   GRTP   A+  GHK +
Sbjct: 85  VVKLLISKGA------DVNAKDSDGRTPLHHAAENGHKEV 118

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 769
           D  G   LH AA  G+   +E    AG ++N +D +G+T LH AA  G    V  L+  G
Sbjct: 44  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 103
Query: 770 AAPGALSDPTPKYPSGRTPADLASSIGH 797
           A      D   K   G TP  LA+  GH
Sbjct: 104 A------DVNAKDKDGYTPLHLAAREGH 125

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 701 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 760
           E G  P +L    +  L  A+  GY   +       V+IN  D NG T L +A +    +
Sbjct: 57  EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVK 116
Query: 761 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI 800
            V +L+A GA      D T +  SG TP DLA ++G++ +
Sbjct: 117 CVEALLARGA------DLTTEADSGYTPMDLAVALGYRKV 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1092
2cxk_A	95	Camta1, calmodulin binding transcription activator	6e-35
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	1e-16
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	9e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-11
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-12
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-05
2rfa_A	232	Transient receptor potential cation channel subfa	2e-11
2rfa_A	232	Transient receptor potential cation channel subfa	1e-09
2rfa_A	232	Transient receptor potential cation channel subfa	7e-09
2rfa_A	232	Transient receptor potential cation channel subfa	2e-08
2rfa_A	232	Transient receptor potential cation channel subfa	2e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-11
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-10
2etb_A	256	Transient receptor potential cation channel subfam	1e-09
2etb_A	256	Transient receptor potential cation channel subfam	1e-06
2etb_A	256	Transient receptor potential cation channel subfam	2e-06
2etb_A	256	Transient receptor potential cation channel subfam	6e-06
2etb_A	256	Transient receptor potential cation channel subfam	5e-05
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-04
2pnn_A	273	Transient receptor potential cation channel subfa	7e-09
2pnn_A	273	Transient receptor potential cation channel subfa	9e-08
2pnn_A	273	Transient receptor potential cation channel subfa	2e-07
2pnn_A	273	Transient receptor potential cation channel subfa	6e-07
2pnn_A	273	Transient receptor potential cation channel subfa	1e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-08
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	5e-08
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-06
3muj_A	138	Transcription factor COE3; immunoglobulin like fol	7e-06

>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1 Length = 95

 Score =  127 bits (320), Expect = 6e-35
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 503 SQDQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGV 562
           S      + D+SP W+Y    VKVLITG +  +     +  +SC+F +I VPA ++  GV
Sbjct: 2   SSGSSGMVTDYSPEWSYPEGGVKVLITGPWQEA-----SNNYSCLFDQISVPASLIQPGV 56

Query: 563 LRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRAS 598
           LRC+  +   G V   V  +N++  + V  FEY++ 
Sbjct: 57  LRCYCPAHDTGLVTLQVAFNNQIISNSV-VFEYKSG 91

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58

 Score = 73.7 bits (182), Expect = 1e-16
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 918 EPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKI 966
           + + AA  RIQ   R W  RK +L +++  I +Q YVRG+Q R   K +
Sbjct: 2   DKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFL 50

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58

 Score = 37.5 bits (88), Expect = 9e-04
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 943 IRKQIIKIQAYVRGHQVRKNYKKIIWSV 970
           +R   I+IQ  +RG  +RK Y  +  + 
Sbjct: 4   LRAACIRIQKTIRGWLLRKRYLCMQRAA 31

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 72.9 bits (180), Expect = 9e-15
 Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 17/103 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVN-GWTALHWAAYCGRERTVA 763
           D  G+  L F A LG     +   V     AG +++ RD+  G TALH AA   R   V 
Sbjct: 73  DENGRTALLFVAGLGS---DK--CVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127

Query: 764 SLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE 806
           +L+ LGA      D   +   G T  +LA  I      G   +
Sbjct: 128 ALVELGA------DIEVEDERGLTALELAREILKTTPKGNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 65.2 bits (160), Expect = 4e-12
 Identities = 21/120 (17%), Positives = 35/120 (29%), Gaps = 25/120 (20%)

Query: 699 AAEGGKGPCVLDHCGQGV---------LHFAAALGYDWALEPTTV----AGVNINFRDVN 745
             + G  P  +                   AA        +   +       +++  D N
Sbjct: 21  EWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKAD---EQ--ALSQLLEDRDVDAVDEN 75

Query: 746 GWTALHWAAYCGRERTVASLIALGAAPGALSDPTPK-YPSGRTPADLASSIGHKGIAGYL 804
           G TAL + A  G ++ V  L   GA      D   +    G T   +A+      +   L
Sbjct: 76  GRTALLFVAGLGSDKCVRLLAEAGA------DLDHRDMRGGLTALHMAAGYVRPEVVEAL 129

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 55.2 bits (134), Expect = 9e-09
 Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 10/59 (16%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGA 770
           LH AA        E   V      G +I   D  G TAL  A    +     + +  G 
Sbjct: 114 LHMAAGYVR---PE--VVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 14/100 (14%), Positives = 24/100 (24%), Gaps = 22/100 (22%)

Query: 734 VAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLAS 793
           V  +  +     G          G   +      + A      D   +     TP   A+
Sbjct: 2   VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA------DVVSE---YETPWWTAA 52

Query: 794 SIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGATA 833
               +     L        L    ++  D +     G TA
Sbjct: 53  RKADEQALSQL--------LEDRDVDAVDEN-----GRTA 79

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 73.3 bits (181), Expect = 2e-14
 Identities = 31/129 (24%), Positives = 40/129 (31%), Gaps = 20/129 (15%)

Query: 710 DHCGQGVLHFAAALGYDWA----LEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASL 765
           D  G   LH A   G   A    +      G  ++  +    T LH A        V  L
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 766 IALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSS-ALSAISLNKKDGD 824
           +  GA       P      G+T A LA           L    L S A   + L  ++ D
Sbjct: 66  VTAGA------SPMALDRHGQTAAHLACEHRSPTCLRAL----LDSAAPGTLDLEARNYD 115

Query: 825 VAEVTGATA 833
                G TA
Sbjct: 116 -----GLTA 119

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 65.9 bits (162), Expect = 5e-12
 Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 16/93 (17%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           L  A        L    V      G N+N +  +G +ALH A+  G    V +L+  GA 
Sbjct: 154 LIHAVENNS---LS--MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA- 207

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                D + K     TP  +A S     I    
Sbjct: 208 -----DSSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 62.5 bits (153), Expect = 8e-11
 Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 21/105 (20%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV---------AGVNINFRDVNGWTALHWAAYCGRER 760
           D  GQ   H A             +           +++  R+ +G TALH A     + 
Sbjct: 76  DRHGQTAAHLACEHRS---PT--CLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE 130

Query: 761 TVASLIALGAAPGALSDPTPK-YPSGRTPADLASSIGHKGIAGYL 804
           TV  L+  GA      D       SGR+P   A       +   L
Sbjct: 131 TVQLLLERGA------DIDAVDIKSGRSPLIHAVENNSLSMVQLL 169

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 53.6 bits (130), Expect = 7e-08
 Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 739 INFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHK 798
               D +G T LH A   G    V  L+ L    G   +        +TP  LA      
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR--ELDIYNNLRQTPLHLAVITTLP 59

Query: 799 GIAGYL 804
            +   L
Sbjct: 60  SVVRLL 65

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 52.1 bits (126), Expect = 2e-07
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 10/66 (15%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
            + G   LH A+  G    L    V     +G + + ++ +  T L  A        +  
Sbjct: 180 MYSGSSALHSASGRGL---LP--LVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRG 234

Query: 765 LIALGA 770
                A
Sbjct: 235 KATRPA 240

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 67.8 bits (167), Expect = 1e-13
 Identities = 23/100 (23%), Positives = 30/100 (30%), Gaps = 16/100 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           DH G   LH A   G+   L+   V         +N       + LH AA  G    V  
Sbjct: 40  DHAGWTPLHEACNHGH---LK--VVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKL 94

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L++ GA              G  P D       K +    
Sbjct: 95  LLSYGA------SRNAVNIFGLRPVDYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 63.2 bits (155), Expect = 6e-12
 Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 16/100 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           +H G+ +LH A+  G    +   +V      G + N +D  GWT LH A   G  + V  
Sbjct: 7   NHRGETLLHIASIKGD---IP--SVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L+   A                +P   A+  GH  I   L
Sbjct: 62  LLQHKA------LVNTTGYQNDSPLHDAAKNGHVDIVKLL 95

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 59.0 bits (144), Expect = 2e-10
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 736 GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSI 795
           G++    +  G T LH A+  G   +V  L+  G+      DP  K  +G TP   A + 
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGS------DPNVKDHAGWTPLHEACNH 53

Query: 796 GHKGIAGYL 804
           GH  +   L
Sbjct: 54  GHLKVVELL 62

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 46.3 bits (111), Expect = 5e-06
 Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 13/71 (18%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVA------GVNINFRDVNGWTALHWAAYCGRERTVA 763
            +     LH AA  G+   ++   +       G + N  ++ G   + +      +  + 
Sbjct: 73  GYQNDSPLHDAAKNGH---VD---IVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL 126

Query: 764 SLIALGAAPGA 774
                  +  A
Sbjct: 127 LPEK-NESSSA 136

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 68.6 bits (169), Expect = 2e-13
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 16/102 (15%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           +      LH AA+ G+    +   V        +IN  + +G   LH+A + G+++    
Sbjct: 69  NRGDDTPLHLAASHGH---RD--IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAED 123

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE 806
           L+A GA        +     G  P D A +   + +     +
Sbjct: 124 LVANGA------LVSICNKYGEMPVDKAKAPLRELLRERAEK 159

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 62.1 bits (152), Expect = 4e-11
 Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 17/94 (18%)

Query: 717 LHFAAALGYDWALEPTTV------AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGA 770
           +      G         V         ++N  D +G++ LHWA   GR   V  LI  GA
Sbjct: 9   IFTQCREGN---AV--AVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 771 APGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                           TP  LA+S GH+ I   L
Sbjct: 64  ------RINVMNRGDDTPLHLAASHGHRDIVQKL 91

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 61.7 bits (151), Expect = 5e-11
 Identities = 26/100 (26%), Positives = 30/100 (30%), Gaps = 16/100 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D  G   LH+A   G         V      G  IN  +    T LH AA  G    V  
Sbjct: 36  DDHGFSPLHWACREGR---SA--VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L+   A      D       G  P   A   G   +A  L
Sbjct: 91  LLQYKA------DINAVNEHGNVPLHYACFWGQDQVAEDL 124

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 52.8 bits (128), Expect = 6e-08
 Identities = 15/88 (17%), Positives = 22/88 (25%), Gaps = 12/88 (13%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 769
           +  G   LH+A   G D   E     G  ++  +  G   +  A    RE        +G
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161

Query: 770 AAPGALSDPTPKYPSGRTPADLASSIGH 797
                             P       G 
Sbjct: 162 QNLNR------------IPYKDTFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 50.1 bits (121), Expect = 4e-07
 Identities = 8/62 (12%), Positives = 12/62 (19%), Gaps = 5/62 (8%)

Query: 743 DVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAG 802
                  +      G    V   +          D       G +P   A   G   +  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTEN-----DLNQGDDHGFSPLHWACREGRSAVVE 56

Query: 803 YL 804
            L
Sbjct: 57  ML 58

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 68.2 bits (168), Expect = 2e-13
 Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 16/93 (17%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           +H  AA G    +    +         IN  D  G+T L WAA  G+   V  L+  GA 
Sbjct: 7   VHQLAAQGE---ML--YLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA- 60

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                DP        +   LA S G+  I   L
Sbjct: 61  -----DPQLLGKGRESALSLACSKGYTDIVKML 88

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 67.4 bits (166), Expect = 4e-13
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 16/93 (17%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           L  A + GY    +   V      GV++N  D NG T L +A +    + V  L+  GA 
Sbjct: 73  LSLACSKGY---TD--IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA- 126

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                DPT +  SG    DLA ++G++ +   +
Sbjct: 127 -----DPTIETDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 62.0 bits (152), Expect = 3e-11
 Identities = 21/93 (22%), Positives = 27/93 (29%), Gaps = 16/93 (17%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           L +AAA G    +    V      G +         +AL  A   G    V  L+  G  
Sbjct: 40  LMWAAAHGQ---IA--VVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV- 93

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                D      +G TP   A    H      L
Sbjct: 94  -----DVNEYDWNGGTPLLYAVHGNHVKCVKML 121

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 53.9 bits (131), Expect = 2e-08
 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 6/60 (10%)

Query: 745 NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
               ++H  A  G    +A+ I                  G TP   A++ G   +  +L
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQEN------VINHTDEEGFTPLMWAAAHGQIAVVEFL 55

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 50.5 bits (122), Expect = 3e-07
 Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 10/66 (15%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D  G   L +A    +   ++   V     +G +      +G+ ++  A   G       
Sbjct: 99  DWNGGTPLLYAVHGNH---VK--CVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQV 153

Query: 765 LIALGA 770
           + +   
Sbjct: 154 IESHLL 159

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 71.9 bits (177), Expect = 2e-13
 Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 23/132 (17%)

Query: 710 DHCGQGVLHFAAALGY--------DWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERT 761
               + VLH+ A+               +    AG ++N  D +  T L  A    R R 
Sbjct: 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 181

Query: 762 VASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKK 821
           VA L+  GA      DPT    S R+    A++    G+  Y+    L+S      + + 
Sbjct: 182 VAYLMKAGA------DPTIYNKSERSALHQAAANRDFGMMVYM----LNSTKLKGDIEEL 231

Query: 822 DGDVAEVTGATA 833
           D +     G TA
Sbjct: 232 DRN-----GMTA 238

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 68.8 bits (169), Expect = 3e-12
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 17/101 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV------AGVNINFRDVNGWTALHWAAYCGRERTVA 763
            + G+  LH+AA +     +    V       G N + +D +G T +  AA  GR   V 
Sbjct: 276 KYKGRTALHYAAQVSN---MP--IVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 330

Query: 764 SLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
            LI  GA             +  T   LA +  H  I    
Sbjct: 331 YLIQQGA------SVEAVDATDHTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 17/126 (13%), Positives = 28/126 (22%), Gaps = 14/126 (11%)

Query: 709 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL 768
           L H            G D+  +            +      LH  A  G       +   
Sbjct: 57  LQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRE 115

Query: 769 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSA-ISLNKKDGDVAE 827
                   +        RT     +S      +  L   +    ++A   +N  D D   
Sbjct: 116 SV------NIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD--- 165

Query: 828 VTGATA 833
               T 
Sbjct: 166 --ENTP 169

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 14/106 (13%)

Query: 710 DHCGQGVLHFAAALGYDWALE------PTTVAGVNINFRDVNGWTALHWAAYCGRERTVA 763
           +   +  LH AAA               +T    +I   D NG TAL   A+      VA
Sbjct: 196 NKSERSALHQAAANRD---FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA 252

Query: 764 S---LIALGA--APGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           S   L+  GA       +    +   GRT    A+ + +  I  YL
Sbjct: 253 SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL 298

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 18/107 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV---AGVNINFR--------DVNGWTALHWAAYCGR 758
           D  G   L   A       +    +    G  +++            G TALH+AA    
Sbjct: 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291

Query: 759 ERTVASLIA-LGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
              V  L+   G+      +   +   G+TP  LA+  G   +  YL
Sbjct: 292 MPIVKYLVGEKGS------NKDKQDEDGKTPIMLAAQEGRIEVVMYL 332

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 53.0 bits (128), Expect = 3e-07
 Identities = 15/115 (13%), Positives = 24/115 (20%), Gaps = 19/115 (16%)

Query: 692 QVW--LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTA 749
            VW   ++   +  K    +    Q  L  A+  GY              N         
Sbjct: 15  SVWMPPMENEEKNRKNHQSITS-SQHSLLEASYDGY---------IKRQRNELQHYSLYP 64

Query: 750 LHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                  G +                  PT   P         ++ G   I   +
Sbjct: 65  NPQGYGNGNDFLGDFNHTNLQ------IPTEPEPESPIKLHTEAA-GSYAITEPI 112

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.8 bits (117), Expect = 7e-06
 Identities = 11/59 (18%), Positives = 15/59 (25%), Gaps = 10/59 (16%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGA 770
           +  AA  G    +E   V      G ++   D    TA   A        V        
Sbjct: 317 IMLAAQEGR---IE--VVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 68.2 bits (168), Expect = 2e-13
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 16/93 (17%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           L  A+  GY    +   V       V+IN  D NG T L +A      + V +L+A GA 
Sbjct: 73  LSLASTGGY---TD--IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA- 126

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                D T +  SG TP DLA ++G++ +   +
Sbjct: 127 -----DLTTEADSGYTPMDLAVALGYRKVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 63.2 bits (155), Expect = 2e-11
 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 17/94 (18%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVN-INFRDVNGWTALHWAAYCGRERTVASLIALGA 770
           +H  AA G    L+   +      G N +N  D  G+T L WA+  G   TV  L+  GA
Sbjct: 6   IHQLAAQGE---LD--QLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60

Query: 771 APGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                 DP        +   LAS+ G+  I G L
Sbjct: 61  ------DPHILAKERESALSLASTGGYTDIVGLL 88

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 59.7 bits (146), Expect = 2e-10
 Identities = 20/93 (21%), Positives = 29/93 (31%), Gaps = 16/93 (17%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           L +A+A G    +E  TV      G + +       +AL  A+  G    V  L+     
Sbjct: 40  LIWASAFGE---IE--TVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVD 94

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                       +G TP   A    H      L
Sbjct: 95  INIYDW------NGGTPLLYAVRGNHVKCVEAL 121

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 50.1 bits (121), Expect = 5e-07
 Identities = 11/84 (13%), Positives = 22/84 (26%), Gaps = 16/84 (19%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D  G   L +A    +   ++   V      G ++     +G+T +  A   G  +    
Sbjct: 99  DWNGGTPLLYAVRGNH---VK--CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV 153

Query: 765 LIALGAAPGALSDPTPKYPSGRTP 788
           +                      P
Sbjct: 154 IENHIL------KLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 5/59 (8%)

Query: 746 GWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
              ++H  A  G    +   +  G       D   +   G TP   AS+ G      +L
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD---ER--GFTPLIWASAFGEIETVRFL 55

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 71.4 bits (176), Expect = 3e-13
 Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 31/141 (21%)

Query: 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA 754
           LV+ A E G+ P                       E   V  +  + +   G TALHW  
Sbjct: 103 LVEGAKERGQMP----------ESLLNECDE---RE---VNEIGSHVKHCKGQTALHWCV 146

Query: 755 YCGRER--TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSA 812
             G E    +  L+ LGA       PT K  +  TP   A    ++     + ++  S +
Sbjct: 147 GLGPEYLEMIKILVQLGA------SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS 200

Query: 813 LSAISLNKKDGDVAEVTGATA 833
             ++ L+  +       G + 
Sbjct: 201 --SLRLDYANKQ-----GNSH 214

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 68.0 bits (167), Expect = 4e-12
 Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 11/100 (11%)

Query: 710 DHCGQGVLHFAAALGYDWALE-----PTTVAGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D   +  L  A       AL+       + + + +++ +  G + LHWA     E     
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR 229

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
            + +G       D   +      P  L+       +   L
Sbjct: 230 FVEMGI------DVNMEDNEHTVPLYLSVRAAMVLLTKEL 263

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 63.7 bits (156), Expect = 1e-10
 Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 18/100 (18%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D      +H AA  G     +   V      GV+   ++  G TALH A   G   T   
Sbjct: 17  DDENMEKIHVAARKGQ---TD--EVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY 71

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L ++G         +  +  G+ P  LA       +   L
Sbjct: 72  LASVGE------VHSLWH--GQKPIHLAVMANKTDLVVAL 103

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 63.0 bits (154), Expect = 2e-10
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 11/101 (10%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
              GQ  LH+   LG +  LE   +      G +   +D    T L  A        +  
Sbjct: 135 HCKGQTALHWCVGLGPE-YLE--MIKILVQLGASPTAKDKADETPLMRAMEFRNREALDL 191

Query: 765 LIALGAAP-GALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           ++    +              G +    A  I  + +A   
Sbjct: 192 MMDTVPSKSSL--RLDYANKQGNSHLHWAILINWEDVAMRF 230

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 15/136 (11%), Positives = 32/136 (23%), Gaps = 29/136 (21%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           +  G   LH+A  + +    +          G+++N  D      L+ +           
Sbjct: 208 NKQGNSHLHWAILINW---ED--VAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKE 262

Query: 765 LIALGAAPGAL-------SDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAIS 817
           L+                +   P           A+    + +   L E           
Sbjct: 263 LLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL-------DE 315

Query: 818 LNKKDGDVAEVTGATA 833
           + +         GA  
Sbjct: 316 VVRSLNT-----GAGG 326

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.8 bits (151), Expect = 4e-10
 Identities = 21/73 (28%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 732 TTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADL 791
           T    +N    D      +H AA  G+   V  LI  G        PT +   G T   L
Sbjct: 6   TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGV------SPTIQNRFGCTALHL 59

Query: 792 ASSIGHKGIAGYL 804
           A   G    A YL
Sbjct: 60  ACKFGCVDTAKYL 72

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.3 bits (142), Expect = 5e-09
 Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 28/128 (21%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           +  G   LH A   G    ++  T       G   +    +G   +H A    +   V +
Sbjct: 50  NRFGCTALHLACKFGC---VD--TAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVA 102

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAES---DLSSAL-SAISLNK 820
           L+                  G+ P  L +    + +    +        +AL   + L  
Sbjct: 103 LVEGAK------------ERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGP 150

Query: 821 KDGDVAEV 828
           +  ++ ++
Sbjct: 151 EYLEMIKI 158

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 55.6 bits (135), Expect = 4e-08
 Identities = 10/137 (7%), Positives = 24/137 (17%), Gaps = 31/137 (22%)

Query: 710 DHCGQGVLHFAAALGY-------------DWALEPTTVAGVNINFRDVNGWTALHWAAYC 756
           D+     L+ +                            G  +    V     +  AA  
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300

Query: 757 GRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAI 816
            ++  +  L           +      +G   A          +                
Sbjct: 301 SKQEVLQLLQEKLD------EVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPS-------A 347

Query: 817 SLNKKDGDVAEVTGATA 833
            +  +         A +
Sbjct: 348 PVRTRSRS-----RARS 359

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 55.3 bits (134), Expect = 5e-08
 Identities = 12/126 (9%), Positives = 24/126 (19%), Gaps = 18/126 (14%)

Query: 673 FSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPT 732
            S       L ++LL++     +       G             +  AA           
Sbjct: 250 LSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK------Q 303

Query: 733 TVA------GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGR 786
            V          +      G                   +A  A          +  S  
Sbjct: 304 EVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSA------PVRTRSRSRA 357

Query: 787 TPADLA 792
             + ++
Sbjct: 358 RSSAVS 363

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 68.8 bits (169), Expect = 5e-13
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 22/124 (17%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV------AGVNINFRDVNGWTALHWAAYCGRERTVA 763
           D  G   L++A   G+    +   V        + +N ++  G TALH AA+ G    V 
Sbjct: 103 DKAGSTALYWACHGGH---KD--IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQ 157

Query: 764 SLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDG 823
            L+A GA          +    +   D+A++     +      +D     +  +L+  + 
Sbjct: 158 LLLAKGA------RTDLRNIEKKLAFDMATNAACASLLKKKQGTD-----AVRTLSNAED 206

Query: 824 DVAE 827
            + +
Sbjct: 207 YLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 65.0 bits (159), Expect = 8e-12
 Identities = 25/95 (26%), Positives = 33/95 (34%), Gaps = 5/95 (5%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 769
                  LH AA  G    L       V +N  D  G TAL+WA + G +  V  L    
Sbjct: 70  AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLF--- 126

Query: 770 AAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
             P    +   +   G T    A+  G+  I   L
Sbjct: 127 TQPNI--ELNQQNKLGDTALHAAAWKGYADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 14/95 (14%), Positives = 22/95 (23%), Gaps = 11/95 (11%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 769
                       + G         +    +  +  +    LH AA  G    +   +   
Sbjct: 42  TDMSDTNWWKGTSKG-----RTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNR 96

Query: 770 AAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                         +G T    A   GHK I   L
Sbjct: 97  V------GVNGLDKAGSTALYWACHGGHKDIVEML 125

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 11/56 (19%), Positives = 14/56 (25%), Gaps = 6/56 (10%)

Query: 745 NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI 800
            G   +  A Y    RT   L           D         T     +S G  G+
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEG------DIIYITDMSDTNWWKGTSKGRTGL 60

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 15/118 (12%), Positives = 27/118 (22%), Gaps = 25/118 (21%)

Query: 717 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS 776
           +  A         +   +   +I +      T        GR   +         P    
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI---------PSNYV 66

Query: 777 DPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSA-ISLNKKDGDVAEVTGATA 833
               +      P   A+  G+               L   + +N  D       G+TA
Sbjct: 67  AEQAES--IDNPLHEAAKRGNLSWLREC--------LDNRVGVNGLDKA-----GSTA 109

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 67.8 bits (167), Expect = 6e-13
 Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 16/100 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D  G+  L ++   GY    E          G N+N R++ G T L  A+  GR   V  
Sbjct: 98  DFSGKTPLMWSIIFGY---SE--MSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKK 152

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L+ LGA      D + +  +G T    A   G + +    
Sbjct: 153 LLELGA------DISARDLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 65.5 bits (161), Expect = 3e-12
 Identities = 29/133 (21%), Positives = 42/133 (31%), Gaps = 36/133 (27%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D  G   L +A        L           G N+N +D +G T L W+   G       
Sbjct: 65  DIEGSTALIWAVKNNR---LG--IAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF 119

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAIS----LNK 820
           L+  GA      +   +   G TP  +AS  G   I   L           +     ++ 
Sbjct: 120 LLEHGA------NVNDRNLEGETPLIVASKYGRSEIVKKL-----------LELGADISA 162

Query: 821 KDGDVAEVTGATA 833
           +D       G TA
Sbjct: 163 RDLT-----GLTA 170

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 65.5 bits (161), Expect = 3e-12
 Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 36/133 (27%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D   +  L  A  LG         +         +  +D+ G TAL WA    R      
Sbjct: 32  DSYNRTPLMVACMLGM---EN--AIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEK 86

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAIS----LNK 820
           L++ G+      +   K  SG+TP   +   G+  ++ +L           +     +N 
Sbjct: 87  LLSKGS------NVNTKDFSGKTPLMWSIIFGYSEMSYFL-----------LEHGANVND 129

Query: 821 KDGDVAEVTGATA 833
           ++ +     G T 
Sbjct: 130 RNLE-----GETP 137

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 63.9 bits (157), Expect = 1e-11
 Identities = 26/129 (20%), Positives = 33/129 (25%), Gaps = 32/129 (24%)

Query: 709 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL 768
           +D  G+ V                       N+RD    T L  A   G E  +  L+  
Sbjct: 4   MDKNGEIVEKIKDEKSI------NQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVEN 57

Query: 769 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAIS----LNKKDGD 824
                       K   G T    A      GIA  L           +S    +N KD  
Sbjct: 58  FD------KLEDKDIEGSTALIWAVKNNRLGIAEKL-----------LSKGSNVNTKDFS 100

Query: 825 VAEVTGATA 833
                G T 
Sbjct: 101 -----GKTP 104

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 49.7 bits (120), Expect = 7e-07
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           +  G+  L  A+  G     E   V      G +I+ RD+ G TA   A   GR+  +  
Sbjct: 131 NLEGETPLIVASKYGR---SE--IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI 185

Query: 765 LIALGAA 771
              +  A
Sbjct: 186 FTEVRRA 192

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 68.7 bits (169), Expect = 6e-13
 Identities = 28/100 (28%), Positives = 34/100 (34%), Gaps = 10/100 (10%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           ++  Q  LH A          P        AG +   RD  G T LH A   G   +V  
Sbjct: 42  NNLQQTPLHLAVITNQ-----PEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGV 96

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L      P   S       +G T   LAS  G+ GI   L
Sbjct: 97  LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 136

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 16/121 (13%)

Query: 717 LHFAAALGY-DWALEPTTVA---GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP 772
           LH A         +E           +NF++    T LH A    +     +L+  G   
Sbjct: 12  LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC-- 69

Query: 773 GALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGAT 832
               DP  +   G TP  LA   G     G L +S  +  L +I L   + +     G T
Sbjct: 70  ----DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI-LKATNYN-----GHT 119

Query: 833 A 833
            
Sbjct: 120 C 120

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 62.2 bits (152), Expect = 9e-11
 Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 695 LVQKAAEGGKGPCV--LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRD-VNGWTALH 751
           L Q          +   ++ G   LH A+  GY   +E     G ++N ++  NG TALH
Sbjct: 97  LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 156

Query: 752 WAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
            A        V+ L+  GA      D       G +P  L        I   L
Sbjct: 157 LAVDLQNPDLVSLLLKCGA------DVNRVTYQGYSPYQLTWGRPSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 29/131 (22%), Positives = 43/131 (32%), Gaps = 25/131 (19%)

Query: 710 DHCGQGVLHFAAALGYDWALE------PTTVAGVNINFRDVNGWTALHWAAYCGRERTVA 763
           D  G   LH A   G   ++        T      +   + NG T LH A+  G    V 
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

Query: 764 SLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSA-ISLNKKD 822
            L++LGA   A         +GRT   LA  + +  +   L        L     +N+  
Sbjct: 135 LLVSLGADVNAQEP-----CNGRTALHLAVDLQNPDLVSLL--------LKCGADVNRVT 181

Query: 823 GDVAEVTGATA 833
                  G + 
Sbjct: 182 YQ-----GYSP 187

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 53.7 bits (130), Expect = 6e-08
 Identities = 12/90 (13%), Positives = 19/90 (21%), Gaps = 16/90 (17%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           LH A  L      +   V      G ++N     G++           R    L  L   
Sbjct: 155 LHLAVDLQN---PD--LVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL- 208

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIA 801
                +     P         +        
Sbjct: 209 -----ENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 44.8 bits (107), Expect = 6e-05
 Identities = 18/92 (19%), Positives = 25/92 (27%), Gaps = 16/92 (17%)

Query: 743 DVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAG 802
             +G + LH A     +     +I       A      +    +TP  LA       IA 
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 803 YLAESDLSSALSA-ISLNKKDGDVAEVTGATA 833
            L        L A      +D       G T 
Sbjct: 63  AL--------LGAGCDPELRDFR-----GNTP 81

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 70.2 bits (173), Expect = 8e-13
 Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 9/98 (9%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV---AGVNINFRDVNGWTALHWAAYCGRERTVASLI 766
               +  LH A A  +    +   +    G N+N ++ +  T LH AA       +  L 
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH 267

Query: 767 ALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
             GA              G+T    A+  GH      L
Sbjct: 268 KHGA------KMNALDSLGQTALHRAALAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 69.1 bits (170), Expect = 2e-12
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 16/93 (17%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           LH A + G+    E          G  +N  D+  +T LH AA   R    + L++ GA 
Sbjct: 95  LHNACSYGH---YE--VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA- 148

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                DPT     G++  D+A +   +    Y 
Sbjct: 149 -----DPTLVNCHGKSAVDMAPTPELRERLTYE 176

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 64.1 bits (157), Expect = 7e-11
 Identities = 28/96 (29%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 710 DHCGQGVLHFAAALG-YDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL 768
               +  L  AA  G  +  +   T   VN +  D    T LH AA   R R V  L+  
Sbjct: 21  GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH 80

Query: 769 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           GA      D   K   G  P   A S GH  +   L
Sbjct: 81  GA------DVHAKDKGGLVPLHNACSYGHYEVTELL 110

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 58.7 bits (143), Expect = 4e-09
 Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 18/95 (18%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVA------GVNINFRDVNGWTALHWAAYCGRERTVA 763
           +      LH AA   +        V       G  +N  D  G TALH AA  G  +T  
Sbjct: 244 NKDFMTPLHVAAERAH------NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCR 297

Query: 764 SLIALGAAPGALSDPTPKYPSGRTPADLASSIGHK 798
            L++ G+      DP+     G T A + +    +
Sbjct: 298 LLLSYGS------DPSIISLQGFTAAQMGNEAVQQ 326

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.5 bits (127), Expect = 4e-07
 Identities = 13/70 (18%), Positives = 17/70 (24%), Gaps = 7/70 (10%)

Query: 736 GVNINFRDVNGWTALHWAA-YCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASS 794
                         L  AA     E+ +A L  L        +         TP  LA+ 
Sbjct: 14  SAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNV------NCHASDGRKSTPLHLAAG 67

Query: 795 IGHKGIAGYL 804
                I   L
Sbjct: 68  YNRVRIVQLL 77

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.8 bits (120), Expect = 3e-06
 Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 12/68 (17%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVA------GVNINFRDVNGWTALHWAAYCGRERTVA 763
           D      LH AA+      +E   V       G +    + +G +A+  A        + 
Sbjct: 121 DLWQFTPLHEAASKNR---VE---VCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLT 174

Query: 764 SLIALGAA 771
                 + 
Sbjct: 175 YEFKGHSL 182

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 68.2 bits (168), Expect = 9e-13
 Identities = 34/131 (25%), Positives = 45/131 (34%), Gaps = 31/131 (23%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
               +  LH AA  G+   ++         AG NI+    +  T L  AA       V  
Sbjct: 8   HQNKRSPLHAAAEAGH---VD--ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALS--AISLNKKD 822
           LI  GA         PK   G T   LA+  GH  +  YL        LS   + +N +D
Sbjct: 63  LIKAGA------LVDPKDAEGSTCLHLAAKKGHYEVVQYL--------LSNGQMDVNCQD 108

Query: 823 GDVAEVTGATA 833
                  G T 
Sbjct: 109 DG-----GWTP 114

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 65.5 bits (161), Expect = 7e-12
 Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 15/100 (15%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
               +  L  AA   +   LE   V     AG  ++ +D  G T LH AA  G    V  
Sbjct: 41  SEDQRTPLMEAAENNH---LE--AVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQY 95

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L++ G       D   +   G TP   A+   H  +   L
Sbjct: 96  LLSNGQM-----DVNCQDDGGWTPMIWATEYKHVDLVKLL 130

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 65.5 bits (161), Expect = 8e-12
 Identities = 25/133 (18%), Positives = 40/133 (30%), Gaps = 36/133 (27%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D  G   + +A    +   ++   V      G +IN RD      LHWAA+ G       
Sbjct: 108 DDGGWTPMIWATEYKH---VD--LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAIS----LNK 820
           L+A         D       G +P  +A+                      +S    +  
Sbjct: 163 LLAAKC------DLHAVNIHGDSPLHIAARENRYDCVVLF-----------LSRDSDVTL 205

Query: 821 KDGDVAEVTGATA 833
           K+ +     G T 
Sbjct: 206 KNKE-----GETP 213

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 65.1 bits (160), Expect = 9e-12
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 16/100 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D+     LH+AA  G    ++         A  +++  +++G + LH AA   R   V  
Sbjct: 141 DNEENICLHWAAFSGC---VD--IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVL 195

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
            ++  +      D T K   G TP   AS       A  +
Sbjct: 196 FLSRDS------DVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 62.0 bits (152), Expect = 9e-11
 Identities = 29/132 (21%), Positives = 44/132 (33%), Gaps = 33/132 (25%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVA-------GVNINFRDVNGWTALHWAAYCGRERTV 762
           D  G   LH AA  G+    E   V         +++N +D  GWT + WA        V
Sbjct: 74  DAEGSTCLHLAAKKGH---YE---VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127

Query: 763 ASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSA-ISLNKK 821
             L++ G+      D   +          A+  G   IA  L        L+A   L+  
Sbjct: 128 KLLLSKGS------DINIRDNEENICLHWAAFSGCVDIAEIL--------LAAKCDLHAV 173

Query: 822 DGDVAEVTGATA 833
           +       G + 
Sbjct: 174 NIH-----GDSP 180

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 61.7 bits (151), Expect = 2e-10
 Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 20/98 (20%)

Query: 737 VNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIG 796
           +N      N  + LH AA  G       L+  GA      +        RTP   A+   
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGA------NIDTCSEDQRTPLMEAAENN 55

Query: 797 HKGIAGYLAESDLSSALSA-ISLNKKDGDVAEVTGATA 833
           H     YL        + A   ++ KD +     G+T 
Sbjct: 56  HLEAVKYL--------IKAGALVDPKDAE-----GSTC 80

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 48.9 bits (118), Expect = 3e-06
 Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 10/66 (15%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           +  G   LH AA        +   V        ++  ++  G T L  A+   +  +   
Sbjct: 174 NIHGDSPLHIAARENR---YD--CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQ 228

Query: 765 LIALGA 770
           +     
Sbjct: 229 MSKALQ 234

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 68.3 bits (168), Expect = 1e-12
 Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 16/100 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
            H G   L  AA L          +     +  ++N  D  G +ALHWAA          
Sbjct: 121 MHDGTTPLILAARLAV---EG--MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 175

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L+  GA      +   +     TP  LA+  G    A  L
Sbjct: 176 LLKNGA------NKDMQNNREETPLFLAAREGSYETAKVL 209

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 66.3 bits (163), Expect = 4e-12
 Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 16/100 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D  G+  LH+AAA+     ++          G N + ++    T L  AA  G   T   
Sbjct: 154 DDLGKSALHWAAAVNN---VD--AAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 208

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L+   A               R P D+A    H  I   L
Sbjct: 209 LLDHFANRDI------TDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 65.2 bits (160), Expect = 1e-11
 Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D  G+  LH AA        +         A  + N +D  G T LH A     +     
Sbjct: 54  DRTGETALHLAARYSR---SD--AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI 108

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           LI   A      D   +   G TP  LA+ +  +G+   L
Sbjct: 109 LIRNRAT-----DLDARMHDGTTPLILAARLAVEGMLEDL 143

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 54.4 bits (132), Expect = 4e-08
 Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 32/111 (28%)

Query: 737 VNINFRDVNGWTALHWAAYCGRERTVAS-------------LIALGAAPGALSDPTPKYP 783
           +++N R  +G+T L  A+  G      +              I  GA+    +D      
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTD-----R 55

Query: 784 SGRTPADLASSIGHKGIAGYLAESDLSSALSA-ISLNKKDGDVAEVTGATA 833
           +G T   LA+       A  L        L A    N +D       G T 
Sbjct: 56  TGETALHLAARYSRSDAAKRL--------LEASADANIQDNM-----GRTP 93

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 47.5 bits (114), Expect = 1e-05
 Identities = 11/68 (16%), Positives = 15/68 (22%), Gaps = 10/68 (14%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           ++  +  L  AA  G     E  T         N +  D         A        V  
Sbjct: 187 NNREETPLFLAAREGS---YE--TAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 241

Query: 765 LIALGAAP 772
           L       
Sbjct: 242 LDLEHHHH 249

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 65.9 bits (162), Expect = 1e-12
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 13/98 (13%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV---AGVNINFRDVNGWTALHWAAYCGRERTVASLI 766
           D  G   +H AA  G+   L+   V    G ++N  D  G   +H A   G    V+ L 
Sbjct: 65  DTSGTSPVHDAARTGF---LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 767 ALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           A  +      D   +   G TP +LA   G + +   L
Sbjct: 122 A-ES------DLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 64.4 bits (158), Expect = 4e-12
 Identities = 27/124 (21%), Positives = 37/124 (29%), Gaps = 32/124 (25%)

Query: 717 LHFAAALGYDWALEPTTVA------GVNINFRDVNGWTALHWAAYCGRERTVASLIALGA 770
           L  AAA G         V        V+ +  +  G TAL    + G       L+  GA
Sbjct: 6   LSGAAARGDV-----QEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGA 59

Query: 771 APGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSA-ISLNKKDGDVAEVT 829
                  P  +  SG +P   A+  G       L        +     +N  DG      
Sbjct: 60  ------SPNVQDTSGTSPVHDAARTGFLDTLKVL--------VEHGADVNVPDGT----- 100

Query: 830 GATA 833
           GA  
Sbjct: 101 GALP 104

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 62.0 bits (152), Expect = 2e-11
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 19/98 (19%)

Query: 736 GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSI 795
           G + N +D +G + +H AA  G   T+  L+  GA      D      +G  P  LA   
Sbjct: 58  GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA------DVNVPDGTGALPIHLAVQE 111

Query: 796 GHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGATA 833
           GH  +  +L     + +     L+++D       G T 
Sbjct: 112 GHTAVVSFL----AAES----DLHRRDAR-----GLTP 136

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 49.3 bits (119), Expect = 6e-07
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 9/61 (14%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV----AGVNINFRDVNGWTALHWAAYCGRERTVASL 765
           D  G   +H A   G+        V    A  +++ RD  G T L  A   G +  V  L
Sbjct: 98  DGTGALPIHLAVQEGH---TA--VVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152

Query: 766 I 766
            
Sbjct: 153 Q 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 41.6 bits (99), Expect = 2e-04
 Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 6/59 (10%)

Query: 746 GWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
               L  AA  G  + V  L+           P      G+T   +    G   IA  L
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELV-----HPDALNRFGKTALQVMMF-GSTAIALEL 54

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 65.9 bits (162), Expect = 1e-12
 Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 15/100 (15%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D  G  V+H AA  G+   L+  T+        ++N  D  G   LH AA  G  R V  
Sbjct: 67  DRTGFAVIHDAARAGF---LD--TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L+   A     S+   +   G T  DLA   G   +   +
Sbjct: 122 LVKHTA-----SNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 64.7 bits (159), Expect = 3e-12
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 32/131 (24%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           +  G+  L     LG     E          G N + +D  G+  +H AA  G   T+ +
Sbjct: 35  NGFGRTALQ-VMKLGN---PE--IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQT 88

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALS--AISLNKKD 822
           L+   A      D   +   G  P  LA+  GH  +  +L        +   A ++  ++
Sbjct: 89  LLEFQA------DVNIEDNEGNLPLHLAAKEGHLRVVEFL--------VKHTASNVGHRN 134

Query: 823 GDVAEVTGATA 833
                  G TA
Sbjct: 135 HK-----GDTA 140

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 59.7 bits (146), Expect = 2e-10
 Identities = 27/126 (21%), Positives = 39/126 (30%), Gaps = 37/126 (29%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           L  AAA G    LE   +       VN+N ++  G TAL      G       L+  GA 
Sbjct: 9   LASAAARGD---LE--QLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA- 61

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAIS----LNKKDGDVAE 827
                +P  K  +G      A+  G       L           +     +N +D +   
Sbjct: 62  -----NPDLKDRTGFAVIHDAARAGFLDTLQTL-----------LEFQADVNIEDNE--- 102

Query: 828 VTGATA 833
             G   
Sbjct: 103 --GNLP 106

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 50.1 bits (121), Expect = 3e-07
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 13/69 (18%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVA-------GVNINFRDVNGWTALHWAAYCGRERTV 762
           D+ G   LH AA  G+   L    V          N+  R+  G TA   A   GR   V
Sbjct: 100 DNEGNLPLHLAAKEGH---LR---VVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153

Query: 763 ASLIALGAA 771
           + + A GA 
Sbjct: 154 SLMQANGAG 162

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.9 bits (105), Expect = 5e-05
 Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 9/61 (14%)

Query: 745 NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADL-ASSIGHKGIAGY 803
                L  AA  G    + SL+          +   +   GRT   L    +G+  IA  
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNV------NVNAQNGFGRTA--LQVMKLGNPEIARR 55

Query: 804 L 804
           L
Sbjct: 56  L 56

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 67.5 bits (166), Expect = 1e-12
 Identities = 30/131 (22%), Positives = 40/131 (30%), Gaps = 29/131 (22%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-------AGVNINFRDVNGWTALHWAAYCGRERTV 762
           D  G    H A ++G    LE   V          ++N     G T LH A         
Sbjct: 69  DDSGWTPFHIACSVGN---LE--VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123

Query: 763 ASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKD 822
             LI  GA          K    + P   A+S+G   +   L         SA+  N +D
Sbjct: 124 QFLIENGA------SVRIKDKFNQIPLHRAASVGSLKLIELL----CGLGKSAV--NWQD 171

Query: 823 GDVAEVTGATA 833
                  G T 
Sbjct: 172 KQ-----GWTP 177

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 65.9 bits (162), Expect = 5e-12
 Identities = 24/123 (19%), Positives = 35/123 (28%), Gaps = 24/123 (19%)

Query: 717 LHFAAALGYDWALEPTTVA------GVNINFRDVNGWTALHWAAYCGRERTVASLIALGA 770
           LH A             V          +  +D +G   LHW+         + L++   
Sbjct: 6   LHQACMENEF-----FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 771 APGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTG 830
                        SG TP  +A S+G+  +   L        L    LNK         G
Sbjct: 61  NVNLDDY---PDDSGWTPFHIACSVGNLEVVKSL----YDRPLKP-DLNKITNQ-----G 107

Query: 831 ATA 833
            T 
Sbjct: 108 VTC 110

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 54.0 bits (131), Expect = 4e-08
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 19/101 (18%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVN-INFRDVNGWTALHWAAYCGRERTVA 763
           D   Q  LH AA++G    L+   +      G + +N++D  GWT L  A   G      
Sbjct: 137 DKFNQIPLHRAASVGS---LK--LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191

Query: 764 SLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
            L+    A     +       G    D+A    ++ +  + 
Sbjct: 192 LLVEKYGA-----EYDLVDNKGAKAEDVAL---NEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 46.7 bits (112), Expect = 1e-05
 Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 7/60 (11%)

Query: 746 GWTALHWAAYCGRERTVAS-LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
               LH A        V   L +  +          K   GR P   + S     I  +L
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPS------LLLQKDQDGRIPLHWSVSFQAHEITSFL 55

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 66.7 bits (164), Expect = 1e-12
 Identities = 25/124 (20%), Positives = 37/124 (29%), Gaps = 17/124 (13%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 769
            +    +L  A         E        ++  D  G T L+ A +        +LI  G
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 770 AAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVT 829
           A      D   +     +P   A + G   I  Y+    L  A     LNK +       
Sbjct: 63  A------DINLQNSISDSPYLYAGAQGRTEILAYM----LKHA--TPDLNKHNRY----- 105

Query: 830 GATA 833
           G  A
Sbjct: 106 GGNA 109

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 59.0 bits (144), Expect = 6e-10
 Identities = 25/139 (17%), Positives = 38/139 (27%), Gaps = 41/139 (29%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV------AGVNINFRDVNGWTALHWAAYCGRERTVA 763
           +        +A A G     E   +      A  ++N  +  G  AL  AA  G    V 
Sbjct: 69  NSISDSPYLYAGAQGR---TE--ILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123

Query: 764 SLIALGAAPGALSDPTPKYPSGRTP-----ADLASSIGHKGIAGYLAESDLSSALSAIS- 817
            L+  G       D   +   G T           +  ++ I   L           +  
Sbjct: 124 LLLEDGRE-----DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL-----------MEN 167

Query: 818 ---LNKKDGDVAEVTGATA 833
               + KD       G TA
Sbjct: 168 GADQSIKDNS-----GRTA 181

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 58.2 bits (142), Expect = 1e-09
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 22/110 (20%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AG-VNINFRDVNGWTALHWAAYC-----GR 758
           +  G   L  AA  G+   ++   V      G  +I+F++  G+TAL  A          
Sbjct: 103 NRYGGNALIPAAEKGH---ID--NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY 157

Query: 759 ERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD 808
           +  V  L+  GA      D + K  SGRT  D A+  G+  I+  LA+ +
Sbjct: 158 QDIVKLLMENGA------DQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 12/96 (12%), Positives = 21/96 (21%), Gaps = 26/96 (27%)

Query: 742 RDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIA 801
           +       L  A     ++    L                   G TP ++A       IA
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTY------QVDEVDTEGNTPLNIAVHNNDIEIA 55

Query: 802 GYLAESDLSSALSAIS----LNKKDGDVAEVTGATA 833
             L           I     +N ++         + 
Sbjct: 56  KAL-----------IDRGADINLQNSI-----SDSP 75

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 65.8 bits (162), Expect = 1e-12
 Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           DH G   L  AA  G+   LE   V      G ++N  D+ G T LH AA  G    V  
Sbjct: 77  DHAGMTPLRLAALFGH---LE--IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV 131

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L+  GA      D   +   G+T  D++   G++ +A  L
Sbjct: 132 LLKNGA------DVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 62.8 bits (154), Expect = 2e-11
 Identities = 34/126 (26%), Positives = 45/126 (35%), Gaps = 36/126 (28%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           L  AA  G     +   V      G ++N  D +GWT LH AA+ G    V  L+  GA 
Sbjct: 18  LLEAARAGR---DD--EVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA- 71

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAIS----LNKKDGDVAE 827
                D      +G TP  LA+  GH  I   L           +     +N  D +   
Sbjct: 72  -----DVNAVDHAGMTPLRLAALFGHLEIVEVL-----------LKNGADVNANDME--- 112

Query: 828 VTGATA 833
             G T 
Sbjct: 113 --GHTP 116

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 49.7 bits (120), Expect = 6e-07
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 7/70 (10%)

Query: 735 AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASS 794
           +  + +    +    L  AA  GR+  V  L+A GA      D   +  SG TP  LA+ 
Sbjct: 4   SHHHHH-HGSDLGKKLLEAARAGRDDEVRILMANGA------DVNAEDASGWTPLHLAAF 56

Query: 795 IGHKGIAGYL 804
            GH  I   L
Sbjct: 57  NGHLEIVEVL 66

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 46.6 bits (112), Expect = 6e-06
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D  G   LH AA  G+   LE   V      G ++N +D  G TA   +   G E     
Sbjct: 110 DMEGHTPLHLAAMFGH---LE--IVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164

Query: 765 LI 766
           L 
Sbjct: 165 LQ 166

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 65.5 bits (161), Expect = 1e-12
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 16/100 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
               +  LH AA+ G+        V      G ++N +D+   TALHWA     +  V  
Sbjct: 64  TKVDRTPLHMAASEGH---AN--IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           LI  GA      D   +    +T  D++   G++ +A  L
Sbjct: 119 LIKYGA------DVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 63.6 bits (156), Expect = 7e-12
 Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 16/100 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D  G   LH AA  G+       T      AGV+ + R     T LH AA  G    V  
Sbjct: 31  DWLGTSPLHLAAQYGH---FS--TTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEV 85

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L+  GA      D   K     T    A+   H+ +   L
Sbjct: 86  LLKHGA------DVNAKDMLKMTALHWATEHNHQEVVELL 119

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 45.5 bits (109), Expect = 1e-05
 Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 21/90 (23%)

Query: 745 NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           +    L  AA  G++  V  L+A GA       P      G +P  LA+  GH      L
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGA-------PFTTDWLGTSPLHLAAQYGHFSTTEVL 53

Query: 805 AESDLSSALSA-ISLNKKDGDVAEVTGATA 833
                   L A +S + +          T 
Sbjct: 54  --------LRAGVSRDARTKV-----DRTP 70

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 64.3 bits (158), Expect = 2e-12
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D  G   L+ A A G+   LE   V      G ++N  D  G+T LH AA+ G       
Sbjct: 44  DEYGLTPLYLATAHGH---LE--IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEV 98

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L+  GA      D   +   G+T  D++   G++ +A  L
Sbjct: 99  LLKHGA------DVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 60.1 bits (147), Expect = 7e-11
 Identities = 34/126 (26%), Positives = 44/126 (34%), Gaps = 36/126 (28%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           L  AA  G     +   V      G ++N +D  G T L+ A   G    V  L+  GA 
Sbjct: 18  LLEAARAGQ---DD--EVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA- 71

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAIS----LNKKDGDVAE 827
                D       G TP  LA+ IGH  IA  L           +     +N +D     
Sbjct: 72  -----DVNAVDAIGFTPLHLAAFIGHLEIAEVL-----------LKHGADVNAQDKF--- 112

Query: 828 VTGATA 833
             G TA
Sbjct: 113 --GKTA 116

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D  G   LH AA +G+   LE          G ++N +D  G TA   +   G E     
Sbjct: 77  DAIGFTPLHLAAFIGH---LE--IAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEI 131

Query: 765 LI 766
           L 
Sbjct: 132 LQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 27/103 (26%)

Query: 736 GVNINFRD-VNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASS 794
           G + +     +    L  AA  G++  V  L+A GA      D   K   G TP  LA++
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGA------DVNAKDEYGLTPLYLATA 56

Query: 795 IGHKGIAGYLAESDLSSALSAIS----LNKKDGDVAEVTGATA 833
            GH  I   L           +     +N  D       G T 
Sbjct: 57  HGHLEIVEVL-----------LKNGADVNAVDAI-----GFTP 83

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 64.0 bits (157), Expect = 2e-12
 Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 16/96 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
              G+  LH+AA  G    LE   +      G +IN  D +  T L  A Y G    V  
Sbjct: 37  LEGGRKPLHYAADCGQ---LE--ILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKL 91

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI 800
           L++ GA      D T K P G T  +   +   K +
Sbjct: 92  LLSKGA------DKTVKGPDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 59.7 bits (146), Expect = 7e-11
 Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 16/93 (17%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
             +A   G    L+   V      G ++N     G   LH+AA CG+   +  L+  GA 
Sbjct: 11  FMWALKNGD---LD--EVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA- 64

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                D         TP   A   GH      L
Sbjct: 65  -----DINAPDKHHITPLLSAVYEGHVSCVKLL 92

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 14/60 (23%), Positives = 17/60 (28%), Gaps = 6/60 (10%)

Query: 745 NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                  WA   G    V   +A G       D       GR P   A+  G   I  +L
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGE------DVNRTLEGGRKPLHYAADCGQLEILEFL 59

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 62.8 bits (154), Expect = 3e-12
 Identities = 35/93 (37%), Positives = 43/93 (46%), Gaps = 16/93 (17%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           LH AA  G+   LE   V     AG ++N +D NG T LH AA  G    V  L+  GA 
Sbjct: 6   LHLAARNGH---LE--VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 59

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                D   K  +GRTP  LA+  GH  +   L
Sbjct: 60  -----DVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 51.2 bits (124), Expect = 3e-08
 Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 26/93 (27%)

Query: 745 NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           NG T LH AA  G    V  L+  GA      D   K  +GRTP  LA+  GH  +   L
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGA------DVNAKDKNGRTPLHLAARNGHLEVVKLL 54

Query: 805 AESDLSSALSAIS----LNKKDGDVAEVTGATA 833
                      +     +N KD +     G T 
Sbjct: 55  -----------LEAGADVNAKDKN-----GRTP 71

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 50.0 bits (121), Expect = 8e-08
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGA 770
           LH AA  G+   LE   V     AG ++N +D NG T LH AA  G    V  L+  GA
Sbjct: 39  LHLAARNGH---LE--VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 65.9 bits (162), Expect = 4e-12
 Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 16/100 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D  G+  LH+AAA+     ++          G N + ++    T L  AA  G   T   
Sbjct: 122 DDLGKSALHWAAAVNN---VD--AAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L+   A      +        R P D+A    H  I   L
Sbjct: 177 LLDHFA------NRDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 64.7 bits (159), Expect = 9e-12
 Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D  G+  LH AA        +         A  + N +D  G T LH A     +     
Sbjct: 22  DRTGETALHLAARYSR---SD--AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI 76

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           LI   A      D   +   G TP  LA+ +  +G+   L
Sbjct: 77  LIRNRAT-----DLDARMHDGTTPLILAARLAVEGMLEDL 111

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 64.7 bits (159), Expect = 1e-11
 Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 16/100 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
            H G   L  AA L          +     +  ++N  D  G +ALHWAA          
Sbjct: 89  MHDGTTPLILAARLAV---EG--MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 143

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L+  GA      +   +     TP  LA+  G    A  L
Sbjct: 144 LLKNGA------NKDMQNNREETPLFLAAREGSYETAKVL 177

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 61.3 bits (150), Expect = 2e-10
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 19/102 (18%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVA-------GVNINFRDVNGWTALHWAAYCGRERTV 762
           D+ G+  LH A +           V          +++ R  +G T L  AA    E  +
Sbjct: 55  DNMGRTPLHAAVSADA------QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 108

Query: 763 ASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
             LI   A      D       G++    A+++ +   A  L
Sbjct: 109 EDLINSHA------DVNAVDDLGKSALHWAAAVNNVDAAVVL 144

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 58.2 bits (142), Expect = 2e-09
 Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 22/101 (21%)

Query: 736 GVNI-NFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASS 794
           G ++ N  D  G TALH AA   R      L+   A      D   +   GRTP   A S
Sbjct: 14  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA------DANIQDNMGRTPLHAAVS 67

Query: 795 IGHKGIAGYLAESDLSSALS--AISLNKKDGDVAEVTGATA 833
              +G+   L        +   A  L+ +  D     G T 
Sbjct: 68  ADAQGVFQIL--------IRNRATDLDARMHD-----GTTP 95

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 48.6 bits (117), Expect = 3e-06
 Identities = 11/66 (16%), Positives = 15/66 (22%), Gaps = 10/66 (15%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           ++  +  L  AA  G     E  T         N +  D         A        V  
Sbjct: 155 NNREETPLFLAAREGS---YE--TAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 209

Query: 765 LIALGA 770
           L     
Sbjct: 210 LDEYNL 215

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 67.1 bits (165), Expect = 4e-12
 Identities = 28/121 (23%), Positives = 37/121 (30%), Gaps = 27/121 (22%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           LH A        ++   V      G NIN  D  GW  LH AA CG       LI+ GA 
Sbjct: 77  LHQACIDDN---VD--MVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA- 130

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGA 831
                        G TP D+A     + +               ++    D + A     
Sbjct: 131 -----HVGAVNSEGDTPLDIAEEEAMEELLQNE-----------VNRQGVDIEAARKEEE 174

Query: 832 T 832
            
Sbjct: 175 R 175

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 66.8 bits (164), Expect = 7e-12
 Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 16/102 (15%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
              G   LH AAA GY    E   +     A  ++N +D +GWT LH AA+ G+E     
Sbjct: 196 AKSGGTALHVAAAKGY---TE--VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI 250

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE 806
           L+          D       G+T  D+A       +     +
Sbjct: 251 LVENLC------DMEAVNKVGQTAFDVADEDILGYLEELQKK 286

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 57.9 bits (141), Expect = 5e-09
 Identities = 32/127 (25%), Positives = 44/127 (34%), Gaps = 36/127 (28%)

Query: 716 VLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGA 770
           V   A + G     E   V      G +IN+ +V+G TALH A        V  L+  GA
Sbjct: 43  VFLAACSSGD---TE--EVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97

Query: 771 APGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAIS----LNKKDGDVA 826
                 +       G  P   A+S G+  IA YL           IS    +   + +  
Sbjct: 98  ------NINQPDNEGWIPLHAAASCGYLDIAEYL-----------ISQGAHVGAVNSE-- 138

Query: 827 EVTGATA 833
              G T 
Sbjct: 139 ---GDTP 142

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 56.7 bits (138), Expect = 1e-08
 Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 736 GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSI 795
            +N      +G TALH AA  G    +  LI          D   K   G TP   A+  
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY------DVNIKDYDGWTPLHAAAHW 242

Query: 796 GHKGIAGYLAE 806
           G +     L E
Sbjct: 243 GKEEACRILVE 253

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 7/88 (7%)

Query: 717 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS 776
                 +G +  LEP  V       +  +G   L  A   G    V  L+  GA      
Sbjct: 12  EQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRLLERGA------ 64

Query: 777 DPTPKYPSGRTPADLASSIGHKGIAGYL 804
           D       G T    A    +  +  +L
Sbjct: 65  DINYANVDGLTALHQACIDDNVDMVKFL 92

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.1 bits (113), Expect = 2e-05
 Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 21/109 (19%)

Query: 717 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS 776
           L  A         E   +    +N + V+   A               L +         
Sbjct: 143 LDIAEEEAM---EE---LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI------ 190

Query: 777 DPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSA-ISLNKKDGD 824
           +      SG T   +A++ G+  +   L        + A   +N KD D
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEVLKLL--------IQARYDVNIKDYD 231

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 46.7 bits (112), Expect = 2e-05
 Identities = 15/96 (15%), Positives = 22/96 (22%), Gaps = 21/96 (21%)

Query: 739 INFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHK 798
           +   D           + G E  +   +              K+  G      A S G  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRK------KTKVKFDDG-AVFLAACSSGDT 53

Query: 799 GIAGYLAESDLSSALSA-ISLNKKDGDVAEVTGATA 833
                L        L     +N  + D     G TA
Sbjct: 54  EEVLRL--------LERGADINYANVD-----GLTA 76

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 64.3 bits (158), Expect = 5e-12
 Identities = 31/100 (31%), Positives = 38/100 (38%), Gaps = 17/100 (17%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D  G   LH A + G+    E          G  +N  D+  +T LH AA  G+      
Sbjct: 72  DKGGLVPLHNACSYGH---YE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 126

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L+  GA      DPT K   G TP DL    G   I   L
Sbjct: 127 LLQHGA------DPTKKNRDGNTPLDLVKD-GDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 61.3 bits (150), Expect = 5e-11
 Identities = 29/94 (30%), Positives = 34/94 (36%), Gaps = 17/94 (18%)

Query: 717 LHFAAALGYDWALEPTTVA------GVNINFRDVNGWTALHWAAYCGRERTVASLIALGA 770
           L  AA  G    +E  TV        VN    +    T LH+AA   R   V  L+  GA
Sbjct: 12  LLEAAKAGD---VE--TVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA 66

Query: 771 APGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                 D   K   G  P   A S GH  +A  L
Sbjct: 67  ------DVHAKDKGGLVPLHNACSYGHYEVAELL 94

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 61.3 bits (150), Expect = 6e-11
 Identities = 27/133 (20%), Positives = 38/133 (28%), Gaps = 36/133 (27%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           +      LHFAA       +    V      G +++ +D  G   LH A   G       
Sbjct: 39  EGRQSTPLHFAAGYNR---VS--VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 93

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAIS----LNK 820
           L+  GA                TP   A++ G   I   L           +       K
Sbjct: 94  LVKHGA------VVNVADLWKFTPLHEAAAKGKYEICKLL-----------LQHGADPTK 136

Query: 821 KDGDVAEVTGATA 833
           K+ D     G T 
Sbjct: 137 KNRD-----GNTP 144

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 50.1 bits (121), Expect = 4e-07
 Identities = 14/69 (20%), Positives = 19/69 (27%), Gaps = 8/69 (11%)

Query: 736 GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSI 795
           G   N         L  AA  G   TV  L  + +      +         TP   A+  
Sbjct: 1   GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSV-----NCRDIEGRQSTPLHFAAGY 52

Query: 796 GHKGIAGYL 804
               +  YL
Sbjct: 53  NRVSVVEYL 61

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 62.6 bits (153), Expect = 5e-12
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 16/93 (17%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           L  AA  G     +   V      G ++  +D NG T LH AA  G    V  L+  GA 
Sbjct: 28  LLEAARAGQ---DD--EVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA- 81

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                D   +   G+T  D++   G++ +A  L
Sbjct: 82  -----DVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.1 bits (131), Expect = 5e-09
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 9/69 (13%)

Query: 736 GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSI 795
           G ++     +    L  AA  G++  V  L+A GA      D   K  +G TP  LA+  
Sbjct: 17  GSHMG---SDLGKKLLEAARAGQDDEVRILMANGA------DVAAKDKNGSTPLHLAARN 67

Query: 796 GHKGIAGYL 804
           GH  +   L
Sbjct: 68  GHLEVVKLL 76

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 64.7 bits (158), Expect = 5e-12
 Identities = 9/106 (8%), Positives = 21/106 (19%), Gaps = 11/106 (10%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVA------GVNINFRDVNGWTALHWAAYCGRERTVA 763
              G  +       G +     T +       G +I          +    +        
Sbjct: 72  TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENE 131

Query: 764 SLI---ALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE 806
            +     + +  G       K   G T  +             + +
Sbjct: 132 MIPLYKLIFSQSGL--QLLIKDKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 19/128 (14%), Positives = 29/128 (22%), Gaps = 22/128 (17%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS------L 765
           + +      +              G +I  R   G T        G      +       
Sbjct: 41  ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIF 100

Query: 766 IALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDV 825
           +  GA      D T  Y   +                 +    L  + S + L  KD   
Sbjct: 101 LEKGA------DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKW- 153

Query: 826 AEVTGATA 833
               G TA
Sbjct: 154 ----GLTA 157

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 7/68 (10%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-------AGVNINFRDVNGWTALHWAAYCGRERTV 762
               + V+       +    E   +       +G+ +  +D  G TAL +   C +   +
Sbjct: 111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIAL 170

Query: 763 ASLIALGA 770
             +     
Sbjct: 171 KMMEDYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 17/92 (18%), Positives = 22/92 (23%), Gaps = 9/92 (9%)

Query: 717 LHFAAALGYDWALEPTTVAGVNINF---RDVNGWTALHWAAYCGRERTVASLIALGAAPG 773
           +  AA LG           G        +    +  L       R +    LI  GA   
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA--- 66

Query: 774 ALSDPTPKYPSGRTPADLASSIGHKGIAGYLA 805
              D   +   G T        G   I G   
Sbjct: 67  ---DIKSRTKEGTTLFFPLFQGGGNDITGTTE 95

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 65.5 bits (161), Expect = 6e-12
 Identities = 28/130 (21%), Positives = 38/130 (29%), Gaps = 29/130 (22%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           D      +  A   G     E         AG ++   D    T LHWAA   R   V  
Sbjct: 6   DDYSTWDIVKATQYGI---YE--RCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSA-ISLNKKDG 823
            I+ GA    L           TP   A+  GH  +   L        +      +  DG
Sbjct: 61  YISKGAIVDQLGG-----DLNSTPLHWATRQGHLSMVVQL--------MKYGADPSLIDG 107

Query: 824 DVAEVTGATA 833
           +     G + 
Sbjct: 108 E-----GCSC 112

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 64.4 bits (158), Expect = 2e-11
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 12/99 (12%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV---AGVNINFRD-VNGWTALHWAAYCGRERTVASL 765
           D  G   L +AA   +  +++PT +     V++N  D  +  TALHWA   G    ++ L
Sbjct: 139 DQNGMTPLMWAAYRTH--SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL 196

Query: 766 IALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           +  GA      +   +   G +  DLA    +  +  +L
Sbjct: 197 LEAGA------NVDAQNIKGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 62.5 bits (153), Expect = 9e-11
 Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 19/97 (19%)

Query: 738 NINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGH 797
           ++   D      +  A   G       L+  G       D         T    A+    
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGY------DVRQPDKENVTLLHWAAINNR 54

Query: 798 KGIAGYLAESDLSSALSA-ISLNKKDGDVAEVTGATA 833
             +  Y         +S    +++  GD      +T 
Sbjct: 55  IDLVKYY--------ISKGAIVDQLGGD----LNSTP 79

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 60.5 bits (148), Expect = 4e-10
 Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 17/94 (18%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           LH+A   G+   L    V      G + +  D  G + +H AA  G    VA LIA G  
Sbjct: 80  LHWATRQGH---LS--MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ- 133

Query: 772 PGALSDPTPKYPSGRTPADLASSIGH-KGIAGYL 804
                D      +G TP   A+   H       L
Sbjct: 134 -----DVDMMDQNGMTPLMWAAYRTHSVDPTRLL 162

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 51.3 bits (124), Expect = 4e-07
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 10/63 (15%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           LH+A   G         +     AG N++ +++ G +AL  A        +  L     A
Sbjct: 181 LHWAVLAGN---TT--VISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235

Query: 772 PGA 774
            G 
Sbjct: 236 KGY 238

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.9 bits (167), Expect = 7e-12
 Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 25/126 (19%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           LH A+  G    ++   V        ++N +   G++ LH AA  G    V  L+  GA 
Sbjct: 315 LHVASHYGN---IK--LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA- 368

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGA 831
                 P      G TP  +A  +G+  +   L      ++     +   D         
Sbjct: 369 -----SPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSF----VLVSDKH-----RM 414

Query: 832 TAVQTV 837
           +  +TV
Sbjct: 415 SFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 66.4 bits (163), Expect = 2e-11
 Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 16/100 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
              G   LH AA  G+   +E  TV        +       G+T LH AA  G+ R    
Sbjct: 110 TTAGHTPLHIAAREGH---VE--TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L+   A       P     +G TP  +A    +  I   L
Sbjct: 165 LLERDA------HPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 66.4 bits (163), Expect = 2e-11
 Identities = 28/130 (21%), Positives = 39/130 (30%), Gaps = 30/130 (23%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           +   +  LH AA  G+    E             +N +  +  T LH AA  G    V  
Sbjct: 44  NVKVETPLHMAARAGH---TE--VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL 98

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSA-ISLNKKDG 823
           L+   A      +P     +G TP  +A+  GH      L        L    S      
Sbjct: 99  LLENNA------NPNLATTAGHTPLHIAAREGHVETVLAL--------LEKEASQACMTK 144

Query: 824 DVAEVTGATA 833
                 G T 
Sbjct: 145 K-----GFTP 149

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 66.0 bits (162), Expect = 3e-11
 Identities = 32/130 (24%), Positives = 46/130 (35%), Gaps = 30/130 (23%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVA------GVNINFRDVNGWTALHWAAYCGRERTVA 763
           +  G   LH  A  G+        VA      GV ++     G+T LH A++ G  + V 
Sbjct: 275 NKSGLTPLHLVAQEGH------VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK 328

Query: 764 SLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDG 823
            L+   A      D   K   G +P   A+  GH  I   L ++         S N+   
Sbjct: 329 FLLQHQA------DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-------ASPNEVSS 375

Query: 824 DVAEVTGATA 833
           D     G T 
Sbjct: 376 D-----GTTP 380

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 65.6 bits (161), Expect = 4e-11
 Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 16/100 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
              G   LH A        L+   V      G + +    NG+T LH AA   +     S
Sbjct: 176 GKNGLTPLHVAVHHNN---LD--IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 230

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L+  G           +   G TP  LA+  GH  +   L
Sbjct: 231 LLQYGG------SANAESVQGVTPLHLAAQEGHAEMVALL 264

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 63.7 bits (156), Expect = 1e-10
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 736 GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSI 795
           G++      +G T LH A++ G    V +L+  GA       P        TP  +A+  
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGA------SPNVSNVKVETPLHMAARA 57

Query: 796 GHKGIAGYL 804
           GH  +A YL
Sbjct: 58  GHTEVAKYL 66

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 63.7 bits (156), Expect = 2e-10
 Identities = 26/100 (26%), Positives = 33/100 (33%), Gaps = 16/100 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
              G   LH AA  G+    E   V        N N  + +G T LH  A  G       
Sbjct: 242 SVQGVTPLHLAAQEGH---AE--MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 296

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           LI  G               G TP  +AS  G+  +  +L
Sbjct: 297 LIKHGV------MVDATTRMGYTPLHVASHYGNIKLVKFL 330

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 63.3 bits (155), Expect = 2e-10
 Identities = 29/100 (29%), Positives = 36/100 (36%), Gaps = 16/100 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
              G   LH AA       +E          G + N   V G T LH AA  G    VA 
Sbjct: 209 AWNGYTPLHIAAKQNQ---VE--VARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL 263

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L++  A      +      SG TP  L +  GH  +A  L
Sbjct: 264 LLSKQA------NGNLGNKSGLTPLHLVAQEGHVPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.1 bits (113), Expect = 3e-05
 Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 20/104 (19%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
              G   LH AA  G+    +   V      G + N    +G T L  A   G       
Sbjct: 341 TKLGYSPLHQAAQQGH---TD--IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDV 395

Query: 765 LIALGAAPGALSDPTPKYPSGRTPA-------DLASSIGHKGIA 801
           L  +     +            +         D++   G + I+
Sbjct: 396 LKVVTDE-TS--FVLVSDKHRMSFPETVDEILDVSEDEGEELIS 436

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 62.4 bits (153), Expect = 7e-12
 Identities = 32/93 (34%), Positives = 38/93 (40%), Gaps = 16/93 (17%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           LH AA  G+    E   V      G ++N R  +G T LH AA  G    V  L+A GA 
Sbjct: 13  LHNAAKNGH---AE--EVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA- 66

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                D   +   G TP  LA   GH  I   L
Sbjct: 67  -----DVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 53.9 bits (131), Expect = 6e-09
 Identities = 26/102 (25%), Positives = 35/102 (34%), Gaps = 28/102 (27%)

Query: 736 GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSI 795
           G        +G T LH AA  G    V  L++ GA      D   +   G TP  LA+  
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGA------DVNARSKDGNTPLHLAAKN 52

Query: 796 GHKGIAGYLAESDLSSALSAIS----LNKKDGDVAEVTGATA 833
           GH  I   L           ++    +N +  D     G T 
Sbjct: 53  GHAEIVKLL-----------LAKGADVNARSKD-----GNTP 78

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 52.0 bits (126), Expect = 3e-08
 Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 16/84 (19%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
              G   LH AA  G+    E   V      G ++N R  +G T  H A   G    V  
Sbjct: 39  SKDGNTPLHLAAKNGH---AE--IVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKL 93

Query: 765 LIALGAAPGALSDPTPKYPSGRTP 788
           L A GA      D   +       
Sbjct: 94  LDAKGA------DVNARSWGSSHH 111

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 62.7 bits (154), Expect = 7e-12
 Identities = 35/93 (37%), Positives = 43/93 (46%), Gaps = 16/93 (17%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           LH AA  G+   LE   V     AG ++N +D NG T LH AA  G    V  L+  GA 
Sbjct: 39  LHLAARNGH---LE--VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 92

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                D   K  +GRTP  LA+  GH  +   L
Sbjct: 93  -----DVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 62.4 bits (153), Expect = 8e-12
 Identities = 35/93 (37%), Positives = 43/93 (46%), Gaps = 16/93 (17%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           LH AA  G+   LE   V     AG ++N +D NG T LH AA  G    V  L+  GA 
Sbjct: 6   LHLAARNGH---LE--VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 59

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                D   K  +GRTP  LA+  GH  +   L
Sbjct: 60  -----DVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 53.9 bits (131), Expect = 8e-09
 Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 26/93 (27%)

Query: 745 NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           NG T LH AA  G    V  L+  GA      D   K  +GRTP  LA+  GH  +   L
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGA------DVNAKDKNGRTPLHLAARNGHLEVVKLL 54

Query: 805 AESDLSSALSAIS----LNKKDGDVAEVTGATA 833
                      +     +N KD +     G T 
Sbjct: 55  -----------LEAGADVNAKDKN-----GRTP 71

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 50.8 bits (123), Expect = 1e-07
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGA 770
           LH AA  G+   LE   V     AG ++N +D NG T LH AA  G    V  L+  GA
Sbjct: 72  LHLAARNGH---LE--VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 64.5 bits (158), Expect = 2e-11
 Identities = 27/146 (18%), Positives = 44/146 (30%), Gaps = 31/146 (21%)

Query: 699 AAEGGKGPCVLDHCGQGV---------LHFAAALGYDWALEPTTVAGVNINFRDVNGWTA 749
             + G  P  +                   AA    + AL    +   +++  D NG TA
Sbjct: 22  EWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALS-QLLEDRDVDAVDENGRTA 80

Query: 750 LHWAAYCGRERTVASLIALGAAPGALSDPTPK-YPSGRTPADLASSIGHKGIAGYLAESD 808
           L + A  G ++ V  L   GA      D   +    G T   +A+      +   L    
Sbjct: 81  LLFVAGLGSDKCVRLLAEAGA------DLDHRDMRGGLTALHMAAGYVRPEVVEAL---- 130

Query: 809 LSSALSA-ISLNKKDGDVAEVTGATA 833
               +     +  +D       G TA
Sbjct: 131 ----VELGADIEVEDER-----GLTA 147

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 57.6 bits (140), Expect = 4e-09
 Identities = 21/126 (16%), Positives = 26/126 (20%), Gaps = 35/126 (27%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           LH AA        E   V      G +I   D  G TAL  A    +     + +  G  
Sbjct: 115 LHMAAGYVR---PE--VVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR 169

Query: 772 PGALSDPTP-----------------KYPSGRTPADLASSIGHKGIAGYLA-------ES 807
            G                        K   G+    L                       
Sbjct: 170 IGL-EKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAK 228

Query: 808 DLSSAL 813
           D    L
Sbjct: 229 DYEDGL 234

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 44.5 bits (106), Expect = 8e-05
 Identities = 14/100 (14%), Positives = 24/100 (24%), Gaps = 22/100 (22%)

Query: 734 VAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLAS 793
           V  +  +     G          G   +      + A      D   +     TP   A+
Sbjct: 3   VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA------DVVSE---YETPWWTAA 53

Query: 794 SIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGATA 833
               +     L        L    ++  D +     G TA
Sbjct: 54  RKADEQALSQL--------LEDRDVDAVDEN-----GRTA 80

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 64.5 bits (158), Expect = 2e-11
 Identities = 26/116 (22%), Positives = 38/116 (32%), Gaps = 14/116 (12%)

Query: 698 KAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHW 752
             +     P  L + G+  L FAA +G     E   V      G +I  +D  G T LH 
Sbjct: 106 TGSVFHYRPHNLIYYGEHPLSFAACVGS---EE--IVRLLIEHGADIRAQDSLGNTVLHI 160

Query: 753 AAYCGRERTVAS----LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                 +         L++        S        G TP  LA   G+  +  +L
Sbjct: 161 LILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 12/94 (12%)

Query: 717 LHFAAALGYDWALEPTTVA------GVNINFRDVNGWTALHWAAYCGRERTVASLIALGA 770
           L  AA       ++   ++      G  ++ R   G TALH AA          L+    
Sbjct: 7   LLLAAKEND---VQ--ALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61

Query: 771 APGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                   T +   G+T   +A    +  +   L
Sbjct: 62  ELVF-EPMTSELYEGQTALHIAVINQNVNLVRAL 94

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 27/110 (24%), Positives = 34/110 (30%), Gaps = 18/110 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV---AGVNI-----NFRDVNGWTALHWAAYCGRERT 761
              G+  LH AA       LE   V   A   +           G TALH A        
Sbjct: 34  GAMGETALHIAALYDN---LEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNL 90

Query: 762 VASLIALGA-------APGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           V +L+A GA              P      G  P   A+ +G + I   L
Sbjct: 91  VRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL 140

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 26/119 (21%), Positives = 36/119 (30%), Gaps = 29/119 (24%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVN-------------GWTALH 751
            + GQ  LH A        +    V      G +++ R                G   L 
Sbjct: 72  LYEGQTALHIAVINQN---VN--LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126

Query: 752 WAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLS 810
           +AA  G E  V  LI  GA      D   +   G T   +     +K  A  +    LS
Sbjct: 127 FAACVGSEEIVRLLIEHGA------DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLS 179

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 11/71 (15%), Positives = 17/71 (23%), Gaps = 10/71 (14%)

Query: 710 DHCGQGVLHFAAALGY-DWALEPTTV---AGVNIN------FRDVNGWTALHWAAYCGRE 759
           D  G  VLH         +A +   +        +        +  G T    A   G  
Sbjct: 151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI 210

Query: 760 RTVASLIALGA 770
                L+    
Sbjct: 211 VMFQHLMQKRK 221

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 61.3 bits (150), Expect = 3e-11
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 7/70 (10%)

Query: 735 AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASS 794
               I+    +    L  AA  G+  TV  L+  GA      DP      GR P  +   
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGA------DPNALNRFGRRPIQVMMM 54

Query: 795 IGHKGIAGYL 804
            G   +A  L
Sbjct: 55  -GSAQVAELL 63

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 57.8 bits (141), Expect = 5e-10
 Identities = 24/71 (33%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 735 AGVNINFRDVNGWT-ALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLAS 793
            G   N  D    T  +H AA  G   T+  L   GA              GR P DLA 
Sbjct: 66  HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA------RLDVCDAWGRLPVDLAE 119

Query: 794 SIGHKGIAGYL 804
             GH+ IA YL
Sbjct: 120 EQGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 51.3 bits (124), Expect = 8e-08
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGA 770
           +H AA  G+   L+  T+     AG  ++  D  G   +  A   G       L A   
Sbjct: 82  VHDAAREGF---LD--TLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 29/97 (29%), Positives = 37/97 (38%), Gaps = 17/97 (17%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           LH A             V     AG N+N  D +GWT LH AA C       +L+  GAA
Sbjct: 58  LHNAICGAN---YS--IVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA 112

Query: 772 PGALSDPTPKYPSGRTPADLASSI--GHKGIAGYLAE 806
             A +        G T  +       G+   A YLA+
Sbjct: 113 IFATTL-----SDGATAFEKCDPYREGYADCATYLAD 144

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 25/97 (25%), Positives = 31/97 (31%), Gaps = 16/97 (16%)

Query: 713 GQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIA 767
              +L  AA  G    LE   V        + +  +  G TALH A        V  LI 
Sbjct: 21  PLVLLLDAALTGE---LE--VVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT 75

Query: 768 LGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
            GA      +       G TP   A+S     I   L
Sbjct: 76  AGA------NVNSPDSHGWTPLHCAASCNDTVICMAL 106

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 13/72 (18%), Positives = 19/72 (26%), Gaps = 9/72 (12%)

Query: 736 GVNINFRD---VNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLA 792
             +        +N    L  AA  G    V   +          DP+     G T    A
Sbjct: 8   AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN------DPSQPNEEGITALHNA 61

Query: 793 SSIGHKGIAGYL 804
               +  I  +L
Sbjct: 62  ICGANYSIVDFL 73

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 735 AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
             V +  RD    T   WAA  G+E  V  
Sbjct: 177 ESVTVLRRDGPEETDWWWAALHGQEGYVPR 206

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 64.4 bits (158), Expect = 3e-11
 Identities = 25/105 (23%), Positives = 34/105 (32%), Gaps = 14/105 (13%)

Query: 717 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS 776
           +H AA  G+  +L      G  +N    +  + LH A   G    V  L+  GA      
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA------ 116

Query: 777 DPTPKYPSGRTPADLASSIGHKGIAGYL--------AESDLSSAL 813
                     TP   A   G       L         ESDL+S +
Sbjct: 117 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPI 161

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 63.3 bits (155), Expect = 8e-11
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 17/100 (17%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           +      +H AA  G+   +E   V      G NI+ +  +  T L+ A    +   V  
Sbjct: 154 ESDLASPIHEAARRGH---VE--CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK 208

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           L+  GA                +P         + +A  L
Sbjct: 209 LLESGADVNQGKG-------QDSPLHAVVRTASEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 57.9 bits (141), Expect = 5e-09
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 9/93 (9%)

Query: 713 GQGVLHFAAALGY-DWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
            QG +  +   G  D+         +  +   V+ W+ +H AA  G + ++ +LI+ G  
Sbjct: 27  KQGGMDGSKPAGPRDFPGIRLLSNPLMGD--AVSDWSPMHEAAIHGHQLSLRNLISQGW- 83

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                          +P   A   GH      L
Sbjct: 84  -----AVNIITADHVSPLHEACLGGHLSCVKIL 111

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.4 bits (132), Expect = 6e-08
 Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 17/86 (19%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           L+ A             V     +G ++N +     + LH       E     L+  GA 
Sbjct: 194 LYLACENQQ---RA--CVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGA- 246

Query: 772 PGALSDPTPKYPSGRTPADLASSIGH 797
                D   K   G+ P +L      
Sbjct: 247 -----DTQAKNAEGKRPVELVPPESP 267

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 42.5 bits (101), Expect = 5e-04
 Identities = 8/59 (13%), Positives = 12/59 (20%), Gaps = 11/59 (18%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGA 770
           LH           E          G +   ++  G   +              L   GA
Sbjct: 226 LHAVVRTAS---EE--LACLLMDFGADTQAKNAEGKRPVELVPPESPL-AQLFLEREGA 278

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 64.0 bits (157), Expect = 4e-11
 Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 30/135 (22%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           +  G   LH A  +      +   V      G +   R  NG T    AA  G  + +  
Sbjct: 36  EEGGWTPLHNAVQMSR---ED--IVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKL 90

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSA-ISLNKKDG 823
            ++ GA      D       G T    A+  G      +L             ++N +  
Sbjct: 91  FLSKGA------DVNECDFYGFTAFMEAAVYGKVKALKFL--------YKRGANVNLRRK 136

Query: 824 DVAEVT-----GATA 833
              +       GATA
Sbjct: 137 TKEDQERLRKGGATA 151

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.5 bits (153), Expect = 2e-10
 Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 9/99 (9%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTT----VAGVNINFRDVNGWTALHWAAYCGRERTVASL 765
           D+ G+  L  A     D  +E  T      G ++N R   G T L  A        V  L
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

Query: 766 IALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           +          +       G+T   LA  +  K IA  L
Sbjct: 239 L---EQEHI--EINDTDSDGKTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 61.7 bits (151), Expect = 2e-10
 Identities = 35/141 (24%), Positives = 48/141 (34%), Gaps = 32/141 (22%)

Query: 703 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTV------AGVNINFRDVNGWTALHWAAYC 756
            +    L   G   L  AA  G+   +E   +       G ++N  D  G  AL  A   
Sbjct: 138 KEDQERLRKGGATALMDAAEKGH---VE--VLKILLDEMGADVNACDNMGRNALIHALLS 192

Query: 757 GRERTVAS----LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSA 812
             +  V +    L+  GA      D   +   G+TP  LA    H G+   L    L   
Sbjct: 193 SDDSDVEAITHLLLDHGA------DVNVRGERGKTPLILAVEKKHLGLVQRL----LEQE 242

Query: 813 LSAISLNKKDGDVAEVTGATA 833
              I +N  D D     G TA
Sbjct: 243 --HIEINDTDSD-----GKTA 256

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 11/67 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV------AGVNINFRDVNGWTALHWAAYCGRERTVA 763
              G+  L  A    +   L    V        + IN  D +G TAL  A     ++   
Sbjct: 216 GERGKTPLILAVEKKH---LG--LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270

Query: 764 SLIALGA 770
            L   GA
Sbjct: 271 LLCKRGA 277

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 45.2 bits (108), Expect = 7e-05
 Identities = 16/96 (16%), Positives = 24/96 (25%), Gaps = 27/96 (28%)

Query: 743 DVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPK-YPSGRTPADLASSIGHKGIA 801
            V     L  A        V  L+  GA      +   +    G TP   A  +  + I 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGA------NVNFQEEEGGWTPLHNAVQMSREDIV 55

Query: 802 GYLAESDLSSALSAIS----LNKKDGDVAEVTGATA 833
             L           +        +  +     GAT 
Sbjct: 56  ELL-----------LRHGADPVLRKKN-----GATP 75

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 63.0 bits (154), Expect = 5e-11
 Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 13/93 (13%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           LH A   G+    E   V      GVN+N  D +GWT LH AA C   +    L+  GAA
Sbjct: 74  LHNAVCAGH---TE--IVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
             A+   T                G+   + +L
Sbjct: 129 VFAM---TYSDMQTAADKCEEMEEGYTQCSQFL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 60.3 bits (147), Expect = 5e-10
 Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 7/95 (7%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 769
           +  GQ  L                  G+ + F        L  ++  G    V  +I   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 770 AAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                  DP+     G T    A   GH  I  +L
Sbjct: 61  D------DPSLPNDEGITALHNAVCAGHTEIVKFL 89

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 59.9 bits (146), Expect = 6e-10
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 16/97 (16%)

Query: 713 GQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIA 767
              +L  ++  G     +   V        + +  +  G TALH A   G    V  L+ 
Sbjct: 37  PLALLLDSSLEGE---FD--LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ 91

Query: 768 LGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
            G       +       G TP   A+S  +  +  +L
Sbjct: 92  FGV------NVNAADSDGWTPLHCAASCNNVQVCKFL 122

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 44.5 bits (106), Expect = 8e-05
 Identities = 13/129 (10%), Positives = 31/129 (24%), Gaps = 21/129 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNG---WTALHWAAYCGRERT 761
           D  G   LH AA+      ++         +G  +     +              G  + 
Sbjct: 100 DSDGWTPLHCAASCNN---VQ--VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 154

Query: 762 VASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKK 821
              L  +    G ++                       +   + E D  + +     ++ 
Sbjct: 155 SQFLYGVQEKMGIMNK------GVIYALWDYEPQNDDELP--MKEGDCMTIIHREDEDEI 206

Query: 822 DGDVAEVTG 830
           +   A +  
Sbjct: 207 EWWWARLND 215

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 63.3 bits (155), Expect = 6e-11
 Identities = 16/90 (17%), Positives = 20/90 (22%), Gaps = 16/90 (17%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           LH A             +     AG +   R   G T L  A           L A GA 
Sbjct: 196 LHLAVEAQA---AS--VLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA- 249

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIA 801
                          +P   + S       
Sbjct: 250 -----PEPEDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 63.3 bits (155), Expect = 8e-11
 Identities = 24/153 (15%), Positives = 35/153 (22%), Gaps = 20/153 (13%)

Query: 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTV-AGVNINF 741
              LL+ +             +                +    +   EP      + +  
Sbjct: 94  ACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA 153

Query: 742 RDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIA 801
            + +G T LH A        V  L   GA              GRTP  LA       + 
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP-----TCGRTPLHLAVEAQAASVL 208

Query: 802 GYLAESDLSSALSA-ISLNKKDGDVAEVTGATA 833
             L        L A      +        G T 
Sbjct: 209 ELL--------LKAGADPTARMYG-----GRTP 228

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.5 bits (145), Expect = 1e-09
 Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 17/101 (16%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVN-GWTALHWAAYCGRERTVA 763
           ++ G   LH A         E   V     AG ++N  +   G T LH A        + 
Sbjct: 155 NYDGHTPLHVAVIHKD---AE--MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209

Query: 764 SLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
            L+  GA      DPT +   GRTP   A    +  +A  L
Sbjct: 210 LLLKAGA------DPTARMYGGRTPLGSALLRPNPILARLL 244

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.1 bits (144), Expect = 2e-09
 Identities = 30/138 (21%), Positives = 41/138 (29%), Gaps = 32/138 (23%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           +  GQ  LH AA LG        TV     AG  +   +  G TALH A           
Sbjct: 42  NDLGQTALHLAAILGE---AS--TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACV 96

Query: 765 LIALGAAPGA---------LSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSA 815
           L+    +              D TP   +   PA + S    +       E         
Sbjct: 97  LLQPRPSHPRDASDTYLTQSQDCTPD--TSHAPAAVDSQPNPENEEEPRDED------WR 148

Query: 816 ISLNKKDGDVAEVTGATA 833
           + L  ++ D     G T 
Sbjct: 149 LQLEAENYD-----GHTP 161

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 58.7 bits (143), Expect = 3e-09
 Identities = 23/96 (23%), Positives = 30/96 (31%), Gaps = 19/96 (19%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVN---INFRDVNGWTALHWAAYCGRERTVASLIAL 768
           LH A    +        +            ++ ++  G TALH AA  G   TV  L A 
Sbjct: 13  LHLAVIHQH---EP--FLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 769 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           GA              G T   LA  +     A  L
Sbjct: 68  GA------GVLVAERGGHTALHLACRVRAHTCACVL 97

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.5 bits (127), Expect = 3e-07
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 17/96 (17%)

Query: 739 INFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHK 798
             +   +G TALH A     E  +  L+   A    L     +   G+T   LA+ +G  
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL---QNDLGQTALHLAAILGEA 58

Query: 799 GIAGYLAESDLSSALSA-ISLNKKDGDVAEVTGATA 833
                L         +A   +   +       G TA
Sbjct: 59  STVEKL--------YAAGAGVLVAERG-----GHTA 81

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 60.6 bits (148), Expect = 7e-11
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 12/98 (12%)

Query: 735 AGVNINFRDVNGWT-ALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLAS 793
            G   N  D    T  +H AA  G   T+  L   GA          +   GR P DLA 
Sbjct: 66  HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA------RLDVRDAWGRLPVDLAE 119

Query: 794 SIGHKGIAGYL----AESDLSSALSAISLNKKDGDVAE 827
            +GH+ +A YL      +  S+     +      D+ +
Sbjct: 120 ELGHRDVARYLRAAAGGTRGSNHARIDAAE-GPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 59.4 bits (145), Expect = 2e-10
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 21/90 (23%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           +H AA  G+   L+  T+     AG  ++ RD  G   +  A   G       L A    
Sbjct: 82  VHDAAREGF---LD--TLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG 136

Query: 772 PGALSDPTPKYPSGRTPADLASSIGHKGIA 801
                        G   A + ++ G   I 
Sbjct: 137 -----------TRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 53.2 bits (129), Expect = 3e-08
 Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 9/70 (12%)

Query: 735 AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASS 794
                +         L  AA  GR   V +L+  GA      +P      GR P  +   
Sbjct: 3   PAAGSSMEP--SADWLATAAARGRVEEVRALLEAGA------NPNAPNSYGRRPIQVMMM 54

Query: 795 IGHKGIAGYL 804
            G   +A  L
Sbjct: 55  -GSARVAELL 63

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 65.5 bits (160), Expect = 8e-11
 Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 9/152 (5%)

Query: 917  DEPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKI 976
             + + AA  RIQ   R W  RK ++ +R+  I IQ YVRGHQ R     +        + 
Sbjct: 764  ADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFL--------RR 815

Query: 977  ILRWRRRGSGLRGFKSETLTASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMV 1036
                       R +              + +     +L   + Q   R  K++  ++  V
Sbjct: 816  TRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSI-IIQKHV 874

Query: 1037 QYPEARDQYRRLLNVVNEIQETKAMALSNAEE 1068
            +   AR  Y R L  +  +Q      ++  E 
Sbjct: 875  RGWLARVHYHRTLKAIVYLQCCYRRMMAKREL 906

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 23/166 (13%), Positives = 58/166 (34%), Gaps = 20/166 (12%)

Query: 922  AAATRIQNKFRSWKGRKDFLIIRKQ--IIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILR 979
             AA  IQ   R  + R     +R+    I IQ + R + VRK Y+ +  +   ++ ++  
Sbjct: 792  RAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRG 851

Query: 980  WRRRGSGLRGFKSETLTASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYP 1039
            +  R       +              +            +    R  KA+  ++   +  
Sbjct: 852  YLVRNKYQMMLREH-----------KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRM 900

Query: 1040 EARDQYRRLLNVVNEIQETKAMALSNAEETADFDDDLVDIEALLDD 1085
             A+ + ++L     +I+          +     ++ ++ ++  +D+
Sbjct: 901  MAKRELKKL-----KIEARSVERY--KKLHIGLENKIMQLQRKIDE 939

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.2 bits (115), Expect = 2e-05
 Identities = 39/215 (18%), Positives = 68/215 (31%), Gaps = 25/215 (11%)

Query: 867  TQAAARIHQVFRVQSFQKKQLKEYGNDTFGISDERALSLVAVKTQKPGHHDEPVHAAATR 926
            T+AA  I +  R+   +K+            +  R          +  +        +  
Sbjct: 816  TRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGY------LVRNKYQMMLREHKSII 869

Query: 927  IQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSG 986
            IQ   R W  R  +    K I+ +Q   R    ++  KK+     I  + + R+++   G
Sbjct: 870  IQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKL----KIEARSVERYKKLHIG 925

Query: 987  LRGFKSETLTASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQYPEARDQYR 1046
            L   K   L           +  +Y  L E     E        +++S V+         
Sbjct: 926  LEN-KIMQLQRK-----IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE--------- 970

Query: 1047 RLLNVVNEIQETKAMALSNAEETADFDDDLVDIEA 1081
            RL     E +      LS  EE A    +L   + 
Sbjct: 971  RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 62.0 bits (150), Expect = 4e-10
 Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 6/108 (5%)

Query: 685 KLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDV 744
           K   + L  W+V+K     +             +          L+   +    +N +D 
Sbjct: 222 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 281

Query: 745 NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLA 792
           NG T L+ AA  G    V +L+  GA      DP     SG  P D  
Sbjct: 282 NGDTCLNIAARLGNISIVDALLDYGA------DPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.8 bits (134), Expect = 3e-08
 Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 22/137 (16%)

Query: 709 LDHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVNGWTALHWAAY---CGRER 760
           +D  G   LH+  ++     LE   V      G N  + D  G + L  A          
Sbjct: 127 VDEHGNTPLHWLTSIAN---LE--LVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG 181

Query: 761 TVASLIALGAAPGALSDPTPKYPSGRTP----ADLASSIGHKGIAGYLAESDLSSALSAI 816
           T  +L+        L D        RT        +   G    A Y  +  +   +   
Sbjct: 182 TFEALLDYLYPCLILED-----SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 236

Query: 817 SLNKKDGDVAEVTGATA 833
           +   + G   + +    
Sbjct: 237 NRPIQSGTNEKESKPND 253

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 20/117 (17%), Positives = 32/117 (27%), Gaps = 15/117 (12%)

Query: 718 HFAAALGYDWALEPTTVAGVNINF-RDVNGWTALHWAAYCGRERTVASLIALGAAPGALS 776
           H +         +      +N+N   D +G T LHW         V  L+  G+      
Sbjct: 102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS------ 155

Query: 777 DPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGATA 833
           +       G +    A    +   +G      L   L    L  +D         T 
Sbjct: 156 NRLYGDNMGESCLVKAVKSVNNYDSGTFEA--LLDYL-YPCLILEDSM-----NRTI 204

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 61.0 bits (149), Expect = 4e-10
 Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 26/121 (21%)

Query: 717 LHFAAALGYDWALEPTTV---AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPG 773
           LH AA L      +   +   +G++ +  D  G TAL++A   G  +TV   +       
Sbjct: 66  LHQAATLED---TKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW--- 119

Query: 774 ALSDPTPKYPSG-RTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGAT 832
                     +G +T    A  +    I  Y         LS I               +
Sbjct: 120 ---RLMFYGKTGWKTSFYHAVMLNDVSIVSYF--------LSEIPSTFDLAI-----LLS 163

Query: 833 A 833
            
Sbjct: 164 C 164

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 59.5 bits (145), Expect = 1e-09
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 22/100 (22%)

Query: 735 AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASS 794
           +  +    DV+G +A ++A      R V +L+  GA                 P   A++
Sbjct: 20  SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGA------LKNLL--ENEFPLHQAAT 71

Query: 795 IGHKGIAGYLAESDLSSALSA-ISLNKKDGDVAEVTGATA 833
           +    I   L        L + +  ++ D       G TA
Sbjct: 72  LEDTKIVKIL--------LFSGLDDSQFDDK-----GNTA 98

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 11/93 (11%), Positives = 20/93 (21%), Gaps = 16/93 (17%)

Query: 717 LHFAAALGYDWALEPTTV----AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP 772
            + A  L     +    V    + +   F      + +H     G    +  L+      
Sbjct: 133 FYHAVMLND---VS--IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMT-- 185

Query: 773 GALSDPTPKYPSGRTPA-DLASSIGHKGIAGYL 804
                          P   LA       +   L
Sbjct: 186 ----STNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 49.4 bits (119), Expect = 3e-06
 Identities = 8/114 (7%), Positives = 24/114 (21%), Gaps = 31/114 (27%)

Query: 717 LHFAAALGYDWALEPTTV-----AGVNINFRDVNGWT-ALHWAAYCGRERTVASLIALGA 770
           +H     G+   ++   +        + N  +   +   +  A        + +L     
Sbjct: 165 IHITIKNGH---VD--MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI 219

Query: 771 APGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGD 824
                        +  +       +    IA  + E         +        
Sbjct: 220 -------------NIYSANLENVLLDDAEIAKMIIEKH-------VEYKSDSYT 253

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 62.2 bits (151), Expect = 8e-10
 Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 7/158 (4%)

Query: 917  DEPVHAAATRIQNKFRSWKGRKDFLIIRKQ---IIKIQAYVRGHQVRKNYKKIIWSVGIM 973
            D  +       Q + R +  RK F   ++Q   I  IQ  VR      ++      +   
Sbjct: 788  DLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPW--MXLFFX 845

Query: 974  EKIILRWRRRGSGLRGFKSETLTASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVK 1033
               +L+  R+   ++    E            A+  + +       +++  LQ+ L    
Sbjct: 846  IXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAET 905

Query: 1034 SMVQYPEARDQYRRLLNVVNEIQETKAMALSNAEETAD 1071
             +    EA +   RL     E++E      +  EE  +
Sbjct: 906  ELYA--EAEEMRVRLAAKKQELEEILHEMEARIEEEEE 941

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 25/129 (19%), Positives = 32/129 (24%), Gaps = 25/129 (19%)

Query: 717 LHFAAALGYDWALE--------------PTTVAGVNINFRDVNGWTALHWAAYCGRERTV 762
           L  A     D                  P  +           G +ALH A      + V
Sbjct: 47  LMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCV 106

Query: 763 ASLIALGA-----APGALSDPTPKYPS--GRTPADLASSIGHKGIAGYLAESDLSSALSA 815
             L+  GA     A G             G  P  LA+      +  YL    L +    
Sbjct: 107 KLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL----LENPHQP 162

Query: 816 ISLNKKDGD 824
            SL   D  
Sbjct: 163 ASLEATDSL 171

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 18/95 (18%), Positives = 25/95 (26%), Gaps = 23/95 (24%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 769
           D  G  VLH                    +   +    +AL    Y G  +  A L    
Sbjct: 169 DSLGNTVLHALV-----------------MIADNSPENSALVIHMYDGLLQMGARLCPTV 211

Query: 770 AAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                          G TP  LA+  G   I  ++
Sbjct: 212 Q------LEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 13/108 (12%), Positives = 27/108 (25%), Gaps = 16/108 (14%)

Query: 713 GQGVLHFAAALG--------YDWALEPTTVAGVNINFRDVNGWTALHWAA---YCGRERT 761
            +  L    + G         ++    +     +       G T L  A      G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 762 VASLIALGAAPGAL-----SDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           +  L+ +    G       +  T ++  G +   +A           L
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLL 109

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 17/107 (15%), Positives = 24/107 (22%), Gaps = 26/107 (24%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRDVN-------------GWTALH 751
            + G   LH A             V      G +++ R                G   L 
Sbjct: 87  FYQGHSALHIAIEKRS-----LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLS 141

Query: 752 WAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHK 798
            AA   +   V  L+     P   +        G T       I   
Sbjct: 142 LAACTKQWDVVTYLLENPHQP---ASLEATDSLGNTVLHALVMIADN 185

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 8/63 (12%), Positives = 14/63 (22%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 769
           +      L      G                  +  G T L  AA  G+      ++   
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244

Query: 770 AAP 772
            + 
Sbjct: 245 FSG 247

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 60.8 bits (148), Expect = 2e-09
 Identities = 26/151 (17%), Positives = 57/151 (37%), Gaps = 8/151 (5%)

Query: 921  HAAATRIQNKFRSWKGRKDFLIIRKQ---IIKIQAYVRGHQVRKNYKKIIWSVGIMEKII 977
                 R     +    ++  L  R     I  +Q+++  H+  K  +K      +  ++ 
Sbjct: 761  SDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVS-ELE 819

Query: 978  LRWRRRGSGLRGFKSETLTASSSMVATSAKEDDYDFLKEGRKQKEERLQKALARVKSMVQ 1037
              +    + LR  K E   A +  +  +  +  +  L++  ++  E L+  L R K +  
Sbjct: 820  AIYNSLQTKLRLIKREPFVAPAG-LTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIA- 877

Query: 1038 YPEARDQYRRLLNVVNEIQETKAMALSNAEE 1068
                  +Y R+L  +     TK++ L + E 
Sbjct: 878  --VLLQKYNRILKKLENWATTKSVYLGSNET 906

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 23/134 (17%), Positives = 32/134 (23%), Gaps = 26/134 (19%)

Query: 713 GQGVLHFAAALGYDWALE--------------PTTVAGVNINFRDVNGWTALHWAAYCGR 758
           G+  L  A         +                             G TALH A     
Sbjct: 46  GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC 105

Query: 759 ERTVASLIALGA--------APGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLS 810
           +  V  L+  GA              D    +  G  P  LA+      I  YL      
Sbjct: 106 KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL----TE 161

Query: 811 SALSAISLNKKDGD 824
           +      L ++D  
Sbjct: 162 NGHKQADLRRQDSR 175

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 19/108 (17%), Positives = 28/108 (25%), Gaps = 27/108 (25%)

Query: 717 LHFAAALGYDWALEPTTV--------AGVNINFRDVNGWTALHWAAYCGRERT------- 761
           L  AA         P  V           ++  +D  G T LH                 
Sbjct: 144 LSLAACTNQ-----PHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVT 198

Query: 762 --VASLIALGA---APGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                L+   A       L         G +P  +A+  G  GI  ++
Sbjct: 199 KMYDLLLIKCAKLFPDTNLEALLNND--GLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 16/78 (20%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV---------AGVNIN-------FRDVNGWTALHWA 753
           D  G  VLH   A+  +       V             +          + +G + L  A
Sbjct: 173 DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA 232

Query: 754 AYCGRERTVASLIALGAA 771
           A  G+      +I    A
Sbjct: 233 AKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 12/81 (14%)

Query: 736 GVNINFRDV----NGWTALHWAAYC---GRERTVASLIALGAAPGAL-----SDPTPKYP 783
              +   +      G T L  A      GR  T+  L+ +    G +     S     Y 
Sbjct: 32  KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY 91

Query: 784 SGRTPADLASSIGHKGIAGYL 804
            G+T   +A     K     L
Sbjct: 92  RGQTALHIAIERRCKHYVELL 112

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.1 bits (138), Expect = 7e-09
 Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 12/98 (12%)

Query: 735 AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGA--------APGALSDPTPKYPSGR 786
              +       G TALH A        V  L+  GA             +   P +  G 
Sbjct: 90  VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGE 149

Query: 787 TPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGD 824
            P  LA+      I  +L ++    A     ++ +D  
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPA----DISARDSV 183

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 53.6 bits (129), Expect = 9e-08
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 16/104 (15%)

Query: 717 LHFAAALGYDWALE-------PTTVAGVNINFRDV-NGWTALHWA---AYCGRERTVASL 765
           +  A A      LE        +     +  F+D   G T L  A    + G+  T+A L
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 766 IALGAAPGALS-----DPTPKYPSGRTPADLASSIGHKGIAGYL 804
           + +     +L        T  Y  G+T   +A    +  +   L
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 27/126 (21%), Positives = 41/126 (32%), Gaps = 27/126 (21%)

Query: 703 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTV--------AGVNINFRDVNGWTALHWAA 754
                   + G+  L  AA       L    V           +I+ RD  G T LH   
Sbjct: 138 KTKGRPGFYFGELPLSLAACTNQ---LA--IVKFLLQNSWQPADISARDSVGNTVLHALV 192

Query: 755 YCGRERTVAS---------LIALGA---APGALSDPTPKYPSGRTPADLASSIGHKGIAG 802
                    +         ++ LGA       L + T +   G TP  LA+S G  G+  
Sbjct: 193 EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK--GLTPLALAASSGKIGVLA 250

Query: 803 YLAESD 808
           Y+ + +
Sbjct: 251 YILQRE 256

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 18/123 (14%), Positives = 32/123 (26%), Gaps = 27/123 (21%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFRD--------------VNGWTAL 750
            + GQ  LH A           T V      G ++                    G   L
Sbjct: 98  YYKGQTALHIAIERRN-----MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPL 152

Query: 751 HWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLS 810
             AA   +   V  L+     P   +D + +   G T       +    +      + + 
Sbjct: 153 SLAACTNQLAIVKFLLQNSWQP---ADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209

Query: 811 SAL 813
           + +
Sbjct: 210 NEI 212

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 15/105 (14%), Positives = 23/105 (21%), Gaps = 29/105 (27%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVA----------------GVNINFRDVNGWTALHWA 753
           D  G  VLH    +  +       V                        +  G T L  A
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240

Query: 754 AYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHK 798
           A  G+   +A ++                         A+   H 
Sbjct: 241 ASSGKIGVLAYILQREI-------------HEPECRHAAAHHHHH 272

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 31/156 (19%), Positives = 47/156 (30%), Gaps = 18/156 (11%)

Query: 717 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS 776
            + A +   D   E            D +  TALHWA   G    V  L+ LG       
Sbjct: 11  CNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV------ 64

Query: 777 DPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGATAVQT 836
               K  +G +P  +A+S G   I   L             +N  + +     G T +  
Sbjct: 65  PVNDKDDAGWSPLHIAASAGXDEIVKALLV-------KGAHVNAVNQN-----GCTPLHY 112

Query: 837 VPQRCPTPVSDGDLPYGLSMKDSLAAVRNATQAAAR 872
              +    ++   L  G +          A   AA 
Sbjct: 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 37/167 (22%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 769
           D  G   LH AA+ G D  ++   V G ++N  + NG T LH+AA   R      L+  G
Sbjct: 70  DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129

Query: 770 AAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVT 829
           A      +P  K     T    A++ G+  +   L            S N +D +     
Sbjct: 130 A------NPDAKDHYDATAMHRAAAKGNLKMVHILLF-------YKASTNIQDTE----- 171

Query: 830 GATAVQTVPQRCPTPVSDGDLPYGLSMKDSLAAVRNATQAAARIHQV 876
           G T +           +   +  G S+       +   Q A     +
Sbjct: 172 GNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGL 218

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 28/143 (19%), Positives = 47/143 (32%), Gaps = 11/143 (7%)

Query: 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA 754
           +V+     G     ++  G   LH+AA+             G N + +D    TA+H AA
Sbjct: 88  IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA 147

Query: 755 YCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALS 814
             G  + V  L+   A          +   G TP  LA        A +L         +
Sbjct: 148 AKGNLKMVHILLFYKA------STNIQDTEGNTPLHLACDEERVEEAKFLVTQG-----A 196

Query: 815 AISLNKKDGDVAEVTGATAVQTV 837
           +I +  K+           +  +
Sbjct: 197 SIYIENKEEKTPLQVAKGGLGLI 219

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 27/110 (24%), Positives = 37/110 (33%), Gaps = 8/110 (7%)

Query: 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA 754
           +     EGG  P   DH     +H AAA G    +        + N +D  G T LH A 
Sbjct: 121 IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC 180

Query: 755 YCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
              R      L+  GA          +    +TP  +A   G  G+    
Sbjct: 181 DEERVEEAKFLVTQGA------SIYIENKEEKTPLQVAK--GGLGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 6/61 (9%)

Query: 744 VNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGY 803
           V+     + A     +     ++A  +        T      RT    A S GH  I  +
Sbjct: 5   VSNIMICNLAYSGKLDELKERILADKS------LATRTDQDSRTALHWACSAGHTEIVEF 58

Query: 804 L 804
           L
Sbjct: 59  L 59

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 9/92 (9%)

Query: 713 GQGVLHFAAALGYDWAL---EPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 769
            + VLH A  +    +L   +     G +++ +  +G TALH+AA   +   +  L+   
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249

Query: 770 AAPGALSDPTPKYPSGRTPADLASSIGHKGIA 801
           A             +G T  D+A    HK   
Sbjct: 250 A------LVGTVNEAGETALDIARKKHHKECE 275

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 10/132 (7%)

Query: 674 SSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHC-GQGVLHFAAALGYDWALEPT 732
           +      + V+      L            K P    H   +  LH A       +L   
Sbjct: 129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 188

Query: 733 ---TVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPA 789
                   N++ +   G TALH+         +  L+   A+    +       SG TP 
Sbjct: 189 DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN------ESGETPL 242

Query: 790 DLASSIGHKGIA 801
           D+A  + H+   
Sbjct: 243 DIAKRLKHEHCE 254

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score = 56.2 bits (136), Expect = 5e-08
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 917 DEPVHAAATRIQNKFRSWKGRKDFLIIRKQ---IIKIQAYVRGHQVRKNYK 964
           DE +    +  Q   R +  RK +  ++ Q   +  IQ  +R   V +N++
Sbjct: 775 DERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 56.2 bits (136), Expect = 5e-08
 Identities = 24/164 (14%), Positives = 61/164 (37%), Gaps = 14/164 (8%)

Query: 917  DEPVHAAATRIQNKFRSWKGRKDFLI---------IRKQIIKIQAYVRGHQVRKNYKKII 967
            ++ + +  T+     R+ +  +                 I  +Q+++  H+  K  +K  
Sbjct: 759  EQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPP 818

Query: 968  WSVGIMEKIILRWRRRGSGLRGFKSETLTASSSMVATSAKEDDYDFLKEGRKQKEERLQK 1027
                 + ++   +    + LR  K E    + + +  +  +  +  L++  ++  E L+ 
Sbjct: 819  KGQ-EVSELEAIYNSLQTKLRLIKREPF-VAPAGLTPNEIDSTWSALEKAEQEHAEALRI 876

Query: 1028 ALARVKSMVQYPEARDQYRRLLNVVNEIQETKAMALSNAEETAD 1071
             L R K +        +Y R+L  +     TK++ L + E    
Sbjct: 877  ELKRQKKIA---VLLQKYNRILKKLENWATTKSVYLGSNETGDS 917

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 1e-07
 Identities = 83/617 (13%), Positives = 162/617 (26%), Gaps = 205/617 (33%)

Query: 3   DSRRFALGNQLDIEQILIEAQHR-------WL---RPAEIC-----EILR-NYTKF---R 43
           D  +  L  + +I+ I++            W    +  E+      E+LR NY KF    
Sbjct: 40  DMPKSILSKE-EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSP 97

Query: 44  IAPESPHTPPSGSLFLFDRKVL----RYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVL 99
           I  E         +++  R  L    + F K  +  R +     +++A   L+     ++
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPY-LKLRQALLELRPAKNVLI 155

Query: 100 H--------CYYAHGEENENFQRRS----YWMLEEELSHIVLVHYREVKGNRTNFNRAKV 147
                            +   Q +     +W+                     N      
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---------------------NLKNCNS 194

Query: 148 AEGATPYSQENEETIPNSEVEGSQSSGFHPNSYQMPSQTADTSLNSAQASE-YEDA---- 202
            E       E  + +         S   H ++ ++   +    L     S+ YE+     
Sbjct: 195 PETVL----EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 203 ESVYNNQA------------SSRFHSFLDL------QQPVAEKIDAGLADPYYPSSLTNN 244
            +V N +A            ++RF    D            +     L      S L   
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 245 YQGKFSVVPG-ADFISP----------------------AQTDKSRNSNDTGL----TYE 277
              +   +P      +P                         DK     ++ L      E
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 278 PQKNLD----FPSWEDVLQNCSQGVGSQPEALGDIPNQGYDIL-GEPFTNSFGERKEFGS 332
            +K  D    FP                      IP     ++  +   +   +     +
Sbjct: 371 YRKMFDRLSVFP--PSA----------------HIPTILLSLIWFDVIKS---DVMVVVN 409

Query: 333 HLQTRGEWQASRNDSSHLSNWPMDQKVYLDSAH-DLTSQSCEQGAAHDGLLDSLRPPHAH 391
            L             S +   P +  + + S + +L  +   + A H  ++D    P   
Sbjct: 410 KLHKY----------SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 392 PNMENDVHEQLPNAEHGHLLKSDPESSLTIDGKSFYSSAIKQHLIDGSTEGLKKLDSFN- 450
            +      + +P     +                FYS  I  HL   + E  +++  F  
Sbjct: 460 DS-----DDLIPPYLDQY----------------FYSH-IGHHLK--NIEHPERMTLFRM 495

Query: 451 -----RWMSKELGDVKESNMQSSSGAYWETVES-ENGVDDSGVSPQARLDTYMM-----S 499
                R++ +++               W    S  N +          L  Y        
Sbjct: 496 VFLDFRFLEQKI---------RHDSTAWNASGSILNTLQQ--------LKFYKPYICDND 538

Query: 500 PSLSQDQLYSIIDFSPN 516
           P   +  + +I+DF P 
Sbjct: 539 PKYER-LVNAILDFLPK 554

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 2e-07
 Identities = 94/641 (14%), Positives = 175/641 (27%), Gaps = 168/641 (26%)

Query: 280 KNLDFPSWEDVLQNCSQGVGSQPEALGDIPNQGYDILGEPFTNSFGERKEFGSHLQTRGE 339
            N D    +D+ ++    + S+ E   D       I+        G  + F + L ++ E
Sbjct: 31  DNFDCKDVQDMPKS----ILSKEEI--D------HIIMSK-DAVSGTLRLFWT-LLSKQE 76

Query: 340 WQASRNDSSHLS---NWPMD--QKVYLDSAHDLTSQSCEQGAAHDGLLDSLR--PPHAHP 392
               +     L     + M   +      +              D L +  +    +   
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI----EQRDRLYNDNQVFAKYNVS 132

Query: 393 NMENDVHEQLPNAEHGHLLKSDPESSLTIDG-----KS-FYSSAIKQHLIDGSTEGLKKL 446
            ++   + +L  A    LL+  P  ++ IDG     K+         + +          
Sbjct: 133 RLQP--YLKLRQA----LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV---------Q 177

Query: 447 DSFNR---WMSKELGDVKES-----NMQS----SSGAYWETVESENGVDDSGVSPQARLD 494
              +    W++  L +          +Q         +    +  + +     S QA L 
Sbjct: 178 CKMDFKIFWLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 495 TYMMSPSLSQDQLYSIID--FSPN-WAYVSSEVKVLITGR------FLMSQQEAENC--K 543
             + S       L  ++    +   W   +   K+L+T R      FL +          
Sbjct: 236 RLLKSKPYENCLL--VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 544 WSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDV 603
            S      EV   ++    L C     +   +P  V  +N    S + E       I D 
Sbjct: 294 HSMTLTPDEV-KSLLLK-YLDC-----RPQDLPREVLTTNPRRLSIIAES------IRD- 339

Query: 604 DVADNCGDITSENLR-MQFGKLLCLTSVSTPNYDPSNLSD------ISQLNSKIS----S 652
                 G  T +N + +   KL  +   S    +P+          +   ++ I     S
Sbjct: 340 ------GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 653 LLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEK-----------LQVWLVQKAAE 701
           L+      W     +   +      V  KL +  L EK           + + L  K   
Sbjct: 394 LI------WF---DVIKSD---VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 702 GG----------KGPCVLDHCGQGVLH----FAAALGYDWALEPTTVAGVNINFRDVNGW 747
                         P   D       +    F + +G+   L+          FR V  +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHPERMTLFRMV--F 497

Query: 748 TALHWAAYCGRERTVASLIALGAAPGALSDPTP------KY-----PSGRTPADLASSIG 796
               +            +     A  A             Y      +      L ++I 
Sbjct: 498 LDFRFLE--------QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549

Query: 797 H--KGIAGYLAESDLSSALSAISLNKKDGDVAEVTGATAVQ 835
                I   L  S  +  L  I+L  +D  + E      VQ
Sbjct: 550 DFLPKIEENLICSKYTDLLR-IALMAEDEAIFE-EAHKQVQ 588

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 52.6 bits (126), Expect = 4e-07
 Identities = 27/182 (14%), Positives = 50/182 (27%), Gaps = 18/182 (9%)

Query: 635 YDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVW 694
           ++  N  +  QL      L ++    +    +L+       E +   L      E+++  
Sbjct: 7   HNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQL 66

Query: 695 LVQKAAEGGKG-------PCVLDHCGQGVLHFAAALGYDWALEPTTV-----AGVNINFR 742
           L    A   +                + +   AA  G   AL+  T+     +   +   
Sbjct: 67  LCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALD--TLCLLLTSDEIVKVI 124

Query: 743 DVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAG 802
               + A   AA  G    +  L  L                      LA+  GH  +  
Sbjct: 125 QAENYQAFRLAAENGHLHVLNRLCELAPTE----IMAMIQAENYHAFRLAAENGHLHVLN 180

Query: 803 YL 804
            L
Sbjct: 181 RL 182

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 15/102 (14%), Positives = 28/102 (27%), Gaps = 17/102 (16%)

Query: 713 GQGVLHFAAALGYDWALE--------PTTVAGVNINFRDVNGWTALHWAAYCGRERTVAS 764
           G  +L        +  L+        P   A         +    L  A   G +   A 
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 337

Query: 765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE 806
           L+++ +   AL+     Y        +  + G   +     E
Sbjct: 338 LLSIPSVL-ALTKANNYY--------INETGGRLDLRAVALE 370

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 26/110 (23%), Positives = 34/110 (30%), Gaps = 6/110 (5%)

Query: 713 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP 772
               L  A A     A E     G N+N  D  G   LH A   G        +  GA  
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294

Query: 773 GALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKD 822
           GA          GR P  +A    +  I   L  + +  A +A      +
Sbjct: 295 GARD------SEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDE 338

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 49.1 bits (117), Expect = 6e-06
 Identities = 32/171 (18%), Positives = 56/171 (32%), Gaps = 37/171 (21%)

Query: 662 DLMLKLTAEEKFSSEEVKE-----KLVQKLLKEKLQ---------------VWLVQKAAE 701
               K +AE   S    +      K V+     +                 + +++  A 
Sbjct: 98  HGGPKPSAE---SDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFAN 154

Query: 702 GGKGPCVL-----DHCGQGVLHFAAALGYDWALEPTTVA---GVNINFRDVNGWTALHWA 753
           G      L         + VLH A  +    +L         G +++ +  +G TALH+A
Sbjct: 155 GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYA 214

Query: 754 AYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           A   +   +  L+   A  G ++       +G T  D+A    HK     L
Sbjct: 215 ALYNQPDCLKLLLKGRALVGTVN------EAGETALDIARKKHHKECEELL 259

>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A Length = 138

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 509 SIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHT- 567
            I   SP+  + +    V+I G                +FG + V +E++    +R  T 
Sbjct: 7   CIKAISPSEGWTTGGATVIIIGDNFFDG-------LQVVFGTMLVWSELITPHAIRVQTP 59

Query: 568 SSQKVGRVPFYVTCSNRLSCSEVR-EFEYRASHIPDVDVA 606
                G V   ++  ++  C      F Y A + P +D  
Sbjct: 60  PRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYG 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1092
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.98
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.98
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.98
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.96
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.95
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.95
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
2rfa_A	232	Transient receptor potential cation channel subfa	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.92
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.92
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.92
2etb_A	256	Transient receptor potential cation channel subfam	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.92
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.91
2pnn_A	273	Transient receptor potential cation channel subfa	99.91
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.9
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.89
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.88
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.88
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.88
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.88
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.88
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.88
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.87
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.87
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.87
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.87
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.86
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.86
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.85
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.85
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.83
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.83
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.81
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.81
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.81
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.8
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.8
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.79
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.79
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.78
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.76
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.76
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.76
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.76
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.75
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.74
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.72
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.72
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.72
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.68
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.53
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	99.5
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	99.44
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	99.08
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	98.82
2cxk_A	95	Camta1, calmodulin binding transcription activator	98.61
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	98.59
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	98.34
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	97.58
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	97.39
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	97.36
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	97.25
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	97.24
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.21
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	96.56
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.08
3gn4_A	148	Myosin-VI; unconventional myosin, motility, lever	94.8
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	94.75
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	89.06
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	86.04
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	85.64
2l53_B	31	CAM, voltage-gated sodium channel type V alpha iso	84.65
2kxw_B	27	Sodium channel protein type 2 subunit alpha; actio	83.82
2l53_B	31	CAM, voltage-gated sodium channel type V alpha iso	83.13
2kxw_B	27	Sodium channel protein type 2 subunit alpha; actio	82.28
3gn4_A	148	Myosin-VI; unconventional myosin, motility, lever	80.7

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.4e-33  Score=304.76  Aligned_cols=254  Identities=13%  Similarity=0.013  Sum_probs=186.3

Q ss_pred             CCcccChHHHHHHHcCCcHHHHHHHHCCCCCC-CCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCc
Q 001365          534 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRC-HTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDI  612 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin-~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~T  612 (1092)
                      .+..+.||||+||..|+.+++++|++.|++.+ ....+..|.||||+||..|+    +..+++|+..|++++.+|..|.|
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~~~~~~~~g~t   80 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE----ASTVEKLYAAGAGVLVAERGGHT   80 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTC----HHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCCCCC
Confidence            45678999999999999999999999998833 23567789999999999986    55567899999999999999999


Q ss_pred             HHhh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHH
Q 001365          613 TSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLL  687 (1092)
Q Consensus       613 pL~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~  687 (1092)
                      |||+    ++.+++++|+. ++........ .      ......  ......+.++++.+...                 
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~------~~~~~~--~~~~~~~~~~~~~~~~~-----------------  134 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASD-T------YLTQSQ--DCTPDTSHAPAAVDSQP-----------------  134 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------------------------
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHH-H------Hhhccc--ccCcchhcchhhhcccc-----------------
Confidence            9995    77889988865 4443322110 0      000000  00001222333322221                 


Q ss_pred             HhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCC-CccHHHHHHHcCCHHHHHHHH
Q 001365          688 KEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVN-GWTALHWAAYCGRERTVASLI  766 (1092)
Q Consensus       688 k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~-G~TpLH~Aa~~G~~eiV~~LL  766 (1092)
                        .....+...+...+++++.+|..|.||||+|+..|+.++|++|+++|++++.++.. |+||||+||..|+.++|++||
T Consensus       135 --~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  212 (282)
T 1oy3_D          135 --NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL  212 (282)
T ss_dssp             -----------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             --ccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHH
Confidence              11112444556678899999999999999999999999999999999999999865 999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          767 ALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       767 e~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      ++|++++.      +|..|+||||+|+..|+.+++++|+++|     ++++.+|..|.+|...+
T Consensus       213 ~~gad~~~------~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~tpl~~a  265 (282)
T 1oy3_D          213 KAGADPTA------RMYGGRTPLGSALLRPNPILARLLRAHG-----APEPEDGGDKLSPCSSS  265 (282)
T ss_dssp             HTTCCTTC------CCTTSCCHHHHHHTSSCHHHHHHHHHTT-----CCCCCCC----------
T ss_pred             HcCCCCcc------cccCCCCHHHHHHHcCCcHHHHHHHHcC-----CCcCcCCCccccccccc
Confidence            99999888      7899999999999999999999999999     78999999997764433

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-32  Score=295.34  Aligned_cols=236  Identities=15%  Similarity=0.090  Sum_probs=194.5

Q ss_pred             cccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHh
Q 001365          536 QQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSE  615 (1092)
Q Consensus       536 ~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~  615 (1092)
                      ..+.||||+||..|+.+++++|++.|++++  ..+..|.||||+||..|+    +..+++|+..|++++..|..|.||||
T Consensus        37 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~L~  110 (285)
T 1wdy_A           37 EGGWTPLHNAVQMSREDIVELLLRHGADPV--LRKKNGATPFLLAAIAGS----VKLLKLFLSKGADVNECDFYGFTAFM  110 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHHTC----HHHHHHHHHTTCCTTCBCTTCCBHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCCccCcccCCHHH
Confidence            346788888888888888888888888866  556668888888888875    44456788888888888888888888


Q ss_pred             h----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhh
Q 001365          616 N----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEK  690 (1092)
Q Consensus       616 ~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~  690 (1092)
                      .    ++.+++++|.. +++++.......      .      ....+..|.++|+.++..+...                
T Consensus       111 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~------~------~~~~~~~g~t~L~~A~~~~~~~----------------  162 (285)
T 1wdy_A          111 EAAVYGKVKALKFLYKRGANVNLRRKTKE------D------QERLRKGGATALMDAAEKGHVE----------------  162 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCCCCH------H------HHHTTCCCCCHHHHHHHHTCHH----------------
T ss_pred             HHHHhCCHHHHHHHHHhCCCcccccccHH------H------HHhhccCCCcHHHHHHHcCCHH----------------
Confidence            5    66677777644 666554332100      0      0111367889999988766542                


Q ss_pred             hHHHHHHHHHhC-CCCCCcccCCCCcHHHHHHHcCC----HhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHH
Q 001365          691 LQVWLVQKAAEG-GKGPCVLDHCGQGVLHFAAALGY----DWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASL  765 (1092)
Q Consensus       691 l~~~LvklLle~-GadvN~~D~~G~TpLH~AA~~G~----~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~L  765 (1092)
                          +++.|++. |++++..|..|.||||+|+..|+    .+++++|+++|++++.+|..|+||||+|+..|+.++|++|
T Consensus       163 ----~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  238 (285)
T 1wdy_A          163 ----VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL  238 (285)
T ss_dssp             ----HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ----HHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence                67778876 99999999999999999999999    9999999999999999999999999999999999999999


Q ss_pred             HH-cCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccC
Q 001365          766 IA-LGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNK  820 (1092)
Q Consensus       766 Le-~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD  820 (1092)
                      ++ .|++++.      +|..|.||||+|+..|+.+++++|+++|     ++++++|
T Consensus       239 l~~~g~~~~~------~~~~g~t~l~~A~~~~~~~i~~~Ll~~G-----a~~~~~d  283 (285)
T 1wdy_A          239 LEQEHIEIND------TDSDGKTALLLAVELKLKKIAELLCKRG-----ASTDCGD  283 (285)
T ss_dssp             HHSSSCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHHS-----SCSCCSS
T ss_pred             HhccCCCccc------cCCCCCcHHHHHHHcCcHHHHHHHHHcC-----CCCCccc
Confidence            99 8999887      7899999999999999999999999999     6677766

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.3e-32  Score=294.06  Aligned_cols=252  Identities=17%  Similarity=0.122  Sum_probs=216.4

Q ss_pred             ccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh
Q 001365          537 QEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN  616 (1092)
Q Consensus       537 ~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~  616 (1092)
                      ++.|+||+||..|+++++++|++.|++++.. .+..|.||||+||..|+    ...+++|++.|++++..|..|.||||.
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~   78 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSR----EDIVELLLRHGADPVLRKKNGATPFLL   78 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccc-cCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            4578999999999999999999999987743 25679999999999986    455578999999999999999999995


Q ss_pred             ----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhh
Q 001365          617 ----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKL  691 (1092)
Q Consensus       617 ----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l  691 (1092)
                          ++.+++++|+. |++++..                      +..|++||+.++..+...                 
T Consensus        79 A~~~~~~~~v~~Ll~~g~~~~~~----------------------~~~g~t~L~~A~~~~~~~-----------------  119 (285)
T 1wdy_A           79 AAIAGSVKLLKLFLSKGADVNEC----------------------DFYGFTAFMEAAVYGKVK-----------------  119 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCB----------------------CTTCCBHHHHHHHTTCHH-----------------
T ss_pred             HHHcCCHHHHHHHHHcCCCCCcc----------------------CcccCCHHHHHHHhCCHH-----------------
Confidence                67788888754 6655432                      357899999998876542                 


Q ss_pred             HHHHHHHHHhCCCCCCcc----------cCCCCcHHHHHHHcCCHhHHHHHHHC-CCCccccCCCCccHHHHHHHcCC--
Q 001365          692 QVWLVQKAAEGGKGPCVL----------DHCGQGVLHFAAALGYDWALEPTTVA-GVNINFRDVNGWTALHWAAYCGR--  758 (1092)
Q Consensus       692 ~~~LvklLle~GadvN~~----------D~~G~TpLH~AA~~G~~~iVk~LL~~-Gadin~~D~~G~TpLH~Aa~~G~--  758 (1092)
                         ++++|++.|++++..          +..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+  
T Consensus       120 ---~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  196 (285)
T 1wdy_A          120 ---ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS  196 (285)
T ss_dssp             ---HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTT
T ss_pred             ---HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccc
Confidence               788899999999987          78899999999999999999999998 99999999999999999999999  


Q ss_pred             --HHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCcccCcccCCCCCcHHHHh-h---
Q 001365          759 --ERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE-SDLSSALSAISLNKKDGDVAEVTG-A---  831 (1092)
Q Consensus       759 --~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe-~Ga~~h~adlnlkD~~G~ta~iaa-~---  831 (1092)
                        .+++++|+++|++++.      +|..|.||||+|+..|+.+++++|++ .|     ++++.+|..|.|+...+ .   
T Consensus       197 ~~~~i~~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g-----~~~~~~~~~g~t~l~~A~~~~~  265 (285)
T 1wdy_A          197 DVEAITHLLLDHGADVNV------RGERGKTPLILAVEKKHLGLVQRLLEQEH-----IEINDTDSDGKTALLLAVELKL  265 (285)
T ss_dssp             THHHHHHHHHHTTCCSSC------CCTTSCCHHHHHHHTTCHHHHHHHHHSSS-----CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             hHHHHHHHHHHcCCCCCC------cCCCCCcHHHHHHHcCCHHHHHHHHhccC-----CCccccCCCCCcHHHHHHHcCc
Confidence              9999999999999887      77899999999999999999999999 67     78999999997774433 2   


Q ss_pred             -hhhccccccCCCCCC
Q 001365          832 -TAVQTVPQRCPTPVS  846 (1092)
Q Consensus       832 -~~v~~l~~~~as~~s  846 (1092)
                       ..++.|.+.++.+..
T Consensus       266 ~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          266 KKIAELLCKRGASTDC  281 (285)
T ss_dssp             HHHHHHHHHHSSCSCC
T ss_pred             HHHHHHHHHcCCCCCc
Confidence             455666666666553

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=6.9e-33  Score=298.43  Aligned_cols=222  Identities=16%  Similarity=0.104  Sum_probs=167.7

Q ss_pred             CCcccChHHHHHHHcC-------------CcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCC
Q 001365          534 MSQQEAENCKWSCMFG-------------EIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHI  600 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG-------------~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~G  600 (1092)
                      .+..+.||||+||..|             +.++++.|++.|++++. ..+..|.||||+||..|+    +..+++|++.|
T Consensus         6 ~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~-~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g   80 (253)
T 1yyh_A            6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHN-QTDRTGETALHLAARYSR----SDAAKRLLEAS   80 (253)
T ss_dssp             -----------------------------------------------CCCTTSCCHHHHHHHTTC----HHHHHHHHHTT
T ss_pred             CCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccc-ccCCCCCcHHHHHHHcCC----HHHHHHHHHcC
Confidence            4567899999999988             89999999999998652 346789999999999986    45557899999


Q ss_pred             CCcccccCCCCcHHhh----hHHHHHHHHhc-CC-CCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCC
Q 001365          601 PDVDVADNCGDITSEN----LRMQFGKLLCL-TS-VSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFS  674 (1092)
Q Consensus       601 advna~D~~G~TpL~~----~~~~lvkLLl~-ga-dv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s  674 (1092)
                      ++++..|..|.||||.    ++.+++++|+. ++ +++..                      +..|++|||.|+..+...
T Consensus        81 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----------------------~~~g~t~L~~A~~~~~~~  138 (253)
T 1yyh_A           81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR----------------------MHDGTTPLILAARLAVEG  138 (253)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCC----------------------CTTCCCHHHHHHHHTCSS
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc----------------------CCCCCcHHHHHHHcChHH
Confidence            9999999999999995    66788888865 43 33222                      357999999999887765


Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHH
Q 001365          675 SEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA  754 (1092)
Q Consensus       675 ~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa  754 (1092)
                                          ++++|++.|+++|.+|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+
T Consensus       139 --------------------~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~  198 (253)
T 1yyh_A          139 --------------------MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA  198 (253)
T ss_dssp             --------------------HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             --------------------HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence                                788899999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          755 YCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       755 ~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      ..|+.++|++|+++|++++.      +|..|+||||+|+.+|+.+|+++|....
T Consensus       199 ~~~~~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          199 REGSYETAKVLLDHFANRDI------TDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             HHTCHHHHHHHHHTTCCTTC------CCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             HCCCHHHHHHHHHcCCCccc------cccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            99999999999999999887      7899999999999999999999999754

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3e-32  Score=315.36  Aligned_cols=291  Identities=13%  Similarity=0.087  Sum_probs=191.2

Q ss_pred             ccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh
Q 001365          537 QEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN  616 (1092)
Q Consensus       537 ~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~  616 (1092)
                      .+.||||+||..|+.+++++|++.|++++  ..+..|.||||+||..|+    +..+++|++.|++++..+..|.||||.
T Consensus        46 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~~~~~~~~g~t~L~~  119 (437)
T 1n11_A           46 KVETPLHMAARAGHTEVAKYLLQNKAKVN--AKAKDDQTPLHCAARIGH----TNMVKLLLENNANPNLATTAGHTPLHI  119 (437)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTSCCHHHHHHHHTC----HHHHHHHHHHTCCTTCCCTTCCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCCHHHHHHHCCC----HHHHHHHHhCCCCCCCCCCCCCcHHHH
Confidence            45567777777777777777777777655  445557777777777764    333456677777777777777777764


Q ss_pred             ----hHHHHHHHHhc-CCCCCCCCCCCCchhh--------HHHHHHHhh----hhccCCCcchHHHHhhhhcCCChHH--
Q 001365          617 ----LRMQFGKLLCL-TSVSTPNYDPSNLSDI--------SQLNSKISS----LLKDENDDWDLMLKLTAEEKFSSEE--  677 (1092)
Q Consensus       617 ----~~~~lvkLLl~-gadv~~~~~~~~~~~~--------~~ll~~I~~----Ll~~d~~g~t~L~~a~~~~~~s~~~--  677 (1092)
                          ++.+++++|+. +++...... .+...+        .+++..+..    ....+..|.|||+.|+..+......  
T Consensus       120 A~~~g~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  198 (437)
T 1n11_A          120 AAREGHVETVLALLEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL  198 (437)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCcCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence                55555555543 444332221 111111        111111111    1122456777777777655433211  


Q ss_pred             ------------HHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCC
Q 001365          678 ------------VKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVN  745 (1092)
Q Consensus       678 ------------~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~  745 (1092)
                                  .....++.++..+..+ +++.|++.|+++|..+..|.||||+|+..|+.++|++|+++|++++.+|..
T Consensus       199 l~~g~~~~~~~~~g~t~L~~A~~~~~~~-~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  277 (437)
T 1n11_A          199 LPRGGSPHSPAWNGYTPLHIAAKQNQVE-VARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS  277 (437)
T ss_dssp             GGGTCCSCCCCTTCCCHHHHHHHTTCHH-HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             HhCCCCCCCcCCCCCCHHHHHHHcCCHH-HHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCC
Confidence                        0112355555544433 677788888888888888888888888888888888888888888888888


Q ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCc
Q 001365          746 GWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDV  825 (1092)
Q Consensus       746 G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~t  825 (1092)
                      |+||||+|+..|+.+++++|+++|++++.      +|..|+||||+|+..|+.++|++|+++|     ++++.+|..|.|
T Consensus       278 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----ad~n~~~~~g~t  346 (437)
T 1n11_A          278 GLTPLHLVAQEGHVPVADVLIKHGVMVDA------TTRMGYTPLHVASHYGNIKLVKFLLQHQ-----ADVNAKTKLGYS  346 (437)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTC------CCSSCCCHHHHHHHSSCSHHHHHHHHTT-----CCTTCCCTTSCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCccCCC------CCCCCCCHHHHHHHcCcHHHHHHHHhcC-----CCCCCCCCCCCC
Confidence            88888888888888888888888888776      6778888888888888888888888887     678888888866


Q ss_pred             HHHH-hh----hhhccccccCCCCCC
Q 001365          826 AEVT-GA----TAVQTVPQRCPTPVS  846 (1092)
Q Consensus       826 a~ia-a~----~~v~~l~~~~as~~s  846 (1092)
                      +... ..    ..++.|.+..+.+..
T Consensus       347 ~L~~A~~~g~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          347 PLHQAAQQGHTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             HHHHHHHCChHHHHHHHHHCcCCCCC
Confidence            6333 22    445556666655543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.9e-32  Score=313.54  Aligned_cols=251  Identities=17%  Similarity=0.128  Sum_probs=173.6

Q ss_pred             cChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh-
Q 001365          538 EAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN-  616 (1092)
Q Consensus       538 ~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~-  616 (1092)
                      +.||||+||..|+.++++.|++.|++.+  ..+..|.||||+||..|+    +..+++|+..|++++..+..|.||||. 
T Consensus       113 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  186 (437)
T 1n11_A          113 GHTPLHIAAREGHVETVLALLEKEASQA--CMTKKGFTPLHVAAKYGK----VRVAELLLERDAHPNAAGKNGLTPLHVA  186 (437)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCSSCCCHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCc--CCCCCCCCHHHHHHHcCC----HHHHHHHHhCCCCCCCCCCCCCCHHHHH
Confidence            4455555555555555555555555433  233345555555555543    233344555555555555555555553 


Q ss_pred             ---hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHH--------------H
Q 001365          617 ---LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEE--------------V  678 (1092)
Q Consensus       617 ---~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~--------------~  678 (1092)
                         ++.+++++|+. +++++..                      +..+++||+.++..+......              .
T Consensus       187 ~~~~~~~~v~~Ll~~g~~~~~~----------------------~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  244 (437)
T 1n11_A          187 VHHNNLDIVKLLLPRGGSPHSP----------------------AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ  244 (437)
T ss_dssp             HHTTCHHHHHHHGGGTCCSCCC----------------------CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHcCCHHHHHHHHhCCCCCCCc----------------------CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence               34444444432 3333222                      223445555554433322110              0


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCC
Q 001365          679 KEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR  758 (1092)
Q Consensus       679 ~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~  758 (1092)
                      ..+.|+.++..+..+ ++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+||..|+
T Consensus       245 g~t~L~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  323 (437)
T 1n11_A          245 GVTPLHLAAQEGHAE-MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN  323 (437)
T ss_dssp             CCCHHHHHHHTTCHH-HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSC
T ss_pred             CCCHHHHHHHCCCHH-HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCc
Confidence            012234444433332 7889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHH
Q 001365          759 ERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEV  828 (1092)
Q Consensus       759 ~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~i  828 (1092)
                      .++|++|+++|+++|.      +|..|+||||+|+..|+.++|++|+++|     ++++.+|.+|.|+..
T Consensus       324 ~~~v~~Ll~~gad~n~------~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-----a~~~~~~~~g~t~l~  382 (437)
T 1n11_A          324 IKLVKFLLQHQADVNA------KTKLGYSPLHQAAQQGHTDIVTLLLKNG-----ASPNEVSSDGTTPLA  382 (437)
T ss_dssp             SHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCSCCCCSSSCCHHH
T ss_pred             HHHHHHHHhcCCCCCC------CCCCCCCHHHHHHHCChHHHHHHHHHCc-----CCCCCCCCCCCCHHH
Confidence            9999999999999887      7899999999999999999999999999     789999999977643

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=8.5e-33  Score=292.21  Aligned_cols=225  Identities=18%  Similarity=0.092  Sum_probs=190.1

Q ss_pred             CCcccChHHHHHHHcCCcHHHHHHHH----CCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCC
Q 001365          534 MSQQEAENCKWSCMFGEIEVPAEIVA----GGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNC  609 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~veVv~~LL~----~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~  609 (1092)
                      .+..+.||||+||..|+++++++|++    .|++++  ..+..|.||||+||..|+    +..+++|++.|++++..|..
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~   78 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD--IYNNLRQTPLHLAVITTL----PSVVRLLVTAGASPMALDRH   78 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTT
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--cccccCCCHHHHHHHcCC----HHHHHHHHHcCCCccccCCC
Confidence            34568899999999999999999987    788876  567779999999999986    45557899999999999999


Q ss_pred             CCcHHhh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHH
Q 001365          610 GDITSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQ  684 (1092)
Q Consensus       610 G~TpL~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~  684 (1092)
                      |.||||.    ++.+++++|+. ++.....                  +...+..|++||+.++..+...          
T Consensus        79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~------------------~~~~~~~g~t~L~~A~~~~~~~----------  130 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRALLDSAAPGTLD------------------LEARNYDGLTALHVAVNTECQE----------  130 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCC------------------TTCCCTTSCCHHHHHHHHTCHH----------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCcccc------------------ccccCcCCCcHHHHHHHcCCHH----------
Confidence            9999995    66788877754 4421100                  0112367899999988766532          


Q ss_pred             HHHHhhhHHHHHHHHHhCCCCCCccc-CCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHH
Q 001365          685 KLLKEKLQVWLVQKAAEGGKGPCVLD-HCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVA  763 (1092)
Q Consensus       685 ~a~k~~l~~~LvklLle~GadvN~~D-~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~  763 (1092)
                                ++++|++.|++++..+ ..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|+
T Consensus       131 ----------~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  200 (241)
T 1k1a_A          131 ----------TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR  200 (241)
T ss_dssp             ----------HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred             ----------HHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence                      7888999999999999 88999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          764 SLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       764 ~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      +|+++|++++.      +|..|.||||+|+..|+.++++.|++.+
T Consensus       201 ~Ll~~ga~~~~------~~~~g~tpl~~A~~~~~~~i~~~l~~~~  239 (241)
T 1k1a_A          201 TLVRSGADSSL------KNCHNDTPLMVARSRRVIDILRGKATRP  239 (241)
T ss_dssp             HHHHTTCCTTC------CCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred             HHHhcCCCCCC------cCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence            99999999887      7899999999999999999999999876

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5.3e-32  Score=300.62  Aligned_cols=260  Identities=20%  Similarity=0.090  Sum_probs=205.2

Q ss_pred             CcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHH
Q 001365          535 SQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITS  614 (1092)
Q Consensus       535 ~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL  614 (1092)
                      +..+.||||+||..|+.+++++|++.|++++  ..+..|.||||+||..|+    +..+++|++.|++++..|..|.|||
T Consensus        55 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~g~----~~iv~~Ll~~g~~~~~~~~~g~t~L  128 (351)
T 3utm_A           55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVH--AKDKGGLVPLHNACSYGH----YEVTELLLKHGACVNAMDLWQFTPL  128 (351)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCcHHHHHHHCCC----HHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            4557899999999999999999999999977  566779999999999986    4555789999999999999999999


Q ss_pred             hh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChH--HHHHHHHHHHH
Q 001365          615 EN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSE--EVKEKLVQKLL  687 (1092)
Q Consensus       615 ~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~--~~~~~lL~~a~  687 (1092)
                      |+    ++.+++++|+. |++.+...                      ..+.++++.+...+.....  ......+..++
T Consensus       129 ~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------------~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  186 (351)
T 3utm_A          129 HEAASKNRVEVCSLLLSHGADPTLVN----------------------CHGKSAVDMAPTPELRERLTYEFKGHSLLQAA  186 (351)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCC----------------------TTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccc----------------------CCCCcchHHHhhhhhHHHHHhhhcccHHHHHH
Confidence            95    67788888754 66655433                      3555666655432211110  01111222333


Q ss_pred             HhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHc---CCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHH
Q 001365          688 KEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAAL---GYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVAS  764 (1092)
Q Consensus       688 k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~---G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~  764 (1092)
                      ...... .+..++..+......+..|.||||+|+..   +..+++++|+++|+++|.+|..|+||||+||..|+.++|++
T Consensus       187 ~~~~~~-~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~  265 (351)
T 3utm_A          187 READLA-KVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEV  265 (351)
T ss_dssp             HTTCHH-HHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HhccHH-HHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            333333 34445555555555788999999999999   55899999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHhhhhh
Q 001365          765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGATAV  834 (1092)
Q Consensus       765 LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa~~~v  834 (1092)
                      |+++|+++|.      +|..|+||||+|+..|+.+++++|+++|     ++++++|..|.|+...+...+
T Consensus       266 Ll~~ga~~n~------~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-----ad~~~~~~~g~tal~~a~~~~  324 (351)
T 3utm_A          266 LHKHGAKMNA------LDSLGQTALHRAALAGHLQTCRLLLSYG-----SDPSIISLQGFTAAQMGNEAV  324 (351)
T ss_dssp             HHHTTCCTTC------CCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHSCHHH
T ss_pred             HHHCCCCCCC------cCCCCCCHHHHHHHcCcHHHHHHHHHcC-----CCCCCcCCCCCChhhhhhHHH
Confidence            9999999888      7899999999999999999999999999     789999999977755444333

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=301.38  Aligned_cols=216  Identities=14%  Similarity=0.052  Sum_probs=180.5

Q ss_pred             CCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcH
Q 001365          534 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDIT  613 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~Tp  613 (1092)
                      .+..+.||||+||..|+.+++++|++.|++++  ..+..|.||||+||..|+    +..+++|++.|++++..|..|.||
T Consensus        55 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~~~~~~~~g~t~  128 (285)
T 3d9h_A           55 DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN--IITADHVSPLHEACLGGH----LSCVKILLKHGAQVNGVTADWHTP  128 (285)
T ss_dssp             SSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC--EECTTCCCHHHHHHHTTC----HHHHHHHHHTTCCSSCCCTTCCCH
T ss_pred             CCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHCCc----HHHHHHHHHCCCCCCCCCCCCCCH
Confidence            45567899999999999999999999998876  556679999999999885    445578899999999999999999


Q ss_pred             Hhh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHH
Q 001365          614 SEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLK  688 (1092)
Q Consensus       614 L~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k  688 (1092)
                      ||.    ++.+++++|+. +++++..                       ..|+|||+.|+..+...              
T Consensus       129 L~~A~~~~~~~~v~~Ll~~g~~~~~~-----------------------~~g~t~L~~A~~~g~~~--------------  171 (285)
T 3d9h_A          129 LFNACVSGSWDCVNLLLQHGASVQPE-----------------------SDLASPIHEAARRGHVE--------------  171 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSSCS-----------------------CTTSCHHHHHHHHTCHH--------------
T ss_pred             HHHHHHcCHHHHHHHHHHCCCCCCCC-----------------------CCCCCHHHHHHHcCCHH--------------
Confidence            985    66777777754 5544321                       35788888888766542              


Q ss_pred             hhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHc
Q 001365          689 EKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL  768 (1092)
Q Consensus       689 ~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~  768 (1092)
                            ++++|++.|++++.+|..|.||||+|+..|+.++|++|+++|++++. |..|+||||+|+..|+.++|++|+++
T Consensus       172 ------~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~  244 (285)
T 3d9h_A          172 ------CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDF  244 (285)
T ss_dssp             ------HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ------HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence                  77888889999999999999999999999999999999999999984 88899999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 001365          769 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAES  807 (1092)
Q Consensus       769 GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~  807 (1092)
                      |++++.      +|..|+||||+|+  ++.+++++|+++
T Consensus       245 gad~~~------~d~~g~t~l~~A~--~~~~~~~~Ll~~  275 (285)
T 3d9h_A          245 GADTQA------KNAEGKRPVELVP--PESPLAQLFLER  275 (285)
T ss_dssp             TCCTTC------CCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred             CCCCCC------cCCCCCCHHHHhc--CccHHHHHHHHh
Confidence            998877      7789999999998  456889999987

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.2e-31  Score=283.49  Aligned_cols=219  Identities=19%  Similarity=0.146  Sum_probs=192.9

Q ss_pred             CCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcH
Q 001365          534 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDIT  613 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~Tp  613 (1092)
                      .+..+.||||+||..|+.+++++|++.|++++  ..+..|.||||+||.+|+    +..+++|++.|++++..+..|.||
T Consensus         7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~   80 (237)
T 3b7b_A            7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANID--TCSEDQRTPLMEAAENNH----LEAVKYLIKAGALVDPKDAEGSTC   80 (237)
T ss_dssp             SSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTC----HHHHHHHHTTTCCCCCCCTTSCCH
T ss_pred             ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC--ccCCCCCCHHHHHHHhCC----HHHHHHHHhCCCCCCCCCCCCCcH
Confidence            45668899999999999999999999999977  556679999999999986    555678999999999999999999


Q ss_pred             Hhh----hHHHHHHHHhcCC--CCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHH
Q 001365          614 SEN----LRMQFGKLLCLTS--VSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLL  687 (1092)
Q Consensus       614 L~~----~~~~lvkLLl~ga--dv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~  687 (1092)
                      ||.    ++.+++++|+...  +++..                      +..|++||+.++..+...             
T Consensus        81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~----------------------~~~g~t~L~~A~~~~~~~-------------  125 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQYLLSNGQMDVNCQ----------------------DDGGWTPMIWATEYKHVD-------------  125 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCCTTCC----------------------CTTSCCHHHHHHHTTCHH-------------
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcccC----------------------CCCCCCHHHHHHHcCCHH-------------
Confidence            995    6778888886633  33222                      257899999998766542             


Q ss_pred             HhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHH
Q 001365          688 KEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIA  767 (1092)
Q Consensus       688 k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe  767 (1092)
                             ++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|++
T Consensus       126 -------~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  198 (237)
T 3b7b_A          126 -------LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS  198 (237)
T ss_dssp             -------HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             -------HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH
Confidence                   7888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 001365          768 LGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE  806 (1092)
Q Consensus       768 ~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe  806 (1092)
                      +|++++.      +|..|.||||+|+.+|+...+..|++
T Consensus       199 ~gad~~~------~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          199 RDSDVTL------KNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             TTCCTTC------CCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             cCCCCCc------cCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999887      78999999999999999876666654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2e-31  Score=298.25  Aligned_cols=243  Identities=14%  Similarity=0.062  Sum_probs=156.3

Q ss_pred             cChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCC-----------------
Q 001365          538 EAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHI-----------------  600 (1092)
Q Consensus       538 ~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~G-----------------  600 (1092)
                      +.|+||.||..|++++|++||+.|+++|.... ..|+||||+||.+|+  .+++  ++|+++|                 
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~-~~g~TpLh~A~~~g~--~~iv--~~Ll~~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE-EGGWTPLHNAVQMSR--EDIV--ELLLRHGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-TTCCCHHHHHHHTTC--HHHH--HHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCccCC-CCCcCHHHHHHHcCC--HHHH--HHHHHcCCchhhhccCCCchhHHH
Confidence            45666666666666666666666666665332 236666666666664  3333  4555554                 


Q ss_pred             ----------------CCcccccCCCCcHHhh----hHHHHHHHH-hcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCC
Q 001365          601 ----------------PDVDVADNCGDITSEN----LRMQFGKLL-CLTSVSTPNYDPSNLSDISQLNSKISSLLKDEND  659 (1092)
Q Consensus       601 ----------------advna~D~~G~TpL~~----~~~~lvkLL-l~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~  659 (1092)
                                      ++++..|..|.||+|.    ++.+++++| ..|++++.........            ...+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~------------~~~~~~  167 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ------------ERLRKG  167 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----------------CTTC
T ss_pred             HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccccc------------ccccCC
Confidence                            4567889999999985    666777776 4577776543311110            011246


Q ss_pred             cchHHHHhhhhcCCChHHHH----------------HHHHHHHHH--hhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHH
Q 001365          660 DWDLMLKLTAEEKFSSEEVK----------------EKLVQKLLK--EKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAA  721 (1092)
Q Consensus       660 g~t~L~~a~~~~~~s~~~~~----------------~~lL~~a~k--~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA  721 (1092)
                      |+||||.|+..++......-                ..+++.+..  ....+.++++|+++|+++|.+|..|+||||+||
T Consensus       168 g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~  247 (337)
T 4g8k_A          168 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV  247 (337)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            67777777666554321100                001111111  111233667777888888888888888888888


Q ss_pred             HcCCHhHHHHHHHC-CCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHH
Q 001365          722 ALGYDWALEPTTVA-GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI  800 (1092)
Q Consensus       722 ~~G~~~iVk~LL~~-Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~ei  800 (1092)
                      ..|+.++|+.|+.. |+++|.+|..|+||||+||..|+.++|++||++||++|.           .||||+|+.+|+.++
T Consensus       248 ~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~-----------~~~L~~A~~~~~~~i  316 (337)
T 4g8k_A          248 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC-----------GDLVMTARRNYDHSL  316 (337)
T ss_dssp             HTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT-----------CCHHHHHHHTTCHHH
T ss_pred             HhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-----------CCHHHHHHHcCCHHH
Confidence            88888888877764 778888888888888888888888888888888877654           358888888888888


Q ss_pred             HHHHHHcC
Q 001365          801 AGYLAESD  808 (1092)
Q Consensus       801 v~~LLe~G  808 (1092)
                      |++||++|
T Consensus       317 v~~Ll~~G  324 (337)
T 4g8k_A          317 VKVLLSHG  324 (337)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHCc
Confidence            88888877

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.5e-31  Score=297.45  Aligned_cols=232  Identities=15%  Similarity=0.046  Sum_probs=159.0

Q ss_pred             CCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccC-CCCcHHhh----hHHHHHHHHh-cCCCCCCCCCCCCchhhHH
Q 001365          572 VGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADN-CGDITSEN----LRMQFGKLLC-LTSVSTPNYDPSNLSDISQ  645 (1092)
Q Consensus       572 ~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~-~G~TpL~~----~~~~lvkLLl-~gadv~~~~~~~~~~~~~~  645 (1092)
                      .|.||||.||.+|+    +..+++|++.|+++|.++. .|.||||+    ++.+++++|+ .|++++.............
T Consensus        24 ~~~t~L~~Av~~g~----~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           24 EDNHLLIKAVQNED----VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHHHHTTC----HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCC----HHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence            48899999999986    5556789999999999875 59999995    7889998885 4787776554222111111


Q ss_pred             H-------HH----HHhhhhccCCCcchHHHHhhhhcCCChHHH------------------------HHHHHHHHHHhh
Q 001365          646 L-------NS----KISSLLKDENDDWDLMLKLTAEEKFSSEEV------------------------KEKLVQKLLKEK  690 (1092)
Q Consensus       646 l-------l~----~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~------------------------~~~lL~~a~k~~  690 (1092)
                      .       ..    ....+...+..|+|||+.++..+.......                        ..+.|+.++..+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g  179 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  179 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred             HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence            0       01    111222346789999999987665432111                        012456665555


Q ss_pred             hHHHHHHHHH-hCCCCCCcccCCCCcHHHHHHHcCC----HhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHH
Q 001365          691 LQVWLVQKAA-EGGKGPCVLDHCGQGVLHFAAALGY----DWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASL  765 (1092)
Q Consensus       691 l~~~LvklLl-e~GadvN~~D~~G~TpLH~AA~~G~----~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~L  765 (1092)
                      ..+ ++++|+ +.|+++|.+|..|.|+||+++..+.    ..++++|+++|+++|.+|..|+||||+||..|+.++|++|
T Consensus       180 ~~~-~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~L  258 (337)
T 4g8k_A          180 HVE-VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL  258 (337)
T ss_dssp             CHH-HHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHH
T ss_pred             CHH-HHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHH
Confidence            444 566666 3577777777777787777766543    3467777777888877777788888888888888887777


Q ss_pred             HHc-CCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCccc
Q 001365          766 IAL-GAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLN  819 (1092)
Q Consensus       766 Le~-GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlk  819 (1092)
                      ++. |+++|.      +|..|+||||+|+..|+.++|++|+++|     ++++.+
T Consensus       259 l~~~~~~vn~------~d~~G~TpL~~A~~~g~~~iv~~Ll~~G-----Ad~n~~  302 (337)
T 4g8k_A          259 LEQEHIEIND------TDSDGKTALLLAVELKLKKIAELLCKRG-----ASTDCG  302 (337)
T ss_dssp             HTSTTCCTTC------BCTTSCBHHHHHHHTTCHHHHHHHHTTS-----CSSTTC
T ss_pred             HHhcCCcccC------cCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCC
Confidence            764 677666      6677788888888888888888888777     455544

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.4e-33  Score=304.88  Aligned_cols=223  Identities=17%  Similarity=0.075  Sum_probs=156.7

Q ss_pred             CcccChHHHHHHHcCCcHHHHHHHHCCCCCC------CCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccC
Q 001365          535 SQQEAENCKWSCMFGEIEVPAEIVAGGVLRC------HTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADN  608 (1092)
Q Consensus       535 ~~~~~TpLH~A~~fG~veVv~~LL~~Gadin------~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~  608 (1092)
                      ++.+.++|+.||..|++++|++||+.|++..      ....+..|.||||+|+..+.  . ...+++|+..|+++|.+|.
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~--~-~~~v~~Ll~~Gadvn~~d~   84 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAP--A-QKRLAKVPASGLGVNVTSQ   84 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC-------------------------------------------CCCCTTCCCT
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCC--H-HHHHHHHHHCCCCCCCcCC
Confidence            4567899999999999999999999987532      22346679999999997763  1 2234688999999999999


Q ss_pred             CCCcHHhh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHH
Q 001365          609 CGDITSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLV  683 (1092)
Q Consensus       609 ~G~TpL~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL  683 (1092)
                      +|.||||+    ++.+++++|+. +++++...                      ..|.+|++.++..+...         
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~----------------------~~g~t~l~~a~~~~~~~---------  133 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAGARN----------------------ADQAVPLHLACQQGHFQ---------  133 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCC----------------------TTCCCHHHHHHHHTCHH---------
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccC----------------------CCCCCccccccccChHH---------
Confidence            99999995    66677777754 66554432                      57888998887755432         


Q ss_pred             HHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHH
Q 001365          684 QKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVA  763 (1092)
Q Consensus       684 ~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~  763 (1092)
                                 ++++|++.|+++|.+|..|+||||+||..|+.++|++||++|+++|.+|..|+||||+||..|+.++|+
T Consensus       134 -----------~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~  202 (269)
T 4b93_B          134 -----------VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVE  202 (269)
T ss_dssp             -----------HHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             -----------HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHH
Confidence                       677888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCc-HHHHHHHHHcC
Q 001365          764 SLIALGAAPGALSDPTPKYPSGRTPADLASSIGH-KGIAGYLAESD  808 (1092)
Q Consensus       764 ~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~-~eiv~~LLe~G  808 (1092)
                      +||++||++++      +|..|+||||+|+.+|+ .+++++|...+
T Consensus       203 ~Ll~~Gad~~~------~d~~G~TpL~~A~~~~~i~~lL~~l~~~~  242 (269)
T 4b93_B          203 LLLLHGASVQV------LNKRQRTAVDCAEQNSKIMELLQVVPSCV  242 (269)
T ss_dssp             HHHHTTCCSCC------CCTTSCCSGGGSCTTCHHHHHTTC-----
T ss_pred             HHHHCCCCCCC------cCCCCCCHHHHHHhCCcHHHHHHHHHHhc
Confidence            99999998887      77899999999988776 34444444443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.98  E-value=1.2e-32  Score=311.45  Aligned_cols=237  Identities=12%  Similarity=0.112  Sum_probs=194.7

Q ss_pred             CCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcH
Q 001365          534 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDIT  613 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~Tp  613 (1092)
                      .+..+.||||+||..|+++++++||+.|++++  ..+..|.||||+||.+|+    +..+++|+..|++++.  ..|.||
T Consensus        16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~--~~g~t~   87 (364)
T 3ljn_A           16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPT--IQNRFGCTALHLACKFGC----VDTAKYLASVGEVHSL--WHGQKP   87 (364)
T ss_dssp             CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHHCC----HHHHHHHHHHCCCCCC--BTTBCH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCcHHHHHHHcCC----HHHHHHHHHCCCCccc--cCCCCH
Confidence            45667999999999999999999999999977  567779999999999986    4455789999996655  579999


Q ss_pred             Hhh----hHHHHHHHHhc-----CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhc--CCChHHHHHHH
Q 001365          614 SEN----LRMQFGKLLCL-----TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEE--KFSSEEVKEKL  682 (1092)
Q Consensus       614 L~~----~~~~lvkLLl~-----gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~--~~s~~~~~~~l  682 (1092)
                      ||.    ++.+++++|+.     +++.+............    . ......+..|+||||.|+..+  ...        
T Consensus        88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~g~t~L~~A~~~g~~~~~--------  154 (364)
T 3ljn_A           88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVN----E-IGSHVKHCKGQTALHWCVGLGPEYLE--------  154 (364)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEE----E-ETTEEEEESCCCHHHHHHHSCGGGHH--------
T ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhh----h-hccccCCCCCCCHHHHHHHcCCchHH--------
Confidence            995    77888888865     33221100000000000    0 000113467899999998866  322        


Q ss_pred             HHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCC-----ccccCCCCccHHHHHHHcC
Q 001365          683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVN-----INFRDVNGWTALHWAAYCG  757 (1092)
Q Consensus       683 L~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gad-----in~~D~~G~TpLH~Aa~~G  757 (1092)
                                  ++++|+++|+++|.+|..|.||||+||..|+.++|++|+++|++     +|.+|..|+||||+||..|
T Consensus       155 ------------~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g  222 (364)
T 3ljn_A          155 ------------MIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN  222 (364)
T ss_dssp             ------------HHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTT
T ss_pred             ------------HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcC
Confidence                        78899999999999999999999999999999999999999999     9999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          758 RERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       758 ~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                      +.++|++||++|+++|.      +|..|+||||+|+..|+.+++++|+++|+
T Consensus       223 ~~~~v~~Ll~~gad~~~------~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~  268 (364)
T 3ljn_A          223 WEDVAMRFVEMGIDVNM------EDNEHTVPLYLSVRAAMVLLTKELLQKTD  268 (364)
T ss_dssp             CHHHHHHHHTTTCCTTC------CCTTSCCHHHHHHHTCCHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHcCCCCCC------CCCCCCCHHHHHHHhChHHHHHHHHHcCC
Confidence            99999999999999887      78999999999999999999999999983

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.98  E-value=1.4e-31  Score=281.93  Aligned_cols=218  Identities=17%  Similarity=0.101  Sum_probs=192.9

Q ss_pred             cChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh-
Q 001365          538 EAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN-  616 (1092)
Q Consensus       538 ~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~-  616 (1092)
                      ..+|||+||..|++++++.|+..+... ....+..|.||||+||..|+    +..+++|++.|++++..|..|.||||. 
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   80 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGH----TEIVEFLLQLGVPVNDKDDAGWSPLHIA   80 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGG-GGCCCTTSCCHHHHHHHHTC----HHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhh-hhcCCCCCCCHHHHHHHcCc----HHHHHHHHHhCCCCCCcCCCCCCHHHHH
Confidence            467999999999999999999887542 23557789999999999986    555578999999999999999999995 


Q ss_pred             ---hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhH
Q 001365          617 ---LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQ  692 (1092)
Q Consensus       617 ---~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~  692 (1092)
                         ++.+++++|+. +++++..                      +..|.+||+.++..+...                  
T Consensus        81 ~~~~~~~~v~~Ll~~g~~~~~~----------------------~~~g~t~L~~A~~~~~~~------------------  120 (231)
T 3aji_A           81 ASAGXDEIVKALLVKGAHVNAV----------------------NQNGCTPLHYAASKNRHE------------------  120 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCC----------------------CTTSCCHHHHHHHTTCHH------------------
T ss_pred             HHcCHHHHHHHHHHcCCCCCCC----------------------CCCCCCHHHHHHHcCCHH------------------
Confidence               67788887754 6655433                      257899999998766542                  


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCC
Q 001365          693 VWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP  772 (1092)
Q Consensus       693 ~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdi  772 (1092)
                        ++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|+++
T Consensus       121 --~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  198 (231)
T 3aji_A          121 --IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI  198 (231)
T ss_dssp             --HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             --HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Confidence              778899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          773 GALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       773 n~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      +.      +|..|.||||+|+..++.+++++|+++|
T Consensus       199 ~~------~~~~g~t~l~~A~~~~~~~i~~lL~~~~  228 (231)
T 3aji_A          199 YI------ENKEEKTPLQVAKGGLGLILKRLAEGEE  228 (231)
T ss_dssp             CC------CCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred             CC------CCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence            87      7899999999999999999999999987

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.98  E-value=2.3e-31  Score=292.89  Aligned_cols=234  Identities=12%  Similarity=-0.001  Sum_probs=178.8

Q ss_pred             cccChHHHHHHHcCCcHHHHHHHHCCCC---------CCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccc
Q 001365          536 QQEAENCKWSCMFGEIEVPAEIVAGGVL---------RCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVA  606 (1092)
Q Consensus       536 ~~~~TpLH~A~~fG~veVv~~LL~~Gad---------in~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~  606 (1092)
                      +.+.|+||+||+.|+.+.+..++..+..         -.....+..|+||||+||..|+    +..+++|+..|++++.+
T Consensus        13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~----~~~v~~Ll~~g~~~~~~   88 (285)
T 3d9h_A           13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGH----QLSLRNLISQGWAVNII   88 (285)
T ss_dssp             -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTC----HHHHHHHHHTTCCSCEE
T ss_pred             hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCC----HHHHHHHHHCCCCCCCc
Confidence            4578999999999998777776554311         1122457789999999999986    55567899999999999


Q ss_pred             cCCCCcHHhh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHH
Q 001365          607 DNCGDITSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEK  681 (1092)
Q Consensus       607 D~~G~TpL~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~  681 (1092)
                      |..|.||||+    ++.+++++|+. |++++..                      +..|+|||+.|+..+...       
T Consensus        89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~----------------------~~~g~t~L~~A~~~~~~~-------  139 (285)
T 3d9h_A           89 TADHVSPLHEACLGGHLSCVKILLKHGAQVNGV----------------------TADWHTPLFNACVSGSWD-------  139 (285)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCC----------------------CTTCCCHHHHHHHHTCHH-------
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC----------------------CCCCCCHHHHHHHcCHHH-------
Confidence            9999999995    77788888754 6665443                      257899999998866542       


Q ss_pred             HHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHH
Q 001365          682 LVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERT  761 (1092)
Q Consensus       682 lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~ei  761 (1092)
                                   ++++|++.|++++..+ .|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++
T Consensus       140 -------------~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~  205 (285)
T 3d9h_A          140 -------------CVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRAC  205 (285)
T ss_dssp             -------------HHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHH
T ss_pred             -------------HHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence                         7888999999998654 59999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHH
Q 001365          762 VASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEV  828 (1092)
Q Consensus       762 V~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~i  828 (1092)
                      |++|+++|++++.       |..|.||||+|+..|+.+++++|+++|     ++++.+|..|.|+..
T Consensus       206 v~~Ll~~ga~~~~-------~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----ad~~~~d~~g~t~l~  260 (285)
T 3d9h_A          206 VKKLLESGADVNQ-------GKGQDSPLHAVVRTASEELACLLMDFG-----ADTQAKNAEGKRPVE  260 (285)
T ss_dssp             HHHHHHTTCCTTC-------CBTTBCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCGGG
T ss_pred             HHHHHHCCCCCCC-------CCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCCCCCHHH
Confidence            9999999999873       578999999999999999999999998     789999999977643

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=1.3e-31  Score=306.05  Aligned_cols=223  Identities=17%  Similarity=0.127  Sum_probs=193.7

Q ss_pred             cccChHHHHHHHcCCcHHHHHHH--------HCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCccccc
Q 001365          536 QQEAENCKWSCMFGEIEVPAEIV--------AGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVAD  607 (1092)
Q Consensus       536 ~~~~TpLH~A~~fG~veVv~~LL--------~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D  607 (1092)
                      ..+.||||+||..|+.++++.|+        +.|++++  ..+..|.||||+||.+|+    +..+++|+..|++++..|
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn--~~d~~g~TpL~~A~~~g~----~~iv~~Ll~~ga~~~~~~  196 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN--AMDCDENTPLMLAVLARR----RRLVAYLMKAGADPTIYN  196 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT--CCCTTSCCHHHHHHHHTC----HHHHHHHHHTTCCSCCCC
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCc--CCCCCCCCHHHHHHHcCh----HHHHHHHHHCCCCCcccC
Confidence            46789999999999998888776        8999987  567779999999999986    455578999999999999


Q ss_pred             CCCCcHHhh----hHHHHHHHHhcC----CCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHH
Q 001365          608 NCGDITSEN----LRMQFGKLLCLT----SVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVK  679 (1092)
Q Consensus       608 ~~G~TpL~~----~~~~lvkLLl~g----adv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~  679 (1092)
                      ..|.||||.    ++.+++++|+..    ++++.                      .+..|+|+||.++..+....    
T Consensus       197 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------------------~d~~g~t~L~~A~~~~~~~~----  250 (373)
T 2fo1_E          197 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE----------------------LDRNGMTALMIVAHNEGRDQ----  250 (373)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSC----------------------CCTTSCCHHHHHHHSCSTTH----
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHhcCccccChhh----------------------cCCCCCCHHHHHHHhCCcch----
Confidence            999999995    677888888653    23332                      23689999999887654221    


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHhCCCCCCc--------ccCCCCcHHHHHHHcCCHhHHHHHHHCC-CCccccCCCCccHH
Q 001365          680 EKLVQKLLKEKLQVWLVQKAAEGGKGPCV--------LDHCGQGVLHFAAALGYDWALEPTTVAG-VNINFRDVNGWTAL  750 (1092)
Q Consensus       680 ~~lL~~a~k~~l~~~LvklLle~GadvN~--------~D~~G~TpLH~AA~~G~~~iVk~LL~~G-adin~~D~~G~TpL  750 (1092)
                                   .-++++|+++|++++.        .|..|.||||+||..|+.++|++|+++| ++++.+|..|+|||
T Consensus       251 -------------~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL  317 (373)
T 2fo1_E          251 -------------VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI  317 (373)
T ss_dssp             -------------HHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred             -------------HHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHH
Confidence                         1278889999999986        6779999999999999999999999876 99999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          751 HWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       751 H~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                      |+|+..|+.++|++|+++|++++.      +|..|.||||+|+.+|+.+++++|+++++
T Consensus       318 ~~A~~~g~~~iv~~Ll~~gad~~~------~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          318 MLAAQEGRIEVVMYLIQQGASVEA------VDATDHTARQLAQANNHHNIVDIFDRCRP  370 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSC------CCSSSCCHHHHHHHTTCHHHHHHHHTTC-
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccC------CCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            999999999999999999999888      77999999999999999999999999884

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=3.5e-30  Score=270.32  Aligned_cols=204  Identities=20%  Similarity=0.197  Sum_probs=168.7

Q ss_pred             cChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcc--c-ccCCCCcHH
Q 001365          538 EAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVD--V-ADNCGDITS  614 (1092)
Q Consensus       538 ~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvn--a-~D~~G~TpL  614 (1092)
                      +.||||+||..|+.++++.|++.|.+.. ...+..|.||||+||..|+    +..+++|+..|++++  . .+       
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~~~~~~-------   69 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLL-LQKDQDGRIPLHWSVSFQA----HEITSFLLSKMENVNLDDYPD-------   69 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGT-TCCCTTSCCHHHHHHHTTC----HHHHHHHHHTCTTCCGGGCCC-------
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCcccc-ccCCCCCCCHHHHHHHcCC----HHHHHHHHhccccccccccCC-------
Confidence            3589999999999999999999998754 2357789999999999985    455578899885443  3 33       


Q ss_pred             hhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHH
Q 001365          615 ENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVW  694 (1092)
Q Consensus       615 ~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~  694 (1092)
                                                                 ..|++|||.|+..+...                    
T Consensus        70 -------------------------------------------~~g~t~L~~A~~~~~~~--------------------   86 (228)
T 2dzn_A           70 -------------------------------------------DSGWTPFHIACSVGNLE--------------------   86 (228)
T ss_dssp             -------------------------------------------TTSCCHHHHHHHHCCHH--------------------
T ss_pred             -------------------------------------------CCCCCHHHHHHHcCCHH--------------------
Confidence                                                       34556666666544432                    


Q ss_pred             HHHHHHhCC--CCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcC-CC
Q 001365          695 LVQKAAEGG--KGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG-AA  771 (1092)
Q Consensus       695 LvklLle~G--advN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~G-Ad  771 (1092)
                      +++.|+++|  ++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++| ++
T Consensus        87 ~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  166 (228)
T 2dzn_A           87 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA  166 (228)
T ss_dssp             HHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred             HHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            677888888  888889999999999999999999999999999999999999999999999999999999999998 87


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCcccCcccCCCCCcHH
Q 001365          772 PGALSDPTPKYPSGRTPADLASSIGHKGIAGYLA-ESDLSSALSAISLNKKDGDVAE  827 (1092)
Q Consensus       772 in~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LL-e~Ga~~h~adlnlkD~~G~ta~  827 (1092)
                      ++.      +|..|+||||+|+..|+.+++++|+ +.|     ++++.+|..|.++.
T Consensus       167 ~~~------~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g-----a~~~~~~~~g~t~l  212 (228)
T 2dzn_A          167 VNW------QDKQGWTPLFHALAEGHGDAAVLLVEKYG-----AEYDLVDNKGAKAE  212 (228)
T ss_dssp             SCC------CCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----CCSCCBCTTSCBGG
T ss_pred             ccC------cCCCCCCHHHHHHHcCCHHHHHHHHHhcC-----CCCCccCCCCCcHH
Confidence            776      7789999999999999999999999 778     67889999997664

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=5.3e-30  Score=269.16  Aligned_cols=221  Identities=18%  Similarity=0.119  Sum_probs=192.9

Q ss_pred             CcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCccccc-CCCCcH
Q 001365          535 SQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVAD-NCGDIT  613 (1092)
Q Consensus       535 ~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D-~~G~Tp  613 (1092)
                      +..+.|+||+||..|+.+++++|++.|++++  ..+..|.||||+||..|+    +..+++|++.|++++..+ ..|.||
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~~~~~~~~t~   79 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVEAGYDVR--QPDKENVTLLHWAAINNR----IDLVKYYISKGAIVDQLGGDLNSTP   79 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCBTTTTBCH
T ss_pred             ccccchHHHHHHHcCChHHHHHHHHcCCCcC--CCCCCCCCHHHHHHHhCC----HHHHHHHHHcCCcchhhcCCcCCCh
Confidence            4456789999999999999999999999876  566779999999999986    555678999999988764 459999


Q ss_pred             Hhh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHH
Q 001365          614 SEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLK  688 (1092)
Q Consensus       614 L~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k  688 (1092)
                      ||.    ++.+++++|+. |++++..                      +..|.+||+.|+..+...              
T Consensus        80 L~~A~~~~~~~~v~~Ll~~g~~~~~~----------------------~~~g~t~l~~A~~~~~~~--------------  123 (240)
T 3eu9_A           80 LHWATRQGHLSMVVQLMKYGADPSLI----------------------DGEGCSCIHLAAQFGHTS--------------  123 (240)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCC----------------------CTTSCCHHHHHHHTTCHH--------------
T ss_pred             hHHHHHcCCHHHHHHHHHcCCCCccc----------------------CCCCCCHHHHHHHcCHHH--------------
Confidence            995    66788887754 5655433                      257889999988766532              


Q ss_pred             hhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCC-HhHHHHHHHCCCCccccCC-CCccHHHHHHHcCCHHHHHHHH
Q 001365          689 EKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGY-DWALEPTTVAGVNINFRDV-NGWTALHWAAYCGRERTVASLI  766 (1092)
Q Consensus       689 ~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~-~~iVk~LL~~Gadin~~D~-~G~TpLH~Aa~~G~~eiV~~LL  766 (1092)
                            +++.|+++|++++..|..|.||||+|+..|+ .+++++|++.|++++..+. .|.||||+|+..|+.++|++|+
T Consensus       124 ------~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  197 (240)
T 3eu9_A          124 ------IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL  197 (240)
T ss_dssp             ------HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             ------HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHH
Confidence                  7888999999999999999999999997776 8999999999999999997 9999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          767 ALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       767 e~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                      ++|++++.      +|..|.||||+|+..|+.+++++|++++.
T Consensus       198 ~~g~~~~~------~~~~g~t~l~~A~~~~~~~~v~~L~~~~~  234 (240)
T 3eu9_A          198 EAGANVDA------QNIKGESALDLAKQRKNVWMINHLQEARQ  234 (240)
T ss_dssp             HHTCCTTC------BCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred             HcCCCCCC------cCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence            99999887      77999999999999999999999999984

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=3.7e-30  Score=269.62  Aligned_cols=193  Identities=18%  Similarity=0.174  Sum_probs=154.7

Q ss_pred             cccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCC-CcccccCCCCcHH
Q 001365          536 QQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIP-DVDVADNCGDITS  614 (1092)
Q Consensus       536 ~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Ga-dvna~D~~G~TpL  614 (1092)
                      ..+.||||+||..|+.+++++|++.|++++  ..+..|.||||+||..|+    ...+++|+..++ +++..+.      
T Consensus        23 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~~~~~------   90 (223)
T 2f8y_A           23 RTGETALHLAARYSRSDAAKRLLEASADAN--IQDNMGRTPLHAAVSADA----QGVFQILIRNRATDLDARMH------   90 (223)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTC----HHHHHHHHHBTTSCTTCCCT------
T ss_pred             CCCCchHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCcccCCC------
Confidence            445677777777777777777777776655  445557777777776664    333345555554 4444444      


Q ss_pred             hhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHH
Q 001365          615 ENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVW  694 (1092)
Q Consensus       615 ~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~  694 (1092)
                                                                  .+++||+.|+..+...                    
T Consensus        91 --------------------------------------------~g~t~L~~A~~~~~~~--------------------  106 (223)
T 2f8y_A           91 --------------------------------------------DGTTPLILAARLAVEG--------------------  106 (223)
T ss_dssp             --------------------------------------------TCCCHHHHHHHHTCHH--------------------
T ss_pred             --------------------------------------------CCCcHHHHHHHhCcHH--------------------
Confidence                                                        4555555555544321                    


Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      +++.|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.
T Consensus       107 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  186 (223)
T 2f8y_A          107 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI  186 (223)
T ss_dssp             HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Q 001365          775 LSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLS  810 (1092)
Q Consensus       775 ~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~  810 (1092)
                            +|..|.||||+|+..|+.+++++|+++|+.
T Consensus       187 ------~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          187 ------TDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             ------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             ------ccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence                  789999999999999999999999999954

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=7e-31  Score=300.13  Aligned_cols=235  Identities=16%  Similarity=0.116  Sum_probs=195.9

Q ss_pred             CcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCC-CCCchHHHHHHHcCCCchhHHH------HHHHHhCCCCccccc
Q 001365          535 SQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQ-KVGRVPFYVTCSNRLSCSEVRE------FEYRASHIPDVDVAD  607 (1092)
Q Consensus       535 ~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d-~~G~TPLHlAa~ng~~~seVv~------fe~Ll~~Gadvna~D  607 (1092)
                      +..+.||||+||..| .++++.|+..  +++  ..+ ..|+||||+||.+|+  .+++.      .+.|+..|+++|..|
T Consensus        91 ~~~g~t~L~~Aa~~~-~~~~~~L~~~--~~n--~~d~~~g~t~Lh~Aa~~g~--~~~v~~Ll~~~~~~ll~~ga~vn~~d  163 (373)
T 2fo1_E           91 EPESPIKLHTEAAGS-YAITEPITRE--SVN--IIDPRHNRTVLHWIASNSS--AEKSEDLIVHEAKECIAAGADVNAMD  163 (373)
T ss_dssp             ---CCCHHHHHHHSS-SCCCSCCSTT--TTT--TCCCSSCCCHHHHHHCTTC--CSCCTTHHHHHHHHHHHTCCCTTCCC
T ss_pred             CCCCccHHHHHhcCC-chHHHHhccc--ccc--ccCCcCCCCHHHHHHHCCC--HHHHHHHHHHHHHHHHhcCCCCcCCC
Confidence            456789999999955 5788888654  334  344 679999999999986  33332      234568999999999


Q ss_pred             CCCCcHHhh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHH
Q 001365          608 NCGDITSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKL  682 (1092)
Q Consensus       608 ~~G~TpL~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~l  682 (1092)
                      ..|.||||+    ++.+++++|+. |++++..+                      ..|.|+||.|+..+...        
T Consensus       164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~----------------------~~g~t~L~~A~~~g~~~--------  213 (373)
T 2fo1_E          164 CDENTPLMLAVLARRRRLVAYLMKAGADPTIYN----------------------KSERSALHQAAANRDFG--------  213 (373)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC----------------------TTCCCHHHHHHHTTCHH--------
T ss_pred             CCCCCHHHHHHHcChHHHHHHHHHCCCCCcccC----------------------CCCCCHHHHHHHCCCHH--------
Confidence            999999995    77788888754 77665432                      57899999998876643        


Q ss_pred             HHHHHHhhhHHHHHHHHHhCC---CCCCcccCCCCcHHHHHHHcC---CHhHHHHHHHCCCCccc--------cCCCCcc
Q 001365          683 VQKLLKEKLQVWLVQKAAEGG---KGPCVLDHCGQGVLHFAAALG---YDWALEPTTVAGVNINF--------RDVNGWT  748 (1092)
Q Consensus       683 L~~a~k~~l~~~LvklLle~G---advN~~D~~G~TpLH~AA~~G---~~~iVk~LL~~Gadin~--------~D~~G~T  748 (1092)
                                  ++++|+++|   ++++..|..|.||||+||..|   +.+++++|+++|++++.        +|..|+|
T Consensus       214 ------------~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t  281 (373)
T 2fo1_E          214 ------------MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT  281 (373)
T ss_dssp             ------------HHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred             ------------HHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCC
Confidence                        778888888   899999999999999999998   89999999999999987        6779999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHH
Q 001365          749 ALHWAAYCGRERTVASLIALG-AAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAE  827 (1092)
Q Consensus       749 pLH~Aa~~G~~eiV~~LLe~G-Adin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~  827 (1092)
                      |||+||..|+.++|++|+++| +++|.      +|..|+||||+|+..|+.++|++|+++|     ++++.+|..|.|+.
T Consensus       282 ~Lh~A~~~g~~~~v~~Ll~~~~~~~n~------~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-----ad~~~~d~~g~t~l  350 (373)
T 2fo1_E          282 ALHYAAQVSNMPIVKYLVGEKGSNKDK------QDEDGKTPIMLAAQEGRIEVVMYLIQQG-----ASVEAVDATDHTAR  350 (373)
T ss_dssp             THHHHHSSCCHHHHHHHHHHSCCCTTC------CCTTCCCHHHHHHHHTCHHHHHHHHHTT-----CCSSCCCSSSCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHhcCCCccC------cCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCccCCCCCCCCHH
Confidence            999999999999999999886 88877      7899999999999999999999999998     78999999997664


Q ss_pred             HH
Q 001365          828 VT  829 (1092)
Q Consensus       828 ia  829 (1092)
                      ..
T Consensus       351 ~~  352 (373)
T 2fo1_E          351 QL  352 (373)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=7.4e-30  Score=269.37  Aligned_cols=195  Identities=14%  Similarity=0.102  Sum_probs=161.6

Q ss_pred             cChHHHHHHHcCCcHHHHHHHHC-CCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCc-----ccccCCCC
Q 001365          538 EAENCKWSCMFGEIEVPAEIVAG-GVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDV-----DVADNCGD  611 (1092)
Q Consensus       538 ~~TpLH~A~~fG~veVv~~LL~~-Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadv-----na~D~~G~  611 (1092)
                      +.||||+||..|+.++++.|++. |++++  ..+..|.||||+||..|+    +..+++|++.|+++     +..|.   
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~--~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~~~---   73 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEVH--QRGAMGETALHIAALYDN----LEAAMVLMEAAPELVFEPMTSELY---   73 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCTT--CCCTTSCCHHHHHHHTTC----HHHHHHHHHHCGGGGGCCCCSTTT---
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCcc--cCCCCCCCHHHHHHHcCC----HHHHHHHHHcCchhccccccccCC---
Confidence            57899999999999999999998 99877  567789999999999986    44557888888876     33333   


Q ss_pred             cHHhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhh
Q 001365          612 ITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKL  691 (1092)
Q Consensus       612 TpL~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l  691 (1092)
                                                                     .|+||||.|+..+...                 
T Consensus        74 -----------------------------------------------~g~t~L~~A~~~~~~~-----------------   89 (232)
T 2rfa_A           74 -----------------------------------------------EGQTALHIAVINQNVN-----------------   89 (232)
T ss_dssp             -----------------------------------------------TTCCHHHHHHHTTCHH-----------------
T ss_pred             -----------------------------------------------CCcCHHHHHHHcCCHH-----------------
Confidence                                                           4555555555544321                 


Q ss_pred             HHHHHHHHHhCCCCCCcccC-------------CCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCC
Q 001365          692 QVWLVQKAAEGGKGPCVLDH-------------CGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR  758 (1092)
Q Consensus       692 ~~~LvklLle~GadvN~~D~-------------~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~  758 (1092)
                         ++++|+++|++++..+.             .|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+
T Consensus        90 ---~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~  166 (232)
T 2rfa_A           90 ---LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPN  166 (232)
T ss_dssp             ---HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSC
T ss_pred             ---HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence               55666666666666554             89999999999999999999999999999999999999999999999


Q ss_pred             HHHH----HHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          759 ERTV----ASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       759 ~eiV----~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      .+++    ++|+++|++++.....+.+|..|+||||+|+..|+.+++++|+++|
T Consensus       167 ~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g  220 (232)
T 2rfa_A          167 KTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR  220 (232)
T ss_dssp             HHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9988    9999999988532212348899999999999999999999999998

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=4.7e-29  Score=263.70  Aligned_cols=209  Identities=17%  Similarity=0.180  Sum_probs=184.5

Q ss_pred             CCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh----hHHHHHHHHhc-CCCCCCCCCCCC
Q 001365          565 CHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN----LRMQFGKLLCL-TSVSTPNYDPSN  639 (1092)
Q Consensus       565 n~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~----~~~~lvkLLl~-gadv~~~~~~~~  639 (1092)
                      +....+..|.||||+||..|+    +..+++|++.|++++..+..|.||||.    ++.+++++|+. |++++..     
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-----   73 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGH----VDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK-----   73 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTC----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCC-----
T ss_pred             CcccccCCCCCHHHHHHHcCc----HHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC-----
Confidence            444677889999999999986    555678999999999999999999995    77788888765 5555433     


Q ss_pred             chhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCC-CCCCcccCCCCcHHH
Q 001365          640 LSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGG-KGPCVLDHCGQGVLH  718 (1092)
Q Consensus       640 ~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~G-advN~~D~~G~TpLH  718 (1092)
                                       +..|.+||+.++..+...                    ++++|++.| .+++..|..|.||||
T Consensus        74 -----------------~~~g~t~L~~A~~~~~~~--------------------~~~~Ll~~~~~~~~~~~~~g~t~L~  116 (237)
T 3b7b_A           74 -----------------DAEGSTCLHLAAKKGHYE--------------------VVQYLLSNGQMDVNCQDDGGWTPMI  116 (237)
T ss_dssp             -----------------CTTSCCHHHHHHHTTCHH--------------------HHHHHHTTTCCCTTCCCTTSCCHHH
T ss_pred             -----------------CCCCCcHHHHHHHcCCHH--------------------HHHHHHhCCCCCcccCCCCCCCHHH
Confidence                             257889999988766542                    778899988 899999999999999


Q ss_pred             HHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcH
Q 001365          719 FAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHK  798 (1092)
Q Consensus       719 ~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~  798 (1092)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.      +|..|.||||+|+..|+.
T Consensus       117 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~  190 (237)
T 3b7b_A          117 WATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA------VNIHGDSPLHIAARENRY  190 (237)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTC------CCTTCCCHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC------cCCCCCCHHHHHHHhCCH
Confidence            99999999999999999999999999999999999999999999999999999887      778999999999999999


Q ss_pred             HHHHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          799 GIAGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       799 eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      +++++|+++|     ++++++|..|.|+...+
T Consensus       191 ~~v~~Ll~~g-----ad~~~~d~~g~t~l~~A  217 (237)
T 3b7b_A          191 DCVVLFLSRD-----SDVTLKNKEGETPLQCA  217 (237)
T ss_dssp             HHHHHHHTTT-----CCTTCCCTTSCCHHHHS
T ss_pred             hHHHHHHHcC-----CCCCccCCCCCCHHHHH
Confidence            9999999998     78999999998775444

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.96  E-value=9.9e-30  Score=273.81  Aligned_cols=217  Identities=17%  Similarity=0.117  Sum_probs=155.8

Q ss_pred             CCCCCCchHHHHHHHcCCC---------chhHHHHHHHHhCCCCcccc-cCCCCcHHhh----hHHHHHHHHhc-CCCCC
Q 001365          568 SSQKVGRVPFYVTCSNRLS---------CSEVREFEYRASHIPDVDVA-DNCGDITSEN----LRMQFGKLLCL-TSVST  632 (1092)
Q Consensus       568 ~~d~~G~TPLHlAa~ng~~---------~seVv~fe~Ll~~Gadvna~-D~~G~TpL~~----~~~~lvkLLl~-gadv~  632 (1092)
                      .+|..|+||||+||..|..         ...+..+++|+..|++++.. |..|.||||+    ++.+++++|+. |++++
T Consensus         5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~   84 (253)
T 1yyh_A            5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN   84 (253)
T ss_dssp             -----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5677899999999987610         01345567899999998664 8999999995    77788888754 66664


Q ss_pred             CCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCC-CCCcccC
Q 001365          633 PNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGK-GPCVLDH  711 (1092)
Q Consensus       633 ~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~Ga-dvN~~D~  711 (1092)
                      ..                      +..|+||||.|+..+...                    ++++|++.|+ +++..|.
T Consensus        85 ~~----------------------~~~g~t~L~~A~~~~~~~--------------------~v~~Ll~~~~~~~~~~~~  122 (253)
T 1yyh_A           85 IQ----------------------DNMGRTPLHAAVSADAQG--------------------VFQILIRNRATDLDARMH  122 (253)
T ss_dssp             CC----------------------CTTSCCHHHHHHHHTCHH--------------------HHHHHHHSTTSCTTCCCT
T ss_pred             CC----------------------CCCCCCHHHHHHHcCCHH--------------------HHHHHHHcCCCCccccCC
Confidence            43                      257899999998766542                    7788898887 8999999


Q ss_pred             CCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHH
Q 001365          712 CGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADL  791 (1092)
Q Consensus       712 ~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhl  791 (1092)
                      .|.||||+|+..|+.++|++|+++|++++.+|..|+||||+||..|+.++|++|+++|++++.      +|..|.||||+
T Consensus       123 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------~~~~g~tpL~~  196 (253)
T 1yyh_A          123 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM------QNNREETPLFL  196 (253)
T ss_dssp             TCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC------CCTTSCCHHHH
T ss_pred             CCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC------cCCCCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999887      78999999999


Q ss_pred             HHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH-HHHhhhhhccc
Q 001365          792 ASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA-EVTGATAVQTV  837 (1092)
Q Consensus       792 Aa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta-~iaa~~~v~~l  837 (1092)
                      |+..|+.+++++|+++|     ++++++|..|.++ .++......++
T Consensus       197 A~~~~~~~~v~~Ll~~g-----a~~~~~d~~g~tpl~~A~~~g~~~i  238 (253)
T 1yyh_A          197 AAREGSYETAKVLLDHF-----ANRDITDHMDRLPRDIAQERMHHDI  238 (253)
T ss_dssp             HHHHTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHCCCHHHHHHHHHcC-----CCccccccCCCCHHHHHHHcCCHHH
Confidence            99999999999999998     7899999999666 55554443333

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=2.9e-29  Score=274.56  Aligned_cols=233  Identities=19%  Similarity=0.141  Sum_probs=180.5

Q ss_pred             ccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh
Q 001365          537 QEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN  616 (1092)
Q Consensus       537 ~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~  616 (1092)
                      .+.|+||+||..|++++++.||+.|++++  ..+..|.||||+||..|+    +..+++|+..|++++..|..|.||||+
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~~~~~~~~g~tpL~~  112 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLERGADIN--YANVDGLTALHQACIDDN----VDMVKFLVENGANINQPDNEGWIPLHA  112 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTT--CBCTTCCBHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCCHHHHHHHcCC----HHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            45689999999999999999999999977  556679999999999986    455578999999999999999999995


Q ss_pred             ----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHH-------
Q 001365          617 ----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQ-------  684 (1092)
Q Consensus       617 ----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~-------  684 (1092)
                          ++.+++++|+. |++++..+                      ..|.|||+.++..+.....   ..++.       
T Consensus       113 A~~~g~~~~v~~Ll~~g~~~~~~~----------------------~~g~t~l~~A~~~~~~~~~---~~ll~~~~~~~~  167 (299)
T 1s70_B          113 AASCGYLDIAEYLISQGAHVGAVN----------------------SEGDTPLDIAEEEAMEELL---QNEVNRQGVDIE  167 (299)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCC----------------------TTSCCHHHHCCSHHHHHHH---HHHHHHHTCCHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCcC----------------------CCCCCHHHHHHhcchHHHH---HHHHhhcCCCch
Confidence                77788888754 66654432                      4677888877654322110   00000       


Q ss_pred             ---HHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHH
Q 001365          685 ---KLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERT  761 (1092)
Q Consensus       685 ---~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~ei  761 (1092)
                         ......+...+..++..........+..|.||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+.++
T Consensus       168 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~  247 (299)
T 1s70_B          168 AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEA  247 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             hhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHH
Confidence               00001111123334444455566678899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 001365          762 VASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE  806 (1092)
Q Consensus       762 V~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe  806 (1092)
                      |++|+++|+++++      +|..|.||||+|+.....-+.+++-+
T Consensus       248 v~~Ll~~gad~~~------~d~~g~t~l~~A~~~~~~~l~~l~~~  286 (299)
T 1s70_B          248 CRILVENLCDMEA------VNKVGQTAFDVADEDILGYLEELQKK  286 (299)
T ss_dssp             HHHHHHTTCCTTC------CCTTSCCTTTSCCSGGGHHHHHHHHH
T ss_pred             HHHHHHcCCCCCC------cCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999887      78999999999987544444444443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=3e-30  Score=273.89  Aligned_cols=206  Identities=17%  Similarity=0.138  Sum_probs=168.9

Q ss_pred             CcccChHHHHHHHcCCcHHHHHHHHCCC----CCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCC
Q 001365          535 SQQEAENCKWSCMFGEIEVPAEIVAGGV----LRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCG  610 (1092)
Q Consensus       535 ~~~~~TpLH~A~~fG~veVv~~LL~~Ga----din~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G  610 (1092)
                      +..+.||||+||..|+.+++++|++.+.    +++  ..+..|.||||+||..|+    +..+++|+..|++++.+|..|
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g   78 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN--FQNNLQQTPLHLAVITNQ----PEIAEALLGAGCDPELRDFRG   78 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCC--CCCTTCCCHHHHHHHTTC----HHHHHCCCSCCCCSCCCCTTC
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhh--ccCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCCCcCCCC
Confidence            4567899999999999999999988776    444  667789999999999986    555678999999999888777


Q ss_pred             CcHHhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhh
Q 001365          611 DITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEK  690 (1092)
Q Consensus       611 ~TpL~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~  690 (1092)
                      .||||+                                                  |+..+...                
T Consensus        79 ~t~L~~--------------------------------------------------A~~~~~~~----------------   92 (236)
T 1ikn_D           79 NTPLHL--------------------------------------------------ACEQGCLA----------------   92 (236)
T ss_dssp             CCHHHH--------------------------------------------------HHHHTCHH----------------
T ss_pred             CCHHHH--------------------------------------------------HHHcCCHH----------------
Confidence            777773                                                  22222211                


Q ss_pred             hHHHHHHHHHhCCCC------CCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCC-CCccHHHHHHHcCCHHHHH
Q 001365          691 LQVWLVQKAAEGGKG------PCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDV-NGWTALHWAAYCGRERTVA  763 (1092)
Q Consensus       691 l~~~LvklLle~Gad------vN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~-~G~TpLH~Aa~~G~~eiV~  763 (1092)
                          ++++|++.|++      ++..|..|.||||+|+..|+.++|++|+++|++++.+|. .|+||||+|+..|+.++|+
T Consensus        93 ----~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~  168 (236)
T 1ikn_D           93 ----SVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS  168 (236)
T ss_dssp             ----HHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ----HHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence                55566666654      467888999999999999999999999999999999998 9999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCc
Q 001365          764 SLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDV  825 (1092)
Q Consensus       764 ~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~t  825 (1092)
                      +|+++|++++.      +|..|.||||+|+..|+.+++++|+++|+.   ....+.+..|.+
T Consensus       169 ~Ll~~ga~~~~------~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~---~~~~~~~~~~~~  221 (236)
T 1ikn_D          169 LLLKCGADVNR------VTYQGYSPYQLTWGRPSTRIQQQLGQLTLE---NLQMLPESEDEE  221 (236)
T ss_dssp             HHHTTTCCSCC------CCTTCCCGGGGCTTSSCHHHHHHHHTTSCG---GGSSCCCCCTTT
T ss_pred             HHHHcCCCCCc------ccCCCCCHHHHHHccCchHHHHHHHHcchh---hhhcCCccchHH
Confidence            99999999887      789999999999999999999999999954   122366666644

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=5.3e-29  Score=255.36  Aligned_cols=155  Identities=26%  Similarity=0.318  Sum_probs=136.5

Q ss_pred             hHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhhhHH
Q 001365          540 ENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRM  619 (1092)
Q Consensus       540 TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~~~~  619 (1092)
                      ++|+.||..|++++|+.||+.|+++|  ..+..|+||||+|+..+.  .+                              
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn--~~d~~g~t~l~~a~~~~~--~~------------------------------   51 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVN--ASDSDGRTPLHHAAENGH--KE------------------------------   51 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTC--HH------------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHcCC--HH------------------------------
Confidence            47899999999999999999999877  566779999999987763  11                              


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHH
Q 001365          620 QFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKA  699 (1092)
Q Consensus       620 ~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklL  699 (1092)
                                                                                                 +++.|
T Consensus        52 ---------------------------------------------------------------------------~~~~l   56 (169)
T 4gpm_A           52 ---------------------------------------------------------------------------VVKLL   56 (169)
T ss_dssp             ---------------------------------------------------------------------------HHHHH
T ss_pred             ---------------------------------------------------------------------------HHHHH
Confidence                                                                                       33446


Q ss_pred             HhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 001365          700 AEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT  779 (1092)
Q Consensus       700 le~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n  779 (1092)
                      ++.|++++.+|..|+||||+||..|+.++|++||++|+++|.+|..|+||||+||..|+.++|++|+++|++++.     
T Consensus        57 l~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~-----  131 (169)
T 4gpm_A           57 ISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT-----  131 (169)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-----
T ss_pred             HhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-----
Confidence            677888999999999999999999999999999999999999999999999999999999999999999999887     


Q ss_pred             CCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          780 PKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       780 ~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                       +|..|+||||+|+..|+.+++++|+++|+
T Consensus       132 -~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A          132 -SDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             -CCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             -cCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence             78999999999999999999999999993

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=1e-28  Score=254.51  Aligned_cols=190  Identities=19%  Similarity=0.141  Sum_probs=165.7

Q ss_pred             ccChHHHHHHHcCCcHHHHHHHHCCC-CCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHh
Q 001365          537 QEAENCKWSCMFGEIEVPAEIVAGGV-LRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSE  615 (1092)
Q Consensus       537 ~~~TpLH~A~~fG~veVv~~LL~~Ga-din~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~  615 (1092)
                      .+.||||+||..|+.++++.|+..+. +++  ..+..|.||||+||..|+    +..+++|++.|++++..|..|.||||
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~--~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~l~   77 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVD--EVDTEGNTPLNIAVHNND----IEIAKALIDRGADINLQNSISDSPYL   77 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTT--CCCTTSCCHHHHHHHHTC----HHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCC--CCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            46789999999999999999999886 655  567779999999999986    55567899999999888776666665


Q ss_pred             hhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHH
Q 001365          616 NLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWL  695 (1092)
Q Consensus       616 ~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~L  695 (1092)
                                                                        .|+..+...                    +
T Consensus        78 --------------------------------------------------~A~~~~~~~--------------------~   87 (201)
T 3hra_A           78 --------------------------------------------------YAGAQGRTE--------------------I   87 (201)
T ss_dssp             --------------------------------------------------HHHHTTCHH--------------------H
T ss_pred             --------------------------------------------------HHHHcCCHH--------------------H
Confidence                                                              333322221                    5


Q ss_pred             HHHHH-hCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCC-CCccccCCCCccHHHHHHHcCC-----HHHHHHHHHc
Q 001365          696 VQKAA-EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAG-VNINFRDVNGWTALHWAAYCGR-----ERTVASLIAL  768 (1092)
Q Consensus       696 vklLl-e~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~G-adin~~D~~G~TpLH~Aa~~G~-----~eiV~~LLe~  768 (1092)
                      +++|+ ..+++++..|..|.||||+|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+     .++|++|+++
T Consensus        88 ~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~  167 (201)
T 3hra_A           88 LAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN  167 (201)
T ss_dssp             HHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHT
T ss_pred             HHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHC
Confidence            56666 677899999999999999999999999999999999 9999999999999999999998     9999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          769 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       769 GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      |++++.      +|..|+||||+|+..|+.+++++|+++|
T Consensus       168 ga~~~~------~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          168 GADQSI------KDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             TCCTTC------CCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCCCCc------cCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            999887      7899999999999999999999999876

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.96  E-value=6.9e-29  Score=262.21  Aligned_cols=213  Identities=15%  Similarity=0.105  Sum_probs=179.1

Q ss_pred             CCCCCCchHHHHHHHcCCCchhHHHHHHHHh----CCCCcccccCCCCcHHhh----hHHHHHHHHhc-CCCCCCCCCCC
Q 001365          568 SSQKVGRVPFYVTCSNRLSCSEVREFEYRAS----HIPDVDVADNCGDITSEN----LRMQFGKLLCL-TSVSTPNYDPS  638 (1092)
Q Consensus       568 ~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~----~Gadvna~D~~G~TpL~~----~~~~lvkLLl~-gadv~~~~~~~  638 (1092)
                      ..|..|.||||+||..|+    +..+++|++    .|++++..|..|.||||.    ++.+++++|+. |++++..    
T Consensus         4 ~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----   75 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGN----LPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL----   75 (241)
T ss_dssp             ---CTTCCHHHHHHHTTC----HHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----
T ss_pred             ccCCCCCcHHHHHHHcCC----HHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcccc----
Confidence            456789999999999986    334455654    899999999999999995    77788888754 6665443    


Q ss_pred             CchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCC----CCCcccCCCC
Q 001365          639 NLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGK----GPCVLDHCGQ  714 (1092)
Q Consensus       639 ~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~Ga----dvN~~D~~G~  714 (1092)
                                        +..|++||+.++..+...                    +++.|++.|+    +++..|..|.
T Consensus        76 ------------------~~~g~t~l~~A~~~~~~~--------------------~~~~Ll~~~~~~~~~~~~~~~~g~  117 (241)
T 1k1a_A           76 ------------------DRHGQTAAHLACEHRSPT--------------------CLRALLDSAAPGTLDLEARNYDGL  117 (241)
T ss_dssp             ------------------CTTSCCHHHHHHHTTCHH--------------------HHHHHHHHSCTTSCCTTCCCTTSC
T ss_pred             ------------------CCCCCCHHHHHHHcCCHH--------------------HHHHHHHcCCCccccccccCcCCC
Confidence                              257899999998866542                    6777888877    8999999999


Q ss_pred             cHHHHHHHcCCHhHHHHHHHCCCCccccC-CCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHH
Q 001365          715 GVLHFAAALGYDWALEPTTVAGVNINFRD-VNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLAS  793 (1092)
Q Consensus       715 TpLH~AA~~G~~~iVk~LL~~Gadin~~D-~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa  793 (1092)
                      ||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+.++|++|+++|++++.      +|..|.||||+|+
T Consensus       118 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~  191 (241)
T 1k1a_A          118 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA------QMYSGSSALHSAS  191 (241)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------BCTTSCBHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC------cCCCCCCHHHHHH
Confidence            99999999999999999999999999999 8899999999999999999999999999887      7799999999999


Q ss_pred             HcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH-HHHhhhhhccc
Q 001365          794 SIGHKGIAGYLAESDLSSALSAISLNKKDGDVA-EVTGATAVQTV  837 (1092)
Q Consensus       794 ~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta-~iaa~~~v~~l  837 (1092)
                      ..|+.+++++|+++|     ++++.+|..|.|+ .++......++
T Consensus       192 ~~~~~~~v~~Ll~~g-----a~~~~~~~~g~tpl~~A~~~~~~~i  231 (241)
T 1k1a_A          192 GRGLLPLVRTLVRSG-----ADSSLKNCHNDTPLMVARSRRVIDI  231 (241)
T ss_dssp             HHTCHHHHHHHHHTT-----CCTTCCCTTSCCTTTTCSSHHHHHH
T ss_pred             HcCCHHHHHHHHhcC-----CCCCCcCCCCCCHHHHHHhcCcHHH
Confidence            999999999999998     7899999999665 44444433333

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=7.6e-29  Score=271.92  Aligned_cols=206  Identities=16%  Similarity=0.039  Sum_probs=162.0

Q ss_pred             CCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCC--------cccccCCCCcHHhhh----H-HHHH-HHHhcCCCCCC
Q 001365          568 SSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPD--------VDVADNCGDITSENL----R-MQFG-KLLCLTSVSTP  633 (1092)
Q Consensus       568 ~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gad--------vna~D~~G~TpL~~~----~-~~lv-kLLl~gadv~~  633 (1092)
                      ..|..+.+||+.||.+|+    +..+++|++.|++        ++..|..|.|||+..    . ..++ .||..|++++.
T Consensus         6 kkd~~~~~~L~~A~~~G~----~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~   81 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGD----LEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNV   81 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTC----HHHHHHHHTCC----------------------------------------CCCCTTC
T ss_pred             ccCccchhHHHHHHHcCC----HHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCC
Confidence            346678999999999986    5555789988875        566788899999852    1 2233 34456787765


Q ss_pred             CCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCC
Q 001365          634 NYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCG  713 (1092)
Q Consensus       634 ~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G  713 (1092)
                      .+                      .+|+||||.|+..+...                    ++++|++.|++++.++..|
T Consensus        82 ~d----------------------~~G~TpLh~A~~~g~~~--------------------~v~~Ll~~~a~~~~~~~~g  119 (269)
T 4b93_B           82 TS----------------------QDGSSPLHVAALHGRAD--------------------LIPLLLKHGANAGARNADQ  119 (269)
T ss_dssp             CC----------------------TTSCCHHHHHHHTTCTT--------------------HHHHHHHTTCCTTCCCTTC
T ss_pred             cC----------------------CCCCCHHHHHHHcCcHH--------------------HHHHHHhcCCCcCccCCCC
Confidence            43                      58999999999988775                    7888999999999999999


Q ss_pred             CcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHH
Q 001365          714 QGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLAS  793 (1092)
Q Consensus       714 ~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa  793 (1092)
                      .||||+|+..++.+++++|+++|+++|.+|..|+||||+||..|+.++|++||++|+++|.      +|..|+||||+|+
T Consensus       120 ~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~------~~~~g~t~Lh~A~  193 (269)
T 4b93_B          120 AVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA------SNNKGNTALHEAV  193 (269)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTC------BCTTSCBHHHHHH
T ss_pred             CCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCc------cccCCCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999887      7799999999999


Q ss_pred             HcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          794 SIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       794 ~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      ..|+.++|++|+++|     ++++++|..|.||...+
T Consensus       194 ~~g~~~~v~~Ll~~G-----ad~~~~d~~G~TpL~~A  225 (269)
T 4b93_B          194 IEKHVFVVELLLLHG-----ASVQVLNKRQRTAVDCA  225 (269)
T ss_dssp             HTTCHHHHHHHHHTT-----CCSCCCCTTSCCSGGGS
T ss_pred             HcCCHHHHHHHHHCC-----CCCCCcCCCCCCHHHHH
Confidence            999999999999998     78999999997765443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=2.3e-29  Score=270.39  Aligned_cols=208  Identities=13%  Similarity=0.027  Sum_probs=168.7

Q ss_pred             cChHHHHHHHcCCcH----HHHHHHHCCCCCCCC--CCCCCCchHHHHHHHc---CCCchhHHHHHHHHhCCCCcccccC
Q 001365          538 EAENCKWSCMFGEIE----VPAEIVAGGVLRCHT--SSQKVGRVPFYVTCSN---RLSCSEVREFEYRASHIPDVDVADN  608 (1092)
Q Consensus       538 ~~TpLH~A~~fG~ve----Vv~~LL~~Gadin~~--~~d~~G~TPLHlAa~n---g~~~seVv~fe~Ll~~Gadvna~D~  608 (1092)
                      +.||||+||..|+.+    ++++|++.|++++..  ..+..|+||||+||.+   |+  .+++  ++|+..|++++..+.
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~--~~~v--~~Ll~~g~~~~~~~~   77 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGV--NACI--MPLLQIDKDSGNPKP   77 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTB--CTTH--HHHHHHHHHTTCSSC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccch--HHHH--HHHHhcCCcccchhh
Confidence            568999999999997    667777899997730  1567799999999998   74  4444  678888877665431


Q ss_pred             CCCcHHhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHH
Q 001365          609 CGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLK  688 (1092)
Q Consensus       609 ~G~TpL~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k  688 (1092)
                           +          +.  ...                      ...+..|+||||.|+..+...              
T Consensus        78 -----~----------~~--~~~----------------------~~~d~~g~t~L~~A~~~g~~~--------------  104 (256)
T 2etb_A           78 -----L----------VN--AQC----------------------TDEFYQGHSALHIAIEKRSLQ--------------  104 (256)
T ss_dssp             -----G----------GG--CCC----------------------CSTTTTTCCHHHHHHHTTCHH--------------
T ss_pred             -----h----------cc--ccc----------------------ccccccCCCHHHHHHHcCCHH--------------
Confidence                 0          00  000                      011246889999988876543              


Q ss_pred             hhhHHHHHHHHHhCCCCCCcccCC-------------CCcHHHHHHHcCCHhHHHHHHH---CCCCccccCCCCccHHHH
Q 001365          689 EKLQVWLVQKAAEGGKGPCVLDHC-------------GQGVLHFAAALGYDWALEPTTV---AGVNINFRDVNGWTALHW  752 (1092)
Q Consensus       689 ~~l~~~LvklLle~GadvN~~D~~-------------G~TpLH~AA~~G~~~iVk~LL~---~Gadin~~D~~G~TpLH~  752 (1092)
                            ++++|+++|+++|.+|..             |.||||+||..|+.++|++|++   +|+++|.+|..|+||||+
T Consensus       105 ------~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~  178 (256)
T 2etb_A          105 ------CVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHA  178 (256)
T ss_dssp             ------HHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHH
T ss_pred             ------HHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHH
Confidence                  788899999999999986             9999999999999999999999   999999999999999999


Q ss_pred             HHH--cCCHH-------HHHHHHHcCCCCCCCCCC-CCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          753 AAY--CGRER-------TVASLIALGAAPGALSDP-TPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       753 Aa~--~G~~e-------iV~~LLe~GAdin~~~D~-n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      ||.  .++.+       +|++|+++|++++...+. +.+|..|+||||+|+..|+.+++++|+++|
T Consensus       179 A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          179 LVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE  244 (256)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence            999  88988       999999999998211000 238899999999999999999999999988

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=2.8e-29  Score=276.42  Aligned_cols=213  Identities=10%  Similarity=-0.033  Sum_probs=152.1

Q ss_pred             CcCCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCC
Q 001365          532 FLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGD  611 (1092)
Q Consensus       532 fl~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~  611 (1092)
                      ...+..+.||||+||..|+.+++++|++.|++++.  .+  |.||||+||..|+  .  ..+++|+..|++++.+|..|.
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~--g~t~L~~A~~~g~--~--~~v~~Ll~~ga~~~~~d~~g~   96 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL--LE--NEFPLHQAATLED--T--KIVKILLFSGLDDSQFDDKGN   96 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC--CT--TCCHHHHHTTSSS--C--HHHHHHHHTTCCTTCCCTTSC
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--CC--CCCHHHHHHHcCC--H--HHHHHHHHCCCCCCCcCCCCC
Confidence            34556789999999999999999999999998774  33  9999999999985  4  445789999999999999999


Q ss_pred             cHHhh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCc-chHHHHhhhhcCCChHHHHHHHHHH
Q 001365          612 ITSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDD-WDLMLKLTAEEKFSSEEVKEKLVQK  685 (1092)
Q Consensus       612 TpL~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g-~t~L~~a~~~~~~s~~~~~~~lL~~  685 (1092)
                      ||||+    ++.+++++|+. |++++..                      +..| .||||.|+..+...           
T Consensus        97 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~----------------------~~~g~~t~L~~A~~~~~~~-----------  143 (285)
T 3kea_A           97 TALYYAVDSGNMQTVKLFVKKNWRLMFY----------------------GKTGWKTSFYHAVMLNDVS-----------  143 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHCGGGGGC----------------------SSSGGGSHHHHHHHTTCHH-----------
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCcc----------------------CCCCCCCHHHHHHHcCCHH-----------
Confidence            99884    55566666543 4444322                      2345 47777766655432           


Q ss_pred             HHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccH-HHHHHHcCCHHHHHH
Q 001365          686 LLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTA-LHWAAYCGRERTVAS  764 (1092)
Q Consensus       686 a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~Tp-LH~Aa~~G~~eiV~~  764 (1092)
                               ++++|+++|+++... ..|.||||+|+..|+.++|++|+++|++++.+|..|+|| ||+|+..|+.++|++
T Consensus       144 ---------~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~  213 (285)
T 3kea_A          144 ---------IVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQA  213 (285)
T ss_dssp             ---------HHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHH
T ss_pred             ---------HHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHH
Confidence                     566667776665222 166777777777777777777777777777777777776 777777777777777


Q ss_pred             HHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          765 LIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       765 LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      |+++|++++.      +|       +.|+..|+.+++++|+++|
T Consensus       214 Ll~~gad~~~------~~-------~~a~~~~~~~iv~~Ll~~g  244 (285)
T 3kea_A          214 LFKYDINIYS------AN-------LENVLLDDAEIAKMIIEKH  244 (285)
T ss_dssp             HTTSCBCSTT------TT-------GGGGTTTCHHHHHHHHHHH
T ss_pred             HHHcCCCCCC------CC-------hhhhhcCCHHHHHHHHHcC
Confidence            7777777665      22       2456667777777777766

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=1.3e-27  Score=265.23  Aligned_cols=252  Identities=15%  Similarity=0.122  Sum_probs=210.4

Q ss_pred             cccChHHHHHHHcCCcHHHHHHHHC-CCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHH
Q 001365          536 QQEAENCKWSCMFGEIEVPAEIVAG-GVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITS  614 (1092)
Q Consensus       536 ~~~~TpLH~A~~fG~veVv~~LL~~-Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL  614 (1092)
                      ..+.|+||+||..|+.++++.|+.. |++++  ..+..|.||||+||..|+    +..+++|++.|++++..|..|.|||
T Consensus        22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~--~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L   95 (351)
T 3utm_A           22 EYKKDELLEAARSGNEEKLMALLTPLNVNCH--ASDGRKSTPLHLAAGYNR----VRIVQLLLQHGADVHAKDKGGLVPL   95 (351)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCC--CSSTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             cccchhHHHHHHcCCHHHHHHHHHhcCCCcc--cCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCCccCCCCCcHH
Confidence            3457899999999999999888765 67755  567779999999999986    5556789999999999999999999


Q ss_pred             hh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHh
Q 001365          615 EN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKE  689 (1092)
Q Consensus       615 ~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~  689 (1092)
                      |.    ++.+++++|+. |++++..                      +..|+|||+.|+..+...               
T Consensus        96 ~~A~~~g~~~iv~~Ll~~g~~~~~~----------------------~~~g~t~L~~A~~~~~~~---------------  138 (351)
T 3utm_A           96 HNACSYGHYEVTELLLKHGACVNAM----------------------DLWQFTPLHEAASKNRVE---------------  138 (351)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCC----------------------CTTCCCHHHHHHHTTCHH---------------
T ss_pred             HHHHHCCCHHHHHHHHHCCCCCCCC----------------------CCCCCCHHHHHHHcCCHH---------------
Confidence            95    77888888855 6665443                      257899999998866543               


Q ss_pred             hhHHHHHHHHHhCCCCCCcccCCCCcHHHHH---------------------HHcCCHhHHHHHHHCCCCccccCCCCcc
Q 001365          690 KLQVWLVQKAAEGGKGPCVLDHCGQGVLHFA---------------------AALGYDWALEPTTVAGVNINFRDVNGWT  748 (1092)
Q Consensus       690 ~l~~~LvklLle~GadvN~~D~~G~TpLH~A---------------------A~~G~~~iVk~LL~~Gadin~~D~~G~T  748 (1092)
                           ++++|+++|++++..+..|.||||+|                     +..+..+.+..++..+......+..|+|
T Consensus       139 -----~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t  213 (351)
T 3utm_A          139 -----VCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET  213 (351)
T ss_dssp             -----HHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCC
T ss_pred             -----HHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCC
Confidence                 78899999999999999999998765                     5667778888888877776678889999


Q ss_pred             HHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCc
Q 001365          749 ALHWAAYC---GRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDV  825 (1092)
Q Consensus       749 pLH~Aa~~---G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~t  825 (1092)
                      |||+|+..   +..+++++|+++|+++|.      +|..|+||||+|+..|+.+++++|+++|     ++++.+|..|.|
T Consensus       214 ~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~n~~d~~g~t  282 (351)
T 3utm_A          214 ALHCAVASLHPKRKQVAELLLRKGANVNE------KNKDFMTPLHVAAERAHNDVMEVLHKHG-----AKMNALDSLGQT  282 (351)
T ss_dssp             HHHHHHHCCSTTHHHHHHHHHHTTCCTTC------CCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCC
T ss_pred             HHHHHHHHhCccHHHHHHHHHHcCCCcCC------cCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCCCCC
Confidence            99999999   558999999999999887      7799999999999999999999999998     789999999977


Q ss_pred             HHHHh-h----hhhccccccCCCCCC
Q 001365          826 AEVTG-A----TAVQTVPQRCPTPVS  846 (1092)
Q Consensus       826 a~iaa-~----~~v~~l~~~~as~~s  846 (1092)
                      +...+ .    ..++.|.+..+.+..
T Consensus       283 ~L~~A~~~~~~~~v~~Ll~~gad~~~  308 (351)
T 3utm_A          283 ALHRAALAGHLQTCRLLLSYGSDPSI  308 (351)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCC
Confidence            64333 3    456667777666554

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=7.7e-29  Score=269.15  Aligned_cols=223  Identities=13%  Similarity=0.094  Sum_probs=169.2

Q ss_pred             CCcccChHHHHHHHcCCcHHHHHHHH----CCCCCCCC--CCCCCCchHHHHHHHc---CCCchhHHHHHHHHhCCCCcc
Q 001365          534 MSQQEAENCKWSCMFGEIEVPAEIVA----GGVLRCHT--SSQKVGRVPFYVTCSN---RLSCSEVREFEYRASHIPDVD  604 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~veVv~~LL~----~Gadin~~--~~d~~G~TPLHlAa~n---g~~~seVv~fe~Ll~~Gadvn  604 (1092)
                      .+..+.||||+||..|++++++.||+    .|++++..  ..+..|+||||+||.+   |+  .+  .+++|+..|++++
T Consensus         9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~--~~--~v~~Ll~~ga~~~   84 (273)
T 2pnn_A            9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ--ND--TIALLLDVARKTD   84 (273)
T ss_dssp             --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTB--CH--HHHHHHHHHHHTT
T ss_pred             CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCC--hH--HHHHHHHhhcccc
Confidence            34567899999999999999998886    55554421  2367899999999986   53  34  4467888776543


Q ss_pred             cccCCCCcHHhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHH
Q 001365          605 VADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQ  684 (1092)
Q Consensus       605 a~D~~G~TpL~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~  684 (1092)
                      ..               ..++...  .                      ...+..|+||||.|+..+...          
T Consensus        85 ~~---------------~~~i~~~--~----------------------~~~d~~g~tpL~~A~~~g~~~----------  115 (273)
T 2pnn_A           85 SL---------------KQFVNAS--Y----------------------TDSYYKGQTALHIAIERRNMT----------  115 (273)
T ss_dssp             CH---------------HHHHTCC--C----------------------CSTTTTTCCHHHHHHHTTCHH----------
T ss_pred             ch---------------hHHhhcc--c----------------------ccccCCCCCHHHHHHHcCCHH----------
Confidence            21               0011000  0                      011257889999998876643          


Q ss_pred             HHHHhhhHHHHHHHHHhCCCCCCcccC--------------CCCcHHHHHHHcCCHhHHHHHHH---CCCCccccCCCCc
Q 001365          685 KLLKEKLQVWLVQKAAEGGKGPCVLDH--------------CGQGVLHFAAALGYDWALEPTTV---AGVNINFRDVNGW  747 (1092)
Q Consensus       685 ~a~k~~l~~~LvklLle~GadvN~~D~--------------~G~TpLH~AA~~G~~~iVk~LL~---~Gadin~~D~~G~  747 (1092)
                                ++++|+++|+++|.++.              .|.||||+||..|+.++|++||+   +|++++.+|..|+
T Consensus       116 ----------~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~  185 (273)
T 2pnn_A          116 ----------LVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN  185 (273)
T ss_dssp             ----------HHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSC
T ss_pred             ----------HHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCC
Confidence                      78889999999999997              79999999999999999999999   9999999999999


Q ss_pred             cHHHHHHHcCC---------HHHHHHHHHcCCCCCCCCC-CCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCc
Q 001365          748 TALHWAAYCGR---------ERTVASLIALGAAPGALSD-PTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAIS  817 (1092)
Q Consensus       748 TpLH~Aa~~G~---------~eiV~~LLe~GAdin~~~D-~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adln  817 (1092)
                      ||||+||..|+         .++|++|+++|+++|...+ ++.+|..|+||||+|+..|+.+++++|+++|+.    |..
T Consensus       186 tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~----dp~  261 (273)
T 2pnn_A          186 TVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH----EPE  261 (273)
T ss_dssp             CHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------
T ss_pred             cHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC----Cch
Confidence            99999999998         8999999999999874110 123789999999999999999999999999952    454


Q ss_pred             ccCCCC
Q 001365          818 LNKKDG  823 (1092)
Q Consensus       818 lkD~~G  823 (1092)
                      .....+
T Consensus       262 ~~~~~~  267 (273)
T 2pnn_A          262 CRHAAA  267 (273)
T ss_dssp             ------
T ss_pred             hhhhhh
Confidence            444443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.95  E-value=1.9e-28  Score=277.01  Aligned_cols=209  Identities=16%  Similarity=0.097  Sum_probs=177.8

Q ss_pred             CCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh----hHHHHHHHHhc-CCCCCCCCCCCCchh
Q 001365          568 SSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSD  642 (1092)
Q Consensus       568 ~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~----~~~~lvkLLl~-gadv~~~~~~~~~~~  642 (1092)
                      ..|..|.||||+||..|+    +..+++|++.|++++..|..|.||||+    ++.+++++|+. +++++.         
T Consensus        15 ~~d~~g~t~L~~Aa~~g~----~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---------   81 (364)
T 3ljn_A           15 KSDDENMEKIHVAARKGQ----TDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL---------   81 (364)
T ss_dssp             -CCHHHHHHHHHHHHHTC----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC---------
T ss_pred             ccCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc---------
Confidence            556779999999999986    555678999999999999999999995    77889988865 553321         


Q ss_pred             hHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhC----CCCCCc----------
Q 001365          643 ISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEG----GKGPCV----------  708 (1092)
Q Consensus       643 ~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~----GadvN~----------  708 (1092)
                                     ..|++||+.|+..++..                    ++++|++.    |++++.          
T Consensus        82 ---------------~~g~t~L~~A~~~g~~~--------------------~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  126 (364)
T 3ljn_A           82 ---------------WHGQKPIHLAVMANKTD--------------------LVVALVEGAKERGQMPESLLNECDEREV  126 (364)
T ss_dssp             ---------------BTTBCHHHHHHHTTCHH--------------------HHHHHHHHHHHHTCCHHHHHTCCCCCCE
T ss_pred             ---------------cCCCCHHHHHHHcCCHH--------------------HHHHHHHhccccCCCHHHHHhhcchHhh
Confidence                           36899999999877643                    55566665    777776          


Q ss_pred             -------ccCCCCcHHHHHHHcC--CHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 001365          709 -------LDHCGQGVLHFAAALG--YDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT  779 (1092)
Q Consensus       709 -------~D~~G~TpLH~AA~~G--~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n  779 (1092)
                             .|..|.||||+||..|  +.++|++|+++|++++.+|..|+||||+||..|+.++|++|+++|++.... +++
T Consensus       127 ~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~  205 (364)
T 3ljn_A          127 NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSL-RLD  205 (364)
T ss_dssp             EEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSC-CTT
T ss_pred             hhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccc-ccc
Confidence                   8999999999999999  999999999999999999999999999999999999999999999992221 234


Q ss_pred             CCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          780 PKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       780 ~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      .+|..|+||||+|+..|+.++|++|+++|     ++++.+|..|.|+...+
T Consensus       206 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----ad~~~~d~~g~tpL~~A  251 (364)
T 3ljn_A          206 YANKQGNSHLHWAILINWEDVAMRFVEMG-----IDVNMEDNEHTVPLYLS  251 (364)
T ss_dssp             CCCTTCCCTTHHHHTTTCHHHHHHHHTTT-----CCTTCCCTTSCCHHHHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHH
Confidence            48899999999999999999999999998     78999999997775444

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=3.3e-28  Score=262.69  Aligned_cols=215  Identities=14%  Similarity=0.063  Sum_probs=151.4

Q ss_pred             CCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCC----
Q 001365          534 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNC----  609 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~----  609 (1092)
                      .+..+.||||+||..|+.+++++|++.|++++  ..+..|+||||+||..|+    ...+++|+..|++.+.....    
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~~~~g~tpL~~A~~~~~----~~~v~~Ll~~~~~~~~~~~~~~~~  114 (282)
T 1oy3_D           41 QNDLGQTALHLAAILGEASTVEKLYAAGAGVL--VAERGGHTALHLACRVRA----HTCACVLLQPRPSHPRDASDTYLT  114 (282)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS--CCCTTSCCHHHHHTTTTC----HHHHHHHSSSCCSSCCCC------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCC----cchhHhhhccCCCCchhhHHHHhh
Confidence            34567899999999999999999999999977  567779999999999885    45557899998875443211    


Q ss_pred             ---------CCcHHhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHH
Q 001365          610 ---------GDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKE  680 (1092)
Q Consensus       610 ---------G~TpL~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~  680 (1092)
                               +.++++.....       ........         .+...-..+...+..|+||||.|+..+...      
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~------  172 (282)
T 1oy3_D          115 QSQDCTPDTSHAPAAVDSQP-------NPENEEEP---------RDEDWRLQLEAENYDGHTPLHVAVIHKDAE------  172 (282)
T ss_dssp             ---------------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHH------
T ss_pred             cccccCcchhcchhhhcccc-------ccchhhhh---------hhhhhhhcCCCcCCCCcCHHHHHHHcCCHH------
Confidence                     11111110000       00000000         000000112233578999999998876542      


Q ss_pred             HHHHHHHHhhhHHHHHHHHHhCCCCCCcccCC-CCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCH
Q 001365          681 KLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHC-GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRE  759 (1092)
Q Consensus       681 ~lL~~a~k~~l~~~LvklLle~GadvN~~D~~-G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~  759 (1092)
                                    ++++|+++|++++..+.. |+||||+|+..|+.++|++||++|++++.+|..|+||||+|+..|+.
T Consensus       173 --------------~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~  238 (282)
T 1oy3_D          173 --------------MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP  238 (282)
T ss_dssp             --------------HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCH
T ss_pred             --------------HHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCc
Confidence                          788899999999999865 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcC
Q 001365          760 RTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIG  796 (1092)
Q Consensus       760 eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G  796 (1092)
                      ++|++|+++||+++.      +|..|.|||++|....
T Consensus       239 ~~v~~Ll~~ga~~~~------~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          239 ILARLLRAHGAPEPE------DGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHHHHHHTTCCCCC------CC--------------
T ss_pred             HHHHHHHHcCCCcCc------CCCcccccccccCCcc
Confidence            999999999999987      7899999999998764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.95  E-value=6.6e-28  Score=252.97  Aligned_cols=190  Identities=22%  Similarity=0.251  Sum_probs=161.9

Q ss_pred             CCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCC-CCCCCchHHHHHHHcCCCchhHHHHHHHHhCC--CCcccccCCC
Q 001365          534 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTS-SQKVGRVPFYVTCSNRLSCSEVREFEYRASHI--PDVDVADNCG  610 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~-~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~G--advna~D~~G  610 (1092)
                      .+..+.||||+||..|+.+++++|++.|++.+... .+..|.||||+||..|+    +..+++|+..|  ++++..|..|
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~~~g  107 (228)
T 2dzn_A           32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN----LEVVKSLYDRPLKPDLNKITNQG  107 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCC----HHHHHHHHSSSSCCCTTCCCTTC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCC----HHHHHHHHhCCCCcccccCCcCC
Confidence            35567899999999999999999999996655555 67889999999999985    45557888888  6777666555


Q ss_pred             CcHHhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhh
Q 001365          611 DITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEK  690 (1092)
Q Consensus       611 ~TpL~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~  690 (1092)
                      .||||                                                  .|+..+...                
T Consensus       108 ~t~L~--------------------------------------------------~A~~~~~~~----------------  121 (228)
T 2dzn_A          108 VTCLH--------------------------------------------------LAVGKKWFE----------------  121 (228)
T ss_dssp             CCHHH--------------------------------------------------HHHHTTCHH----------------
T ss_pred             CCHHH--------------------------------------------------HHHHcCCHh----------------
Confidence            55555                                                  444333321                


Q ss_pred             hHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCC-CCccccCCCCccHHHHHHHcCCHHHHHHHH-Hc
Q 001365          691 LQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAG-VNINFRDVNGWTALHWAAYCGRERTVASLI-AL  768 (1092)
Q Consensus       691 l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~G-adin~~D~~G~TpLH~Aa~~G~~eiV~~LL-e~  768 (1092)
                          ++++|+++|++++.+|..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.++|++|+ ++
T Consensus       122 ----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~  197 (228)
T 2dzn_A          122 ----VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY  197 (228)
T ss_dssp             ----HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----HHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence                778899999999999999999999999999999999999999 999999999999999999999999999999 89


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 001365          769 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE  806 (1092)
Q Consensus       769 GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe  806 (1092)
                      |++++.      +|..|+||||+|+..   +++++|++
T Consensus       198 ga~~~~------~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          198 GAEYDL------VDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             CCCSCC------BCTTSCBGGGGCSST---THHHHHHT
T ss_pred             CCCCCc------cCCCCCcHHHHHHHH---HHHHHHHh
Confidence            999887      779999999999765   67777775

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=3.9e-27  Score=247.97  Aligned_cols=202  Identities=17%  Similarity=0.131  Sum_probs=175.5

Q ss_pred             CCchHHHHHHHcCCCchhHHHHHHHHhCCC-CcccccCCCCcHHhh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHH
Q 001365          572 VGRVPFYVTCSNRLSCSEVREFEYRASHIP-DVDVADNCGDITSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQ  645 (1092)
Q Consensus       572 ~G~TPLHlAa~ng~~~seVv~fe~Ll~~Ga-dvna~D~~G~TpL~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~  645 (1092)
                      .+.||||.||..|.    +..+++|+..+. .++..|..|.||||.    ++.+++++|+. +++++..           
T Consensus         5 ~~~~~l~~A~~~g~----~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-----------   69 (231)
T 3aji_A            5 VSNIMICNLAYSGK----LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-----------   69 (231)
T ss_dssp             CSSSHHHHHHHHTC----HHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-----------
T ss_pred             cccchHHHHHHhCC----HHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCc-----------
Confidence            47899999999986    444556665554 478889999999995    77788888754 6665443           


Q ss_pred             HHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCC
Q 001365          646 LNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGY  725 (1092)
Q Consensus       646 ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~  725 (1092)
                                 +..|+||||.|+..+...                    ++++|+++|++++.+|..|.||||+|+..|+
T Consensus        70 -----------~~~g~t~L~~A~~~~~~~--------------------~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  118 (231)
T 3aji_A           70 -----------DDAGWSPLHIAASAGXDE--------------------IVKALLVKGAHVNAVNQNGCTPLHYAASKNR  118 (231)
T ss_dssp             -----------CTTSCCHHHHHHHHTCHH--------------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             -----------CCCCCCHHHHHHHcCHHH--------------------HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence                       257899999998866542                    7888999999999999999999999999999


Q ss_pred             HhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Q 001365          726 DWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLA  805 (1092)
Q Consensus       726 ~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LL  805 (1092)
                      .+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.      +|..|.||||+|+..|+.+++++|+
T Consensus       119 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll  192 (231)
T 3aji_A          119 HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI------QDTEGNTPLHLACDEERVEEAKFLV  192 (231)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC------CCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc------cCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999887      7899999999999999999999999


Q ss_pred             HcCCCCCcccCcccCCCCCcHHHHh
Q 001365          806 ESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       806 e~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      ++|     ++++.+|..|.++...+
T Consensus       193 ~~g-----a~~~~~~~~g~t~l~~A  212 (231)
T 3aji_A          193 TQG-----ASIYIENKEEKTPLQVA  212 (231)
T ss_dssp             HTT-----CCSCCCCTTSCCHHHHS
T ss_pred             HCC-----CCCCCCCCCCCCHHHHH
Confidence            998     78999999997775443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.95  E-value=5.2e-28  Score=264.61  Aligned_cols=227  Identities=18%  Similarity=0.119  Sum_probs=190.5

Q ss_pred             HHHHcCCcHHHHHHHHCCCCCCCCC-------CCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh
Q 001365          544 WSCMFGEIEVPAEIVAGGVLRCHTS-------SQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN  616 (1092)
Q Consensus       544 ~A~~fG~veVv~~LL~~Gadin~~~-------~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~  616 (1092)
                      .++..|..+.++.++..+..+....       .+..|.||||+||..|+    +..+++|+..|+++|..|..|.||||.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~   79 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGD----TEEVLRLLERGADINYANVDGLTALHQ   79 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTC----HHHHHHHHHHCCCTTCBCTTCCBHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCC----HHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            4567777888888887766543211       13457899999999986    555678999999999999999999995


Q ss_pred             ----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhh
Q 001365          617 ----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKL  691 (1092)
Q Consensus       617 ----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l  691 (1092)
                          ++.+++++|+. |++++..                      +..|+||||.|+..+...                 
T Consensus        80 A~~~g~~~~v~~Ll~~ga~~~~~----------------------~~~g~tpL~~A~~~g~~~-----------------  120 (299)
T 1s70_B           80 ACIDDNVDMVKFLVENGANINQP----------------------DNEGWIPLHAAASCGYLD-----------------  120 (299)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCC----------------------CTTSCCHHHHHHHHTCHH-----------------
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCC----------------------CCCCCcHHHHHHHcCCHH-----------------
Confidence                77888888754 6666543                      257999999998876643                 


Q ss_pred             HHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHH-CCCCccc--------------------------cCC
Q 001365          692 QVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTV-AGVNINF--------------------------RDV  744 (1092)
Q Consensus       692 ~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~-~Gadin~--------------------------~D~  744 (1092)
                         ++++|+++|++++..|..|.||||+|+..|+.++++.|+. .|++++.                          .+.
T Consensus       121 ---~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  197 (299)
T 1s70_B          121 ---IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (299)
T ss_dssp             ---HHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             ---HHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcC
Confidence               7889999999999999999999999999999999987775 3665543                          567


Q ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCC
Q 001365          745 NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGD  824 (1092)
Q Consensus       745 ~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~  824 (1092)
                      .|+||||+||..|+.++|++|+++|+++|.      +|..|.||||+|+..|+.+++++|+++|     ++++++|..|.
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~------~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-----ad~~~~d~~g~  266 (299)
T 1s70_B          198 SGGTALHVAAAKGYTEVLKLLIQARYDVNI------KDYDGWTPLHAAAHWGKEEACRILVENL-----CDMEAVNKVGQ  266 (299)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTC------CCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSC
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHcCCCCCC------cCCCCCcHHHHHHhcCCHHHHHHHHHcC-----CCCCCcCCCCC
Confidence            899999999999999999999999999887      7899999999999999999999999998     78999999997


Q ss_pred             cHH
Q 001365          825 VAE  827 (1092)
Q Consensus       825 ta~  827 (1092)
                      ||.
T Consensus       267 t~l  269 (299)
T 1s70_B          267 TAF  269 (299)
T ss_dssp             CTT
T ss_pred             CHH
Confidence            653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.95  E-value=8.4e-28  Score=264.68  Aligned_cols=209  Identities=9%  Similarity=-0.041  Sum_probs=176.2

Q ss_pred             CCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh----hHHHHHHH
Q 001365          549 GEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN----LRMQFGKL  624 (1092)
Q Consensus       549 G~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~----~~~~lvkL  624 (1092)
                      ...++.++|...+  ++  ..|..|.||||+||..|+    +..+++|+..|++++..|  |.||||.    ++.+++++
T Consensus        11 ~~~~v~~lL~~~~--~~--~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~   80 (285)
T 3kea_A           11 KSKQLKSFLSSKD--TF--KADVHGHSASYYAIADNN----VRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKI   80 (285)
T ss_dssp             CHHHHHHHHHSTT--TT--CCCTTSCCHHHHHHHTTC----HHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHH
T ss_pred             CHHHHHHHHHhCC--CC--ccCCCCCCHHHHHHHcCC----HHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHH
Confidence            3345556555543  33  667889999999999986    555578999999999884  9999995    77788887


Q ss_pred             Hhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Q 001365          625 LCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGG  703 (1092)
Q Consensus       625 Ll~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~G  703 (1092)
                      |+. |++++..+                      ..|+||||.|+..+...                    ++++|+++|
T Consensus        81 Ll~~ga~~~~~d----------------------~~g~t~L~~A~~~g~~~--------------------~v~~Ll~~g  118 (285)
T 3kea_A           81 LLFSGLDDSQFD----------------------DKGNTALYYAVDSGNMQ--------------------TVKLFVKKN  118 (285)
T ss_dssp             HHHTTCCTTCCC----------------------TTSCCHHHHHHHTTCHH--------------------HHHHHHHHC
T ss_pred             HHHCCCCCCCcC----------------------CCCCcHHHHHHHcCCHH--------------------HHHHHHhcC
Confidence            754 77765432                      57999999998876543                    788899999


Q ss_pred             CCCCcccCCC-CcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 001365          704 KGPCVLDHCG-QGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKY  782 (1092)
Q Consensus       704 advN~~D~~G-~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D  782 (1092)
                      ++++.+|..| .||||+|+..|+.+++++|+++|+++... ..|+||||+|+..|+.++|++|+++|++++.      +|
T Consensus       119 a~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~------~~  191 (285)
T 3kea_A          119 WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNT------NN  191 (285)
T ss_dssp             GGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCT------TC
T ss_pred             CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCc------cc
Confidence            9999999999 79999999999999999999999987332 2899999999999999999999999999887      78


Q ss_pred             CCCCCH-HHHHHHcCcHHHHHHHHHcCCCCCcccCcccCC
Q 001365          783 PSGRTP-ADLASSIGHKGIAGYLAESDLSSALSAISLNKK  821 (1092)
Q Consensus       783 ~~G~TP-LhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~  821 (1092)
                      ..|+|| ||+|+..|+.+++++|+++|     ++++..|.
T Consensus       192 ~~g~t~~L~~A~~~~~~~~v~~Ll~~g-----ad~~~~~~  226 (285)
T 3kea_A          192 SLLFIPDIKLAIDNKDIEMLQALFKYD-----INIYSANL  226 (285)
T ss_dssp             CCBCCTTHHHHHHHTCHHHHHHHTTSC-----BCSTTTTG
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCh
Confidence            999998 99999999999999999998     67777763

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=7.4e-28  Score=258.83  Aligned_cols=210  Identities=12%  Similarity=-0.019  Sum_probs=165.7

Q ss_pred             ccChHHHHHHHcCCcHHHHHH----HHCCCCCCCCCC--CCCCchHHHHHH---HcCCCchhHHHHHHHHhCCCCccccc
Q 001365          537 QEAENCKWSCMFGEIEVPAEI----VAGGVLRCHTSS--QKVGRVPFYVTC---SNRLSCSEVREFEYRASHIPDVDVAD  607 (1092)
Q Consensus       537 ~~~TpLH~A~~fG~veVv~~L----L~~Gadin~~~~--d~~G~TPLHlAa---~ng~~~seVv~fe~Ll~~Gadvna~D  607 (1092)
                      .+.|+||.||..|+.++++.|    ++.|++++....  +..|.||||+|+   ..|+  .+++  ++|+..|++.+...
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~--~~~v--~~Ll~~g~~~~~~~   79 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR--NDTI--PILLDIAEKTGNMR   79 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTB--CTHH--HHHHHHHHHTTCHH
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCC--HHHH--HHHHHhcccccchH
Confidence            357899999999999955544    459998774432  367999999999   4454  4444  67787776543220


Q ss_pred             CCCCcHHhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHH
Q 001365          608 NCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLL  687 (1092)
Q Consensus       608 ~~G~TpL~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~  687 (1092)
                                     .++  ....                      ...+..|+||||.|+..++..             
T Consensus        80 ---------------~~~--~~~~----------------------~~~d~~g~t~L~~A~~~g~~~-------------  107 (260)
T 3jxi_A           80 ---------------EFI--NSPF----------------------RDVYYRGQTALHIAIERRCKH-------------  107 (260)
T ss_dssp             ---------------HHH--TCCB----------------------CCSSEESBCHHHHHHHTTCHH-------------
T ss_pred             ---------------hhh--cccc----------------------cccccCCCCHHHHHHHcCCHH-------------
Confidence                           011  0111                      111247899999998876643             


Q ss_pred             HhhhHHHHHHHHHhCCCCCCccc--------------CCCCcHHHHHHHcCCHhHHHHHHH---CCCCccccCCCCccHH
Q 001365          688 KEKLQVWLVQKAAEGGKGPCVLD--------------HCGQGVLHFAAALGYDWALEPTTV---AGVNINFRDVNGWTAL  750 (1092)
Q Consensus       688 k~~l~~~LvklLle~GadvN~~D--------------~~G~TpLH~AA~~G~~~iVk~LL~---~Gadin~~D~~G~TpL  750 (1092)
                             ++++|+++|+++|..|              ..|+||||+||..|+.++|++||+   +|++++.+|..|+|||
T Consensus       108 -------~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpL  180 (260)
T 3jxi_A          108 -------YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL  180 (260)
T ss_dssp             -------HHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH
T ss_pred             -------HHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHH
Confidence                   7889999999999998              689999999999999999999999   9999999999999999


Q ss_pred             HHHHHcCC---------HHHHHHHHHcCCCCCCCC-CCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          751 HWAAYCGR---------ERTVASLIALGAAPGALS-DPTPKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       751 H~Aa~~G~---------~eiV~~LLe~GAdin~~~-D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                      |+||..|+         .++|++|+++|++++... ..+.+|..|+||||+|+..|+.+++++|+++|.
T Consensus       181 h~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  249 (260)
T 3jxi_A          181 HALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI  249 (260)
T ss_dssp             HHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            99999888         799999999999984311 013488999999999999999999999999983

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.95  E-value=1.4e-26  Score=242.35  Aligned_cols=164  Identities=12%  Similarity=-0.024  Sum_probs=141.6

Q ss_pred             CCcccChHHHHHHHcCCcHHHHHHHHCCC-CCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCc
Q 001365          534 MSQQEAENCKWSCMFGEIEVPAEIVAGGV-LRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDI  612 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~veVv~~LL~~Ga-din~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~T  612 (1092)
                      .+..+.||||+||..|+.+++++|++.|. +++  ..+..|.||||+||..++    ...+++|+..|++++..|..|.|
T Consensus        54 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~g~t  127 (223)
T 2f8y_A           54 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLD--ARMHDGTTPLILAARLAV----EGMLEDLINSHADVNAVDDLGKS  127 (223)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTT--CCCTTCCCHHHHHHHHTC----HHHHHHHHHTTCCTTCBCTTSCB
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc--cCCCCCCcHHHHHHHhCc----HHHHHHHHHcCCCCcCcCCCCCc
Confidence            34567899999999999999999999987 544  567779999999999985    44557889999998888776666


Q ss_pred             HHhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhH
Q 001365          613 TSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQ  692 (1092)
Q Consensus       613 pL~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~  692 (1092)
                      |||                                                  .|+..+...                  
T Consensus       128 ~L~--------------------------------------------------~A~~~~~~~------------------  139 (223)
T 2f8y_A          128 ALH--------------------------------------------------WAAAVNNVD------------------  139 (223)
T ss_dssp             HHH--------------------------------------------------HHHHTTCHH------------------
T ss_pred             HHH--------------------------------------------------HHHHcCCHH------------------
Confidence            666                                                  333322221                  


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCC
Q 001365          693 VWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP  772 (1092)
Q Consensus       693 ~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdi  772 (1092)
                        ++++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+..
T Consensus       140 --~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          140 --AAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             --HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             --HHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence              778889999999999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             C
Q 001365          773 G  773 (1092)
Q Consensus       773 n  773 (1092)
                      .
T Consensus       218 ~  218 (223)
T 2f8y_A          218 S  218 (223)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.94  E-value=3.6e-26  Score=239.96  Aligned_cols=207  Identities=16%  Similarity=0.151  Sum_probs=179.8

Q ss_pred             CCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh----hHHHHHHHHhc-CCCCCCCCCCCCchh
Q 001365          568 SSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSD  642 (1092)
Q Consensus       568 ~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~----~~~~lvkLLl~-gadv~~~~~~~~~~~  642 (1092)
                      ..+..|.||||.||..|.    +..+++|++.|++++..+..|.||||.    ++.+++++|+. +++.+...       
T Consensus         4 ~~d~~~~~~l~~A~~~g~----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-------   72 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGI----YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG-------   72 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB-------
T ss_pred             ccccccchHHHHHHHcCC----hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhc-------
Confidence            346679999999999986    556688999999999999999999995    67788888755 55544332       


Q ss_pred             hHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHH
Q 001365          643 ISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAA  722 (1092)
Q Consensus       643 ~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~  722 (1092)
                                    +..+++||+.|+..+...                    ++++|++.|++++..|..|.||||+|+.
T Consensus        73 --------------~~~~~t~L~~A~~~~~~~--------------------~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  118 (240)
T 3eu9_A           73 --------------GDLNSTPLHWATRQGHLS--------------------MVVQLMKYGADPSLIDGEGCSCIHLAAQ  118 (240)
T ss_dssp             --------------TTTTBCHHHHHHHHTCHH--------------------HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             --------------CCcCCChhHHHHHcCCHH--------------------HHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence                          145889999988866542                    7788999999999999999999999999


Q ss_pred             cCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCC-HHHHHHHHHcCCCCCCCCCCCCCCC-CCCCHHHHHHHcCcHHH
Q 001365          723 LGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR-ERTVASLIALGAAPGALSDPTPKYP-SGRTPADLASSIGHKGI  800 (1092)
Q Consensus       723 ~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~-~eiV~~LLe~GAdin~~~D~n~~D~-~G~TPLhlAa~~G~~ei  800 (1092)
                      .|+.+++++|+++|++++.+|..|.||||+|+..++ .+++++|++.|++++.      .+. .|.||||+|+..|+.++
T Consensus       119 ~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~------~~~~~g~t~L~~A~~~~~~~~  192 (240)
T 3eu9_A          119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL------GDKYHKNTALHWAVLAGNTTV  192 (240)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTC------CCTTTCCCHHHHHHHHTCHHH
T ss_pred             cCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcch------hhccCCCcHHHHHHHcCCHHH
Confidence            999999999999999999999999999999997776 8999999999999987      555 89999999999999999


Q ss_pred             HHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          801 AGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       801 v~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      +++|+++|     ++++.+|..|.++...+
T Consensus       193 v~~Ll~~g-----~~~~~~~~~g~t~l~~A  217 (240)
T 3eu9_A          193 ISLLLEAG-----ANVDAQNIKGESALDLA  217 (240)
T ss_dssp             HHHHHHHT-----CCTTCBCTTSCBHHHHH
T ss_pred             HHHHHHcC-----CCCCCcCCCCCCHHHHH
Confidence            99999998     78999999997774433

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=9.1e-27  Score=255.49  Aligned_cols=195  Identities=15%  Similarity=0.072  Sum_probs=166.5

Q ss_pred             ChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCC-CcccccCCCCcHHhhh
Q 001365          539 AENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIP-DVDVADNCGDITSENL  617 (1092)
Q Consensus       539 ~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Ga-dvna~D~~G~TpL~~~  617 (1092)
                      .+++|.|+..|+++.++.|+..+.+......|..|.||||+||..|+    +..+++|+..|+ +++..|..|.||||..
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~----~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a  152 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHAN----FPVVQQLLDSGVCKVDKQNRAGYSPIMLT  152 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTC----HHHHHHHHHTSCCCTTCCCTTSCCHHHHG
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCC----HHHHHHHHHCCCCcCCCCCCCCCCHHHHH
Confidence            45889999999999999998877663333677889999999999986    455578999998 8999998888888832


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHH
Q 001365          618 RMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQ  697 (1092)
Q Consensus       618 ~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~Lvk  697 (1092)
                      ..                                                  ......             .  ...+++
T Consensus       153 ~~--------------------------------------------------~~~~~~-------------~--~~~~v~  167 (276)
T 4hbd_A          153 AL--------------------------------------------------ATLKTQ-------------D--DIETVL  167 (276)
T ss_dssp             GG--------------------------------------------------CCCCSH-------------H--HHHHHH
T ss_pred             HH--------------------------------------------------HHhhhh-------------h--hHHHHH
Confidence            10                                                  000000             0  011677


Q ss_pred             HHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHH-cCCCCCCCC
Q 001365          698 KAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIA-LGAAPGALS  776 (1092)
Q Consensus       698 lLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe-~GAdin~~~  776 (1092)
                      .|++.|.+++..|..|+||||+||..|+.++|++||++|+++|.+|..|+||||+||..|+.++|++||+ .|++++.  
T Consensus       168 ~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~--  245 (276)
T 4hbd_A          168 QLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISL--  245 (276)
T ss_dssp             HHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTC--
T ss_pred             HHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcC--
Confidence            7888999999999999999999999999999999999999999999999999999999999999999999 8999888  


Q ss_pred             CCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          777 DPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       777 D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                          +|..|+||||+|+..|+.+++++|++++
T Consensus       246 ----~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          246 ----TDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             ----CCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             ----cCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                7899999999999999999999999875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=3.8e-26  Score=235.03  Aligned_cols=108  Identities=26%  Similarity=0.310  Sum_probs=102.2

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      ++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.
T Consensus        83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  162 (192)
T 2rfm_A           83 IAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA  162 (192)
T ss_dssp             HHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            56677788999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          775 LSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       775 ~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                            +|..|.||||+|+..|+.+++++|++.|
T Consensus       163 ------~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          163 ------RDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             ------BCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ------cCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence                  7799999999999999999999999875

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=9.8e-26  Score=227.88  Aligned_cols=157  Identities=24%  Similarity=0.282  Sum_probs=137.1

Q ss_pred             ccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh
Q 001365          537 QEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN  616 (1092)
Q Consensus       537 ~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~  616 (1092)
                      ...++||+||..|+.+++++|++.|++++  ..+..|.||||+||..|+    +.                         
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~----~~-------------------------   61 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGADVN--AEDASGWTPLHLAAFNGH----LE-------------------------   61 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTC----HH-------------------------
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCC----HH-------------------------
Confidence            34678899999999999998888888866  556678888888887763    11                         


Q ss_pred             hHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHH
Q 001365          617 LRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLV  696 (1092)
Q Consensus       617 ~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~Lv  696 (1092)
                                                                                                    ++
T Consensus        62 ------------------------------------------------------------------------------~v   63 (169)
T 2y1l_E           62 ------------------------------------------------------------------------------IV   63 (169)
T ss_dssp             ------------------------------------------------------------------------------HH
T ss_pred             ------------------------------------------------------------------------------HH
Confidence                                                                                          34


Q ss_pred             HHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 001365          697 QKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS  776 (1092)
Q Consensus       697 klLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~  776 (1092)
                      ++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.  
T Consensus        64 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--  141 (169)
T 2y1l_E           64 EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA--  141 (169)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--
T ss_pred             HHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--
Confidence            456667788888889999999999999999999999999999999999999999999999999999999999999887  


Q ss_pred             CCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          777 DPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       777 D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                          +|..|.||||+|+..|+.+++++|++.|
T Consensus       142 ----~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          142 ----QDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             ----CCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             ----cCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence                7789999999999999999999999876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=5.8e-26  Score=226.31  Aligned_cols=109  Identities=27%  Similarity=0.340  Sum_probs=100.9

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCC-C
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP-G  773 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdi-n  773 (1092)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++. +
T Consensus        52 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  131 (162)
T 1ihb_A           52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG  131 (162)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC
Confidence            556677788889999999999999999999999999999999999999999999999999999999999999999984 5


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          774 ALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       774 ~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                      .      +|..|.||||+|+..|+.+++++|+++|+
T Consensus       132 ~------~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          132 H------RNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             C------CCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             C------cCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            5      78999999999999999999999999984

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=3.8e-26  Score=230.60  Aligned_cols=121  Identities=26%  Similarity=0.261  Sum_probs=102.7

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      ++++|+++|++++..|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.
T Consensus        51 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  130 (172)
T 3v30_A           51 TVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT  130 (172)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            44456666788888888999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH
Q 001365          775 LSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA  826 (1092)
Q Consensus       775 ~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta  826 (1092)
                            +|..|.||||+|+..|+.+++++|+++|     +++..++..|.+|
T Consensus       131 ------~~~~g~t~l~~A~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~p  171 (172)
T 3v30_A          131 ------EADSGYTPMDLAVALGYRKVQQVIENHI-----LKLFQSNLVPADP  171 (172)
T ss_dssp             ------CCTTSCCHHHHHHHHTCHHHHHHHHHHH-----HHHSCC-------
T ss_pred             ------cCCCCCCHHHHHHHhCcHHHHHHHHHHH-----HHHhcccCCCCCC
Confidence                  7789999999999999999999999988     5666666666554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=1.4e-25  Score=225.45  Aligned_cols=108  Identities=26%  Similarity=0.342  Sum_probs=99.9

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      ++++|+++|++++..|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.
T Consensus        51 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  130 (167)
T 3v31_A           51 VVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI  130 (167)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            44556677788888888999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          775 LSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       775 ~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                            +|..|.||||+|+..|+.+++++|++++
T Consensus       131 ------~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A          131 ------ETDSGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             ------CCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ------cCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence                  7789999999999999999999999977

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=2.2e-25  Score=227.13  Aligned_cols=168  Identities=17%  Similarity=0.152  Sum_probs=140.5

Q ss_pred             cccChHHHHHHHcCCcHHHHHHHHC-CCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHH
Q 001365          536 QQEAENCKWSCMFGEIEVPAEIVAG-GVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITS  614 (1092)
Q Consensus       536 ~~~~TpLH~A~~fG~veVv~~LL~~-Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL  614 (1092)
                      ++..++||+||..|+.++++.|++. +.+++  ..+..|.||||+||..|+    +.                       
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~--~~~~~g~t~L~~A~~~~~----~~-----------------------   53 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLN--QGDDHGFSPLHWACREGR----SA-----------------------   53 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTT--CCCTTSCCHHHHHHHTTC----HH-----------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCccccc--ccCCCCCCHHHHHHHcCc----HH-----------------------
Confidence            4457789999999999999998887 44544  556678899998887763    11                       


Q ss_pred             hhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHH
Q 001365          615 ENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVW  694 (1092)
Q Consensus       615 ~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~  694 (1092)
                                                                                                      
T Consensus        54 --------------------------------------------------------------------------------   53 (179)
T 3f6q_A           54 --------------------------------------------------------------------------------   53 (179)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      ++++|++.|++++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.
T Consensus        54 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  133 (179)
T 3f6q_A           54 VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI  133 (179)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch
Confidence            44556677888888888999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCC
Q 001365          775 LSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDG  823 (1092)
Q Consensus       775 ~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G  823 (1092)
                            +|..|.||||+|+..++.+++++|++.|     ++++..+..+
T Consensus       134 ------~~~~g~tpl~~A~~~~~~~~~~~L~~~g-----~~~~~~~~~~  171 (179)
T 3f6q_A          134 ------CNKYGEMPVDKAKAPLRELLRERAEKMG-----QNLNRIPYKD  171 (179)
T ss_dssp             ------CCTTSCCGGGGSCHHHHHHHHHHHHHTT-----CCCSCBCCCC
T ss_pred             ------hccCCCCcHHHHHHHHHHHHHHHHHHhh-----cCcccCCccc
Confidence                  7899999999999999999999999998     5666665544

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.93  E-value=5.6e-25  Score=232.01  Aligned_cols=178  Identities=18%  Similarity=0.121  Sum_probs=146.9

Q ss_pred             CCchHHHHHHHcCCCchhHHHHHHHHhC-CCCcccccCCCCcHHhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHH
Q 001365          572 VGRVPFYVTCSNRLSCSEVREFEYRASH-IPDVDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKI  650 (1092)
Q Consensus       572 ~G~TPLHlAa~ng~~~seVv~fe~Ll~~-Gadvna~D~~G~TpL~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I  650 (1092)
                      .|.||||+||..|+    +..+++|+.. |++++.+|..|.||||                                   
T Consensus         2 ~g~t~L~~A~~~g~----~~~v~~Ll~~~g~~~~~~~~~g~t~L~-----------------------------------   42 (232)
T 2rfa_A            2 IWESPLLLAAKEND----VQALSKLLKFEGCEVHQRGAMGETALH-----------------------------------   42 (232)
T ss_dssp             CTTCHHHHHHHTTC----HHHHHHHHTTTCSCTTCCCTTSCCHHH-----------------------------------
T ss_pred             CCCCHHHHHHHcCC----HHHHHHHHHhcCCCcccCCCCCCCHHH-----------------------------------
Confidence            48999999999986    5555677876 8888888777776666                                   


Q ss_pred             hhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCC-----CcccCCCCcHHHHHHHcCC
Q 001365          651 SSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGP-----CVLDHCGQGVLHFAAALGY  725 (1092)
Q Consensus       651 ~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~Gadv-----N~~D~~G~TpLH~AA~~G~  725 (1092)
                                     .|+..+...                    ++++|++.|+++     +..|..|.||||+|+..|+
T Consensus        43 ---------------~A~~~g~~~--------------------~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~   87 (232)
T 2rfa_A           43 ---------------IAALYDNLE--------------------AAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQN   87 (232)
T ss_dssp             ---------------HHHHTTCHH--------------------HHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTC
T ss_pred             ---------------HHHHcCCHH--------------------HHHHHHHcCchhccccccccCCCCcCHHHHHHHcCC
Confidence                           333333221                    566677777776     6778899999999999999


Q ss_pred             HhHHHHHHHCCCCccccCC-------------CCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHH
Q 001365          726 DWALEPTTVAGVNINFRDV-------------NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLA  792 (1092)
Q Consensus       726 ~~iVk~LL~~Gadin~~D~-------------~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlA  792 (1092)
                      .++|++|+++|++++.++.             .|+||||+||..|+.++|++|+++|++++.      +|..|+||||+|
T Consensus        88 ~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------~d~~g~t~L~~A  161 (232)
T 2rfa_A           88 VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA------QDSLGNTVLHIL  161 (232)
T ss_dssp             HHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHH
T ss_pred             HHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHH
Confidence            9999999999999999876             799999999999999999999999999887      789999999999


Q ss_pred             HHcCcHHHH----HHHHHcCCCCCcccC-cccCCCCCcHHHH
Q 001365          793 SSIGHKGIA----GYLAESDLSSALSAI-SLNKKDGDVAEVT  829 (1092)
Q Consensus       793 a~~G~~eiv----~~LLe~Ga~~h~adl-nlkD~~G~ta~ia  829 (1092)
                      +..|+.+++    ++|+++|+......+ +.+|..|.|+...
T Consensus       162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~  203 (232)
T 2rfa_A          162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKL  203 (232)
T ss_dssp             HTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHH
Confidence            999999988    999999965433333 6889999776433

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=7.2e-25  Score=217.64  Aligned_cols=150  Identities=21%  Similarity=0.231  Sum_probs=133.1

Q ss_pred             ChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhhhH
Q 001365          539 AENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLR  618 (1092)
Q Consensus       539 ~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~~~  618 (1092)
                      .|+||+||..|+.+++++|++.|++++   .+..|.||||+||..|+    +.                           
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~----~~---------------------------   48 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGH----FS---------------------------   48 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTC----HH---------------------------
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCC----HH---------------------------
Confidence            479999999999999999999998765   46679999999998764    11                           


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHH
Q 001365          619 MQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQK  698 (1092)
Q Consensus       619 ~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~Lvkl  698 (1092)
                                                                                                  ++++
T Consensus        49 ----------------------------------------------------------------------------~v~~   52 (153)
T 1awc_B           49 ----------------------------------------------------------------------------TTEV   52 (153)
T ss_dssp             ----------------------------------------------------------------------------HHHH
T ss_pred             ----------------------------------------------------------------------------HHHH
Confidence                                                                                        3444


Q ss_pred             HHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 001365          699 AAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDP  778 (1092)
Q Consensus       699 Lle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~  778 (1092)
                      |++.|++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.    
T Consensus        53 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----  128 (153)
T 1awc_B           53 LLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT----  128 (153)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC----
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc----
Confidence            5666778888888999999999999999999999999999999999999999999999999999999999999887    


Q ss_pred             CCCCCCCCCHHHHHHHcCcHHHHHHH
Q 001365          779 TPKYPSGRTPADLASSIGHKGIAGYL  804 (1092)
Q Consensus       779 n~~D~~G~TPLhlAa~~G~~eiv~~L  804 (1092)
                        +|..|.||||+|+..|+.+++++|
T Consensus       129 --~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          129 --QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             --CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             --cCCCCCCHHHHHHHcCCHHHHHHh
Confidence              778999999999999999999987

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.92  E-value=1e-25  Score=253.03  Aligned_cols=194  Identities=14%  Similarity=0.002  Sum_probs=134.9

Q ss_pred             hHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhhhHH
Q 001365          540 ENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRM  619 (1092)
Q Consensus       540 TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~~~~  619 (1092)
                      +.+|+|+..+..++++.|++.|+++|. +.+..|+||||+||..|+    +..+++|++.|++++.+|..|.||||+.  
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~-~~d~~g~TpLh~Aa~~g~----~~~v~~Ll~~Gad~n~~d~~g~TpLh~A--  171 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNLNI-PVDEHGNTPLHWLTSIAN----LELVKHLVKHGSNRLYGDNMGESCLVKA--  171 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCSCS-CCSTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTBCCTTCCCHHHHH--
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCccc-ccCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCcCCCCCCHHHHH--
Confidence            467899999999999999999999884 267789999999999986    4555789999999999988888888832  


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcC---CChHHHHHHHHHHHHHhhhHHHHH
Q 001365          620 QFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEK---FSSEEVKEKLVQKLLKEKLQVWLV  696 (1092)
Q Consensus       620 ~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~---~s~~~~~~~lL~~a~k~~l~~~Lv  696 (1092)
                                                                      +..++   ..                    ++
T Consensus       172 ------------------------------------------------~~~g~~~~~~--------------------~~  183 (327)
T 1sw6_A          172 ------------------------------------------------VKSVNNYDSG--------------------TF  183 (327)
T ss_dssp             ------------------------------------------------HHSSHHHHTT--------------------CH
T ss_pred             ------------------------------------------------HHhcccccHH--------------------HH
Confidence                                                            11111   00                    11


Q ss_pred             HHHHhCC-CCCCcccCCCCcHHHHHHH----cCCHhHHHHHHHC--------------------CCCccccCCCCccHHH
Q 001365          697 QKAAEGG-KGPCVLDHCGQGVLHFAAA----LGYDWALEPTTVA--------------------GVNINFRDVNGWTALH  751 (1092)
Q Consensus       697 klLle~G-advN~~D~~G~TpLH~AA~----~G~~~iVk~LL~~--------------------Gadin~~D~~G~TpLH  751 (1092)
                      +.|++.+ ++++.+|..|+||||+||.    .|+.+++++|++.                    |++++.+|..|+||||
T Consensus       184 ~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~  263 (327)
T 1sw6_A          184 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSIL  263 (327)
T ss_dssp             HHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHH
T ss_pred             HHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhH
Confidence            2222222 4677888888888888888    7888888888876                    7888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHH
Q 001365          752 WAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAE  827 (1092)
Q Consensus       752 ~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~  827 (1092)
                      +|+.      |++|+++  ++|.      +|..|+||||+|+..|+.++|++|+++|     ++++++|..|.||.
T Consensus       264 ~a~~------~~~Ll~~--~~n~------~d~~G~TpLh~A~~~g~~~~v~~Ll~~G-----ad~~~~d~~G~TpL  320 (327)
T 1sw6_A          264 ENLD------LKWIIAN--MLNA------QDSNGDTCLNIAARLGNISIVDALLDYG-----ADPFIANKSGLRPV  320 (327)
T ss_dssp             HHCS------HHHHHHH--TTTC------CCTTSCCHHHHHHHHCCHHHHHHHHHTT-----CCTTCCCTTSCCGG
T ss_pred             HHHH------HHHHHHh--CCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCcccCCCCCCHH
Confidence            8875      7888877  3444      6788888888888888888888888877     67888888886654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.92  E-value=4.9e-25  Score=220.95  Aligned_cols=108  Identities=29%  Similarity=0.307  Sum_probs=98.6

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      ++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.
T Consensus        57 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  136 (165)
T 3twr_A           57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK  136 (165)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence            45556777888888999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          775 LSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       775 ~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                            +|..|.||||+|+. |+.+++++|+++|+
T Consensus       137 ------~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          137 ------KNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             ------CCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             ------cCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence                  78999999999877 89999999999883

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.92  E-value=2e-25  Score=236.77  Aligned_cols=138  Identities=24%  Similarity=0.272  Sum_probs=121.3

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCC------ccccCCCCccHHHHHHHcCCHHHHHHHHHc
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVN------INFRDVNGWTALHWAAYCGRERTVASLIAL  768 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gad------in~~D~~G~TpLH~Aa~~G~~eiV~~LLe~  768 (1092)
                      ++++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++      ++..|..|+||||+||..|+.++|++|+++
T Consensus        60 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  139 (236)
T 1ikn_D           60 IAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL  139 (236)
T ss_dssp             HHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            77889999999999999999999999999999999999999986      577889999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCC-CCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHH-HHhh----hhhccccccCC
Q 001365          769 GAAPGALSDPTPKYP-SGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAE-VTGA----TAVQTVPQRCP  842 (1092)
Q Consensus       769 GAdin~~~D~n~~D~-~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~-iaa~----~~v~~l~~~~a  842 (1092)
                      |++++.      ++. .|.||||+|+..|+.+++++|+++|     ++++.+|..|.++. ++..    ..++.|.+..+
T Consensus       140 g~~~~~------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga  208 (236)
T 1ikn_D          140 GADVNA------QEPCNGRTALHLAVDLQNPDLVSLLLKCG-----ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  208 (236)
T ss_dssp             TCCTTC------CCTTTCCCHHHHHHHTTCHHHHHHHHTTT-----CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             CCCCCC------CCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCcccCCCCCHHHHHHccCchHHHHHHHHcch
Confidence            999987      666 9999999999999999999999998     78999999996663 3322    34445555554


Q ss_pred             C
Q 001365          843 T  843 (1092)
Q Consensus       843 s  843 (1092)
                      .
T Consensus       209 ~  209 (236)
T 1ikn_D          209 E  209 (236)
T ss_dssp             G
T ss_pred             h
Confidence            3

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.92  E-value=1.2e-24  Score=222.90  Aligned_cols=124  Identities=31%  Similarity=0.375  Sum_probs=118.5

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      +++.|+++|++||.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+||..|+.++|++||++|+++|.
T Consensus        19 ~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~   98 (169)
T 4gpm_A           19 RVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNA   98 (169)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHH
Q 001365          775 LSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVT  829 (1092)
Q Consensus       775 ~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~ia  829 (1092)
                            +|..|+||||+|+..|+.++|++|+++|     ++++.+|..|.||...
T Consensus        99 ------~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-----ad~~~~d~~G~TpL~~  142 (169)
T 4gpm_A           99 ------KDSDGRTPLHHAAENGHKEVVKLLISKG-----ADVNTSDSDGRTPLDL  142 (169)
T ss_dssp             ------CCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHH
T ss_pred             ------CCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCccccCCCCCCHHHH
Confidence                  7899999999999999999999999998     7899999999776443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.92  E-value=9.1e-25  Score=234.52  Aligned_cols=176  Identities=15%  Similarity=0.059  Sum_probs=143.5

Q ss_pred             CCchHHHHHHHcCCCchhHH--HHHHHHhCCCCccc----ccCCCCcHHhhhHHHHHHHHhcCCCCCCCCCCCCchhhHH
Q 001365          572 VGRVPFYVTCSNRLSCSEVR--EFEYRASHIPDVDV----ADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQ  645 (1092)
Q Consensus       572 ~G~TPLHlAa~ng~~~seVv--~fe~Ll~~Gadvna----~D~~G~TpL~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~  645 (1092)
                      .|+||||+||..|+  .+++  .+++|+..|++++.    .|..|.||||                              
T Consensus         1 ~G~t~L~~A~~~g~--~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~------------------------------   48 (256)
T 2etb_A            1 FDRDRLFSVVSRGV--PEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLM------------------------------   48 (256)
T ss_dssp             CCHHHHHHHHHHTC--GGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHH------------------------------
T ss_pred             CCccHHHHHHHcCC--HHHHHHHHHHHHHcCCCcccccccCCCCCCCHHH------------------------------
Confidence            38999999999986  3322  45778888888887    5666666665                              


Q ss_pred             HHHHHhhhhccCCCcchHHHHhhhh---cCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCC-----------cccC
Q 001365          646 LNSKISSLLKDENDDWDLMLKLTAE---EKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPC-----------VLDH  711 (1092)
Q Consensus       646 ll~~I~~Ll~~d~~g~t~L~~a~~~---~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN-----------~~D~  711 (1092)
                                          .|+..   +...                    ++++|++.|++++           ..|.
T Consensus        49 --------------------~A~~~~~~g~~~--------------------~v~~Ll~~g~~~~~~~~~~~~~~~~~d~   88 (256)
T 2etb_A           49 --------------------KAVLNLQDGVNA--------------------CIMPLLQIDKDSGNPKPLVNAQCTDEFY   88 (256)
T ss_dssp             --------------------HHHHTCBTTBCT--------------------THHHHHHHHHHTTCSSCGGGCCCCSTTT
T ss_pred             --------------------HHHHccccchHH--------------------HHHHHHhcCCcccchhhhcccccccccc
Confidence                                33333   3332                    4555556565554           2447


Q ss_pred             CCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCC-------------CccHHHHHHHcCCHHHHHHHHH---cCCCCCCC
Q 001365          712 CGQGVLHFAAALGYDWALEPTTVAGVNINFRDVN-------------GWTALHWAAYCGRERTVASLIA---LGAAPGAL  775 (1092)
Q Consensus       712 ~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~-------------G~TpLH~Aa~~G~~eiV~~LLe---~GAdin~~  775 (1092)
                      .|.||||+||..|+.++|++|+++|++++.+|..             |+||||+||..|+.++|++|++   +|+++|. 
T Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~-  167 (256)
T 2etb_A           89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA-  167 (256)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC-
T ss_pred             cCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCc-
Confidence            8999999999999999999999999999999987             9999999999999999999999   9999887 


Q ss_pred             CCCCCCCCCCCCHHHHHHH--cCcHH-------HHHHHHHcCCCCCcccC-------cccCCCCCcHHHHh
Q 001365          776 SDPTPKYPSGRTPADLASS--IGHKG-------IAGYLAESDLSSALSAI-------SLNKKDGDVAEVTG  830 (1092)
Q Consensus       776 ~D~n~~D~~G~TPLhlAa~--~G~~e-------iv~~LLe~Ga~~h~adl-------nlkD~~G~ta~iaa  830 (1092)
                           +|..|+||||+|+.  .++.+       ++++|+++|     +++       +.+|..|.|+...+
T Consensus       168 -----~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-----a~~~~~~~~~~~~d~~g~tpL~~A  228 (256)
T 2etb_A          168 -----TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-----ARLCPTVQLEEISNHQGLTPLKLA  228 (256)
T ss_dssp             -----CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-----HHHSTTCCGGGCCCTTSCCHHHHH
T ss_pred             -----cCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-----CCcccccccccccCCCCCCHHHHH
Confidence                 78999999999999  88888       999999998     677       89999997764433

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=2.8e-24  Score=213.09  Aligned_cols=106  Identities=25%  Similarity=0.303  Sum_probs=98.8

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      +++.|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+||..|+.++|++|+++ ++++.
T Consensus        50 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~  128 (156)
T 1bd8_A           50 IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR  128 (156)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC
Confidence            45567778889999999999999999999999999999999999999999999999999999999999999998 87776


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 001365          775 LSDPTPKYPSGRTPADLASSIGHKGIAGYLAES  807 (1092)
Q Consensus       775 ~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~  807 (1092)
                            +|..|.||||+|+..|+.+++++|+++
T Consensus       129 ------~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          129 ------RDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             ------CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ------cCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence                  789999999999999999999999974

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.92  E-value=1.3e-25  Score=252.26  Aligned_cols=192  Identities=17%  Similarity=0.173  Sum_probs=131.7

Q ss_pred             CCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCC-CCcccccCCCCc
Q 001365          534 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHI-PDVDVADNCGDI  612 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~G-advna~D~~G~T  612 (1092)
                      .+..+.||||+||..|+.++|++||+.|++++  ..+..|+||||+||.+|+ +..+..++.|+..+ ++++.+|..|.|
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n--~~d~~g~TpLh~A~~~g~-~~~~~~~~~ll~~~~~~~~~~d~~g~t  203 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRL--YGDNMGESCLVKAVKSVN-NYDSGTFEALLDYLYPCLILEDSMNRT  203 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--BCCTTCCCHHHHHHHSSH-HHHTTCHHHHHHHHGGGGGEECTTCCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHhcc-cccHHHHHHHHHhhhccccCCCCCCCC
Confidence            45678999999999999999999999999987  667789999999999873 11112223445554 679999999999


Q ss_pred             HHhhh--------HHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHH
Q 001365          613 TSENL--------RMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQ  684 (1092)
Q Consensus       613 pL~~~--------~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~  684 (1092)
                      |||+.        +.+++++|+...                     ..++.          .   .....          
T Consensus       204 pLh~A~~~~~~~g~~~~v~~Ll~~~---------------------~~~~~----------~---~~~~~----------  239 (327)
T 1sw6_A          204 ILHHIIITSGMTGCSAAAKYYLDIL---------------------MGWIV----------K---KQNRP----------  239 (327)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHH---------------------HHHHH----------H---GGGCC----------
T ss_pred             HHHHHHHHccccccHHHHHHHHHHH---------------------HHHHh----------c---ccchH----------
Confidence            99953        334444433200                     00000          0   00000          


Q ss_pred             HHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHH
Q 001365          685 KLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVAS  764 (1092)
Q Consensus       685 ~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~  764 (1092)
                                +...+...|+++|.+|..|.||||+|+.      +++|+++  ++|.+|..|+||||+||..|+.++|++
T Consensus       240 ----------i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~  301 (327)
T 1sw6_A          240 ----------IQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDA  301 (327)
T ss_dssp             ----------EEEC----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred             ----------HHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence                      1112345589999999999999999995      9999998  688999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcC
Q 001365          765 LIALGAAPGALSDPTPKYPSGRTPADLASSIG  796 (1092)
Q Consensus       765 LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G  796 (1092)
                      ||++||++++      +|..|+||||+|+.+|
T Consensus       302 Ll~~Gad~~~------~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          302 LLDYGADPFI------ANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHTTCCTTC------CCTTSCCGGGGTCC--
T ss_pred             HHHcCCCCcc------cCCCCCCHHHHHHhcC
Confidence            9999999988      7899999999998765

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.91  E-value=1.2e-23  Score=216.50  Aligned_cols=173  Identities=17%  Similarity=0.120  Sum_probs=146.1

Q ss_pred             CCCchHHHHHHHcCCCchhHHHHHHHHhCCC-CcccccCCCCcHHhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHH
Q 001365          571 KVGRVPFYVTCSNRLSCSEVREFEYRASHIP-DVDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSK  649 (1092)
Q Consensus       571 ~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Ga-dvna~D~~G~TpL~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~  649 (1092)
                      ..|.||||.||..|.    +..+++|+..+. +++..|..|.||||                                  
T Consensus         3 ~~~~~~L~~A~~~g~----~~~v~~ll~~~~~~~~~~~~~g~t~L~----------------------------------   44 (201)
T 3hra_A            3 TYEVGALLEAANQRD----TKKVKEILQDTTYQVDEVDTEGNTPLN----------------------------------   44 (201)
T ss_dssp             CCCTTHHHHHHHTTC----HHHHHHHHTCTTCCTTCCCTTSCCHHH----------------------------------
T ss_pred             cccccHHHHHHHhcc----HHHHHHHHHcCCCCCCCCCCCCCCHHH----------------------------------
Confidence            458999999999985    344445555554 77776655555554                                  


Q ss_pred             HhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHH
Q 001365          650 ISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWAL  729 (1092)
Q Consensus       650 I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iV  729 (1092)
                                      .|+..+...                    ++++|+++|++++..|..|.||||+|+..|+.+++
T Consensus        45 ----------------~A~~~~~~~--------------------~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~   88 (201)
T 3hra_A           45 ----------------IAVHNNDIE--------------------IAKALIDRGADINLQNSISDSPYLYAGAQGRTEIL   88 (201)
T ss_dssp             ----------------HHHHHTCHH--------------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ----------------HHHHcCCHH--------------------HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence                            444433321                    78889999999999999999999999999999999


Q ss_pred             HHHH-HCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCCCCCCCHHHHHHHcCc-----HHHHH
Q 001365          730 EPTT-VAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG-AAPGALSDPTPKYPSGRTPADLASSIGH-----KGIAG  802 (1092)
Q Consensus       730 k~LL-~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~G-Adin~~~D~n~~D~~G~TPLhlAa~~G~-----~eiv~  802 (1092)
                      ++|+ ..+++++.+|..|+||||+|+..|+.++|++|+++| ++++.      +|..|+||||+|+..+.     .++++
T Consensus        89 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~------~~~~g~t~L~~A~~~~~~~~~~~~~v~  162 (201)
T 3hra_A           89 AYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF------QNDFGYTALIEAVGLREGNQLYQDIVK  162 (201)
T ss_dssp             HHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTC------CCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred             HHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCC------CCCCCCCHHHHHHHhccchhhHHHHHH
Confidence            9999 678899999999999999999999999999999999 88877      78999999999999987     99999


Q ss_pred             HHHHcCCCCCcccCcccCCCCCcHHH
Q 001365          803 YLAESDLSSALSAISLNKKDGDVAEV  828 (1092)
Q Consensus       803 ~LLe~Ga~~h~adlnlkD~~G~ta~i  828 (1092)
                      +|+++|     ++++.+|..|.|+..
T Consensus       163 ~Ll~~g-----a~~~~~~~~g~t~l~  183 (201)
T 3hra_A          163 LLMENG-----ADQSIKDNSGRTAMD  183 (201)
T ss_dssp             HHHHTT-----CCTTCCCTTSCCHHH
T ss_pred             HHHHCC-----CCCCccCCCCCCHHH
Confidence            999998     789999999977643

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.91  E-value=2.3e-24  Score=233.87  Aligned_cols=191  Identities=13%  Similarity=0.073  Sum_probs=147.0

Q ss_pred             CCcccChHHHHHHHc---CCcHHHHHHHHCCCCC-------C--CCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCC
Q 001365          534 MSQQEAENCKWSCMF---GEIEVPAEIVAGGVLR-------C--HTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIP  601 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~f---G~veVv~~LL~~Gadi-------n--~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Ga  601 (1092)
                      .+..+.||||+||.+   |+.+++++||+.|++.       +  ....+..|.||||+||..|+    +..+++|++.|+
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll~~ga  125 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN----MTLVTLLVENGA  125 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTC----HHHHHHHHHTTC
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCC----HHHHHHHHHCCC
Confidence            355688999999998   9999999999998642       2  22345689999999999986    445578999999


Q ss_pred             CcccccCCCCcHHhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHH
Q 001365          602 DVDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEK  681 (1092)
Q Consensus       602 dvna~D~~G~TpL~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~  681 (1092)
                      +++..+..+..              ...+.                      ...+..|+||||.|+..+...       
T Consensus       126 ~~~~~~~~~~~--------------~~~~~----------------------~~~~~~g~tpL~~A~~~g~~~-------  162 (273)
T 2pnn_A          126 DVQAAANGDFF--------------KKTKG----------------------RPGFYFGELPLSLAACTNQLA-------  162 (273)
T ss_dssp             CTTCCBCSGGG--------------SSCSS----------------------SCCCCSCBSHHHHHHHTTCHH-------
T ss_pred             CcCcccccccc--------------ccccc----------------------cccccCCCCHHHHHHHcCCHH-------
Confidence            99998765410              00000                      112357999999998876543       


Q ss_pred             HHHHHHHhhhHHHHHHHHHh---CCCCCCcccCCCCcHHHHHHHcCC---------HhHHHHHHHCCCCcc-------cc
Q 001365          682 LVQKLLKEKLQVWLVQKAAE---GGKGPCVLDHCGQGVLHFAAALGY---------DWALEPTTVAGVNIN-------FR  742 (1092)
Q Consensus       682 lL~~a~k~~l~~~LvklLle---~GadvN~~D~~G~TpLH~AA~~G~---------~~iVk~LL~~Gadin-------~~  742 (1092)
                                   ++++|++   +|+++|.+|..|+||||+||..|+         .++|++|+++|+++|       .+
T Consensus       163 -------------~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~  229 (273)
T 2pnn_A          163 -------------IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEIT  229 (273)
T ss_dssp             -------------HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCC
T ss_pred             -------------HHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccccccccc
Confidence                         7889999   999999999999999999999998         899999999999997       48


Q ss_pred             CCCCccHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCCCCCCCHHH
Q 001365          743 DVNGWTALHWAAYCGRERTVASLIALGA-APGALSDPTPKYPSGRTPAD  790 (1092)
Q Consensus       743 D~~G~TpLH~Aa~~G~~eiV~~LLe~GA-din~~~D~n~~D~~G~TPLh  790 (1092)
                      |..|+||||+|+..|+.++|++||++|| |+..      ....+.+|-|
T Consensus       230 d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~------~~~~~~~~~~  272 (273)
T 2pnn_A          230 NRKGLTPLALAASSGKIGVLAYILQREIHEPEC------RHAAAHHHHH  272 (273)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------------
T ss_pred             CCCCCCHHHHHHHhChHHHHHHHHHCCCCCchh------hhhhhhhccC
Confidence            9999999999999999999999999999 5544      5566666543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.90  E-value=1.2e-24  Score=232.89  Aligned_cols=116  Identities=29%  Similarity=0.322  Sum_probs=105.5

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      +++.|++.|+++|.+|..|+||||+||..|+.++|++||++|+++|.+|..|+||||+||..|+.++|++|+++|++++.
T Consensus        52 ~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~  131 (239)
T 1ycs_B           52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA  131 (239)
T ss_dssp             HHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcce
Confidence            55667788889999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCCCCCC-CHHHHH--HHcCcHHHHHHHHHcCCCCCcccCcccCC
Q 001365          775 LSDPTPKYPSGR-TPADLA--SSIGHKGIAGYLAESDLSSALSAISLNKK  821 (1092)
Q Consensus       775 ~~D~n~~D~~G~-TPLhlA--a~~G~~eiv~~LLe~Ga~~h~adlnlkD~  821 (1092)
                            +|..|. ||||+|  +..|+.+++++|+++|     +++++.+.
T Consensus       132 ------~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~-----a~~~~~~~  170 (239)
T 1ycs_B          132 ------MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ-----EKMGIMNK  170 (239)
T ss_dssp             ------CCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH-----HHTTTTGG
T ss_pred             ------ecCCCCcchHHHHHHhhhccHHHHHHHHHhh-----hccccccc
Confidence                  566666 999999  8889999999999988     56666544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.90  E-value=1.9e-23  Score=224.51  Aligned_cols=116  Identities=18%  Similarity=0.095  Sum_probs=104.4

Q ss_pred             CCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccC--------------CCCccHHHHHHHcCCHHHHHHHHH--
Q 001365          704 KGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRD--------------VNGWTALHWAAYCGRERTVASLIA--  767 (1092)
Q Consensus       704 advN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D--------------~~G~TpLH~Aa~~G~~eiV~~LLe--  767 (1092)
                      .+++..|..|+||||+||..|+.++|++||++|++++.+|              ..|+||||+||..|+.++|++|++  
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  163 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG  163 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            4456667799999999999999999999999999999999              689999999999999999999999  


Q ss_pred             -cCCCCCCCCCCCCCCCCCCCHHHHHHHcCc---------HHHHHHHHHcCCCCCcccC-------cccCCCCCcHHHHh
Q 001365          768 -LGAAPGALSDPTPKYPSGRTPADLASSIGH---------KGIAGYLAESDLSSALSAI-------SLNKKDGDVAEVTG  830 (1092)
Q Consensus       768 -~GAdin~~~D~n~~D~~G~TPLhlAa~~G~---------~eiv~~LLe~Ga~~h~adl-------nlkD~~G~ta~iaa  830 (1092)
                       +|++++.      +|..|+||||+|+..|+         .+++++|+++|     +++       +++|..|.|+...+
T Consensus       164 ~~ga~~~~------~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-----a~~~~~~~~~~~~d~~g~tpL~~A  232 (260)
T 3jxi_A          164 HKQADLRR------QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-----AKLFPDTNLEALLNNDGLSPLMMA  232 (260)
T ss_dssp             SCCCCTTC------CCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-----HHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred             ccCCCCcc------cCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-----cccccccchhhcccCCCCCHHHHH
Confidence             8999887      78999999999999887         79999999998     566       78999997764433

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=3.5e-24  Score=222.76  Aligned_cols=108  Identities=8%  Similarity=-0.156  Sum_probs=86.1

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCC------HhHHHHHHHCCCCccccCCCCc-cHHHHHHHcC-----CHHHH
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGY------DWALEPTTVAGVNINFRDVNGW-TALHWAAYCG-----RERTV  762 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~------~~iVk~LL~~Gadin~~D~~G~-TpLH~Aa~~G-----~~eiV  762 (1092)
                      ++++|+++|++||.+|..|+||||+|+..|+      .++|++||++|+++|.+|..|+ ||||+|+..|     +.++|
T Consensus        57 iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv  136 (186)
T 3t8k_A           57 ISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLY  136 (186)
T ss_dssp             HHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHH
Confidence            5566777788888888888888888888776      4678888888888888888888 8888888844     34688


Q ss_pred             HHHHH-cCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          763 ASLIA-LGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       763 ~~LLe-~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      ++||+ +|+++++      +|..|+||||+|+..|+.++|++|++..
T Consensus       137 ~~Ll~~~gad~~~------~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          137 KLIFSQSGLQLLI------KDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             HHHHTSTTCCTTC------CCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCcc------cCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence            88888 8888777      7788888888888888888888888755

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.89  E-value=3.2e-24  Score=229.63  Aligned_cols=191  Identities=11%  Similarity=-0.021  Sum_probs=130.1

Q ss_pred             ccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh
Q 001365          537 QEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN  616 (1092)
Q Consensus       537 ~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~  616 (1092)
                      .+.||||.|+..|+.++++.||++|++++..   ..|.||||+||..|+    +..+++|+..|+++|..|..|.|||| 
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~---~~~~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~d~~g~t~L~-   75 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN---PLPLALLLDSSLEGE----FDLVQRIIYEVDDPSLPNDEGITALH-   75 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTC----HHHHHHHTSTTSSCCCCCTTSCCHHH-
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCcccC---chhhHHHHHHHHcCC----HHHHHHHHHcCCCCCCcCCCCCCHHH-
Confidence            4689999999999999999999999998854   348999999999986    55557889999999988777776666 


Q ss_pred             hHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHH
Q 001365          617 LRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLV  696 (1092)
Q Consensus       617 ~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~Lv  696 (1092)
                                                                       .|+..++..                    ++
T Consensus        76 -------------------------------------------------~A~~~g~~~--------------------~v   86 (239)
T 1ycs_B           76 -------------------------------------------------NAVCAGHTE--------------------IV   86 (239)
T ss_dssp             -------------------------------------------------HHHHHTCHH--------------------HH
T ss_pred             -------------------------------------------------HHHHcCCHH--------------------HH
Confidence                                                             333333221                    77


Q ss_pred             HHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCc-cHHHHH--HHcCCHHHHHHHHHcCCCCC
Q 001365          697 QKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGW-TALHWA--AYCGRERTVASLIALGAAPG  773 (1092)
Q Consensus       697 klLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~-TpLH~A--a~~G~~eiV~~LLe~GAdin  773 (1092)
                      ++|+++|+++|.+|..|+||||+||..|+.++|++|+++|++++.+|..|. ||||+|  +..|+.++|++|+++|++++
T Consensus        87 ~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~  166 (239)
T 1ycs_B           87 KFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG  166 (239)
T ss_dssp             HHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccc
Confidence            888999999999999999999999999999999999999999999998887 999999  88999999999999999998


Q ss_pred             CCCC---CCCCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 001365          774 ALSD---PTPKYPSGRTPADLASSIGHKGIAGYLAE  806 (1092)
Q Consensus       774 ~~~D---~n~~D~~G~TPLhlAa~~G~~eiv~~LLe  806 (1092)
                      ..+.   ....+..|.||+++|...|.  ++.+|.+
T Consensus       167 ~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~  200 (239)
T 1ycs_B          167 IMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHR  200 (239)
T ss_dssp             TTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCC
T ss_pred             ccccceEEEEeccCCCCCCcccccCCC--EEEEEEe
Confidence            7431   11236789999999988775  4444444

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.88  E-value=1.3e-22  Score=208.48  Aligned_cols=144  Identities=23%  Similarity=0.190  Sum_probs=133.2

Q ss_pred             cCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHC
Q 001365          656 DENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVA  735 (1092)
Q Consensus       656 ~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~  735 (1092)
                      .+..|+||||.|+..+...                    +++.|++.|++++..|..|+||||+|+..|+.++|++|+++
T Consensus        31 ~d~~g~t~L~~A~~~g~~~--------------------~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   90 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMEN--------------------AIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK   90 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGG--------------------GHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHH--------------------HHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHC
Confidence            3578999999999887765                    67788889999999999999999999999999999999999


Q ss_pred             CCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccc
Q 001365          736 GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSA  815 (1092)
Q Consensus       736 Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~ad  815 (1092)
                      |++++.+|..|+||||+|+..|+.++|++|+++|++++.      +|..|.||||+|+..|+.+++++|+++|     ++
T Consensus        91 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~  159 (192)
T 2rfm_A           91 GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND------RNLEGETPLIVASKYGRSEIVKKLLELG-----AD  159 (192)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC------CCTTCCCHHHHHHHHTCHHHHHHHHHTT-----CC
T ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CC
Confidence            999999999999999999999999999999999999887      7899999999999999999999999998     78


Q ss_pred             CcccCCCCCcHHHHh
Q 001365          816 ISLNKKDGDVAEVTG  830 (1092)
Q Consensus       816 lnlkD~~G~ta~iaa  830 (1092)
                      ++.+|..|.++...+
T Consensus       160 ~~~~~~~g~t~l~~A  174 (192)
T 2rfm_A          160 ISARDLTGLTAEASA  174 (192)
T ss_dssp             TTCBCTTSCBHHHHH
T ss_pred             CCCcCCCCCCHHHHH
Confidence            999999997774433

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.88  E-value=8.2e-26  Score=241.87  Aligned_cols=187  Identities=11%  Similarity=-0.045  Sum_probs=155.1

Q ss_pred             cccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHh
Q 001365          536 QQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSE  615 (1092)
Q Consensus       536 ~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~  615 (1092)
                      ..+.||||+||..|+.+++++|++.|++++  ..+..|+||||+||..|+    +..+++|++.|+++|.+|..|.||||
T Consensus        19 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~ga~~n~~d~~g~tpLh   92 (229)
T 2vge_A           19 LNPLVLLLDAALTGELEVVQQAVKEMNDPS--QPNEEGITALHNAICGAN----YSIVDFLITAGANVNSPDSHGWTPLH   92 (229)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHHHSSCTT--CCCTTSCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             cchhHHHHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCCHHHHHHHcCC----HHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            446789999999999999999999999877  567779999999999985    44457889999999988777766666


Q ss_pred             hhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHH
Q 001365          616 NLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWL  695 (1092)
Q Consensus       616 ~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~L  695 (1092)
                                                                        .|+..+...                    +
T Consensus        93 --------------------------------------------------~A~~~g~~~--------------------~  102 (229)
T 2vge_A           93 --------------------------------------------------CAASCNDTV--------------------I  102 (229)
T ss_dssp             --------------------------------------------------HHHHTTCHH--------------------H
T ss_pred             --------------------------------------------------HHHHcCCHH--------------------H
Confidence                                                              333333221                    7


Q ss_pred             HHHHHhCCCCCCccc-CCCCcHHHHH--HHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCC
Q 001365          696 VQKAAEGGKGPCVLD-HCGQGVLHFA--AALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP  772 (1092)
Q Consensus       696 vklLle~GadvN~~D-~~G~TpLH~A--A~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdi  772 (1092)
                      +++|++.|++++..+ ..|+||||+|  +..|+.+++++|+++|++++.+|..|.||||.++..+   .+++|++.|+++
T Consensus       103 v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~---~~~~ll~~ga~~  179 (229)
T 2vge_A          103 CMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF---GDELSFREGESV  179 (229)
T ss_dssp             HHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSS---TTBCCBCTTCEE
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcc---ccccCccccccc
Confidence            788999999999987 6999999999  9999999999999999999999999999999765554   336788899985


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Q 001365          773 GALSDPTPKYPSGRTPADLASSIGHKGIAGYLA  805 (1092)
Q Consensus       773 n~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LL  805 (1092)
                      ++    +.+|..|+||||+|+..|+.++|+.++
T Consensus       180 ~~----~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          180 TV----LRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             EE----EESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             cc----cccCCCcccHHHHHHHcCCcceeehhh
Confidence            43    338899999999999999999887644

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.88  E-value=3.6e-23  Score=206.58  Aligned_cols=139  Identities=24%  Similarity=0.264  Sum_probs=117.0

Q ss_pred             CCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCC
Q 001365          657 ENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAG  736 (1092)
Q Consensus       657 d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~G  736 (1092)
                      +..+.++||.|+..+...                    +++.|+++|+++|.+|..|+||||+|+ .|+.++|++|+++|
T Consensus         9 ~~~~~t~L~~A~~~g~~~--------------------~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g   67 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVE--------------------EVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG   67 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHH--------------------HHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT
T ss_pred             CccchHHHHHHHHcCCHH--------------------HHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcC
Confidence            367889999998877653                    788899999999999999999999986 99999999999999


Q ss_pred             CCccccCCCCcc-HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccc
Q 001365          737 VNINFRDVNGWT-ALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSA  815 (1092)
Q Consensus       737 adin~~D~~G~T-pLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~ad  815 (1092)
                      ++++.+|..|+| |||+||..|+.++|++|+++|++++.      +|..|+||||+|+..|+.+++++|+++|     ++
T Consensus        68 ~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A~~~~~~~~v~~Ll~~g-----a~  136 (156)
T 1bi7_B           68 AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV------RDAWGRLPVDLAEELGHRDVARYLRAAA-----GG  136 (156)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSC------CCTTCCCHHHHHHHHTCHHHHHHHSSCC-------
T ss_pred             CCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcc------cCCCCCCHHHHHHHhCHHHHHHHHHHcC-----CC
Confidence            999999999999 99999999999999999999999887      7799999999999999999999999998     78


Q ss_pred             CcccCCCCCcHH
Q 001365          816 ISLNKKDGDVAE  827 (1092)
Q Consensus       816 lnlkD~~G~ta~  827 (1092)
                      ++.+|..|.++.
T Consensus       137 ~~~~~~~g~t~~  148 (156)
T 1bi7_B          137 TRGSNHARIDAA  148 (156)
T ss_dssp             ------------
T ss_pred             CCccCcCcCccc
Confidence            999999887653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.88  E-value=1.3e-22  Score=222.47  Aligned_cols=164  Identities=15%  Similarity=0.115  Sum_probs=134.8

Q ss_pred             CCcccChHHHHHHHcCCcHHHHHHHHCCC-CCCCCCCCCCCchHHHHHHHcCC-CchhHHHHHHHHhCCCCcccccCCCC
Q 001365          534 MSQQEAENCKWSCMFGEIEVPAEIVAGGV-LRCHTSSQKVGRVPFYVTCSNRL-SCSEVREFEYRASHIPDVDVADNCGD  611 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~veVv~~LL~~Ga-din~~~~d~~G~TPLHlAa~ng~-~~seVv~fe~Ll~~Gadvna~D~~G~  611 (1092)
                      .+..+.||||+||..|+.+++++||+.|+ +++  ..+..|.||||+||.... ....+..+++|+..|.+++..|.   
T Consensus       107 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~--~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~---  181 (276)
T 4hbd_A          107 ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVD--KQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQ---  181 (276)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTT--CCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTT---
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCC--CCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCC---
Confidence            45678999999999999999999999998 766  667779999999995421 01334445566666655544443   


Q ss_pred             cHHhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhh
Q 001365          612 ITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKL  691 (1092)
Q Consensus       612 TpL~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l  691 (1092)
                                                                     .|+||||.|+..+...                 
T Consensus       182 -----------------------------------------------~g~tpLh~A~~~g~~~-----------------  197 (276)
T 4hbd_A          182 -----------------------------------------------AGQTALMLAVSHGRVD-----------------  197 (276)
T ss_dssp             -----------------------------------------------TCCCHHHHHHHTTCHH-----------------
T ss_pred             -----------------------------------------------CCCCHHHHHHHcCCHH-----------------
Confidence                                                           4556666666554432                 


Q ss_pred             HHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHH-CCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcC
Q 001365          692 QVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTV-AGVNINFRDVNGWTALHWAAYCGRERTVASLIALG  769 (1092)
Q Consensus       692 ~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~-~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~G  769 (1092)
                         ++++|+++|+++|.+|..|+||||+||..|+.++|++||+ .|++++.+|..|+||||+|+..|+.++|++|++++
T Consensus       198 ---~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          198 ---VVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             ---HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             ---HHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence               7888999999999999999999999999999999999999 89999999999999999999999999999999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.88  E-value=2.9e-22  Score=201.10  Aligned_cols=140  Identities=20%  Similarity=0.083  Sum_probs=128.8

Q ss_pred             CcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCC
Q 001365          659 DDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVN  738 (1092)
Q Consensus       659 ~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gad  738 (1092)
                      .|.||||.|+..+...                    +++.|++.|+++|.+|..|.||||+|+..|+.++|++|+++|++
T Consensus         2 ~~~t~L~~A~~~g~~~--------------------~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   61 (167)
T 3v31_A            2 ANSLSVHQLAAQGEML--------------------YLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD   61 (167)
T ss_dssp             TTCCCHHHHHHTTCHH--------------------HHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCcchHHHHHHCCCHH--------------------HHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            5678888888877643                    77788899999999999999999999999999999999999999


Q ss_pred             ccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcc
Q 001365          739 INFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISL  818 (1092)
Q Consensus       739 in~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnl  818 (1092)
                      ++.+|..|+||||+|+..|+.++|++|+++|++++.      +|..|.||||+|+..|+.+++++|+++|     ++++.
T Consensus        62 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~  130 (167)
T 3v31_A           62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE------YDWNGGTPLLYAVHGNHVKCVKMLLESG-----ADPTI  130 (167)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTC
T ss_pred             CCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCc------CCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCC
Confidence            999999999999999999999999999999999887      7799999999999999999999999998     78999


Q ss_pred             cCCCCCcHHHH
Q 001365          819 NKKDGDVAEVT  829 (1092)
Q Consensus       819 kD~~G~ta~ia  829 (1092)
                      +|..|.++...
T Consensus       131 ~~~~g~t~l~~  141 (167)
T 3v31_A          131 ETDSGYNSMDL  141 (167)
T ss_dssp             CCTTSCCHHHH
T ss_pred             cCCCCCCHHHH
Confidence            99999776433

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.88  E-value=5.2e-22  Score=200.51  Aligned_cols=140  Identities=27%  Similarity=0.242  Sum_probs=126.9

Q ss_pred             CcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCC
Q 001365          659 DDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVN  738 (1092)
Q Consensus       659 ~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gad  738 (1092)
                      .+.++|+.|+..+...                    +++.|+++|+++|.+|..|.||||+|+..|+.++|++|+++|++
T Consensus        13 ~~~~~l~~A~~~g~~~--------------------~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   72 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDD--------------------EVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD   72 (169)
T ss_dssp             CHHHHHHHHHHHTCHH--------------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cccchHHHHHHcCCHH--------------------HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4556666666655542                    78899999999999999999999999999999999999999999


Q ss_pred             ccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcc
Q 001365          739 INFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISL  818 (1092)
Q Consensus       739 in~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnl  818 (1092)
                      ++.+|..|+||||+||..|+.++|++|+++|++++.      +|..|.||||+|+..|+.+++++|+++|     ++++.
T Consensus        73 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~  141 (169)
T 2y1l_E           73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA------NDMEGHTPLHLAAMFGHLEIVEVLLKNG-----ADVNA  141 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTC
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCC
Confidence            999999999999999999999999999999999887      7789999999999999999999999998     77999


Q ss_pred             cCCCCCcHHHH
Q 001365          819 NKKDGDVAEVT  829 (1092)
Q Consensus       819 kD~~G~ta~ia  829 (1092)
                      +|..|.++...
T Consensus       142 ~~~~g~t~l~~  152 (169)
T 2y1l_E          142 QDKFGKTAFDI  152 (169)
T ss_dssp             CCTTSCCHHHH
T ss_pred             cCCCCCCHHHH
Confidence            99999776443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.88  E-value=7.6e-23  Score=199.58  Aligned_cols=126  Identities=25%  Similarity=0.240  Sum_probs=118.8

Q ss_pred             CCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCC
Q 001365          657 ENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAG  736 (1092)
Q Consensus       657 d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~G  736 (1092)
                      +..+.++||.|+..+...                    +++.|+++|+++|.+|..|+||||+|+. |+.++|++|+++|
T Consensus         9 ~~~g~t~L~~A~~~~~~~--------------------~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g   67 (136)
T 1d9s_A            9 GGSSDAGLATAAARGQVE--------------------TVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHG   67 (136)
T ss_dssp             CCCCSCHHHHHHHTTCHH--------------------HHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHT
T ss_pred             CCCCccHHHHHHHcCCHH--------------------HHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCC
Confidence            468999999999877643                    7888999999999999999999999999 9999999999999


Q ss_pred             CCccccCCC-CccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          737 VNINFRDVN-GWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       737 adin~~D~~-G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                      ++++.+|.. |+||||+||..|+.++|++|+++|++++.      +|..|.||||+|+..|+.+++++|+++|+
T Consensus        68 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           68 AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV------CDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             CCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCC------CSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------cCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999 99999999999999999999999999887      77999999999999999999999999984

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=5.1e-22  Score=193.71  Aligned_cols=125  Identities=25%  Similarity=0.259  Sum_probs=114.5

Q ss_pred             CCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCC
Q 001365          658 NDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGV  737 (1092)
Q Consensus       658 ~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Ga  737 (1092)
                      ..+.++|+.|+..+...                    +++.|+++|+++|.+|..|+||||+||..|+.++|++|+++|+
T Consensus        12 ~~~~t~l~~A~~~g~~~--------------------~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   71 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDD--------------------EVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA   71 (136)
T ss_dssp             CHHHHHHHHHHHHTCHH--------------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             ccccHHHHHHHHhCCHH--------------------HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            34667777777665543                    7888999999999999999999999999999999999999999


Q ss_pred             CccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          738 NINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       738 din~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      +++.+|..|+||||+||..|+.++|++|+++|++++.      +|..|.||||+|+..|+.+++++|++.|
T Consensus        72 ~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA------QDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcC------cCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999887      7899999999999999999999999876

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.87  E-value=9.6e-22  Score=195.04  Aligned_cols=123  Identities=26%  Similarity=0.175  Sum_probs=115.3

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      +++.|++.|++++ .|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+||..|+.++|++|+++|++++.
T Consensus        17 ~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~   95 (153)
T 1awc_B           17 EVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA   95 (153)
T ss_dssp             HHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC
T ss_pred             HHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCC
Confidence            7788999999887 688999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHH
Q 001365          775 LSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVT  829 (1092)
Q Consensus       775 ~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~ia  829 (1092)
                            +|..|+||||+|+..|+.+++++|+++|     ++++.+|..|.++...
T Consensus        96 ------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~t~l~~  139 (153)
T 1awc_B           96 ------KDMLKMTALHWATEHNHQEVVELLIKYG-----ADVHTQSKFCKTAFDI  139 (153)
T ss_dssp             ------CCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHH
T ss_pred             ------CCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCccccCCCCCCHHHH
Confidence                  7799999999999999999999999998     7899999999776433

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.87  E-value=5.3e-22  Score=198.79  Aligned_cols=140  Identities=19%  Similarity=0.176  Sum_probs=125.3

Q ss_pred             CCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHh-CCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCC
Q 001365          658 NDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAE-GGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAG  736 (1092)
Q Consensus       658 ~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle-~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~G  736 (1092)
                      .++.++|+.|+..++..                    +++.|++ .+.+++..+..|+||||+|+..|+.++|++|+++|
T Consensus         6 ~~~~~~l~~A~~~g~~~--------------------~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   65 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVE--------------------TVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG   65 (165)
T ss_dssp             CHHHHHHHHHHHHTCHH--------------------HHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             chhhHHHHHHHHhCCHH--------------------HHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcC
Confidence            56677777777766543                    5666666 66788889999999999999999999999999999


Q ss_pred             CCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccC
Q 001365          737 VNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAI  816 (1092)
Q Consensus       737 adin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adl  816 (1092)
                      ++++.+|..|+||||+||..|+.++|++|+++|++++.      +|..|+||||+|+..|+.+++++|+++|     +++
T Consensus        66 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~  134 (165)
T 3twr_A           66 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV------ADLWKFTPLHEAAAKGKYEICKLLLQHG-----ADP  134 (165)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCT
T ss_pred             CCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCC------cCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCC
Confidence            99999999999999999999999999999999999887      7789999999999999999999999998     789


Q ss_pred             cccCCCCCcHHH
Q 001365          817 SLNKKDGDVAEV  828 (1092)
Q Consensus       817 nlkD~~G~ta~i  828 (1092)
                      +.+|..|.|+..
T Consensus       135 ~~~~~~g~t~l~  146 (165)
T 3twr_A          135 TKKNRDGNTPLD  146 (165)
T ss_dssp             TCCCTTSCCTGG
T ss_pred             cccCCCCCChhH
Confidence            999999977643

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.87  E-value=8.7e-22  Score=200.47  Aligned_cols=138  Identities=23%  Similarity=0.225  Sum_probs=123.0

Q ss_pred             CcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhC-CCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCC
Q 001365          659 DDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEG-GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGV  737 (1092)
Q Consensus       659 ~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~-GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Ga  737 (1092)
                      +++++|+.|+..++..                    +++.|++. +.+++..|..|+||||+||..|+.++|++|+++|+
T Consensus         4 ~~~~~l~~A~~~g~~~--------------------~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   63 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAV--------------------AVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA   63 (179)
T ss_dssp             ---CCHHHHHHHTCHH--------------------HHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCHH--------------------HHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            5667777777766543                    56667766 77899999999999999999999999999999999


Q ss_pred             CccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCc
Q 001365          738 NINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAIS  817 (1092)
Q Consensus       738 din~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adln  817 (1092)
                      +++.+|..|+||||+||..|+.++|++|+++|++++.      +|..|.||||+|+..|+.+++++|+++|     ++++
T Consensus        64 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~  132 (179)
T 3f6q_A           64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA------VNEHGNVPLHYACFWGQDQVAEDLVANG-----ALVS  132 (179)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCSS
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------cCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCcc
Confidence            9999999999999999999999999999999999887      7899999999999999999999999998     7899


Q ss_pred             ccCCCCCcHH
Q 001365          818 LNKKDGDVAE  827 (1092)
Q Consensus       818 lkD~~G~ta~  827 (1092)
                      .+|..|.++.
T Consensus       133 ~~~~~g~tpl  142 (179)
T 3f6q_A          133 ICNKYGEMPV  142 (179)
T ss_dssp             BCCTTSCCGG
T ss_pred             hhccCCCCcH
Confidence            9999997663

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.87  E-value=6.5e-22  Score=196.93  Aligned_cols=124  Identities=20%  Similarity=0.265  Sum_probs=115.3

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      +++.|+++|+++|..|..|+||||+|+. |+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.
T Consensus        20 ~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~   98 (162)
T 1ihb_A           20 QLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI   98 (162)
T ss_dssp             HHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            7888999999999999999999999999 999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHH
Q 001365          775 LSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVT  829 (1092)
Q Consensus       775 ~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~ia  829 (1092)
                            +|..|.||||+|+..|+.+++++|+++|+.    .++.+|..|.|+...
T Consensus        99 ------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~~g~t~l~~  143 (162)
T 1ihb_A           99 ------EDNEGNLPLHLAAKEGHLRVVEFLVKHTAS----NVGHRNHKGDTACDL  143 (162)
T ss_dssp             ------CCTTSCCHHHHHHHTTCHHHHHHHHHHSCC----CTTCCCTTSCCHHHH
T ss_pred             ------cCCCCCCHHHHHHHcCCHHHHHHHHHccCC----CCCCcCCCCCcHHHH
Confidence                  789999999999999999999999999932    368999999776443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.86  E-value=1.4e-21  Score=197.10  Aligned_cols=138  Identities=17%  Similarity=0.065  Sum_probs=124.0

Q ss_pred             chHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCC-CCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCc
Q 001365          661 WDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKG-PCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNI  739 (1092)
Q Consensus       661 ~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~Gad-vN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadi  739 (1092)
                      .++|+.|+..++..                    +++.|++.|.+ ++.+|..|+||||+||..|+.++|++|+++|+++
T Consensus         3 ~~~L~~A~~~g~~~--------------------~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   62 (172)
T 3v30_A            3 SLSIHQLAAQGELD--------------------QLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP   62 (172)
T ss_dssp             -CCHHHHHHTTCHH--------------------HHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred             hhhHHHHHHcCCHH--------------------HHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            46677777665543                    67778888877 8999999999999999999999999999999999


Q ss_pred             cccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCccc
Q 001365          740 NFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLN  819 (1092)
Q Consensus       740 n~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlk  819 (1092)
                      +.+|..|+||||+|+..|+.++|++|+++|++++.      +|..|+||||+|+..|+.+++++|+++|     ++++.+
T Consensus        63 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~~~  131 (172)
T 3v30_A           63 HILAKERESALSLASTGGYTDIVGLLLERDVDINI------YDWNGGTPLLYAVRGNHVKCVEALLARG-----ADLTTE  131 (172)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCC
T ss_pred             hhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCcccc
Confidence            99999999999999999999999999999999887      7799999999999999999999999998     789999


Q ss_pred             CCCCCcHHHH
Q 001365          820 KKDGDVAEVT  829 (1092)
Q Consensus       820 D~~G~ta~ia  829 (1092)
                      |..|.++...
T Consensus       132 ~~~g~t~l~~  141 (172)
T 3v30_A          132 ADSGYTPMDL  141 (172)
T ss_dssp             CTTSCCHHHH
T ss_pred             CCCCCCHHHH
Confidence            9999776433

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.86  E-value=1.8e-21  Score=184.29  Aligned_cols=125  Identities=30%  Similarity=0.345  Sum_probs=116.5

Q ss_pred             CcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCC
Q 001365          659 DDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVN  738 (1092)
Q Consensus       659 ~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gad  738 (1092)
                      +|+|+|+.|+..+...                    +++.|+++|++++..|..|.||||+|+..|+.+++++|+++|++
T Consensus         1 ~g~t~L~~A~~~~~~~--------------------~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~   60 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLE--------------------VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD   60 (126)
T ss_dssp             CCCCHHHHHHHHTCHH--------------------HHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CCccHHHHHHHcCcHH--------------------HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Confidence            4778888888766543                    77888899999999999999999999999999999999999999


Q ss_pred             ccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          739 INFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       739 in~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                      ++.+|..|+||||+|+..|+.+++++|+++|++++.      +|..|.||||+|+..|+.+++++|+++|+
T Consensus        61 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~------~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA------KDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             CcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcc------cCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            999999999999999999999999999999999887      77999999999999999999999999994

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.85  E-value=4.8e-22  Score=212.62  Aligned_cols=138  Identities=27%  Similarity=0.308  Sum_probs=126.4

Q ss_pred             CCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCC
Q 001365          658 NDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGV  737 (1092)
Q Consensus       658 ~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Ga  737 (1092)
                      ..++++|+.|+..+...                    +++.|++.|+++|.+|..|+||||+||..|+.++|++|+++|+
T Consensus        19 ~~~~t~L~~A~~~g~~~--------------------~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga   78 (229)
T 2vge_A           19 LNPLVLLLDAALTGELE--------------------VVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGA   78 (229)
T ss_dssp             SCHHHHHHHHHHHTCHH--------------------HHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cchhHHHHHHHHcCCHH--------------------HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            57888999988876643                    7888999999999999999999999999999999999999999


Q ss_pred             CccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC-CCCCCHHHHH--HHcCcHHHHHHHHHcCCCCCcc
Q 001365          738 NINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKY-PSGRTPADLA--SSIGHKGIAGYLAESDLSSALS  814 (1092)
Q Consensus       738 din~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D-~~G~TPLhlA--a~~G~~eiv~~LLe~Ga~~h~a  814 (1092)
                      ++|.+|..|+||||+||..|+.++|++|+++|++++.      ++ ..|+||||+|  +..|+.+++++|+++|     +
T Consensus        79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~------~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g-----a  147 (229)
T 2vge_A           79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA------TTLSDGATAFEKCDPYREGYADCATYLADVE-----Q  147 (229)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC------CCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH-----H
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc------ccCCCCCCHHHHHHHHhcChHHHHHHHHHcC-----C
Confidence            9999999999999999999999999999999999987      54 6999999999  9999999999999998     6


Q ss_pred             cCcccCCCCCcH
Q 001365          815 AISLNKKDGDVA  826 (1092)
Q Consensus       815 dlnlkD~~G~ta  826 (1092)
                      +++.+|..|.++
T Consensus       148 ~~~~~~~~~~~~  159 (229)
T 2vge_A          148 SMGLMNSGAVYA  159 (229)
T ss_dssp             HTTTSGGGEEEE
T ss_pred             CcccccCCchHH
Confidence            788888777554

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.85  E-value=2.3e-21  Score=193.48  Aligned_cols=143  Identities=15%  Similarity=0.071  Sum_probs=105.0

Q ss_pred             CCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHH
Q 001365          569 SQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNS  648 (1092)
Q Consensus       569 ~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~  648 (1092)
                      .+..|.||||+||..|+    +..+++|+..|++++..|..|.||||..                               
T Consensus         8 ~~~~~~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-------------------------------   52 (156)
T 1bi7_B            8 SMEPSADWLATAAARGR----VEEVRALLEAGANPNAPNSYGRRPIQVM-------------------------------   52 (156)
T ss_dssp             --CCSTTHHHHHHHHTC----HHHHHHHHTTTCCTTCCCSSSCCTTTSS-------------------------------
T ss_pred             CCccchHHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCCCCCHHHHH-------------------------------
Confidence            35568888888888875    4455677888888888877777777711                               


Q ss_pred             HHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCc-HHHHHHHcCCHh
Q 001365          649 KISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQG-VLHFAAALGYDW  727 (1092)
Q Consensus       649 ~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~T-pLH~AA~~G~~~  727 (1092)
                                         + .+..                    -++++|+++|+++|.+|..|+| |||+|+..|+.+
T Consensus        53 -------------------~-~~~~--------------------~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~   92 (156)
T 1bi7_B           53 -------------------M-MGSA--------------------RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLD   92 (156)
T ss_dssp             -------------------C-TTCH--------------------HHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHH
T ss_pred             -------------------H-cCCH--------------------HHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHH
Confidence                               0 0010                    1677888999999999999999 999999999999


Q ss_pred             HHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHH
Q 001365          728 ALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLA  792 (1092)
Q Consensus       728 iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlA  792 (1092)
                      +|++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.      +|..|.||.+-+
T Consensus        93 ~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~------~~~~g~t~~~~~  151 (156)
T 1bi7_B           93 TLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG------SNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------------
T ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCc------cCcCcCcccccC
Confidence            99999999999999999999999999999999999999999999888      778999998743

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.84  E-value=1.6e-20  Score=186.04  Aligned_cols=123  Identities=23%  Similarity=0.247  Sum_probs=112.1

Q ss_pred             HHHHHHhC-CCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCC
Q 001365          695 LVQKAAEG-GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPG  773 (1092)
Q Consensus       695 LvklLle~-GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin  773 (1092)
                      +++.|++. +.+++..|..|.||||+ |..|+.++|++|+++|++++.+|..|+||||+||..|+.++|++|+++|++++
T Consensus        17 ~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   95 (156)
T 1bd8_A           17 EVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN   95 (156)
T ss_dssp             HHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence            56666766 55999999999999999 99999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          774 ALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       774 ~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      .      +|..|+||||+|+..|+.+++++|++.      ++++.+|..|.++...+
T Consensus        96 ~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~------~~~~~~~~~g~t~l~~A  140 (156)
T 1bd8_A           96 V------PDGTGALPIHLAVQEGHTAVVSFLAAE------SDLHRRDARGLTPLELA  140 (156)
T ss_dssp             C------CCTTSCCHHHHHHHHTCHHHHHHHHTT------SCTTCCCTTSCCHHHHH
T ss_pred             C------cCCCCCcHHHHHHHhChHHHHHHHHhc------cCCCCcCCCCCCHHHHH
Confidence            7      778999999999999999999999985      47899999997764433

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=9.2e-21  Score=184.51  Aligned_cols=123  Identities=24%  Similarity=0.286  Sum_probs=108.7

Q ss_pred             CCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 001365          703 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKY  782 (1092)
Q Consensus       703 GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D  782 (1092)
                      |+|+ .+|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+||..|+.++|++|+++|++++.      +|
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~------~~   73 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT------TG   73 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC------cC
Confidence            6788 6899999999999999999999999999999999999999999999999999999999999999887      77


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH-HHHhhhhhccc
Q 001365          783 PSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA-EVTGATAVQTV  837 (1092)
Q Consensus       783 ~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta-~iaa~~~v~~l  837 (1092)
                      ..|.||||+|+..|+.+++++|+++|     ++++.+|..|.++ .++.......+
T Consensus        74 ~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~tpl~~A~~~~~~~~  124 (137)
T 3c5r_A           74 YQNDSPLHDAAKNGHVDIVKLLLSYG-----ASRNAVNIFGLRPVDYTDDESMKSL  124 (137)
T ss_dssp             GGGCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCGGGGCCCHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHhhccHHHH
Confidence            89999999999999999999999998     7899999999665 44444333333

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.83  E-value=2.6e-21  Score=188.32  Aligned_cols=126  Identities=22%  Similarity=0.183  Sum_probs=114.8

Q ss_pred             CCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCC
Q 001365          657 ENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAG  736 (1092)
Q Consensus       657 d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~G  736 (1092)
                      +..|+|+||.|+..+...                    +++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus         7 ~~~g~t~L~~A~~~~~~~--------------------~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g   66 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIP--------------------SVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK   66 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHH--------------------HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHcCCHH--------------------HHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            468999999998876643                    778899999999999999999999999999999999999999


Q ss_pred             CCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          737 VNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       737 adin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      ++++.+|..|+||||+|+..|+.++|++|+++|++++.      +|..|.||||+|+..++.+++.+|.+.+
T Consensus        67 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA------VNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            99999999999999999999999999999999999887      7899999999999999999999888765

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=3.8e-21  Score=202.43  Aligned_cols=135  Identities=20%  Similarity=0.203  Sum_probs=112.2

Q ss_pred             CCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHC-C
Q 001365          658 NDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVA-G  736 (1092)
Q Consensus       658 ~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~-G  736 (1092)
                      ..|.|+||.|+..+...                    +++.|++.|+++|.+|..|+||||+||..|+.++|++||++ |
T Consensus        71 ~~g~t~L~~A~~~g~~~--------------------~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g  130 (222)
T 3ehr_A           71 ESIDNPLHEAAKRGNLS--------------------WLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPN  130 (222)
T ss_dssp             EEESCHHHHHHHHTCHH--------------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTT
T ss_pred             cccccccccccccCcHH--------------------HHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCC
Confidence            57889999988876643                    78889999999999999999999999999999999999999 9


Q ss_pred             CCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccC
Q 001365          737 VNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAI  816 (1092)
Q Consensus       737 adin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adl  816 (1092)
                      ++++.+|..|+||||+||..|+.++|++||++|++++.      +|..|.||||+|+..|+.++++.|++.|     +..
T Consensus       131 ~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~------~~~~g~t~l~~A~~~~~~~~l~~l~~~~-----~~~  199 (222)
T 3ehr_A          131 IELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL------RNIEKKLAFDMATNAACASLLKKKQGTD-----AVR  199 (222)
T ss_dssp             CCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCC------CCTTSCCHHHHCCSHHHHHHHC--------------
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc------ccCCCCCHHHHhcchhHHHHHHHHhccc-----hhh
Confidence            99999999999999999999999999999999999888      7899999999999999999999999998     556


Q ss_pred             cccCCCC
Q 001365          817 SLNKKDG  823 (1092)
Q Consensus       817 nlkD~~G  823 (1092)
                      ++++.+|
T Consensus       200 ~~~~~~~  206 (222)
T 3ehr_A          200 TLSNAED  206 (222)
T ss_dssp             -------
T ss_pred             hccchhh
Confidence            6666655

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.83  E-value=5.1e-20  Score=179.47  Aligned_cols=124  Identities=21%  Similarity=0.210  Sum_probs=105.8

Q ss_pred             ccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh
Q 001365          537 QEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN  616 (1092)
Q Consensus       537 ~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~  616 (1092)
                      .+.||||+||..|+.+++++|++.|++++  ..+..|.||||+||.+|+    +.                         
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~----~~-------------------------   61 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADVN--AKDEYGLTPLYLATAHGH----LE-------------------------   61 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTC----HH-------------------------
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCC----HH-------------------------
Confidence            35678888888888888888888888766  456668888888887653    11                         


Q ss_pred             hHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHH
Q 001365          617 LRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLV  696 (1092)
Q Consensus       617 ~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~Lv  696 (1092)
                                                                                                    ++
T Consensus        62 ------------------------------------------------------------------------------~v   63 (136)
T 2jab_A           62 ------------------------------------------------------------------------------IV   63 (136)
T ss_dssp             ------------------------------------------------------------------------------HH
T ss_pred             ------------------------------------------------------------------------------HH
Confidence                                                                                          45


Q ss_pred             HHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcC
Q 001365          697 QKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG  769 (1092)
Q Consensus       697 klLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~G  769 (1092)
                      ++|+++|+++|.+|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|+++|
T Consensus        64 ~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           64 EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            5567778888999999999999999999999999999999999999999999999999999999999999986

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.83  E-value=7.2e-20  Score=173.25  Aligned_cols=77  Identities=34%  Similarity=0.361  Sum_probs=72.0

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA  771 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAd  771 (1092)
                      ++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|||
T Consensus        50 ~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           50 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            44556777888888999999999999999999999999999999999999999999999999999999999999986

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.82  E-value=2.1e-20  Score=182.22  Aligned_cols=116  Identities=19%  Similarity=0.158  Sum_probs=109.0

Q ss_pred             CCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC
Q 001365          703 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKY  782 (1092)
Q Consensus       703 GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D  782 (1092)
                      ++++|..|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+||. |+.++|++|+++|++++.      +|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~------~~   74 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC------AD   74 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC------CB
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC------cC
Confidence            67899999999999999999999999999999999999999999999999999 999999999999999887      77


Q ss_pred             CC-CCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          783 PS-GRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       783 ~~-G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      .. |.||||+|+..|+.+++++|+++|     ++++.+|..|.|+...+
T Consensus        75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~~~d~~g~tpl~~A  118 (136)
T 1d9s_A           75 PATLTRPVHDAAREGFLDTLVVLHRAG-----ARLDVCDAWGRLPVDLA  118 (136)
T ss_dssp             TTTTBCHHHHHHHHTCHHHHHHHHHTC-----CCCCCCSSSSSCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCCCCCHHHHH
Confidence            88 999999999999999999999998     78999999997764433

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=4.9e-20  Score=168.06  Aligned_cols=92  Identities=37%  Similarity=0.428  Sum_probs=87.7

Q ss_pred             CCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHH
Q 001365          712 CGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADL  791 (1092)
Q Consensus       712 ~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhl  791 (1092)
                      +|+||||+||..|+.+++++|+++|+++|.+|..|+||||+||..|+.++|++|+++|++++.      +|..|+||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------~d~~g~t~l~~   74 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA------KDKNGRTPLHL   74 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTSCCHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------cCCCCCCHHHH
Confidence            489999999999999999999999999999999999999999999999999999999999887      78999999999


Q ss_pred             HHHcCcHHHHHHHHHcCC
Q 001365          792 ASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       792 Aa~~G~~eiv~~LLe~Ga  809 (1092)
                      |+..|+.+++++|+++|+
T Consensus        75 A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           75 AARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HHHTTCHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCC
Confidence            999999999999999984

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=2e-20  Score=179.02  Aligned_cols=117  Identities=24%  Similarity=0.188  Sum_probs=101.3

Q ss_pred             CCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCC
Q 001365          658 NDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGV  737 (1092)
Q Consensus       658 ~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Ga  737 (1092)
                      ..+.++|+.|+..+...                    +++.|++.|+++|.+|..|+||||+||..|+.++|++|+++|+
T Consensus         5 ~~~~~~l~~A~~~~~~~--------------------~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   64 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLD--------------------EVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA   64 (123)
T ss_dssp             --CHHHHHHHHHTTCHH--------------------HHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             cccchHHHHHHHcCCHH--------------------HHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            35667787777766543                    7788899999999999999999999999999999999999999


Q ss_pred             CccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHH
Q 001365          738 NINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI  800 (1092)
Q Consensus       738 din~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~ei  800 (1092)
                      +++.+|..|+||||+|+..|+.++|++|+++|++++.      +|..|.||||+|+..+..++
T Consensus        65 ~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~------~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           65 DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV------KGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC------CCTTSCCHHHHCCCHHHHHH
T ss_pred             CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC------cCCCCCCHHHHhCCHHHHHH
Confidence            9999999999999999999999999999999999877      78999999999954444443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.81  E-value=5e-22  Score=228.80  Aligned_cols=214  Identities=9%  Similarity=-0.013  Sum_probs=141.7

Q ss_pred             ChHHHHHHHcCCcHHHHHHHHCCCCCC-CCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCc---ccccCCCCcHH
Q 001365          539 AENCKWSCMFGEIEVPAEIVAGGVLRC-HTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDV---DVADNCGDITS  614 (1092)
Q Consensus       539 ~TpLH~A~~fG~veVv~~LL~~Gadin-~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadv---na~D~~G~TpL  614 (1092)
                      .||||+||..|+.+++++|++.|+... ....+..|.||||+||.+|+    +..+++|++.|+++   +..+.+ .|||
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~----~eiv~~Ll~~gad~~~~~i~~~~-~TpL  167 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH----LHVLNRLCELAPTEIMAMIQAEN-YHAF  167 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTC----HHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCC----HHHHHHHHhCCCCccccccCCCC-CCHH
Confidence            489999999999999999999998321 11234568999999999996    44457899999863   333222 7888


Q ss_pred             hh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhh-hhcCCChHHHHHHHHHHHHH
Q 001365          615 EN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLT-AEEKFSSEEVKEKLVQKLLK  688 (1092)
Q Consensus       615 ~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~-~~~~~s~~~~~~~lL~~a~k  688 (1092)
                      |.    ++.+++++|+. |++++.               ..     .+..|+||||.|+ ..++..              
T Consensus       168 h~Aa~~G~~eiv~~Ll~~ga~~~~---------------~~-----~d~~g~TpL~~Aa~~~G~~e--------------  213 (376)
T 2aja_A          168 RLAAENGHLHVLNRLCELAPTEAT---------------AM-----IQAENYYAFRWAAVGRGHHN--------------  213 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHH---------------HH-----HHHHHHHHHHHHHSTTCCHH--------------
T ss_pred             HHHHHCCCHHHHHHHHHcCCccch---------------hc-----cCCCCCCHHHHHHHHCCCHH--------------
Confidence            84    77788887754 443211               00     0135678888887 766643              


Q ss_pred             hhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHH-------
Q 001365          689 EKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERT-------  761 (1092)
Q Consensus       689 ~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~ei-------  761 (1092)
                            ++++|+++|+       .|.||||+|+..|+.+++++|+++|++++.+|    +++++|+..|+.++       
T Consensus       214 ------iv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~  276 (376)
T 2aja_A          214 ------VINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECL  276 (376)
T ss_dssp             ------HHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHH
T ss_pred             ------HHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhh
Confidence                  6777777664       27788888888888888888888888877654    35566666665442       


Q ss_pred             -----HHHHHHcCCC--------------CCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          762 -----VASLIALGAA--------------PGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       762 -----V~~LLe~GAd--------------in~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                           ++.|+..|..              +....+.....+.+.||||+|+..|+.++|++|++.|
T Consensus       277 ~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~  342 (376)
T 2aja_A          277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP  342 (376)
T ss_dssp             HHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             hhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh
Confidence                 2233333221              0000000112345778999999999999999999865

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.81  E-value=8.7e-20  Score=174.54  Aligned_cols=111  Identities=23%  Similarity=0.178  Sum_probs=101.0

Q ss_pred             ccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCH
Q 001365          709 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTP  788 (1092)
Q Consensus       709 ~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TP  788 (1092)
                      .+..|.||||+|+..|+.++|+.|++.|++++.+|..|+||||+||..|+.++|++|+++|++++.      +|..|+||
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~d~~g~tp   76 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA------PDKHHITP   76 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC------CCTTSCCH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc------CCCCCCCH
Confidence            356789999999999999999999999999999999999999999999999999999999999887      78999999


Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          789 ADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       789 LhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      ||+|+..|+.+++++|+++|     ++++.+|..|.++...+
T Consensus        77 L~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           77 LLSAVYEGHVSCVKLLLSKG-----ADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHHh
Confidence            99999999999999999998     77999999997764443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.81  E-value=1e-18  Score=192.56  Aligned_cols=110  Identities=19%  Similarity=0.152  Sum_probs=102.2

Q ss_pred             HHHHHHhCCCCCC------cccCCCCcHHHHHHHc---CCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHH
Q 001365          695 LVQKAAEGGKGPC------VLDHCGQGVLHFAAAL---GYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASL  765 (1092)
Q Consensus       695 LvklLle~GadvN------~~D~~G~TpLH~AA~~---G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~L  765 (1092)
                      .+..++..|++++      ..|..|+||||+||..   |+.++|++||++|+++|.+|..|+||||+||..|+.++|++|
T Consensus       145 ~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~L  224 (278)
T 1dcq_A          145 GLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL  224 (278)
T ss_dssp             HHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4566788899854      4588999999999999   899999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Q 001365          766 IALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLS  810 (1092)
Q Consensus       766 Le~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~  810 (1092)
                      |++||+++.      +|..|.||||+|+..|+.+++++|+++|+.
T Consensus       225 l~~gad~~~------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          225 LRGKASIEI------ANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHcCCCCCC------ccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999888      789999999999999999999999999853

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.80  E-value=8.5e-20  Score=187.12  Aligned_cols=111  Identities=28%  Similarity=0.304  Sum_probs=99.6

Q ss_pred             CcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCC
Q 001365          659 DDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVN  738 (1092)
Q Consensus       659 ~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gad  738 (1092)
                      .|.||||.|+..++..                    +++.|++ |+++|.+|..|+||||+||..|+.++|++|+++|++
T Consensus        43 ~g~t~L~~A~~~g~~~--------------------~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  101 (183)
T 3deo_A           43 EYETPWWTAARKADEQ--------------------ALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD  101 (183)
T ss_dssp             HHHHHHHHHHHTTCHH--------------------HHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHcCCHH--------------------HHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            5667777776655432                    6777888 999999999999999999999999999999999999


Q ss_pred             ccccC-CCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcC
Q 001365          739 INFRD-VNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIG  796 (1092)
Q Consensus       739 in~~D-~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G  796 (1092)
                      +|.+| ..|+||||+|+..|+.++|++|+++|++++.      +|..|+||||+|+..+
T Consensus       102 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~------~d~~g~tpl~~A~~~~  154 (183)
T 3deo_A          102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV------EDERGLTALELAREIL  154 (183)
T ss_dssp             TTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTC------CCTTSCCHHHHHHHHH
T ss_pred             CCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcC------CCCCCCCHHHHHHHhc
Confidence            99998 8999999999999999999999999999887      7899999999998763

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.80  E-value=2.8e-20  Score=193.25  Aligned_cols=138  Identities=13%  Similarity=-0.047  Sum_probs=114.1

Q ss_pred             cchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCccc-CCCCcHHHHHHHcCCH----hHHHHHHH
Q 001365          660 DWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLD-HCGQGVLHFAAALGYD----WALEPTTV  734 (1092)
Q Consensus       660 g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D-~~G~TpLH~AA~~G~~----~iVk~LL~  734 (1092)
                      ++++|+.++..+.+.                    .++.++..+  ++..+ ..|+||||+|+..|+.    ++|++||+
T Consensus         6 ~~~~l~~Aa~~g~~~--------------------~~~~l~~~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~   63 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYE--------------------DFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLIN   63 (186)
T ss_dssp             HCSSHHHHHHHSCHH--------------------HHHHHHHHS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHcCCHH--------------------HHHHHHhcC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHH
Confidence            456677777666542                    233344444  55666 7899999999999975    58999999


Q ss_pred             CCCCccccCCCCccHHHHHHHcCC------HHHHHHHHHcCCCCCCCCCCCCCCCCCC-CHHHHHHHcC-----cHHHHH
Q 001365          735 AGVNINFRDVNGWTALHWAAYCGR------ERTVASLIALGAAPGALSDPTPKYPSGR-TPADLASSIG-----HKGIAG  802 (1092)
Q Consensus       735 ~Gadin~~D~~G~TpLH~Aa~~G~------~eiV~~LLe~GAdin~~~D~n~~D~~G~-TPLhlAa~~G-----~~eiv~  802 (1092)
                      +|+++|.+|..|+||||+|+..|+      .++|++||++||++|+      +|..|+ ||||+|+..+     +.++++
T Consensus        64 ~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~------~d~~g~ttpLh~A~~~~~~~~~~~~iv~  137 (186)
T 3t8k_A           64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA------LYKPYKIVVFKNIFNYFVDENEMIPLYK  137 (186)
T ss_dssp             TTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS------CBGGGTBCTTGGGGGCCSCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc------cCCCcCchHHHHHHHcCCChhhHHHHHH
Confidence            999999999999999999999997      6889999999999988      789999 9999999954     467999


Q ss_pred             HHHH-cCCCCCcccCcccCCCCCcHHHHh
Q 001365          803 YLAE-SDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       803 ~LLe-~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      +|++ +|     ++++++|..|.||...+
T Consensus       138 ~Ll~~~g-----ad~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A          138 LIFSQSG-----LQLLIKDKWGLTALEFV  161 (186)
T ss_dssp             HHHTSTT-----CCTTCCCTTSCCHHHHH
T ss_pred             HHHHhcC-----CCCcccCCCCCCHHHHH
Confidence            9999 88     78999999997775444

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.79  E-value=1.2e-19  Score=202.50  Aligned_cols=92  Identities=20%  Similarity=0.040  Sum_probs=79.4

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      ++++|+++|+++|.+|..|+||||+|+..|+.++|++||++|++++.+|..|+||||+|+..|+.++|++|+++|++   
T Consensus       208 iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---  284 (301)
T 2b0o_E          208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG---  284 (301)
T ss_dssp             HHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---
T ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---
Confidence            56677888999999999999999999999999999999999999999999999999999999999999999999985   


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCcH
Q 001365          775 LSDPTPKYPSGRTPADLASSIGHK  798 (1092)
Q Consensus       775 ~~D~n~~D~~G~TPLhlAa~~G~~  798 (1092)
                               .|.||||+|+..|+.
T Consensus       285 ---------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          285 ---------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             ---------TTSSCCC--------
T ss_pred             ---------CCCChhHHHHhcCCc
Confidence                     478999999998874

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.79  E-value=3.4e-21  Score=221.92  Aligned_cols=184  Identities=9%  Similarity=0.067  Sum_probs=146.0

Q ss_pred             cChHHHHHHH-cCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh
Q 001365          538 EAENCKWSCM-FGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN  616 (1092)
Q Consensus       538 ~~TpLH~A~~-fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~  616 (1092)
                      +.+.+++|+. +++.+++++|+..|++         +.||||+||.+|+    +..+++|++.|+.....+         
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~---------~~T~Lh~Aa~~G~----~e~v~~Ll~~ga~~~~~~---------  122 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKKGIK---------SEVICFVAAITGC----SSALDTLCLLLTSDEIVK---------  122 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHHTCC---------HHHHHHHHHHHCC----HHHHHHHTTC--CCSSCC---------
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCC---------cCCHHHHHHHcCC----HHHHHHHHHcCCcHHHHH---------
Confidence            3567888877 6889999999999875         5699999999986    444567888776211110         


Q ss_pred             hHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHH
Q 001365          617 LRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLV  696 (1092)
Q Consensus       617 ~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~Lv  696 (1092)
                                         .                   .+..+.+|||.|+..|+.+                    ++
T Consensus       123 -------------------~-------------------~~~~~~tpL~~Aa~~G~~e--------------------iv  144 (376)
T 2aja_A          123 -------------------V-------------------IQAENYQAFRLAAENGHLH--------------------VL  144 (376)
T ss_dssp             ----------------------------------------CHHHHHHHHHHHHTTCHH--------------------HH
T ss_pred             -------------------H-------------------hccCCCCHHHHHHHcCCHH--------------------HH
Confidence                               0                   0124567888888877653                    88


Q ss_pred             HHHHhCCCCC---CcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccc--cCCCCccHHHHHH-HcCCHHHHHHHHHcCC
Q 001365          697 QKAAEGGKGP---CVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINF--RDVNGWTALHWAA-YCGRERTVASLIALGA  770 (1092)
Q Consensus       697 klLle~Gadv---N~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~--~D~~G~TpLH~Aa-~~G~~eiV~~LLe~GA  770 (1092)
                      ++|+++|+++   +..+.. .||||+||..|+.++|++|+++|++++.  +|..|+||||+|| ..|+.++|++|++.|+
T Consensus       145 ~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga  223 (376)
T 2aja_A          145 NRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV  223 (376)
T ss_dssp             HHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             HHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC
Confidence            8999999763   322333 9999999999999999999999999998  9999999999999 9999999999999774


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccC
Q 001365          771 APGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNK  820 (1092)
Q Consensus       771 din~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD  820 (1092)
                                   .|.||||+|+.+|+.+++++|+++|     ++++.++
T Consensus       224 -------------~~~taL~~Aa~~g~~evv~lL~~~g-----a~~~~~~  255 (376)
T 2aja_A          224 -------------MLAYAEIHEFEYGEKYVNPFIARHV-----NRLKEMH  255 (376)
T ss_dssp             -------------HHHHHHHCTTTTTTTTHHHHHHHHH-----HHHHHHH
T ss_pred             -------------ccchHHHHHHHCCCHHHHHHHHhcC-----ccccccc
Confidence                         3789999999999999999999988     5555544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=1.3e-19  Score=170.98  Aligned_cols=108  Identities=29%  Similarity=0.315  Sum_probs=101.7

Q ss_pred             cccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 001365          708 VLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRT  787 (1092)
Q Consensus       708 ~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~T  787 (1092)
                      .+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+||..|+.++|++|+++|++++.      +|..|+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~------~d~~g~t   77 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA------RSKDGNT   77 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTC------CCTTCCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcc------cCCCCCC
Confidence            4788999999999999999999999999999999999999999999999999999999999999887      7789999


Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH
Q 001365          788 PADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA  826 (1092)
Q Consensus       788 PLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta  826 (1092)
                      |||+|+..|+.+++++|+++|     ++++.++..|.++
T Consensus        78 pl~~A~~~~~~~~~~~Ll~~g-----a~~n~~~~~~~~~  111 (115)
T 2l6b_A           78 PEHLAKKNGHHEIVKLLDAKG-----ADVNARSWGSSHH  111 (115)
T ss_dssp             TTHHHHTTTCHHHHHHHHTTS-----SSHHHHSCCCC--
T ss_pred             HHHHHHHCCCHHHHHHHHHcC-----CCCCcCCcccccc
Confidence            999999999999999999998     7899999998665

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.79  E-value=2.5e-19  Score=192.83  Aligned_cols=123  Identities=27%  Similarity=0.304  Sum_probs=110.9

Q ss_pred             CcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCC
Q 001365          659 DDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVN  738 (1092)
Q Consensus       659 ~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gad  738 (1092)
                      .|.||||.|+..++..                    +++.|++ |+++|.+|..|+||||+||..|+.++|++||++|++
T Consensus        44 ~g~t~L~~A~~~g~~~--------------------~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  102 (244)
T 3ui2_A           44 EYETPWWTAARKADEQ--------------------ALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD  102 (244)
T ss_dssp             HHHHHHHHHHTTTCHH--------------------HHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHcCCHH--------------------HHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            5677777777665542                    6778888 999999999999999999999999999999999999


Q ss_pred             ccccC-CCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHH----------------HcCcHHHH
Q 001365          739 INFRD-VNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLAS----------------SIGHKGIA  801 (1092)
Q Consensus       739 in~~D-~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa----------------~~G~~eiv  801 (1092)
                      +|.+| ..|+||||+||..|+.++|++|+++|++++.      +|..|+||||+|+                ..|+.+++
T Consensus       103 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~------~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv  176 (244)
T 3ui2_A          103 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV------EDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVI  176 (244)
T ss_dssp             TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHH
Confidence            99999 8899999999999999999999999999987      7789999988887                67899999


Q ss_pred             HHHHHcC
Q 001365          802 GYLAESD  808 (1092)
Q Consensus       802 ~~LLe~G  808 (1092)
                      ++|++.+
T Consensus       177 ~~L~~~~  183 (244)
T 3ui2_A          177 NVLEGQV  183 (244)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9999865

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.76  E-value=1.9e-18  Score=198.47  Aligned_cols=109  Identities=24%  Similarity=0.237  Sum_probs=104.8

Q ss_pred             HHHHHHhCCCCCCccc--CCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCC
Q 001365          695 LVQKAAEGGKGPCVLD--HCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP  772 (1092)
Q Consensus       695 LvklLle~GadvN~~D--~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdi  772 (1092)
                      +++.|+++|+++|..|  ..|.||||+||..|+.++|++||++|+++|.+|..|+||||+|+..|+.++|++||++|+++
T Consensus       215 ~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~  294 (368)
T 3jue_A          215 TMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL  294 (368)
T ss_dssp             HHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCC
Confidence            7788999999999998  89999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          773 GALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       773 n~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                      ++      +|..|.||||+|+..|+.+++++|+..+.
T Consensus       295 ~~------~d~~G~TpL~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          295 GA------RDSEGRDPLTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             TC------CCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             CC------cCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            87      78999999999999999999999999873

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.76  E-value=7.4e-19  Score=184.95  Aligned_cols=122  Identities=22%  Similarity=0.180  Sum_probs=108.0

Q ss_pred             ccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCCCCCC
Q 001365          709 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL-GAAPGALSDPTPKYPSGRT  787 (1092)
Q Consensus       709 ~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~-GAdin~~~D~n~~D~~G~T  787 (1092)
                      .+..|.||||+||..|+.++|++||+.|++++.+|..|+||||+||..|+.++|++||++ |++++.      +|..|+|
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~------~d~~g~t  142 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ------QNKLGDT  142 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCC------CCTTSCC
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccc------cCCCCCC
Confidence            577899999999999999999999999999999999999999999999999999999999 999887      7899999


Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH-HHHhhhhhccccccC
Q 001365          788 PADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA-EVTGATAVQTVPQRC  841 (1092)
Q Consensus       788 PLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta-~iaa~~~v~~l~~~~  841 (1092)
                      |||+|+..|+.+++++|+++|     ++++++|..|.++ .++.......+++..
T Consensus       143 pL~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~g~t~l~~A~~~~~~~~l~~l  192 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLLAKG-----ARTDLRNIEKKLAFDMATNAACASLLKKK  192 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHT-----CCSCCCCTTSCCHHHHCCSHHHHHHHC--
T ss_pred             HHHHHHHcCCHHHHHHHHHcC-----CCCccccCCCCCHHHHhcchhHHHHHHHH
Confidence            999999999999999999998     7899999999666 444444444444333

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.76  E-value=1.7e-18  Score=193.16  Aligned_cols=108  Identities=23%  Similarity=0.225  Sum_probs=102.9

Q ss_pred             HHHHHHhCCCCCCc------ccCCCCcHHHHHHHc---CCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHH
Q 001365          695 LVQKAAEGGKGPCV------LDHCGQGVLHFAAAL---GYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASL  765 (1092)
Q Consensus       695 LvklLle~GadvN~------~D~~G~TpLH~AA~~---G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~L  765 (1092)
                      .++.|++.|++++.      .|..|.||||+||..   |+.++|++||++|+++|.+|..|+||||+||..|+.++|++|
T Consensus       166 ~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~L  245 (301)
T 2b0o_E          166 SVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL  245 (301)
T ss_dssp             HHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            56667899999998      699999999999997   899999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          766 IALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       766 Le~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      |++||++++      +|..|.||||+|+..|+.+++++|+++|
T Consensus       246 l~~gad~~~------~d~~G~TpL~~A~~~~~~~iv~~Ll~~g  282 (301)
T 2b0o_E          246 LKGRALVGT------VNEAGETALDIARKKHHKECEELLEQAQ  282 (301)
T ss_dssp             HHTTCCCSC------CCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHcCCCCCC------cCCCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence            999999887      7899999999999999999999999988

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.75  E-value=2.2e-18  Score=176.65  Aligned_cols=111  Identities=22%  Similarity=0.153  Sum_probs=102.8

Q ss_pred             ccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC-CCCCC
Q 001365          709 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKY-PSGRT  787 (1092)
Q Consensus       709 ~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D-~~G~T  787 (1092)
                      .+..|.||||+||..|+.++|+.|++ |+++|.+|..|+||||+||..|+.++|++|+++|+++|.      +| ..|+|
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------~~~~~g~t  112 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH------RDMRGGLT  112 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC------CCSSSSCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------CCCCCCCC
Confidence            35678999999999999999999999 999999999999999999999999999999999999987      55 88999


Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHhh
Q 001365          788 PADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGA  831 (1092)
Q Consensus       788 PLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa~  831 (1092)
                      |||+|+..|+.+++++|+++|     ++++.+|..|.|+...+.
T Consensus       113 pL~~A~~~~~~~~v~~Ll~~g-----a~~~~~d~~g~tpl~~A~  151 (183)
T 3deo_A          113 ALHMAAGYVRPEVVEALVELG-----ADIEVEDERGLTALELAR  151 (183)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHT-----CCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHcC-----CCCcCCCCCCCCHHHHHH
Confidence            999999999999999999998     789999999977755444

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.74  E-value=7.2e-18  Score=193.66  Aligned_cols=150  Identities=15%  Similarity=0.099  Sum_probs=112.4

Q ss_pred             ccChHHHHHHHc-CCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHh
Q 001365          537 QEAENCKWSCMF-GEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSE  615 (1092)
Q Consensus       537 ~~~TpLH~A~~f-G~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~  615 (1092)
                      ...|+||+||.. |++++++.||+.|++++....+..|.||||+||..|+    +.                        
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~----~~------------------------  249 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS----LL------------------------  249 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTC----HH------------------------
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCC----HH------------------------
Confidence            345799999999 9999999999999998865544779999999997763    11                        


Q ss_pred             hhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHH
Q 001365          616 NLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWL  695 (1092)
Q Consensus       616 ~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~L  695 (1092)
                                                                                                     +
T Consensus       250 -------------------------------------------------------------------------------i  250 (368)
T 3jue_A          250 -------------------------------------------------------------------------------A  250 (368)
T ss_dssp             -------------------------------------------------------------------------------H
T ss_pred             -------------------------------------------------------------------------------H
Confidence                                                                                           4


Q ss_pred             HHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 001365          696 VQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGAL  775 (1092)
Q Consensus       696 vklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~  775 (1092)
                      +++|+++|+++|.+|..|+||||+|+..|+.++|++||++|++++.+|..|+||||+|+..|+.++|++|+..|..... 
T Consensus       251 v~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~-  329 (368)
T 3jue_A          251 CEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAE-  329 (368)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc-
Confidence            4556777889999999999999999999999999999999999999999999999999999999999999988754322 


Q ss_pred             CCCCCCCCCCCCHHHHHHHcC
Q 001365          776 SDPTPKYPSGRTPADLASSIG  796 (1092)
Q Consensus       776 ~D~n~~D~~G~TPLhlAa~~G  796 (1092)
                        ....+..+.|+|+++....
T Consensus       330 --~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          330 --AAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             ---------------------
T ss_pred             --ccccCCCCCCHHHHHHHHH
Confidence              2335678899999877654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.72  E-value=1e-17  Score=180.29  Aligned_cols=110  Identities=22%  Similarity=0.149  Sum_probs=102.1

Q ss_pred             cCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCC-CCCCCH
Q 001365          710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKY-PSGRTP  788 (1092)
Q Consensus       710 D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D-~~G~TP  788 (1092)
                      +..|.||||+||..|+.++|+.||+ |+++|.+|..|+||||+||..|+.++|++||++|+++|.      +| ..|+||
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~------~~~~~g~t~  114 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH------RDMRGGLTA  114 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC------CCSSSCCCH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCc------CCCCCCCCH
Confidence            4568999999999999999999999 999999999999999999999999999999999999987      55 789999


Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHhh
Q 001365          789 ADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGA  831 (1092)
Q Consensus       789 LhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa~  831 (1092)
                      ||+|+..|+.+++++|+++|     ++++.+|..|.|+...+.
T Consensus       115 L~~A~~~g~~~~v~~Ll~~g-----a~~~~~d~~g~t~l~~A~  152 (244)
T 3ui2_A          115 LHMAAGYVRPEVVEALVELG-----ADIEVEDERGLTALELAR  152 (244)
T ss_dssp             HHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCC-----CCCCCCCCCCCcHHHHHH
Confidence            99999999999999999998     789999999987755544

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.72  E-value=3e-17  Score=180.92  Aligned_cols=131  Identities=12%  Similarity=0.014  Sum_probs=112.7

Q ss_pred             cChHHHHHHHcCCcHHHHHHHHCCCCCC----CCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcH
Q 001365          538 EAENCKWSCMFGEIEVPAEIVAGGVLRC----HTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDIT  613 (1092)
Q Consensus       538 ~~TpLH~A~~fG~veVv~~LL~~Gadin----~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~Tp  613 (1092)
                      ..++|+.|+..|+++.+..+++.|++++    ....+..|.||||+||..+..                           
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~---------------------------  182 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDR---------------------------  182 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCT---------------------------
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhccc---------------------------
Confidence            3578999999999999999999999866    223467789999999876410                           


Q ss_pred             HhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHH
Q 001365          614 SENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQV  693 (1092)
Q Consensus       614 L~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~  693 (1092)
                                                                               +.                    .
T Consensus       183 ---------------------------------------------------------~~--------------------~  185 (278)
T 1dcq_A          183 ---------------------------------------------------------TS--------------------L  185 (278)
T ss_dssp             ---------------------------------------------------------TT--------------------H
T ss_pred             ---------------------------------------------------------ch--------------------H
Confidence                                                                     00                    0


Q ss_pred             HHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCC
Q 001365          694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP  772 (1092)
Q Consensus       694 ~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdi  772 (1092)
                      -++++|+++|+++|.+|..|+||||+||..|+.++|++||++|++++.+|..|+||||+|+..|+.++|++|+++|++.
T Consensus       186 ~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          186 HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            0566778889999999999999999999999999999999999999999999999999999999999999999999975

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.72  E-value=1.6e-17  Score=151.33  Aligned_cols=93  Identities=28%  Similarity=0.296  Sum_probs=85.3

Q ss_pred             CcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCC
Q 001365          659 DDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVN  738 (1092)
Q Consensus       659 ~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gad  738 (1092)
                      +|+||||.|+..+...                    ++++|++.|+++|.+|..|+||||+|+..|+.++|++|+++|++
T Consensus         1 ~g~t~L~~A~~~~~~~--------------------~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~   60 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLE--------------------VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD   60 (93)
T ss_dssp             --CCHHHHHHHHTCHH--------------------HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCcHHHHHHHcCCHH--------------------HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            3678898888766542                    78889999999999999999999999999999999999999999


Q ss_pred             ccccCCCCccHHHHHHHcCCHHHHHHHHHcCCC
Q 001365          739 INFRDVNGWTALHWAAYCGRERTVASLIALGAA  771 (1092)
Q Consensus       739 in~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAd  771 (1092)
                      ++.+|..|+||||+|+..|+.++|++|+++||+
T Consensus        61 ~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999985

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=2.3e-17  Score=155.57  Aligned_cols=93  Identities=28%  Similarity=0.262  Sum_probs=85.7

Q ss_pred             CCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 001365          706 PCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSG  785 (1092)
Q Consensus       706 vN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G  785 (1092)
                      ++..|.+|.||||+||..|+.++|++|+++|++++.+|..|+||||+||..|+.++|++|+++|++++.      +|..|
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~------~d~~g   90 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA------QDKFG   90 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTS
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc------cccCC
Confidence            445788999999999999999999999999999999999999999999999999999999999999887      77999


Q ss_pred             CCHHHHHHHcCcHHHHHHH
Q 001365          786 RTPADLASSIGHKGIAGYL  804 (1092)
Q Consensus       786 ~TPLhlAa~~G~~eiv~~L  804 (1092)
                      +||||+|+..|+.+++++|
T Consensus        91 ~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           91 KTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHh
Confidence            9999999999999999987

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.68  E-value=1.4e-17  Score=157.02  Aligned_cols=108  Identities=22%  Similarity=0.165  Sum_probs=97.5

Q ss_pred             cCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHC
Q 001365          656 DENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVA  735 (1092)
Q Consensus       656 ~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~  735 (1092)
                      .+..|+++||.|+..+...                    +++.|+++|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus         5 ~d~~g~t~L~~A~~~~~~~--------------------~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~   64 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAE--------------------EVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK   64 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHH--------------------HHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTT
T ss_pred             cCCCCCCHHHHHHHcCCHH--------------------HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            3578999999998876643                    77889999999999999999999999999999999999999


Q ss_pred             CCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHH
Q 001365          736 GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPA  789 (1092)
Q Consensus       736 Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPL  789 (1092)
                      |++++.+|..|+||||+|+..|+.+++++|+++|+++|.      ++..|.||-
T Consensus        65 g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~------~~~~~~~~~  112 (115)
T 2l6b_A           65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA------RSWGSSHHH  112 (115)
T ss_dssp             TCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHH------HSCCCC---
T ss_pred             CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCc------CCccccccc
Confidence            999999999999999999999999999999999999988      667888873

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.53  E-value=1.7e-14  Score=135.91  Aligned_cols=89  Identities=22%  Similarity=0.159  Sum_probs=81.9

Q ss_pred             CCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCC
Q 001365          657 ENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAG  736 (1092)
Q Consensus       657 d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~G  736 (1092)
                      +.+++++||.|+..+...                    +++.|++.|+++|.+|..|.||||+||..|+.++|++|+++|
T Consensus        21 ~~~g~t~L~~A~~~g~~~--------------------~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g   80 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDD--------------------EVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG   80 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHH--------------------HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCccchHHHHHHHcCCHH--------------------HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            468888998888766543                    778899999999999999999999999999999999999999


Q ss_pred             CCccccCCCCccHHHHHHHcCCHHHHHHH
Q 001365          737 VNINFRDVNGWTALHWAAYCGRERTVASL  765 (1092)
Q Consensus       737 adin~~D~~G~TpLH~Aa~~G~~eiV~~L  765 (1092)
                      ++++.+|..|+||||+|+..|+.+++++|
T Consensus        81 a~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           81 ADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999999987

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=99.50  E-value=2.1e-14  Score=183.86  Aligned_cols=144  Identities=23%  Similarity=0.273  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhhhhhhhHHHHhhhcCCCCCCchHHHhHHHH-HHh---cCCCCCchhHHHHHHHHHHHhhhHHHHHHHHH
Q 001365          867 TQAAARIHQVFRVQSFQKKQLKEYGNDTFGISDERALSLVA-VKT---QKPGHHDEPVHAAATRIQNKFRSWKGRKDFLI  942 (1092)
Q Consensus       867 ~qAAarIQqafR~~S~rrkq~~~~~~d~~~~~~e~a~sl~a-~k~---~~~~r~~~~l~~AA~~IQ~~~Rg~~~Rk~fl~  942 (1092)
                      ..+|..||..+|++..+++-...         ...+..+.+ .|.   ++..+ ......||+.||+.||||+.|+.|..
T Consensus       768 ~~aa~~IQa~~Rg~l~Rk~~~~~---------r~aai~IQ~~~Rg~~aR~~~~-~lr~~~AAi~IQs~~Rg~~~Rk~y~~  837 (1080)
T 2dfs_A          768 RAACIRIQKTIRGWLMRKKYMRM---------RRAAITIQRYVRGHQARCYAT-FLRRTRAAIIIQKFQRMYVVRKRYQC  837 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHhhHHHHHHHHH
Confidence            35788999999998877552211         000111110 000   00000 01134455555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccccccccccccccccccccCCccchHHHHHHHHHH
Q 001365          943 IRKQIIKIQAYVRGHQVRKNYKKIIW--SVGIMEKIILRWRRRGSGLRGFKSETLTASSSMVATSAKEDDYDFLKEGRKQ 1020 (1092)
Q Consensus       943 ~r~~av~IQa~~Rg~~aRk~y~~~~~--a~~~iqk~irr~r~kr~glrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~rkq 1020 (1092)
                      +|.+++.||++|||+++|++|+.++.  ++.+||+.+|+|+.|+.                                   
T Consensus       838 lr~aai~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~-----------------------------------  882 (1080)
T 2dfs_A          838 MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVH-----------------------------------  882 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHH-----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
Confidence            55555555555555555555554442  44555555554433322                                   


Q ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q 001365         1021 KEERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQ 1056 (1092)
Q Consensus      1021 ~~~~~~~A~~~vQs~~R~~~AR~~yrrl~~~~~~~~ 1056 (1092)
                       +.+.++|+++||++||++.||++|++|+.+++...
T Consensus       883 -y~~~~~aai~iQs~~R~~laRr~~~~Lk~ear~~~  917 (1080)
T 2dfs_A          883 -YHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVE  917 (1080)
T ss_dssp             -TTTTHHHHHHHHHHHHHHHHHHHTTTC--------
T ss_pred             -HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence             33456899999999999999999999988876544

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=99.44  E-value=1.9e-13  Score=175.09  Aligned_cols=125  Identities=26%  Similarity=0.267  Sum_probs=97.4

Q ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccccccccccc
Q 001365          918 EPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKII--WSVGIMEKIILRWRRRGSGLRGFKSETL  995 (1092)
Q Consensus       918 ~~l~~AA~~IQ~~~Rg~~~Rk~fl~~r~~av~IQa~~Rg~~aRk~y~~~~--~a~~~iqk~irr~r~kr~glrg~~~~~~  995 (1092)
                      +.++.+|+.||+.||||+.|++|+++|.+++.||++|||+++|++|..++  +||.+||+.||+|+.|+...+- +... 
T Consensus       765 ~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~l-r~aa-  842 (1080)
T 2dfs_A          765 DKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCM-RDAT-  842 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHH-HHHH-
Confidence            45788999999999999999999999999999999999999999987654  6999999999999988744321 1000 


Q ss_pred             cccccccccCCccchHHHHHHHHHHH---HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q 001365          996 TASSSMVATSAKEDDYDFLKEGRKQK---EERLQKALARVKSMVQYPEARDQYRRLLNVVNEIQ 1056 (1092)
Q Consensus       996 ~~~~~~~~~~~~~~~~~~~~~~rkq~---~~~~~~A~~~vQs~~R~~~AR~~yrrl~~~~~~~~ 1056 (1092)
                                  -.++.++|.++.++   ..+.++|+++||++||+..+|+.|++++.++..+|
T Consensus       843 ------------i~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQ  894 (1080)
T 2dfs_A          843 ------------IALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ  894 (1080)
T ss_dssp             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence                        12344444432222   22345699999999999999999998877766665

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=99.08  E-value=2.2e-10  Score=96.96  Aligned_cols=51  Identities=37%  Similarity=0.563  Sum_probs=47.8

Q ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001365          918 EPVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYKKIIW  968 (1092)
Q Consensus       918 ~~l~~AA~~IQ~~~Rg~~~Rk~fl~~r~~av~IQa~~Rg~~aRk~y~~~~~  968 (1092)
                      +.++.||+.||+.||||..|+.|+.++.+++.||++|||+++|+.|..++.
T Consensus         2 ~~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~   52 (58)
T 2ix7_C            2 DKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRR   52 (58)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999988863

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=98.82  E-value=5.9e-09  Score=84.74  Aligned_cols=44  Identities=27%  Similarity=0.290  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 001365          920 VHAAATRIQNKFRSWKGRKDFLIIRK--QIIKIQAYVRGHQVRKNY  963 (1092)
Q Consensus       920 l~~AA~~IQ~~~Rg~~~Rk~fl~~r~--~av~IQa~~Rg~~aRk~y  963 (1092)
                      +..+++.||+.+|||..|+.|..+++  ++++||++||||.+|+.|
T Consensus         2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y   47 (48)
T 1n2d_C            2 ISQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV   47 (48)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence            45789999999999999999999998  999999999999999987

>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1

Probab=98.61  E-value=2.7e-11  Score=112.79  Aligned_cols=84  Identities=38%  Similarity=0.739  Sum_probs=73.1

Q ss_pred             ceEEEeeccccccCCCCeeEEEEecCcCCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCC
Q 001365          507 LYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLS  586 (1092)
Q Consensus       507 ~fsI~dfSP~wa~s~~~tKVlI~G~fl~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~  586 (1092)
                      .+.|+||+|+|++..|+|||+|+|.|+....     +|.|+||+.+++..+++.|+.+|.+|++..|..||++.+.+.. 
T Consensus         6 ~~~Itd~sP~~gp~sGGTkv~I~G~~L~~gs-----~~~~~fG~~~vpa~~~s~~vl~C~tPp~~~G~v~~~v~~d~~~-   79 (95)
T 2cxk_A            6 SGMVTDYSPEWSYPEGGVKVLITGPWQEASN-----NYSCLFDQISVPASLIQPGVLRCYCPAHDTGLVTLQVAFNNQI-   79 (95)
T ss_dssp             CSCCCEEECSEECTTCCCEEEEESSCCCCSS-----CEEEEETTEEEECEEEETTEEEEECCCCCSEEEEEEEEETTEE-
T ss_pred             cEEEEEECCCcccCCCCEEEEEEeECCCCCc-----cEEEEECCEEEeEEEeECCEEEEEecCCCCceEeEEEEECCee-
Confidence            5689999999999999999999999997653     5999999999888889999999999999999999999987654 


Q ss_pred             chhHHHHHHH
Q 001365          587 CSEVREFEYR  596 (1092)
Q Consensus       587 ~seVv~fe~L  596 (1092)
                      +++...|+|.
T Consensus        80 ~s~~~~FeY~   89 (95)
T 2cxk_A           80 ISNSVVFEYK   89 (95)
T ss_dssp             CSCCEEEEEC
T ss_pred             cCCceEEEEe
Confidence            4666666554

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=98.59  E-value=1.1e-07  Score=80.41  Aligned_cols=49  Identities=31%  Similarity=0.331  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccCCccchHHHHHHHHHHH
Q 001365          942 IIRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIILRWRRRGSGLRGFKSETLTASSSMVATSAKEDDYDFLKEGRKQK 1021 (1092)
Q Consensus       942 ~~r~~av~IQa~~Rg~~aRk~y~~~~~a~~~iqk~irr~r~kr~glrg~~~~~~~~~~~~~~~~~~~~~~~~~~~~rkq~ 1021 (1092)
                      ++..+++.||++||||++|++|+.++                                                      
T Consensus         3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r------------------------------------------------------   28 (58)
T 2ix7_C            3 KLRAACIRIQKTIRGWLLRKRYLCMQ------------------------------------------------------   28 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------------
Confidence            35678999999999999999998763                                                      


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 001365         1022 EERLQKALARVKSMVQYPEARDQYRRLL 1049 (1092)
Q Consensus      1022 ~~~~~~A~~~vQs~~R~~~AR~~yrrl~ 1049 (1092)
                           +|++.||++|||..||+.|+.|+
T Consensus        29 -----~aai~IQ~~~Rg~~aR~~~~~~r   51 (58)
T 2ix7_C           29 -----RAAITVQRYVRGYQARCYAKFLR   51 (58)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHH
Confidence                 56788888888888988888884

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=98.34  E-value=5.1e-07  Score=73.24  Aligned_cols=43  Identities=14%  Similarity=0.228  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcc
Q 001365          943 IRKQIIKIQAYVRGHQVRKNYKKIIW--SVGIMEKIILRWRRRGS  985 (1092)
Q Consensus       943 ~r~~av~IQa~~Rg~~aRk~y~~~~~--a~~~iqk~irr~r~kr~  985 (1092)
                      ++.+++.||++|||+++|++|..+++  |+.+||+.+|+|..++.
T Consensus         2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~   46 (48)
T 1n2d_C            2 ISQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRAN   46 (48)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence            57899999999999999999999887  99999999999987764

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=97.58  E-value=0.00014  Score=62.55  Aligned_cols=47  Identities=26%  Similarity=0.338  Sum_probs=40.7

Q ss_pred             chhHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 001365          917 DEPVHAAATRIQNKFRSWKGRKDFLII---RKQIIKIQAYVRGHQVRKNY  963 (1092)
Q Consensus       917 ~~~l~~AA~~IQ~~~Rg~~~Rk~fl~~---r~~av~IQa~~Rg~~aRk~y  963 (1092)
                      ++.+...++.||+..|||..|++|.++   +.++..||.++|+|..++..
T Consensus         2 d~~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w   51 (64)
T 1wdc_A            2 DERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW   51 (64)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            567788899999999999999999998   67778999999999998754

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=97.39  E-value=0.00011  Score=92.04  Aligned_cols=49  Identities=22%  Similarity=0.266  Sum_probs=43.3

Q ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 001365          918 EPVHAAATRIQNKFRSWKGRKDFLII---RKQIIKIQAYVRGHQVRKNYKKI  966 (1092)
Q Consensus       918 ~~l~~AA~~IQ~~~Rg~~~Rk~fl~~---r~~av~IQa~~Rg~~aRk~y~~~  966 (1092)
                      +.+..+|+.||+.+|||+.||+|+++   |.++++||++||||++||+|.-+
T Consensus       776 ~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~w~  827 (837)
T 1kk8_A          776 ERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWW  827 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHH
Confidence            56788899999999999999999999   67899999999999999987544

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=97.36  E-value=0.00023  Score=60.97  Aligned_cols=45  Identities=24%  Similarity=0.273  Sum_probs=34.7

Q ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 001365          919 PVHAAATRIQNKFRSWKGRKDFLII---RKQIIKIQAYVRGHQVRKNY  963 (1092)
Q Consensus       919 ~l~~AA~~IQ~~~Rg~~~Rk~fl~~---r~~av~IQa~~Rg~~aRk~y  963 (1092)
                      .+...++.||+..|||..|++|.++   +.++..||+++|+|..++..
T Consensus         2 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w   49 (63)
T 2bl0_A            2 RIGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW   49 (63)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            3556777888888888888888888   66677888888888887643

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=97.25  E-value=0.00048  Score=59.03  Aligned_cols=43  Identities=23%  Similarity=0.250  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Q 001365          942 IIRKQIIKIQAYVRGHQVRKNYKKI---IWSVGIMEKIILRWRRRG  984 (1092)
Q Consensus       942 ~~r~~av~IQa~~Rg~~aRk~y~~~---~~a~~~iqk~irr~r~kr  984 (1092)
                      ++...++.||+++||+++|+.|+++   +.|+.+||+.+|.|...+
T Consensus         2 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr   47 (63)
T 2bl0_A            2 RIGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK   47 (63)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3556789999999999999999998   568889999999987655

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=97.24  E-value=0.0006  Score=58.55  Aligned_cols=43  Identities=30%  Similarity=0.477  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Q 001365          942 IIRKQIIKIQAYVRGHQVRKNYKKI---IWSVGIMEKIILRWRRRG  984 (1092)
Q Consensus       942 ~~r~~av~IQa~~Rg~~aRk~y~~~---~~a~~~iqk~irr~r~kr  984 (1092)
                      ++...++.||+++||+++|+.|+++   +.|+.+||+.+|.|...+
T Consensus         4 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~   49 (64)
T 1wdc_A            4 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR   49 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4567799999999999999999998   568889999999887654

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.21  E-value=0.001  Score=87.01  Aligned_cols=49  Identities=20%  Similarity=0.221  Sum_probs=40.5

Q ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 001365          918 EPVHAAATRIQNKFRSWKGRKDFLIIR---KQIIKIQAYVRGHQVRKNYKKI  966 (1092)
Q Consensus       918 ~~l~~AA~~IQ~~~Rg~~~Rk~fl~~r---~~av~IQa~~Rg~~aRk~y~~~  966 (1092)
                      +.+..+++.||+.+|||+.|++|.+++   .+++.||++||+|++||.|..+
T Consensus       789 ~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~~~  840 (1184)
T 1i84_S          789 LKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWM  840 (1184)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            346678899999999999999999885   5788999999999999876443

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=96.56  E-value=0.0032  Score=79.08  Aligned_cols=46  Identities=28%  Similarity=0.391  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Q 001365          939 DFLIIRKQIIKIQAYVRGHQVRKNYKKI---IWSVGIMEKIILRWRRRG  984 (1092)
Q Consensus       939 ~fl~~r~~av~IQa~~Rg~~aRk~y~~~---~~a~~~iqk~irr~r~kr  984 (1092)
                      +-.++.+.++.||++||||++||+|+++   +.|+.+||+.+|+|..+|
T Consensus       774 r~~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r  822 (837)
T 1kk8_A          774 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR  822 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3456677899999999999999999998   578899999999998776

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.08  E-value=0.0093  Score=78.08  Aligned_cols=50  Identities=24%  Similarity=0.171  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcc
Q 001365          936 GRKDFLIIRKQIIKIQAYVRGHQVRKNYKKII---WSVGIMEKIILRWRRRGS  985 (1092)
Q Consensus       936 ~Rk~fl~~r~~av~IQa~~Rg~~aRk~y~~~~---~a~~~iqk~irr~r~kr~  985 (1092)
                      ...+-.++...++.||++||||++|++|++++   .|+.+||+.||+|..+|.
T Consensus       784 E~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~  836 (1184)
T 1i84_S          784 EEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH  836 (1184)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33344566778999999999999999999885   588899999999988874

>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}

Probab=94.80  E-value=0.067  Score=53.12  Aligned_cols=32  Identities=19%  Similarity=0.122  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001365          944 RKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEK  975 (1092)
Q Consensus       944 r~~av~IQa~~Rg~~aRk~y~~~~~a~~~iqk  975 (1092)
                      +.++|+||+.+|||++||+|+-.+.+...+..
T Consensus        45 ~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~   76 (148)
T 3gn4_A           45 AEACIKMQKTIRMWLCKRRHKPRIDGLVKVGT   76 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            45789999999999999999888766654433

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=94.75  E-value=0.033  Score=71.44  Aligned_cols=45  Identities=7%  Similarity=0.027  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001365          919 PVHAAATRIQNKFRSWKGRKDFLIIRKQIIKIQAYVRGHQVRKNYK  964 (1092)
Q Consensus       919 ~l~~AA~~IQ~~~Rg~~~Rk~fl~~r~~av~IQa~~Rg~~aRk~y~  964 (1092)
                      .+..+|+.||+ +|||..|++|+++|++++.||..+|++..|+.+.
T Consensus       773 ~~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~~  817 (1052)
T 4anj_A          773 DPDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEAV  817 (1052)
T ss_dssp             CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            46677777775 7999999999999999999999999988776543

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=89.06  E-value=0.29  Score=61.17  Aligned_cols=31  Identities=29%  Similarity=0.387  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001365          940 FLIIRKQIIKIQAYVRGHQVRKNYKKIIWSV  970 (1092)
Q Consensus       940 fl~~r~~av~IQa~~Rg~~aRk~y~~~~~a~  970 (1092)
                      -.++.+.++.||++||||++||+|++++.|+
T Consensus       764 ~~~l~~~~~~iQ~~~Rg~l~R~~~~~~r~a~  794 (795)
T 1w7j_A          764 ADKLRAACIRIQKTIRGWLMRKKYMRMRRGD  794 (795)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3456678999999999999999999987654

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=86.04  E-value=0.3  Score=61.05  Aligned_cols=31  Identities=32%  Similarity=0.591  Sum_probs=26.3

Q ss_pred             chhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001365          917 DEPVHAAATRIQNKFRSWKGRKDFLIIRKQI  947 (1092)
Q Consensus       917 ~~~l~~AA~~IQ~~~Rg~~~Rk~fl~~r~~a  947 (1092)
                      .+.+..+|+.||+.+|||+.||+|+++|+++
T Consensus       764 ~~~l~~~~~~iQ~~~Rg~l~R~~~~~~r~a~  794 (795)
T 1w7j_A          764 ADKLRAACIRIQKTIRGWLMRKKYMRMRRGD  794 (795)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3457889999999999999999999999865

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=85.64  E-value=0.7  Score=59.41  Aligned_cols=35  Identities=14%  Similarity=0.127  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001365          943 IRKQIIKIQAYVRGHQVRKNYKKIIWSVGIMEKIIL  978 (1092)
Q Consensus       943 ~r~~av~IQa~~Rg~~aRk~y~~~~~a~~~iqk~ir  978 (1092)
                      +.+.++.|| .+|||++||+|+++++++..||+..|
T Consensus       774 ~~~~~~~iq-~~r~~l~r~~~~k~~~~a~~i~~~~r  808 (1052)
T 4anj_A          774 PDHLAELVK-RVNHWLICSRWKKVQWCSLSVIKLKN  808 (1052)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556566 68999999999999999998888655

>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}

Probab=84.65  E-value=0.6  Score=34.30  Aligned_cols=20  Identities=25%  Similarity=0.252  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHhhhHHHHHH
Q 001365          920 VHAAATRIQNKFRSWKGRKD  939 (1092)
Q Consensus       920 l~~AA~~IQ~~~Rg~~~Rk~  939 (1092)
                      ..-+|+.||+.||+|+.|+.
T Consensus         5 Ee~aA~vIQrA~R~yl~rr~   24 (31)
T 2l53_B            5 EEVSAMVIQRAFRRHLLQRS   24 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            34678888888888887765

>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}

Probab=83.82  E-value=0.55  Score=33.44  Aligned_cols=18  Identities=22%  Similarity=0.361  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHhhhHHHHH
Q 001365          921 HAAATRIQNKFRSWKGRK  938 (1092)
Q Consensus       921 ~~AA~~IQ~~~Rg~~~Rk  938 (1092)
                      ..||+.||+.||+|+.|+
T Consensus         6 e~aA~vIQrA~R~yl~~~   23 (27)
T 2kxw_B            6 EVSAIVIQRAYRRYLLKQ   23 (27)
T ss_dssp             HHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            457777787777777654

>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}

Probab=83.13  E-value=0.76  Score=33.75  Aligned_cols=18  Identities=22%  Similarity=0.325  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 001365          945 KQIIKIQAYVRGHQVRKN  962 (1092)
Q Consensus       945 ~~av~IQa~~Rg~~aRk~  962 (1092)
                      .+|+.||..||+|+.|+.
T Consensus         7 ~aA~vIQrA~R~yl~rr~   24 (31)
T 2l53_B            7 VSAMVIQRAFRRHLLQRS   24 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            478999999999999874

>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}

Probab=82.28  E-value=0.7  Score=32.90  Aligned_cols=17  Identities=24%  Similarity=0.172  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 001365          945 KQIIKIQAYVRGHQVRK  961 (1092)
Q Consensus       945 ~~av~IQa~~Rg~~aRk  961 (1092)
                      .+|+.||..||+|+.|+
T Consensus         7 ~aA~vIQrA~R~yl~~~   23 (27)
T 2kxw_B            7 VSAIVIQRAYRRYLLKQ   23 (27)
T ss_dssp             HHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            57899999999999875

>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}

Probab=80.70  E-value=7.7  Score=38.51  Aligned_cols=22  Identities=5%  Similarity=0.078  Sum_probs=17.7

Q ss_pred             HHHHHHHHhhccHHHHHHHHHH
Q 001365         1027 KALARVKSMVQYPEARDQYRRL 1048 (1092)
Q Consensus      1027 ~A~~~vQs~~R~~~AR~~yrrl 1048 (1092)
                      +|+++||+.+|++.||+.|+--
T Consensus        46 ~~~i~iQktvR~~L~rkkhkPR   67 (148)
T 3gn4_A           46 EACIKMQKTIRMWLCKRRHKPR   67 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhH
Confidence            5678888888888888888755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1092
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.004
d2cxka1	82	b.1.18.1 (A:872-953) Calmodulin binding transcript	2e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.001
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.002
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.003
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.001
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.003
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-04
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	8e-08
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	1e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.004
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 1e-11
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 717 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS 776
           LH A+ +G+   ++     G + N  +V   T LH AA  G       L+   A      
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA------ 57

Query: 777 DPTPKYPSGRTPADLASSIGHKGIAGYLAE 806
               K    +TP   A+ IGH  +   L E
Sbjct: 58  KVNAKAKDDQTPLHCAARIGHTNMVKLLLE 87

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 1e-10
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 701 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 760
           + G         G   LH A+  G    ++       ++N +   G++ LH AA  G   
Sbjct: 285 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 344

Query: 761 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
            V  L+  GA       P      G TP  +A  +G+  +   L
Sbjct: 345 IVTLLLKNGA------SPNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 2e-06
 Identities = 20/78 (25%), Positives = 31/78 (39%)

Query: 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA 754
           +V+   + G  P V +   +  LH AA  G+    +        +N +  +  T LH AA
Sbjct: 15  IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAA 74

Query: 755 YCGRERTVASLIALGAAP 772
             G    V  L+   A P
Sbjct: 75  RIGHTNMVKLLLENNANP 92

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 2e-06
 Identities = 25/104 (24%), Positives = 33/104 (31%), Gaps = 6/104 (5%)

Query: 701 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 760
           E       +   G   LH AA  G     E       + N    NG T LH A +     
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD 179

Query: 761 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
            V  L+  G        P     +G TP  +A+      +A  L
Sbjct: 180 IVKLLLPRGG------SPHSPAWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 2e-06
 Identities = 16/77 (20%), Positives = 24/77 (31%)

Query: 692 QVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALH 751
            + LV+   +           G   LH AA  G+   +      G + N    +G T L 
Sbjct: 309 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLA 368

Query: 752 WAAYCGRERTVASLIAL 768
            A   G       L  +
Sbjct: 369 IAKRLGYISVTDVLKVV 385

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 9e-06
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 748 TALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAES 807
           T LH A++ G    V +L+  GA       P        TP  +A+  GH  +A YL ++
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGA------SPNVSNVKVETPLHMAARAGHTEVAKYLLQN 55

Query: 808 DLSSALSAISLNKKDGD 824
                     +N K  D
Sbjct: 56  K-------AKVNAKAKD 65

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 1e-05
 Identities = 33/157 (21%), Positives = 44/157 (28%), Gaps = 39/157 (24%)

Query: 706 PCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASL 765
                  G   LH AA  G+   +        N N  + +G T LH  A  G       L
Sbjct: 224 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 283

Query: 766 IALGAAPGALSDP--TP-------------------------KYPSGRTPADLASSIGHK 798
           I  G    A +    TP                         K   G +P   A+  GH 
Sbjct: 284 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 343

Query: 799 GIAGYLAESDLSSALSAISLNKKDGDVAEVTGATAVQ 835
            I   L ++         S N+   D     G T + 
Sbjct: 344 DIVTLLLKNG-------ASPNEVSSD-----GTTPLA 368

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 4e-05
 Identities = 27/110 (24%), Positives = 40/110 (36%), Gaps = 6/110 (5%)

Query: 692 QVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALH 751
           +V + +   E    P      G   LH A        ++     G + +    NG+T LH
Sbjct: 144 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH 203

Query: 752 WAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIA 801
            AA   +     SL+  G +  A S        G TP  LA+  GH  + 
Sbjct: 204 IAAKQNQVEVARSLLQYGGSANAESVQ------GVTPLHLAAQEGHAEMV 247

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.004
 Identities = 23/130 (17%), Positives = 33/130 (25%), Gaps = 39/130 (30%)

Query: 710 DHCGQGVLHFAAALGY---------------------------------DWALEPTTVAG 736
               Q  LH AA +G+                                    +       
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 737 VNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIG 796
            +       G+T LH AA  G+ R    L+   A       P     +G TP  +A    
Sbjct: 123 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA------HPNAAGKNGLTPLHVAVHHN 176

Query: 797 HKGIAGYLAE 806
           +  I   L  
Sbjct: 177 NLDIVKLLLP 186

>d2cxka1 b.1.18.1 (A:872-953) Calmodulin binding transcription activator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: Calmodulin binding transcription activator 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 2e-11
 Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 6/87 (6%)

Query: 510 IIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSS 569
           + D+SP W+Y    VKVLITG +        +  +SC+F +I VPA ++  GVLRC+  +
Sbjct: 2   VTDYSPEWSYPEGGVKVLITGPWQE-----ASNNYSCLFDQISVPASLIQPGVLRCYCPA 56

Query: 570 QKVGRVPFYVTCSNRLSCSEVREFEYR 596
              G V   V  +N++  + V  FEY+
Sbjct: 57  HDTGLVTLQVAFNNQIISNSV-VFEYK 82

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.5 bits (145), Expect = 3e-10
 Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 684 QKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWA---LEPTTVAGVNIN 740
               K  L + +     +  +      +  +   +       D     L+   +    +N
Sbjct: 194 SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN 253

Query: 741 FRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLA 792
            +D NG T L+ AA  G    V +L+  GA      DP     SG  P D  
Sbjct: 254 AQDSNGDTCLNIAARLGNISIVDALLDYGA------DPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (108), Expect = 1e-05
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 1/94 (1%)

Query: 680 EKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNI 739
           E  +Q+LL  ++Q        +            Q   H +         +      +N+
Sbjct: 40  EAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 99

Query: 740 NFR-DVNGWTALHWAAYCGRERTVASLIALGAAP 772
           N   D +G T LHW         V  L+  G+  
Sbjct: 100 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR 133

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (93), Expect = 7e-04
 Identities = 10/45 (22%), Positives = 18/45 (40%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA 754
           D  G   L+ AA LG    ++     G +    + +G   + + A
Sbjct: 256 DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.4 bits (137), Expect = 3e-09
 Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 10/97 (10%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 769
              G   LH AAA GY   L+    A  ++N +D +GWT LH AA+ G+E     L+   
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 770 AAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE 806
                  D       G+T  D+A     + I GYL E
Sbjct: 256 C------DMEAVNKVGQTAFDVAD----EDILGYLEE 282

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.1 bits (92), Expect = 0.001
 Identities = 21/82 (25%), Positives = 27/82 (32%), Gaps = 6/82 (7%)

Query: 725 YDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPS 784
              A +      +N      +G TALH AA  G    +  LI          D   K   
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY------DVNIKDYD 231

Query: 785 GRTPADLASSIGHKGIAGYLAE 806
           G TP   A+  G +     L E
Sbjct: 232 GWTPLHAAAHWGKEEACRILVE 253

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 12/49 (24%), Positives = 18/49 (36%)

Query: 706 PCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA 754
             + D+ G   LH AA  G + A         ++   +  G TA   A 
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 10/59 (16%), Positives = 15/59 (25%), Gaps = 6/59 (10%)

Query: 745 NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGY 803
           +       A   G    V  L+  GA      D       G T    A    +  +  +
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGA------DINYANVDGLTALHQACIDDNVDMVKF 91

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.1 bits (136), Expect = 3e-09
 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTT-VAGVNINFRDVNGWTALHWAAYCGRERTVASLIAL 768
            + G+  LH+AA +     ++      G N + +D +G T +  AA  GR   V  LI  
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 243

Query: 769 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           GA             +  T   LA +  H  I    
Sbjct: 244 GA------SVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.7 bits (117), Expect = 8e-07
 Identities = 13/73 (17%), Positives = 19/73 (26%)

Query: 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWA 753
            +     E G      D  G+  +  AA  G    +      G ++   D    TA   A
Sbjct: 202 IVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA 261

Query: 754 AYCGRERTVASLI 766
                   V    
Sbjct: 262 QANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.0 bits (115), Expect = 1e-06
 Identities = 22/74 (29%), Positives = 24/74 (32%), Gaps = 4/74 (5%)

Query: 717 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP--GA 774
           LH   A G     EP T   VNI     +  T LHW A          LI   A     A
Sbjct: 6   LH-TEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA 63

Query: 775 LSDPTPKYPSGRTP 788
            +D         TP
Sbjct: 64  GADVNAMDCDENTP 77

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 2e-08
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 689 EKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEP-TTVAGVNINFRDVNGW 747
           E +   L+   A+      V    G+  L  A    +   ++       + IN  D +G 
Sbjct: 199 EAITHLLLDHGAD----VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254

Query: 748 TALHWAAYCGRERTVASLIALGAAPGA 774
           TAL  A     ++    L   GA+   
Sbjct: 255 TALLLAVELKLKKIAELLCKRGASTDC 281

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 3e-08
 Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 5/72 (6%)

Query: 735 AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASS 794
            G ++N R   G T L  A        V  L+          +       G+T   LA  
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI-----EINDTDSDGKTALLLAVE 262

Query: 795 IGHKGIAGYLAE 806
           +  K IA  L +
Sbjct: 263 LKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 40/173 (23%), Positives = 50/173 (28%), Gaps = 53/173 (30%)

Query: 703 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDV----------NGWTALHW 752
           G      D  G      AA  G   AL+     G N+N R             G TAL  
Sbjct: 95  GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154

Query: 753 AAYCGRERTVASLIA-LGAAPGALS-------------------------------DPTP 780
           AA  G    +  L+  +GA   A                                 D   
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214

Query: 781 KYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTGATA 833
           +   G+TP  LA    H G+   L E +       I +N  D D     G TA
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQE------HIEINDTDSD-----GKTA 256

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.003
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 716 VLHFAAALGYDWALEPTTVAGVNINFRD-VNGWTALHWAAYCGRERTV 762
           +L  A        ++     G N+NF++   GWT LH A    RE  V
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 23/164 (14%), Positives = 44/164 (26%), Gaps = 16/164 (9%)

Query: 646 LNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKG 705
           +++   SL+     +   +            +  E++ Q L          + A +    
Sbjct: 32  ISANELSLMTLSYKEAIHIF-------LPGTKNMEQVRQLLCLYYAHY--NRNAKQLWSD 82

Query: 706 PCVLDHCGQGVLHFAAALGYDWALEPTTV---AGVNINFRDVNGWTALHWAAYCGRERTV 762
                   + +   AA  G   AL+   +   +   +       + A   AA  G    +
Sbjct: 83  AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVL 142

Query: 763 ASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE 806
             L  L                      LA+  GH  +   L E
Sbjct: 143 NRLCELAPTE----IMAMIQAENYHAFRLAAENGHLHVLNRLCE 182

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 47.6 bits (112), Expect = 4e-06
 Identities = 15/152 (9%), Positives = 34/152 (22%), Gaps = 4/152 (2%)

Query: 656 DENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQK-AAEGGKGPCV--LDHC 712
            E           A    +       ++  LL   + +   +    E G+      +   
Sbjct: 186 TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARH 245

Query: 713 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP 772
              +     A           +   +   +       L           +  L+++    
Sbjct: 246 VNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK 305

Query: 773 GALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
                 T           LA  +G++G    L
Sbjct: 306 ALAPTATIPG-DANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 15/103 (14%), Positives = 26/103 (25%), Gaps = 5/103 (4%)

Query: 708 VLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVN--GWTALHWAAYCGRERTVASL 765
           V+          AA  G+   L              +    + A   AA  G    +  L
Sbjct: 121 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 180

Query: 766 IALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD 808
             L       +    +  +       A   GH  +  +L +  
Sbjct: 181 CELAPTE---ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP 220

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.0 bits (95), Expect = 6e-04
 Identities = 14/131 (10%), Positives = 27/131 (20%), Gaps = 11/131 (8%)

Query: 649 KISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEG-----G 703
            + + L D              E                 +++         +G      
Sbjct: 211 NVINFLLDCPVMLAYAEIH-EFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT 269

Query: 704 KGPCVLDHCGQGVLHFAAALGYDWALE-----PTTVAGVNINFRDVNGWTALHWAAYCGR 758
           K  C+        L           +      P   A         +    L  A   G 
Sbjct: 270 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 329

Query: 759 ERTVASLIALG 769
           +   A L+++ 
Sbjct: 330 QGACALLLSIP 340

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 53.9 bits (129), Expect = 8e-08
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 917 DEPVHAAATRIQNKFRSWKGRKDFLIIRKQ---IIKIQAYVRGHQVRKNYKK 965
           DE +    +  Q   R +  RK +  ++ Q   +  IQ  +R   V +N++ 
Sbjct: 727 DERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQW 778

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 53.6 bits (128), Expect = 1e-07
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 917 DEPVHAAATRIQNKFRSWKGRKDF---LIIRKQIIKIQAYVRGHQVRKNYKKI 966
           D+ +    T  Q + R +  R ++   +  R+ I  IQ  VR     K++  +
Sbjct: 731 DDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHWPWM 783

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG 769
           D+ G+  LH+AAA+    A+    +   N + +D    T L  AA  G      +L+   
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 179

Query: 770 AAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYL 804
           A      +        R P D+AS   H  I   L
Sbjct: 180 A------NREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 7e-04
 Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 1/32 (3%)

Query: 735 AGVNINFR-DVNGWTALHWAAYCGRERTVASL 765
            G  +N   D  G T+LH AA   R      L
Sbjct: 11  QGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 5e-07
 Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 701 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER 760
           EGG  P   DH     +H AAA G    +        + N +D  G T LH A    R  
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE 183

Query: 761 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE 806
               L++ GA          +    +TP  +A   G   I   + E
Sbjct: 184 EAKLLVSQGA------SIYIENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 736 GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTP 788
           G  +N  + NG T LH+AA   R      L+  GA      +P  K     T 
Sbjct: 93  GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA------NPDAKDHYEATA 139

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 7e-07
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 739 INFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGH 797
             +   +G TALH A     E  +  L+   A    L     +   G+T   LA+ +G 
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL---QNDLGQTALHLAAILGE 57

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 11/37 (29%), Positives = 12/37 (32%)

Query: 735 AGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAA 771
           AG +   R   G T L  A           L A GA 
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 713 GQGVLHFAAALGYDWALEPTTVAGVN---INFRDVNGWTALHWAAYCGRE 759
           G   LH A    ++  L+           ++ ++  G TALH AA  G  
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA 58

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 30/262 (11%), Positives = 61/262 (23%), Gaps = 33/262 (12%)

Query: 544 WSCMFGEIEVPAEIVAGGVLRCHTSSQ-KVGRVPFYVTCSNRLSCSEVREFEYRASHIPD 602
            + +         ++       +   Q  +G+   ++      + +  + +   A  +  
Sbjct: 15  LAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA 74

Query: 603 VDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWD 662
                    +           +L              L          S     ++ D  
Sbjct: 75  ERGGHTALHLACRVRAHTCACVL--------------LQPRPSHPRDASDTYLTQSQDCT 120

Query: 663 LMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAA 722
                      S    + +   +    +LQ+    +  +G     V              
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE--AENYDGHTPLHVAVIHKD-------- 170

Query: 723 LGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKY 782
              +                   G T LH A        +  L+  GA      DPT + 
Sbjct: 171 --AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA------DPTARM 222

Query: 783 PSGRTPADLASSIGHKGIAGYL 804
             GRTP   A    +  +A  L
Sbjct: 223 YGGRTPLGSALLRPNPILARLL 244

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 706 PCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASL 765
             V    G+  L  A        ++     G N+N +  +G +ALH A+  G    V +L
Sbjct: 137 DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 196

Query: 766 IALGAAPGALSDPTPKYPSGRTPADLASSIGHKGI 800
           +  GA      D + K     TP  +A S     I
Sbjct: 197 VRSGA------DSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 12/69 (17%), Positives = 24/69 (34%)

Query: 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWA 753
            +VQ   + G       + G   LH A+  G    +     +G + + ++ +  T L  A
Sbjct: 158 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 217

Query: 754 AYCGRERTV 762
                   +
Sbjct: 218 RSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 6e-05
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 745 NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLA 792
           +G T LH A   G    V  L+ L    G   +        +TP  LA
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGR--ELDIYNNLRQTPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 4/48 (8%)

Query: 713 GQGVLHFAAALGYDWA----LEPTTVAGVNINFRDVNGWTALHWAAYC 756
           G   LH A   G   A    +      G  ++  +    T LH A   
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 12/63 (19%), Positives = 20/63 (31%)

Query: 703 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTV 762
           G      D      LH+A    +   +E     G +++ +     TA   +   G E   
Sbjct: 90  GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA 149

Query: 763 ASL 765
             L
Sbjct: 150 EIL 152

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 5e-05
 Identities = 12/77 (15%), Positives = 20/77 (25%)

Query: 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWA 753
            +    + G          G+  LH A  L     +      G ++N     G++     
Sbjct: 126 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 185

Query: 754 AYCGRERTVASLIALGA 770
                 R    L  L  
Sbjct: 186 WGRPSTRIQQQLGQLTL 202

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 7/101 (6%)

Query: 707 CVLDHCGQGVLHFAAALGYDWALEPTTVAGVNI-NFRDVNGWTALHWAAYCGRERTVASL 765
              ++ G   LH A+  GY   +E     G ++      NG TALH A        V+ L
Sbjct: 105 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 164

Query: 766 IALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE 806
           +  GA      D       G +P  L        I   L +
Sbjct: 165 LKCGA------DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 199

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)

Query: 745 NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTP 788
           +G + LH A     +     +I       A      +    +TP
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLA--FLNFQNNLQQTP 42

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.004
 Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 4/48 (8%)

Query: 713 GQGVLHFAAALGYDWA----LEPTTVAGVNINFRDVNGWTALHWAAYC 756
           G   LH A            +         +NF++    T LH A   
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT 49

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 8e-05
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 703 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTV 762
           G    V D  G   +H A   G+         A  +++ RD  G T L  A   G +  V
Sbjct: 91  GADVNVPDGTGALPIHLAVQEGHTAV-VSFLAAESDLHRRDARGLTPLELALQRGAQDLV 149

Query: 763 ASLI 766
             L 
Sbjct: 150 DILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 736 GVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSI 795
           G ++N  D  G   +H A   G    V+ L A         D   +   G TP +LA   
Sbjct: 91  GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-------DLHRRDARGLTPLELALQR 143

Query: 796 GHKGIAGYL 804
           G + +   L
Sbjct: 144 GAQDLVDIL 152

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 1/44 (2%)

Query: 717 LHFAAALG-YDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRE 759
           LH A     +    E        +  +D +G   LHW+      
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 10/50 (20%), Positives = 13/50 (26%), Gaps = 5/50 (10%)

Query: 748 TALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGH 797
             LH A        V  L+    +         K   GR P   + S   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPS-----LLLQKDQDGRIPLHWSVSFQA 46

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 12/82 (14%), Positives = 23/82 (28%)

Query: 689 EKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWT 748
           ++  + +V    +           G   LH+         L+       +I   + +G T
Sbjct: 57  DRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGET 116

Query: 749 ALHWAAYCGRERTVASLIALGA 770
            L  A     E     L    +
Sbjct: 117 PLDIAKRLKHEHCEELLTQALS 138

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 738 NINFRDVNGWTALHWAAYCGRERTVASLIALG 769
           N+  R+  G TA   A   GR   V+ + A G
Sbjct: 125 NVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1092
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.98
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.93
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.91
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.91
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.9
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.89
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.89
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.88
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.87
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.87
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.87
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.86
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.84
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.84
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.83
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.82
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.82
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.8
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.77
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.76
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.76
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.75
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.74
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.72
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.7
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	97.67
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	97.67
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	96.81
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	96.75
d2cxka1	82	Calmodulin binding transcription activator 1 {Huma	96.37
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	89.61
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	85.18

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=3.6e-32  Score=288.20  Aligned_cols=238  Identities=14%  Similarity=0.018  Sum_probs=176.4

Q ss_pred             CcccChHHHHHHHcCCcHHHHHHHHCCCCCC-CCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcH
Q 001365          535 SQQEAENCKWSCMFGEIEVPAEIVAGGVLRC-HTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDIT  613 (1092)
Q Consensus       535 ~~~~~TpLH~A~~fG~veVv~~LL~~Gadin-~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~Tp  613 (1092)
                      +..|.||||+||..|+.+++++||+.|++.+ ....+..|+||||+||.+|+    ...+++|++.|++++.+|..|.||
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~----~~iv~~Ll~~ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE----ASTVEKLYAAGAGVLVAERGGHTA   81 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTC----HHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcc----cccccccccccccccccccccchh
Confidence            4568999999999999999999999998855 33567889999999999986    445578999999999999999999


Q ss_pred             Hhh----hHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHh
Q 001365          614 SEN----LRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKE  689 (1092)
Q Consensus       614 L~~----~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~  689 (1092)
                      ||.    ++.+++++|+.............      .......     ......+....                .....
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~----------------~~~~~  134 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDT------YLTQSQD-----CTPDTSHAPAA----------------VDSQP  134 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------------------------
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchh------hhhHHhh-----hcccchHHHHH----------------HHhhc
Confidence            985    66778877765332222111000      0000000     00000000000                00000


Q ss_pred             hhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCcccc-CCCCccHHHHHHHcCCHHHHHHHHHc
Q 001365          690 KLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFR-DVNGWTALHWAAYCGRERTVASLIAL  768 (1092)
Q Consensus       690 ~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~-D~~G~TpLH~Aa~~G~~eiV~~LLe~  768 (1092)
                      .........+...+.+++.+|..|.||||+||..|+.++|++|+++|++++.. +..|.||||+||..|+.++|++|+++
T Consensus       135 ~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~  214 (255)
T d1oy3d_         135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA  214 (255)
T ss_dssp             ---------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             chhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHC
Confidence            01111333344567788999999999999999999999999999999998865 67899999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          769 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       769 GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                      |++++.      +|..|.||||+|+.+|+.+++++|+++|+
T Consensus       215 gadin~------~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         215 GADPTA------RMYGGRTPLGSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             TCCTTC------CCTTSCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             CCCCCC------CCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            999887      78999999999999999999999999994

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.8e-30  Score=289.45  Aligned_cols=274  Identities=14%  Similarity=0.109  Sum_probs=200.4

Q ss_pred             ChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh--
Q 001365          539 AENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN--  616 (1092)
Q Consensus       539 ~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~--  616 (1092)
                      +||||+||.+|+.++|+.||+.|+++|  ..|..|.||||+||.+|+    ...+++|+++|++++.++..|.|||++  
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in--~~d~~g~TpL~~A~~~g~----~~iv~~Ll~~gadi~~~~~~g~t~L~~A~   74 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPN--VSNVKVETPLHMAARAGH----TEVAKYLLQNKAKVNAKAKDDQTPLHCAA   74 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSC--CSSSCCCCHHHHHHHHTC----HHHHHHHHHHTCCSSCCCTTSCCHHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCC----HHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence            699999999999999999999999987  566779999999999986    445578999999999999999999984  


Q ss_pred             --hHHHHHHHHhc-CCCCCCCCCC--------------------------------CCchhh--------HHHHHHHhh-
Q 001365          617 --LRMQFGKLLCL-TSVSTPNYDP--------------------------------SNLSDI--------SQLNSKISS-  652 (1092)
Q Consensus       617 --~~~~lvkLLl~-gadv~~~~~~--------------------------------~~~~~~--------~~ll~~I~~-  652 (1092)
                        ++.+++++|+. ..+.......                                .+....        ..++..+.. 
T Consensus        75 ~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~  154 (408)
T d1n11a_          75 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER  154 (408)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHc
Confidence              55566666543 2222111110                                000000        001111110 


Q ss_pred             ---hhccCCCcchHHHHhhhhcCCChHH-----------------------------------------------HHHHH
Q 001365          653 ---LLKDENDDWDLMLKLTAEEKFSSEE-----------------------------------------------VKEKL  682 (1092)
Q Consensus       653 ---Ll~~d~~g~t~L~~a~~~~~~s~~~-----------------------------------------------~~~~l  682 (1092)
                         ....+..+.++|+.|+..+......                                               .....
T Consensus       155 ~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~  234 (408)
T d1n11a_         155 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP  234 (408)
T ss_dssp             TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCH
Confidence               1111334555665554433221100                                               00011


Q ss_pred             HHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHH
Q 001365          683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTV  762 (1092)
Q Consensus       683 L~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV  762 (1092)
                      ++.++...... +++.++..+..++..|..|.||||.|+..++.+++++|+++|++++..+..+.||||.|+..++.+++
T Consensus       235 l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~  313 (408)
T d1n11a_         235 LHLAAQEGHAE-MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV  313 (408)
T ss_dssp             HHHHHHTTCHH-HHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred             HHHHHHhCcHh-HhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceee
Confidence            33333333333 56777888888888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          763 ASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       763 ~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      +.|++.|+++|.      +|..|+||||+|+.+|+.++|++|+++|     ++++++|++|.||...|
T Consensus       314 ~~ll~~g~~in~------~d~~G~T~Lh~A~~~g~~~iv~~Ll~~G-----Ad~n~~d~~G~t~L~~A  370 (408)
T d1n11a_         314 KFLLQHQADVNA------KTKLGYSPLHQAAQQGHTDIVTLLLKNG-----ASPNEVSSDGTTPLAIA  370 (408)
T ss_dssp             HHHHHTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCSCCCCSSSCCHHHHH
T ss_pred             eeeccccccccc------cCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHH
Confidence            999999998887      7899999999999999999999999999     78999999997764333

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.4e-29  Score=279.34  Aligned_cols=273  Identities=15%  Similarity=0.087  Sum_probs=206.8

Q ss_pred             CCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchh------------------------
Q 001365          534 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSE------------------------  589 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~se------------------------  589 (1092)
                      .+..+.||||+||..|+.+++++||++|++++  ..+..|.||||+|+.+|.  .+                        
T Consensus        29 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~--~~~~~g~t~L~~A~~~g~--~~~~~~Ll~~~~~~~~~~~~~~~~~~  104 (408)
T d1n11a_          29 SNVKVETPLHMAARAGHTEVAKYLLQNKAKVN--AKAKDDQTPLHCAARIGH--TNMVKLLLENNANPNLATTAGHTPLH  104 (408)
T ss_dssp             SSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTSCCHHHHHHHHTC--HHHHHHHHHHTCCTTCCCTTCCCHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC--CCCCCCCCHHHHHHHcCC--HHHHHHHHHhhhccccccccccchhh
Confidence            45568899999999999999999999999977  566779999999998874  22                        


Q ss_pred             ----------------------------------------HHHHHHHHhCCCCcccccCCCCcHHhh----hHHHHHHHH
Q 001365          590 ----------------------------------------VREFEYRASHIPDVDVADNCGDITSEN----LRMQFGKLL  625 (1092)
Q Consensus       590 ----------------------------------------Vv~fe~Ll~~Gadvna~D~~G~TpL~~----~~~~lvkLL  625 (1092)
                                                              ...+++|++.|++++..+..|.+||++    ++.+++++|
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~L  184 (408)
T d1n11a_         105 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL  184 (408)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHH
Confidence                                                    234567888999999999999999985    566777776


Q ss_pred             h-cCCCCCCCCCCCCchhhHHHH------------HHHhhhhccCCCcchHHHHhhhhcCCChHH--------------H
Q 001365          626 C-LTSVSTPNYDPSNLSDISQLN------------SKISSLLKDENDDWDLMLKLTAEEKFSSEE--------------V  678 (1092)
Q Consensus       626 l-~gadv~~~~~~~~~~~~~~ll------------~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~--------------~  678 (1092)
                      + .|++++.... .+........            .........+..+.++|+.++..+......              .
T Consensus       185 l~~g~~~~~~~~-~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  263 (408)
T d1n11a_         185 LPRGGSPHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS  263 (408)
T ss_dssp             GGGTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             HhcCCcccccCC-CCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCC
Confidence            4 4676655433 2222211111            111111223566788998877654432110              0


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCC
Q 001365          679 KEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR  758 (1092)
Q Consensus       679 ~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~  758 (1092)
                      ....++.++.....+ ++++|+++|++++..+..+.||||.|+..++.++++.|++.|+++|.+|.+|.||||+||..|+
T Consensus       264 g~~~l~~a~~~~~~~-i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~  342 (408)
T d1n11a_         264 GLTPLHLVAQEGHVP-VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH  342 (408)
T ss_dssp             CCCHHHHHHHHTCHH-HHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCChhhhhhhcCcHH-HHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCC
Confidence            112355555555443 7889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccC
Q 001365          759 ERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNK  820 (1092)
Q Consensus       759 ~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD  820 (1092)
                      .++|++||++||++|+      +|.+|+||||+|+.+||.++|++|....  .+..+..+.|
T Consensus       343 ~~iv~~Ll~~GAd~n~------~d~~G~t~L~~A~~~~~~~iv~~L~~~~--~~~~~~~~~~  396 (408)
T d1n11a_         343 TDIVTLLLKNGASPNE------VSSDGTTPLAIAKRLGYISVTDVLKVVT--DETSFVLVSD  396 (408)
T ss_dssp             HHHHHHHHHTTCCSCC------CCSSSCCHHHHHHHTTCHHHHHHHHHHC--CCCSSCC---
T ss_pred             HHHHHHHHHCCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHHH--hccccccccc
Confidence            9999999999999987      7899999999999999999999885432  2334444444

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-29  Score=264.28  Aligned_cols=212  Identities=20%  Similarity=0.146  Sum_probs=183.8

Q ss_pred             hHHHHHHHcCCcHHHHHHH-HCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh--
Q 001365          540 ENCKWSCMFGEIEVPAEIV-AGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN--  616 (1092)
Q Consensus       540 TpLH~A~~fG~veVv~~LL-~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~--  616 (1092)
                      +.||.+|..|+++.++.+| ..+.+++  ..|..|+||||+||.+|+  .  ..+++++..+......+..+.++++.  
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~~~~~~~--~~D~~G~TpLh~Aa~~g~--~--e~~~~l~~~~~~~~~~~~~~~~~~~~~~   78 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILADKSLAT--RTDQDSRTALHWACSAGH--T--EIVEFLLQLGVPVNDKDDAGWSPLHIAA   78 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHHCGGGGG--CCCTTSCCHHHHHHHHTC--H--HHHHHHHHHTCCSCCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHhCCCcCc--CcCCCCCCHHHHHHHhhh--h--cccccccccccccccccccccccccccc
Confidence            5889999999999887775 4556655  678889999999999986  4  44568899999988888889888874  


Q ss_pred             --hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHH
Q 001365          617 --LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQV  693 (1092)
Q Consensus       617 --~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~  693 (1092)
                        ++.+++++|+. +++++..                      +..|+||||.|+..+...                   
T Consensus        79 ~~~~~~i~~~Ll~~~~d~~~~----------------------d~~g~tpL~~A~~~~~~e-------------------  117 (223)
T d1uoha_          79 SAGRDEIVKALLGKGAQVNAV----------------------NQNGCTPLHYAASKNRHE-------------------  117 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCC----------------------CTTCCCHHHHHHHHTCHH-------------------
T ss_pred             cccccchhHHHhccCceeEee----------------------CCCCCchhhHHHHcCCHH-------------------
Confidence              66788887754 5555433                      358899999988766532                   


Q ss_pred             HHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCC
Q 001365          694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPG  773 (1092)
Q Consensus       694 ~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin  773 (1092)
                       ++++|+++|++++.+|..|.||||+|+..|+.+++++|+..|++++.+|..|+||||+||..|+.++|++||++||+++
T Consensus       118 -~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~  196 (223)
T d1uoha_         118 -IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY  196 (223)
T ss_dssp             -HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             -HHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCC
Confidence             7888999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 001365          774 ALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE  806 (1092)
Q Consensus       774 ~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe  806 (1092)
                      .      +|..|+||||+| ..|+.+|+++|++
T Consensus       197 ~------~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         197 I------ENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             C------CCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             C------CCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            7      889999999998 4799999999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.1e-29  Score=261.17  Aligned_cols=216  Identities=21%  Similarity=0.213  Sum_probs=177.4

Q ss_pred             hHHHHHHHcCCcHHHHHHHHC-CCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccc---cCCCCcHHh
Q 001365          540 ENCKWSCMFGEIEVPAEIVAG-GVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVA---DNCGDITSE  615 (1092)
Q Consensus       540 TpLH~A~~fG~veVv~~LL~~-Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~---D~~G~TpL~  615 (1092)
                      +|||+||..|++++++.||.. +.+++  .++..|+||||+||..|.    ...+++|++.|++++..   +..|.+|++
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~--~~d~~G~TpL~~A~~~g~----~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~   75 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLL--QKDQDGRIPLHWSVSFQA----HEITSFLLSKMENVNLDDYPDDSGWTPFH   75 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTT--CCCTTSCCHHHHHHHTTC----HHHHHHHHTTCTTCCGGGCCCTTSCCHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCccc--ccCCCCCCHHHHHHHcCC----ccccchhhhhhcccccccccccccccccc
Confidence            699999999999999999875 46655  667889999999999986    44557899999998754   677899998


Q ss_pred             h----hHHHHHHHHh-cCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhh
Q 001365          616 N----LRMQFGKLLC-LTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEK  690 (1092)
Q Consensus       616 ~----~~~~lvkLLl-~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~  690 (1092)
                      .    ...++++.+. .+......                    ..+..+.++++.++..+...                
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~----------------  119 (229)
T d1ixva_          76 IACSVGNLEVVKSLYDRPLKPDLN--------------------KITNQGVTCLHLAVGKKWFE----------------  119 (229)
T ss_dssp             HHHHHTCHHHHHHHHSSSSCCCTT--------------------CCCTTSCCHHHHHHHTTCHH----------------
T ss_pred             cccccccccccccccccccccccc--------------------ccccccccccccccccchhh----------------
Confidence            5    4445555543 34333221                    12256778888776654432                


Q ss_pred             hHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCC-CCccccCCCCccHHHHHHHcCCHHHHHHHHH-c
Q 001365          691 LQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAG-VNINFRDVNGWTALHWAAYCGRERTVASLIA-L  768 (1092)
Q Consensus       691 l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~G-adin~~D~~G~TpLH~Aa~~G~~eiV~~LLe-~  768 (1092)
                          +++.|++.|.+++..|..|+||||+|+..|+.+++++|++.| .++|.+|.+|+||||+||..|+.++|++||+ .
T Consensus       120 ----~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~  195 (229)
T d1ixva_         120 ----VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY  195 (229)
T ss_dssp             ----HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----hhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhc
Confidence                677889999999999999999999999999999999999987 7899999999999999999999999999997 5


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Q 001365          769 GAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLS  810 (1092)
Q Consensus       769 GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~  810 (1092)
                      |+++++      +|..|+||||+|+   +.+++++|+++|++
T Consensus       196 gad~~~------~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         196 GAEYDL------VDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             CCCSCC------CCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             CCCCCC------cCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            999888      7899999999998   45899999999953

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=1.1e-28  Score=263.20  Aligned_cols=232  Identities=16%  Similarity=0.146  Sum_probs=170.9

Q ss_pred             ccChHHHHHHHcCCcHHHHHH--------HHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccC
Q 001365          537 QEAENCKWSCMFGEIEVPAEI--------VAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADN  608 (1092)
Q Consensus       537 ~~~TpLH~A~~fG~veVv~~L--------L~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~  608 (1092)
                      .+.||||+||..|+.+++++|        ++.|+++|  ..|..|+||||+||.+|+    ...+++|++.|++++.+|.
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn--~~d~~G~TpLh~A~~~g~----~~iv~~Ll~~Gad~n~~~~  105 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN--AMDCDENTPLMLAVLARR----RRLVAYLMKAGADPTIYNK  105 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT--CCCTTSCCHHHHHHHHTC----HHHHHHHHHTTCCSCCCCT
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcc--ccCCCCCeeecccccccc----ccccccccccccccccccc
Confidence            478999999999999999776        67899988  667789999999999986    4445789999999999999


Q ss_pred             CCCcHHhh----hHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHH
Q 001365          609 CGDITSEN----LRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQ  684 (1092)
Q Consensus       609 ~G~TpL~~----~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~  684 (1092)
                      .|.||++.    ++..++.++......                  ...+...+....++...+...........    +.
T Consensus       106 ~g~t~l~~a~~~~~~~~~~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  163 (277)
T d2fo1e1         106 SERSALHQAAANRDFGMMVYMLNSTKL------------------KGDIEELDRNGMTALMIVAHNEGRDQVAS----AK  163 (277)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHTTSHHH------------------HHTTSCCCTTSCCHHHHHHHSCSTTHHHH----HH
T ss_pred             cccccccchhhhcchhhhhhhhhcccc------------------cccccccccccchhHHHHHhccccccccc----cc
Confidence            99999985    444555555321100                  00001112344455555444333221100    00


Q ss_pred             HHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHH-HCCCCccccCCCCccHHHHHHHcCCHHHHH
Q 001365          685 KLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTT-VAGVNINFRDVNGWTALHWAAYCGRERTVA  763 (1092)
Q Consensus       685 ~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL-~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~  763 (1092)
                      .....     ............+..+..|+||||+++..|+.+++++++ ..|.+++.+|..|+||||+||..|+.++|+
T Consensus       164 ~~~~~-----~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~  238 (277)
T d2fo1e1         164 LLVEK-----GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM  238 (277)
T ss_dssp             HHHHH-----TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             ccccc-----cccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            00000     000001112334567789999999999999999998755 679999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 001365          764 SLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAES  807 (1092)
Q Consensus       764 ~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~  807 (1092)
                      +||++|+++|+      +|..|+||||+|+.+|+.+||++|+++
T Consensus       239 ~Ll~~gadin~------~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         239 YLIQQGASVEA------VDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHHTTCCSSC------CCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHCcCCCCC------cCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            99999999887      789999999999999999999999863

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3e-27  Score=252.94  Aligned_cols=247  Identities=13%  Similarity=0.052  Sum_probs=181.6

Q ss_pred             cChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh-
Q 001365          538 EAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN-  616 (1092)
Q Consensus       538 ~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~-  616 (1092)
                      +.|+||+||..|++++|++||++|+++|. ..+..|+||||+||.+|+  .  ..+++|+..+...+..+..+.+|.+. 
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~-~~~~~g~tpL~~A~~~~~--~--eiv~~L~~~~~~~~~~~~~~~~~~~~~   79 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSR--E--DIVELLLRHGADPVLRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTTCCCHHHHHHHTTC--H--HHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCc-cCCCCCCCHHHHHHHcCC--H--HHhhhhccccccccccccccchhhHHH
Confidence            46899999999999999999999999874 334579999999999986  4  44578999999999998888888875 


Q ss_pred             ---hHHHHHHHHhc-CCCCCCCCCCCCchhhHHH--------HHHHhhh--------------hccCCCcchHHHHhhhh
Q 001365          617 ---LRMQFGKLLCL-TSVSTPNYDPSNLSDISQL--------NSKISSL--------------LKDENDDWDLMLKLTAE  670 (1092)
Q Consensus       617 ---~~~~lvkLLl~-gadv~~~~~~~~~~~~~~l--------l~~I~~L--------------l~~d~~g~t~L~~a~~~  670 (1092)
                         +.......+.. ..+...... .+.......        ...+...              ......|.+|||.|+. 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~-  157 (285)
T d1wdya_          80 AIAGSVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE-  157 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH-
T ss_pred             hhcCCccccchhhhhccccccccc-CCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHH-
Confidence               33333333332 222221111 111111100        0000000              0011234444444443 


Q ss_pred             cCCChHHHHHHHHHHHHHhhhHHHHHHHHH-hCCCCCCcccCCCCcHHHHHHHcC----CHhHHHHHHHCCCCccccCCC
Q 001365          671 EKFSSEEVKEKLVQKLLKEKLQVWLVQKAA-EGGKGPCVLDHCGQGVLHFAAALG----YDWALEPTTVAGVNINFRDVN  745 (1092)
Q Consensus       671 ~~~s~~~~~~~lL~~a~k~~l~~~LvklLl-e~GadvN~~D~~G~TpLH~AA~~G----~~~iVk~LL~~Gadin~~D~~  745 (1092)
                                        .+..+ +++.|+ ..|++++..+..|.++++.+...+    ...+++.|+++|++++.+|..
T Consensus       158 ------------------~~~~~-~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~  218 (285)
T d1wdya_         158 ------------------KGHVE-VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER  218 (285)
T ss_dssp             ------------------HTCHH-HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTT
T ss_pred             ------------------cCCHH-HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCC
Confidence                              33333 566666 468999999999999988776544    457899999999999999999


Q ss_pred             CccHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCC
Q 001365          746 GWTALHWAAYCGRERTVASLIAL-GAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKK  821 (1092)
Q Consensus       746 G~TpLH~Aa~~G~~eiV~~LLe~-GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~  821 (1092)
                      |.||||+||..|+.++|++||+. |+++|.      +|.+|.||||+|+..|+.++|++|+++|     |++|++|.
T Consensus       219 g~t~L~~a~~~~~~~~v~~lL~~~g~din~------~d~~G~TpL~~A~~~~~~eiv~~Ll~~G-----Ad~n~~d~  284 (285)
T d1wdya_         219 GKTPLILAVEKKHLGLVQRLLEQEHIEIND------TDSDGKTALLLAVELKLKKIAELLCKRG-----ASTDCGDL  284 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHSSSCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHHS-----SCSCCSSC
T ss_pred             CCCccchhhhcCcHHHHHHHHHcCCCCCcC------CCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCcccC
Confidence            99999999999999999999985 888887      7899999999999999999999999999     77888873

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=5.1e-28  Score=261.02  Aligned_cols=228  Identities=21%  Similarity=0.210  Sum_probs=174.4

Q ss_pred             cChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh-
Q 001365          538 EAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN-  616 (1092)
Q Consensus       538 ~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~-  616 (1092)
                      +.|+|++||..|++++|++||+.|+++|  ..|..|.||||+|+.+|+    +..+++|++.|++.+..+..+.+||+. 
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadvn--~~d~~G~T~L~~A~~~g~----~eiv~~Ll~~~~~~~~~~~~~~~~L~~a  113 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADIN--YANVDGLTALHQACIDDN----VDMVKFLVENGANINQPDNEGWIPLHAA  113 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTT--CBCTTCCBHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCcHHHHHHhcCC----ceeeeeeccccccccccccccccccccc
Confidence            4589999999999999999999999987  566779999999999986    444578999999999999999999985 


Q ss_pred             ---hHHHHHHHHh-cCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcC------------CChHHHHH
Q 001365          617 ---LRMQFGKLLC-LTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEK------------FSSEEVKE  680 (1092)
Q Consensus       617 ---~~~~lvkLLl-~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~------------~s~~~~~~  680 (1092)
                         ++.++++.|. .+......+                      ..++++++.+...+.            ........
T Consensus       114 ~~~~~~~~~~~l~~~~~~~~~~~----------------------~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~  171 (291)
T d1s70b_         114 ASCGYLDIAEYLISQGAHVGAVN----------------------SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK  171 (291)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCC----------------------TTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             ccccccchhhcccccCccccccc----------------------ccCccccccccccccchhccccccccccccccccc
Confidence               5667777665 454443322                      233333333322111            11100000


Q ss_pred             HHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHH
Q 001365          681 KLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRER  760 (1092)
Q Consensus       681 ~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~e  760 (1092)
                           .............+.....+....+..|.||||+|+..|+.++++.|+++|+++|.+|..|+||||+||..|+.+
T Consensus       172 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~  246 (291)
T d1s70b_         172 -----EEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE  246 (291)
T ss_dssp             -----HHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             -----cccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHH
Confidence                 000011122444555666777778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          761 TVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       761 iV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      +|++||++|||+++      +|..|+||||+|+.    +++++|.+..
T Consensus       247 iv~lLl~~Gadv~~------~d~~G~TaL~~A~e----~~~~~L~~~~  284 (291)
T d1s70b_         247 ACRILVENLCDMEA------VNKVGQTAFDVADE----DILGYLEELQ  284 (291)
T ss_dssp             HHHHHHHTTCCTTC------CCTTSCCTTTSCCS----GGGHHHHHHH
T ss_pred             HHHHHHHCCCCCCC------cCCCCCCHHHHHHH----HHHHHHHHHh
Confidence            99999999999988      78999999999975    5777777643

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6e-27  Score=237.04  Aligned_cols=216  Identities=18%  Similarity=0.088  Sum_probs=166.9

Q ss_pred             ccChHHHHHHHcCCcHHHHHHH----HCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCc
Q 001365          537 QEAENCKWSCMFGEIEVPAEIV----AGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDI  612 (1092)
Q Consensus       537 ~~~TpLH~A~~fG~veVv~~LL----~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~T  612 (1092)
                      .|.||||+||..|+.++++.||    +.|++++  ..|..|+||||+||.+|+    ...+++|++.|++++..+..|.+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in--~~d~~g~TpL~~A~~~~~----~~iv~~Ll~~ga~~~~~~~~~~~   75 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD--IYNNLRQTPLHLAVITTL----PSVVRLLVTAGASPMALDRHGQT   75 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--ccCCCCCccceehhcccc----ccccccccccccccccccccccc
Confidence            4789999999999999999887    4899877  667789999999999986    44457899999999999999999


Q ss_pred             HHhh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHH
Q 001365          613 TSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLL  687 (1092)
Q Consensus       613 pL~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~  687 (1092)
                      +++.    ....+++.+.. .........                  ........+|+........              
T Consensus        76 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~~~~~~~~--------------  123 (228)
T d1k1aa_          76 AAHLACEHRSPTCLRALLDSAAPGTLDLE------------------ARNYDGLTALHVAVNTECQ--------------  123 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTT------------------CCCTTSCCHHHHHHHHTCH--------------
T ss_pred             ccccccccccccchhhhhhcccccccccc------------------ccccccccccccccccccc--------------
Confidence            8884    33344433322 111111000                  0012334555544432221              


Q ss_pred             HhhhHHHHHHHHHhCCCC-CCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHH
Q 001365          688 KEKLQVWLVQKAAEGGKG-PCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLI  766 (1092)
Q Consensus       688 k~~l~~~LvklLle~Gad-vN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LL  766 (1092)
                            .....|.....+ ....+..|.+|||.|+..+...+++.+++.|.+++.+|..|.||||+||..|+.++|++||
T Consensus       124 ------~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll  197 (228)
T d1k1aa_         124 ------ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV  197 (228)
T ss_dssp             ------HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH
T ss_pred             ------hhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHH
Confidence                  133445555555 3445678999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHH
Q 001365          767 ALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAG  802 (1092)
Q Consensus       767 e~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~  802 (1092)
                      ++|||+|+      +|.+|+||||+|+.+|+.+||+
T Consensus       198 ~~Gad~n~------~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         198 RSGADSSL------KNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HTTCCTTC------CCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HCCCCCCC------CCCCCCCHHHHHHhCCCccccC
Confidence            99999887      7899999999999999999885

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=5e-27  Score=240.93  Aligned_cols=202  Identities=19%  Similarity=0.130  Sum_probs=160.7

Q ss_pred             cHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh----hHHHHHHHHh
Q 001365          551 IEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN----LRMQFGKLLC  626 (1092)
Q Consensus       551 veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~----~~~~lvkLLl  626 (1092)
                      .|||++||++|++++. ..|..|.||||+||.+|+    ...+++|+..|+++|.++..+.++++.    .......+..
T Consensus         2 ~~~v~~Ll~~g~din~-~~d~~G~t~L~~A~~~g~----~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1ot8a_           2 AQVISDLLAQGAELNA-TMDKTGETSLHLAARFAR----ADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILL   76 (209)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCCcCc-CcCCCCCCHHHHHHHcCC----HHHHHHHHhhccccccccccccccccccccccccccccccc
Confidence            4899999999999762 135679999999999986    444578999999999999999999884    2222222222


Q ss_pred             c-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCC
Q 001365          627 L-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKG  705 (1092)
Q Consensus       627 ~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~Gad  705 (1092)
                      . ........                     ...+.+..+.+.......                    +.+.|...+++
T Consensus        77 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~--------------------~~~~L~~~~~~  115 (209)
T d1ot8a_          77 RNRATNLNAR---------------------MHDGTTPLILAARLAIEG--------------------MVEDLITADAD  115 (209)
T ss_dssp             TCTTCCTTCC---------------------CTTCCCHHHHHHHTTCTT--------------------HHHHHHHTTCC
T ss_pred             cccccccccc---------------------cccccccccccccccchh--------------------hhhhhhhhccc
Confidence            2 11111111                     123344444433322221                    45667889999


Q ss_pred             CCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 001365          706 PCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSG  785 (1092)
Q Consensus       706 vN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G  785 (1092)
                      ++..+..|.||||+|+..|...+++.|+..+++++.+|..|.||||+||..|+.++|++||++||+++.      +|..|
T Consensus       116 ~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~------~d~~g  189 (209)
T d1ot8a_         116 INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREI------TDHMD  189 (209)
T ss_dssp             TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------CCTTS
T ss_pred             ccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCCCC------cCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999887      78999


Q ss_pred             CCHHHHHHHcCcHHHHHHH
Q 001365          786 RTPADLASSIGHKGIAGYL  804 (1092)
Q Consensus       786 ~TPLhlAa~~G~~eiv~~L  804 (1092)
                      +||||+|+.+|+.+||++|
T Consensus       190 ~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         190 RLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999986

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.8e-26  Score=240.61  Aligned_cols=206  Identities=16%  Similarity=0.131  Sum_probs=173.0

Q ss_pred             CchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh----hHHHHHHHHhcCCCCCCCCCCCCchhhHHHHH
Q 001365          573 GRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN----LRMQFGKLLCLTSVSTPNYDPSNLSDISQLNS  648 (1092)
Q Consensus       573 G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~----~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~  648 (1092)
                      +.+.||.+|..|+ ...+.  ++|...+..++.+|..|+||||+    ++.+++++|..........             
T Consensus         3 ~~~~~~~~a~~G~-~~~v~--~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~-------------   66 (223)
T d1uoha_           3 SNLMVCNLAYSGK-LEELK--ESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-------------   66 (223)
T ss_dssp             SSSHHHHHHHTTC-HHHHH--HHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCC-------------
T ss_pred             CHHHHHHHHHhCC-HHHHH--HHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccc-------------
Confidence            4588999999986 22222  46778888999999999999995    7888998886532222211             


Q ss_pred             HHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhH
Q 001365          649 KISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWA  728 (1092)
Q Consensus       649 ~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~i  728 (1092)
                              ...++++++.++..+...                    ++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus        67 --------~~~~~~~~~~~~~~~~~~--------------------i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~  118 (223)
T d1uoha_          67 --------DDAGWSPLHIAASAGRDE--------------------IVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI  118 (223)
T ss_dssp             --------CTTCCCHHHHHHHHTCHH--------------------HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             --------cccccccccccccccccc--------------------hhHHHhccCceeEeeCCCCCchhhHHHHcCCHHH
Confidence                    145667777766544432                    7788999999999999999999999999999999


Q ss_pred             HHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          729 LEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       729 Vk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      +++|+++|++++.+|..|.||||+|+..|+.+++++|++.|++++.      +|..|+||||+|+..|+.++|++|+++|
T Consensus       119 ~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~------~d~~g~TpL~~Aa~~g~~~~v~~LL~~G  192 (223)
T d1uoha_         119 AVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI------QDTEGNTPLHLACDEERVEEAKLLVSQG  192 (223)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC------CCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeee------ccCCCCceeccccccCcHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999999999887      7799999999999999999999999999


Q ss_pred             CCCCcccCcccCCCCCcHHHHhhhh
Q 001365          809 LSSALSAISLNKKDGDVAEVTGATA  833 (1092)
Q Consensus       809 a~~h~adlnlkD~~G~ta~iaa~~~  833 (1092)
                           ++++++|..|.||...|...
T Consensus       193 -----ad~~~~d~~g~tpl~~A~~~  212 (223)
T d1uoha_         193 -----ASIYIENKEEKTPLQVAKGG  212 (223)
T ss_dssp             -----CCSCCCCTTSCCHHHHCCTT
T ss_pred             -----CCCCCCCCCCCCHHHHHHCC
Confidence                 78999999997775444333

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4e-26  Score=238.22  Aligned_cols=186  Identities=18%  Similarity=0.128  Sum_probs=150.5

Q ss_pred             cChHHHHHHHcCCcHH----HHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcH
Q 001365          538 EAENCKWSCMFGEIEV----PAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDIT  613 (1092)
Q Consensus       538 ~~TpLH~A~~fG~veV----v~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~Tp  613 (1092)
                      |.||||+|+..|+.++    ++.++..|+++|  ..|..|+||||+||.+|+  .  ..+++|++.|++++..|..|.||
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in--~~d~~g~TpLh~A~~~~~--~--~iv~~L~~~g~d~~~~d~~g~t~   75 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN--FQNNLQQTPLHLAVITNQ--P--EIAEALLGAGCDPELRDFRGNTP   75 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCC--CCCTTCCCHHHHHHHTTC--H--HHHHCCCSCCCCSCCCCTTCCCH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcc--cCCCCCCccccccccccc--c--ccccccccccccccccccccccc
Confidence            6799999999999744    555667898877  667789999999999985  4  44578999999999999999999


Q ss_pred             Hhhh----HHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHh
Q 001365          614 SENL----RMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKE  689 (1092)
Q Consensus       614 L~~~----~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~  689 (1092)
                      ++..    ...++++|                                                                
T Consensus        76 l~~~~~~~~~~~~~~l----------------------------------------------------------------   91 (221)
T d1iknd_          76 LHLACEQGCLASVGVL----------------------------------------------------------------   91 (221)
T ss_dssp             HHHHHHHTCHHHHHHH----------------------------------------------------------------
T ss_pred             cccccccccccccchh----------------------------------------------------------------
Confidence            8842    12222222                                                                


Q ss_pred             hhHHHHHHHHHhCCC------CCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccC-CCCccHHHHHHHcCCHHHH
Q 001365          690 KLQVWLVQKAAEGGK------GPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRD-VNGWTALHWAAYCGRERTV  762 (1092)
Q Consensus       690 ~l~~~LvklLle~Ga------dvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D-~~G~TpLH~Aa~~G~~eiV  762 (1092)
                                +..+.      ..+.....|.||||+|+..|+.+++++|+..|+.++..+ .+|+||||+|+..|+.++|
T Consensus        92 ----------~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v  161 (221)
T d1iknd_          92 ----------TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV  161 (221)
T ss_dssp             ----------HHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             ----------hhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHH
Confidence                      22221      123345568999999999999999999999999998876 5799999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          763 ASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       763 ~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                      ++||++|+|+++      +|..|+||||+|+..++.+++++|++.+.
T Consensus       162 ~~Ll~~gad~~~------~~~~G~tpl~~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         162 SLLLKCGADVNR------VTYQGYSPYQLTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             HHHHTTTCCSCC------CCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             HHHHhcCCcccc------cCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            999999999888      78999999999999999999999999874

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3.8e-24  Score=225.96  Aligned_cols=206  Identities=16%  Similarity=0.106  Sum_probs=142.0

Q ss_pred             CCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCC-Cc
Q 001365          534 MSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCG-DI  612 (1092)
Q Consensus       534 ~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G-~T  612 (1092)
                      .+..+.||||+||..|+.+++++|++.|++++  ..+..|.||||+|+..+.  .++  +++|+..+...+..-... ..
T Consensus        41 ~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~--~~d~~g~tpL~~A~~~~~--~~~--~~~Ll~~~~~~~~~~~~~~~~  114 (255)
T d1oy3d_          41 QNDLGQTALHLAAILGEASTVEKLYAAGAGVL--VAERGGHTALHLACRVRA--HTC--ACVLLQPRPSHPRDASDTYLT  114 (255)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS--CCCTTSCCHHHHHTTTTC--HHH--HHHHSSSCCSSCCCC------
T ss_pred             cCCCCCCccchHHhhccccccccccccccccc--ccccccchhhhhhhccCc--hHH--HHHHHhhccchhcccchhhhh
Confidence            34567899999999999999999999999977  567779999999999875  444  456776655433211100 00


Q ss_pred             HHhhhHHHH--HHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhh
Q 001365          613 TSENLRMQF--GKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEK  690 (1092)
Q Consensus       613 pL~~~~~~l--vkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~  690 (1092)
                      .........  ..++.. ........     ...........+...+..|.||||.|+..+...                
T Consensus       115 ~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~----------------  172 (255)
T d1oy3d_         115 QSQDCTPDTSHAPAAVD-SQPNPENE-----EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE----------------  172 (255)
T ss_dssp             -----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHH----------------
T ss_pred             HHhhhcccchHHHHHHH-hhcchhHH-----HHHHhhhcCcccccccccCcccccccccccccc----------------
Confidence            000000000  000000 00000000     000000011122234678999999988766543                


Q ss_pred             hHHHHHHHHHhCCCCCCc-ccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcC
Q 001365          691 LQVWLVQKAAEGGKGPCV-LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG  769 (1092)
Q Consensus       691 l~~~LvklLle~GadvN~-~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~G  769 (1092)
                          ++++|++++++++. .+..|.||||+||..|+.++|++||++|++++.+|..|+||||+|+..|+.++|++|+++|
T Consensus       173 ----~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~G  248 (255)
T d1oy3d_         173 ----MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG  248 (255)
T ss_dssp             ----HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred             ----cccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence                67889999999875 4678999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 001365          770 AA  771 (1092)
Q Consensus       770 Ad  771 (1092)
                      |+
T Consensus       249 a~  250 (255)
T d1oy3d_         249 AP  250 (255)
T ss_dssp             CC
T ss_pred             CC
Confidence            96

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.91  E-value=5.5e-24  Score=229.15  Aligned_cols=220  Identities=18%  Similarity=0.117  Sum_probs=177.4

Q ss_pred             cHHHHHHHHCCCCCCCCCCC-------CCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh----hHH
Q 001365          551 IEVPAEIVAGGVLRCHTSSQ-------KVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN----LRM  619 (1092)
Q Consensus       551 veVv~~LL~~Gadin~~~~d-------~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~----~~~  619 (1092)
                      .+.++.++....+.......       ..|.||||.||..|+    +..+++|++.|+++|..|.+|.||||+    ++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~----~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~   86 (291)
T d1s70b_          11 NEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGD----TEEVLRLLERGADINYANVDGLTALHQACIDDNV   86 (291)
T ss_dssp             HHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTC----HHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCH
T ss_pred             HHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCC----HHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCc
Confidence            34555555555554432221       235699999999986    566678999999999999999999995    788


Q ss_pred             HHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHH
Q 001365          620 QFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQK  698 (1092)
Q Consensus       620 ~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~Lvkl  698 (1092)
                      +++++|+. +++....                      +..+.++|+.++..+...                    +++.
T Consensus        87 eiv~~Ll~~~~~~~~~----------------------~~~~~~~L~~a~~~~~~~--------------------~~~~  124 (291)
T d1s70b_          87 DMVKFLVENGANINQP----------------------DNEGWIPLHAAASCGYLD--------------------IAEY  124 (291)
T ss_dssp             HHHHHHHHTTCCTTCC----------------------CTTSCCHHHHHHHHTCHH--------------------HHHH
T ss_pred             eeeeeecccccccccc----------------------cccccccccccccccccc--------------------hhhc
Confidence            99988865 4443222                      246778888887755532                    6777


Q ss_pred             HHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHC-C--------------------------CCccccCCCCccHHH
Q 001365          699 AAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVA-G--------------------------VNINFRDVNGWTALH  751 (1092)
Q Consensus       699 Lle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~-G--------------------------adin~~D~~G~TpLH  751 (1092)
                      |+++|+..+..|..|.+|+++|+..++.+.+..|+.. |                          .+....+..|.||||
T Consensus       125 l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  204 (291)
T d1s70b_         125 LISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALH  204 (291)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHH
T ss_pred             ccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhh
Confidence            8899999999999999999999999999888887753 2                          234556789999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHH
Q 001365          752 WAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAE  827 (1092)
Q Consensus       752 ~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~  827 (1092)
                      +|+..|+.+++++|+++|+++|.      +|..|+||||+|+..|+.++|++|+++|     +|++++|+.|.||.
T Consensus       205 ~a~~~~~~~~~~~Ll~~g~din~------~~~~g~TpL~~A~~~g~~~iv~lLl~~G-----adv~~~d~~G~TaL  269 (291)
T d1s70b_         205 VAAAKGYTEVLKLLIQARYDVNI------KDYDGWTPLHAAAHWGKEEACRILVENL-----CDMEAVNKVGQTAF  269 (291)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTC------CCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCTT
T ss_pred             HHHHcCChhhhcccccceecccc------cccCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCCCCCHH
Confidence            99999999999999999999887      7799999999999999999999999999     78999999996653

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-23  Score=204.71  Aligned_cols=108  Identities=27%  Similarity=0.340  Sum_probs=93.3

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCC-CCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGA-APG  773 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GA-din  773 (1092)
                      ++++|+++|++++..+..|.++|+.++..|+.+.++.|+..+.+++..|..|.+|||+|+..|+.+++++|+++|+ +++
T Consensus        48 i~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~  127 (156)
T d1ihba_          48 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG  127 (156)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT
T ss_pred             ccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3445666777888888888999999999999999999999999999999999999999999999999999999887 444


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 001365          774 ALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESD  808 (1092)
Q Consensus       774 ~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~G  808 (1092)
                      .      +|..|.||||+|+..|+.+++++|+++|
T Consensus       128 ~------~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         128 H------RNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             C------CCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             c------cCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            4      7889999999999999999999999876

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=7.3e-23  Score=212.54  Aligned_cols=201  Identities=19%  Similarity=0.152  Sum_probs=162.7

Q ss_pred             chHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHH
Q 001365          574 RVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNS  648 (1092)
Q Consensus       574 ~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~  648 (1092)
                      .||||+||..|+  .+++. .+|...+.+++.+|.+|.||||+    ++.+++++|+. |++++...             
T Consensus         1 n~pLh~A~~~g~--~~~v~-~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~-------------   64 (229)
T d1ixva_           1 NYPLHQACMENE--FFKVQ-ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD-------------   64 (229)
T ss_dssp             CCHHHHHHHHTC--HHHHH-HHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGG-------------
T ss_pred             CHhHHHHHHcCC--HHHHH-HHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccc-------------
Confidence            389999999986  33332 24445678899999999999995    67788888865 66554321             


Q ss_pred             HHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCC--CCcccCCCCcHHHHHHHcCCH
Q 001365          649 KISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKG--PCVLDHCGQGVLHFAAALGYD  726 (1092)
Q Consensus       649 ~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~Gad--vN~~D~~G~TpLH~AA~~G~~  726 (1092)
                            ..+..++++++.+...+...                    +++.++..+..  ....+..+.|||+.++..++.
T Consensus        65 ------~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  118 (229)
T d1ixva_          65 ------YPDDSGWTPFHIACSVGNLE--------------------VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF  118 (229)
T ss_dssp             ------CCCTTSCCHHHHHHHHTCHH--------------------HHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ------cccccccccccccccccccc--------------------cccccccccccccccccccccccccccccccchh
Confidence                  12357888888776543321                    55666677664  455778899999999999999


Q ss_pred             hHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Q 001365          727 WALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALG-AAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLA  805 (1092)
Q Consensus       727 ~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~G-Adin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LL  805 (1092)
                      ++++.|+..|.+++.+|..|+||||+|+..|+.+++++|++.| .++|.      +|..|+||||+|+..|+.++|++|+
T Consensus       119 ~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~------~d~~g~TpLh~A~~~~~~~~v~~Ll  192 (229)
T d1ixva_         119 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW------QDKQGWTPLFHALAEGHGDAAVLLV  192 (229)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCC------CCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccc------cccccCCchhhhcccccHHHHHHHH
Confidence            9999999999999999999999999999999999999999987 45555      7899999999999999999999999


Q ss_pred             Hc-CCCCCcccCcccCCCCCcHH
Q 001365          806 ES-DLSSALSAISLNKKDGDVAE  827 (1092)
Q Consensus       806 e~-Ga~~h~adlnlkD~~G~ta~  827 (1092)
                      ++ |     ++++++|++|.||.
T Consensus       193 ~~~g-----ad~~~~d~~g~t~l  210 (229)
T d1ixva_         193 EKYG-----AEYDLVDNKGAKAE  210 (229)
T ss_dssp             HHHC-----CCSCCCCTTSCCTG
T ss_pred             HhcC-----CCCCCcCCCCCCHH
Confidence            74 7     78999999996653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.7e-22  Score=197.59  Aligned_cols=149  Identities=21%  Similarity=0.228  Sum_probs=106.3

Q ss_pred             hHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHhhhHH
Q 001365          540 ENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSENLRM  619 (1092)
Q Consensus       540 TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~~~~~  619 (1092)
                      ||||.||+.|+.++|+.||++|++++   .+..|+||||+|+..++  .+++  .+++..                    
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~---~~~~g~t~L~~a~~~~~--~~~~--~~~~~~--------------------   56 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGH--FSTT--EVLLRA--------------------   56 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTC--HHHH--HHHHTT--------------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc---cccCCCccccccccccc--cccc--cccccc--------------------
Confidence            89999999999999999999999865   46779999999998864  2222  222221                    


Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHH
Q 001365          620 QFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKA  699 (1092)
Q Consensus       620 ~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklL  699 (1092)
                                                                                                      
T Consensus        57 --------------------------------------------------------------------------------   56 (153)
T d1awcb_          57 --------------------------------------------------------------------------------   56 (153)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 001365          700 AEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPT  779 (1092)
Q Consensus       700 le~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n  779 (1092)
                         ....+..+..+.+++|.++...+.+++++|+.+|++++.+|.+|+||||+||..|+.++|++|+++|++++.     
T Consensus        57 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~-----  128 (153)
T d1awcb_          57 ---GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-----  128 (153)
T ss_dssp             ---TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-----
T ss_pred             ---cccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcc-----
Confidence               112222334455667777777777777777777777777777777777777777777777777777777665     


Q ss_pred             CCCCCCCCHHHHHHHcCcHHHHHHH
Q 001365          780 PKYPSGRTPADLASSIGHKGIAGYL  804 (1092)
Q Consensus       780 ~~D~~G~TPLhlAa~~G~~eiv~~L  804 (1092)
                       +|..|.||||+|+.+|+.+|+++|
T Consensus       129 -~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         129 -QSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             -CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -cCCCCCCHHHHHHHcCCHHHHHhC
Confidence             566777777777777777777665

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.7e-22  Score=199.85  Aligned_cols=104  Identities=25%  Similarity=0.294  Sum_probs=90.0

Q ss_pred             HHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 001365          697 QKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALS  776 (1092)
Q Consensus       697 klLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~  776 (1092)
                      +.|++.+.+++..+..|.+||++|+..++.++++.++++|+++|.+|..|+||||+||..|+.+++++|+ .|++++.  
T Consensus        52 ~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~--  128 (156)
T d1bd8a_          52 LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHR--  128 (156)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTC--
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccc--
Confidence            3455667777778888899999999999999999999999999999999999999999999999998877 6888776  


Q ss_pred             CCCCCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 001365          777 DPTPKYPSGRTPADLASSIGHKGIAGYLAES  807 (1092)
Q Consensus       777 D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~  807 (1092)
                          +|..|+||||+|+..|+.+|+++|+++
T Consensus       129 ----~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         129 ----RDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             ----CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ----cCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence                778999999999999999999999864

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.2e-21  Score=206.98  Aligned_cols=217  Identities=13%  Similarity=0.055  Sum_probs=154.3

Q ss_pred             cccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHHh
Q 001365          536 QQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITSE  615 (1092)
Q Consensus       536 ~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL~  615 (1092)
                      ..+.||||+||..|+.+++++|++.|...+  ..+..+.+|+++|+..+.    .....+++....+....+..|.++++
T Consensus        37 ~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~  110 (285)
T d1wdya_          37 EGGWTPLHNAVQMSREDIVELLLRHGADPV--LRKKNGATPFLLAAIAGS----VKLLKLFLSKGADVNECDFYGFTAFM  110 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHHTC----HHHHHHHHHTTCCTTCBCTTCCBHHH
T ss_pred             CCCCCHHHHHHHcCCHHHhhhhcccccccc--ccccccchhhHHHhhcCC----ccccchhhhhcccccccccCCCchhH
Confidence            457899999999999999999999999866  555669999999998874    33334667777777777889999998


Q ss_pred             h----hHHHHHHH-HhcCCCCCCCCCC---------CCchhhH--------HHHHHHhh-----hhccCCCcchHHHHhh
Q 001365          616 N----LRMQFGKL-LCLTSVSTPNYDP---------SNLSDIS--------QLNSKISS-----LLKDENDDWDLMLKLT  668 (1092)
Q Consensus       616 ~----~~~~lvkL-Ll~gadv~~~~~~---------~~~~~~~--------~ll~~I~~-----Ll~~d~~g~t~L~~a~  668 (1092)
                      .    +...++.. +....+.......         .+...+.        +.+..+..     +...+..+.+++....
T Consensus       111 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~  190 (285)
T d1wdya_         111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL  190 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCccccccc
Confidence            5    33344433 3444443332221         1111110        00111100     0011222333333222


Q ss_pred             hhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHH-CCCCccccCCCCc
Q 001365          669 AEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTV-AGVNINFRDVNGW  747 (1092)
Q Consensus       669 ~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~-~Gadin~~D~~G~  747 (1092)
                      ....                .....-+++.|+++|+++|.+|..|.||||+|+..|+.++|++||+ .|+++|.+|.+|.
T Consensus       191 ~~~~----------------~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~  254 (285)
T d1wdya_         191 LSSD----------------DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK  254 (285)
T ss_dssp             HCSC----------------TTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSC
T ss_pred             cccc----------------chHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCC
Confidence            2111                1122337888999999999999999999999999999999999998 4999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          748 TALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       748 TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      ||||+|+..|+.++|++||++|||+|+
T Consensus       255 TpL~~A~~~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         255 TALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            999999999999999999999999998

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=7.9e-22  Score=201.76  Aligned_cols=184  Identities=12%  Similarity=0.008  Sum_probs=142.7

Q ss_pred             CcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCcccccCCCCcHH
Q 001365          535 SQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVADNCGDITS  614 (1092)
Q Consensus       535 ~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D~~G~TpL  614 (1092)
                      +..|.|||||||..|+.+++++||+.|+.++  ..+..+.+|+++++..+.  .....+ ...............|.+..
T Consensus        20 d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n--~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~   94 (209)
T d1ot8a_          20 DKTGETSLHLAARFARADAAKRLLDAGADAN--SQDNTGRTPLHAAVAADA--MGVFQI-LLRNRATNLNARMHDGTTPL   94 (209)
T ss_dssp             HHHCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTC--HHHHHH-HHTCTTCCTTCCCTTCCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhhccccc--cccccccccccccccccc--cccccc-cccccccccccccccccccc
Confidence            4568999999999999999999999999977  566779999999998874  333322 22222233333455666666


Q ss_pred             hh----hHHHHHHH-HhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHh
Q 001365          615 EN----LRMQFGKL-LCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKE  689 (1092)
Q Consensus       615 ~~----~~~~lvkL-Ll~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~  689 (1092)
                      +.    ....+..+ +..+++++..                      +..++|+|+.++..+...               
T Consensus        95 ~~~~~~~~~~~~~~L~~~~~~~~~~----------------------~~~~~t~l~~~~~~~~~~---------------  137 (209)
T d1ot8a_          95 ILAARLAIEGMVEDLITADADINAA----------------------DNSGKTALHWAAAVNNTE---------------  137 (209)
T ss_dssp             HHHHHTTCTTHHHHHHHTTCCTTCB----------------------CTTSCBHHHHHHHTTCHH---------------
T ss_pred             cccccccchhhhhhhhhhccccccc----------------------CCCCCCcchhhcccCcce---------------
Confidence            63    22223333 3445544332                      357889999887655422               


Q ss_pred             hhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHH
Q 001365          690 KLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASL  765 (1092)
Q Consensus       690 ~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~L  765 (1092)
                           +++.+++.+.++|..|..|.||||+||..|+.++|++||++|+|++.+|..|+||||+|+..|+.+||++|
T Consensus       138 -----~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         138 -----AVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             -----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -----eeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence                 67888999999999999999999999999999999999999999999999999999999999999999986

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.87  E-value=7.7e-22  Score=209.65  Aligned_cols=197  Identities=14%  Similarity=0.045  Sum_probs=148.2

Q ss_pred             cCCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCC---CCcccccCC
Q 001365          533 LMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHI---PDVDVADNC  609 (1092)
Q Consensus       533 l~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~G---advna~D~~  609 (1092)
                      ..+..+.||||+||..|+.+++++||+.|++++  ..+..|.||||+|+..++  .++.  .++...+   ..++..+..
T Consensus        69 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n--~~~~~g~t~l~~a~~~~~--~~~~--~~l~~~~~~~~~~~~~~~~  142 (277)
T d2fo1e1          69 AMDCDENTPLMLAVLARRRRLVAYLMKAGADPT--IYNKSERSALHQAAANRD--FGMM--VYMLNSTKLKGDIEELDRN  142 (277)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTCCCHHHHHHHTTC--HHHH--HHHTTSHHHHHTTSCCCTT
T ss_pred             ccCCCCCeeeccccccccccccccccccccccc--cccccccccccchhhhcc--hhhh--hhhhhcccccccccccccc
Confidence            356678999999999999999999999999977  566779999999999885  3333  3444433   356667777


Q ss_pred             CCcHHhh-------hHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHH
Q 001365          610 GDITSEN-------LRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKL  682 (1092)
Q Consensus       610 G~TpL~~-------~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~l  682 (1092)
                      +.++.+.       .....+.++...........             .......+..++++|+.++..+...        
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~g~t~L~~~~~~~~~~--------  201 (277)
T d2fo1e1         143 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG-------------AARKDSEKYKGRTALHYAAQVSNMP--------  201 (277)
T ss_dssp             SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCS-------------GGGTSSSSCCCCCTHHHHHSSCCHH--------
T ss_pred             cchhHHHHHhcccccccccccccccccccccccc-------------cccccccccCCCCcccccccccccc--------
Confidence            8877763       22333333322211111100             0001123467899999887755432        


Q ss_pred             HHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHH
Q 001365          683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTV  762 (1092)
Q Consensus       683 L~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV  762 (1092)
                                 .+..++...+.+++.+|..|+||||+||..|+.++|++||++|+|+|.+|.+|+||||+|+..|+.+||
T Consensus       202 -----------~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv  270 (277)
T d2fo1e1         202 -----------IVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV  270 (277)
T ss_dssp             -----------HHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             -----------ccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence                       133456788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 001365          763 ASLIA  767 (1092)
Q Consensus       763 ~~LLe  767 (1092)
                      ++|++
T Consensus       271 ~lL~~  275 (277)
T d2fo1e1         271 DIFDR  275 (277)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            99985

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.4e-22  Score=206.54  Aligned_cols=174  Identities=18%  Similarity=0.173  Sum_probs=138.6

Q ss_pred             CCchHHHHHHHcCCCchhHH--HHHHHHhCCCCcccccCCCCcHHhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHH
Q 001365          572 VGRVPFYVTCSNRLSCSEVR--EFEYRASHIPDVDVADNCGDITSENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSK  649 (1092)
Q Consensus       572 ~G~TPLHlAa~ng~~~seVv--~fe~Ll~~Gadvna~D~~G~TpL~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~  649 (1092)
                      +|.||||+|+.+|.  .++.  .++++...|+++|.+|.+|.||||                                  
T Consensus         1 dG~t~Lh~A~~~g~--~~~~~~li~~~~~~~~~in~~d~~g~TpLh----------------------------------   44 (221)
T d1iknd_           1 DGDSFLHLAIIHEE--KALTMEVIRQVKGDLAFLNFQNNLQQTPLH----------------------------------   44 (221)
T ss_dssp             CCCCTTHHHHHTTC--SSSSSCCCC-----CCCCCCCCTTCCCHHH----------------------------------
T ss_pred             CCChHHHHHHHcCC--HHHHHHHHHHHHhCCCCcccCCCCCCcccc----------------------------------
Confidence            49999999999985  2221  124556677777777766666666                                  


Q ss_pred             HhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHH
Q 001365          650 ISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWAL  729 (1092)
Q Consensus       650 I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iV  729 (1092)
                                      .|+..+...                    +++.|++.|++++.+|..|.||||+|+..|+.+++
T Consensus        45 ----------------~A~~~~~~~--------------------iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~   88 (221)
T d1iknd_          45 ----------------LAVITNQPE--------------------IAEALLGAGCDPELRDFRGNTPLHLACEQGCLASV   88 (221)
T ss_dssp             ----------------HHHHTTCHH--------------------HHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             ----------------ccccccccc--------------------ccccccccccccccccccccccccccccccccccc
Confidence                            333322211                    67778899999999999999999999999999999


Q ss_pred             HHHHHCCCCcc------ccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHH
Q 001365          730 EPTTVAGVNIN------FRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGY  803 (1092)
Q Consensus       730 k~LL~~Gadin------~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~  803 (1092)
                      +.|+..+.+..      .....|.||||+|+..|+.+++.+|+..|+.++..     .+.+|.||||+|+..|+.+++++
T Consensus        89 ~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~-----~~~~G~T~L~~A~~~g~~~~v~~  163 (221)
T d1iknd_          89 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ-----EPCNGRTALHLAVDLQNPDLVSL  163 (221)
T ss_dssp             HHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-----CTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             chhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccc-----cccCCCCccccccccccHHHHHH
Confidence            99999876543      34567899999999999999999999999998874     34679999999999999999999


Q ss_pred             HHHcCCCCCcccCcccCCCCCcHH
Q 001365          804 LAESDLSSALSAISLNKKDGDVAE  827 (1092)
Q Consensus       804 LLe~Ga~~h~adlnlkD~~G~ta~  827 (1092)
                      |+++|     +|++++|.+|.||.
T Consensus       164 Ll~~g-----ad~~~~~~~G~tpl  182 (221)
T d1iknd_         164 LLKCG-----ADVNRVTYQGYSPY  182 (221)
T ss_dssp             HHTTT-----CCSCCCCTTCCCGG
T ss_pred             HHhcC-----CcccccCCCCCCHH
Confidence            99988     78999999996663

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.84  E-value=3.4e-23  Score=232.48  Aligned_cols=227  Identities=8%  Similarity=-0.012  Sum_probs=161.3

Q ss_pred             CcccChHHHHHHHcCCcHHHHH---HHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHhCCCCccccc--CC
Q 001365          535 SQQEAENCKWSCMFGEIEVPAE---IVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRASHIPDVDVAD--NC  609 (1092)
Q Consensus       535 ~~~~~TpLH~A~~fG~veVv~~---LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~~Gadvna~D--~~  609 (1092)
                      +..+.||||+||..|+.+++++   |++.|++++  ..+..|+||||+||.+|+  .++  +++|++.|++++..+  .+
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in--~~~~~g~taL~~Aa~~G~--~~~--v~~Ll~~g~~~~~~~~~~~  160 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK--VIQAENYQAFRLAAENGH--LHV--LNRLCELAPTEIMAMIQAE  160 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC----CHHHHHHHHHHHHTTC--HHH--HHHHHHSCTTTHHHHHSHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccc--ccCCCCCCHHHHHHHCCC--HHH--HHHHHHcCCCccccccccC
Confidence            4456899999999999877665   799999987  566779999999999997  444  478999999999875  46


Q ss_pred             CCcHHhh----hHHHHHHHHhc-CCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHH
Q 001365          610 GDITSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQ  684 (1092)
Q Consensus       610 G~TpL~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~  684 (1092)
                      |.||||+    ++.+++++|+. ++....              ..+     .+.++.++++.|+..++.+          
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~--------------~~~-----~~~~~~t~l~~A~~~g~~~----------  211 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTEAT--------------AMI-----QAENYYAFRWAAVGRGHHN----------  211 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGGHH--------------HHH-----HHHHHHHHHHHHSTTCCHH----------
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCcccc--------------ccc-----ccCCCcchhhHHhhcCHHH----------
Confidence            8999995    88899999875 322100              000     1124556666666655532          


Q ss_pred             HHHHhhhHHHHHHHHHhCCCCCCccc-------CCCCcHHHHHHHcCCHhHHHHHHHCCCC--ccccCC-------CCcc
Q 001365          685 KLLKEKLQVWLVQKAAEGGKGPCVLD-------HCGQGVLHFAAALGYDWALEPTTVAGVN--INFRDV-------NGWT  748 (1092)
Q Consensus       685 ~a~k~~l~~~LvklLle~GadvN~~D-------~~G~TpLH~AA~~G~~~iVk~LL~~Gad--in~~D~-------~G~T  748 (1092)
                                ++++|++.|++++..+       ..+.++++.++..+..+....|+....+  ++..+.       .+.|
T Consensus       212 ----------iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  281 (346)
T d2ajaa1         212 ----------VINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLR  281 (346)
T ss_dssp             ----------HHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHH
T ss_pred             ----------HHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhh
Confidence                      7888999998876543       3344666666666666655555544332  233322       3468


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 001365          749 ALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAES  807 (1092)
Q Consensus       749 pLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~  807 (1092)
                      +|+.|+..|+.++|++|++.++...... .+..+.+|+||||+||+.||.++|++||+.
T Consensus       282 ~l~~a~~~~~ld~v~~Ll~~~~~~~~~~-~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         282 NLIRRNDEVLLDDIRFLLSIPGIKALAP-TATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHCCGGGHHHHHHHHTSTTTGGGSS-CCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HHHHHhcCChHHHHHHHHhCcChhhhcc-cccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            9999999999999999999887543322 234567899999999999999999999974

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.4e-21  Score=187.62  Aligned_cols=120  Identities=26%  Similarity=0.322  Sum_probs=108.6

Q ss_pred             cchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCc
Q 001365          660 DWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNI  739 (1092)
Q Consensus       660 g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadi  739 (1092)
                      +.++||.|+..|++.                    +++.|+++|+++|.+|..|.||||+|+ .|+.++|++|+++|+++
T Consensus         3 ~~~~L~~Aa~~G~~~--------------------~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~   61 (125)
T d1bi7b_           3 SADWLATAAARGRVE--------------------EVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP   61 (125)
T ss_dssp             STTHHHHHHHHTCHH--------------------HHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC
T ss_pred             ChhHHHHHHHCCCHH--------------------HHHHHHHcCCccccccccccccccccc-ccccccccccccccccc
Confidence            446677776666543                    888999999999999999999999775 79999999999999999


Q ss_pred             cccCCCCc-cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 001365          740 NFRDVNGW-TALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAE  806 (1092)
Q Consensus       740 n~~D~~G~-TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe  806 (1092)
                      |.+|..|. ||||+||..|+.++|++|+++|++++.      +|..|+||||+|+.+|+.+++++|+.
T Consensus        62 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~------~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          62 NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV------RDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSC------CCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccccccccccccccc------ccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999876 699999999999999999999999887      78999999999999999999999985

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.5e-20  Score=185.28  Aligned_cols=205  Identities=17%  Similarity=0.086  Sum_probs=157.8

Q ss_pred             CCchHHHHHHHcCCCchhHHH--HHHHHhCCCCcccccCCCCcHHhh----hHHHHHHHHh-cCCCCCCCCCCCCchhhH
Q 001365          572 VGRVPFYVTCSNRLSCSEVRE--FEYRASHIPDVDVADNCGDITSEN----LRMQFGKLLC-LTSVSTPNYDPSNLSDIS  644 (1092)
Q Consensus       572 ~G~TPLHlAa~ng~~~seVv~--fe~Ll~~Gadvna~D~~G~TpL~~----~~~~lvkLLl-~gadv~~~~~~~~~~~~~  644 (1092)
                      +|.||||+||..|+  .+++.  ++++...|+++|.+|..|.||||.    ++.+++++|+ .+++.+...         
T Consensus         2 dG~TpLh~A~~~g~--~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~---------   70 (228)
T d1k1aa_           2 DGDTPLHIAVVQGN--LPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD---------   70 (228)
T ss_dssp             TTCCHHHHHHHTTC--HHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC---------
T ss_pred             CCccHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccc---------
Confidence            59999999999986  44443  233457999999999999999995    6778888764 466654432         


Q ss_pred             HHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcC
Q 001365          645 QLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALG  724 (1092)
Q Consensus       645 ~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G  724 (1092)
                                   ..+.++++.+........       +.         .+...........+.......++||.+....
T Consensus        71 -------------~~~~~~~~~a~~~~~~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  121 (228)
T d1k1aa_          71 -------------RHGQTAAHLACEHRSPTC-------LR---------ALLDSAAPGTLDLEARNYDGLTALHVAVNTE  121 (228)
T ss_dssp             -------------TTSCCHHHHHHHTTCHHH-------HH---------HHHHHSCTTSCCTTCCCTTSCCHHHHHHHHT
T ss_pred             -------------cccccccccccccccccc-------hh---------hhhhccccccccccccccccccccccccccc
Confidence                         355566666554433210       00         0111111223345667778899999999999


Q ss_pred             CHhHHHHHHHCCCCcc-ccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHH
Q 001365          725 YDWALEPTTVAGVNIN-FRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGY  803 (1092)
Q Consensus       725 ~~~iVk~LL~~Gadin-~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~  803 (1092)
                      .......|.....+.. ..+..|.+|||+|+..+...+++.++++|.+++.      +|..|.||||+|+..|+.+++++
T Consensus       122 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~------~d~~g~t~L~~A~~~g~~~~v~~  195 (228)
T d1k1aa_         122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA------QMYSGSSALHSASGRGLLPLVRT  195 (228)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------BCTTSCBHHHHHHHHTCHHHHHH
T ss_pred             cchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhcccccc------ccccCcchHHHHHHcCCHHHHHH
Confidence            9999999999887754 4566899999999999999999999999998877      77999999999999999999999


Q ss_pred             HHHcCCCCCcccCcccCCCCCcHH
Q 001365          804 LAESDLSSALSAISLNKKDGDVAE  827 (1092)
Q Consensus       804 LLe~Ga~~h~adlnlkD~~G~ta~  827 (1092)
                      |+++|     +|++++|.+|.||.
T Consensus       196 Ll~~G-----ad~n~~d~~G~TpL  214 (228)
T d1k1aa_         196 LVRSG-----ADSSLKNCHNDTPL  214 (228)
T ss_dssp             HHHTT-----CCTTCCCTTSCCTT
T ss_pred             HHHCC-----CCCCCCCCCCCCHH
Confidence            99999     78999999997763

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=3.8e-21  Score=182.87  Aligned_cols=102  Identities=24%  Similarity=0.211  Sum_probs=95.7

Q ss_pred             CcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHH
Q 001365          714 QGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLAS  793 (1092)
Q Consensus       714 ~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa  793 (1092)
                      .|||++||..|+.++|++||++|++++.+|..|+||||+||..|+.+++++|+++|+++|.      +|..|+||||+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~------~d~~g~tpLh~A~   76 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA------PDKHHITPLLSAV   76 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTC------CSSSCSCHHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeee------cccccccchhhhh
Confidence            4899999999999999999999999999999999999999999999999999999999887      7789999999999


Q ss_pred             HcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH
Q 001365          794 SIGHKGIAGYLAESDLSSALSAISLNKKDGDVA  826 (1092)
Q Consensus       794 ~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta  826 (1092)
                      .+|+.+++++|+++|     ++++.+|.+|.||
T Consensus        77 ~~~~~~~v~~Ll~~G-----ad~~~~d~~G~t~  104 (118)
T d1myoa_          77 YEGHVSCVKLLLSKG-----ADKTVKGPDGLTA  104 (118)
T ss_dssp             TTTCCHHHHHHHTTC-----CCSSSSSSSTCCC
T ss_pred             hcCchhhhhhhhccc-----ccceeeCCCCCCH
Confidence            999999999999988     7899999999665

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.5e-21  Score=184.81  Aligned_cols=109  Identities=30%  Similarity=0.372  Sum_probs=100.7

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      +++.|+++|+++|.+|..|+||||+||..|+.+++++|+++|+++|.+|.+|+||||+||.+|+.++|++|+++||+++.
T Consensus        16 ~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~   95 (130)
T d1ycsb1          16 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA   95 (130)
T ss_dssp             HHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHHHHHHcCCCccc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCCCCCCCCHHHHH--HHcCcHHHHHHHHHcC
Q 001365          775 LSDPTPKYPSGRTPADLA--SSIGHKGIAGYLAESD  808 (1092)
Q Consensus       775 ~~D~n~~D~~G~TPLhlA--a~~G~~eiv~~LLe~G  808 (1092)
                      .+     +..|.||+++|  +..|+.+++++|++.+
T Consensus        96 ~~-----~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          96 MT-----YSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             CC-----SSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             cc-----CCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            43     24688987776  5779999999999754

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=8.2e-22  Score=187.54  Aligned_cols=93  Identities=29%  Similarity=0.268  Sum_probs=90.1

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      +++.|+++|+++|.+|..|+||||+||..|+.+++++|+++|+++|.+|..|+||||+||..|+.++|++|+++|++++.
T Consensus        17 ~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~   96 (118)
T d1myoa_          17 EVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV   96 (118)
T ss_dssp             HHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSS
T ss_pred             HHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhhhhhhhccccccee
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCCCCCCCCCCHHHHHH
Q 001365          775 LSDPTPKYPSGRTPADLAS  793 (1092)
Q Consensus       775 ~~D~n~~D~~G~TPLhlAa  793 (1092)
                            +|..|.||||+|.
T Consensus        97 ------~d~~G~t~l~~a~  109 (118)
T d1myoa_          97 ------KGPDGLTALEATD  109 (118)
T ss_dssp             ------SSSSTCCCCCTCS
T ss_pred             ------eCCCCCCHHHHHh
Confidence                  7899999999984

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=5.3e-21  Score=209.58  Aligned_cols=192  Identities=17%  Similarity=0.132  Sum_probs=114.6

Q ss_pred             CcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHHHcCCCchhHHHHHHHHh-CCCCcccccCCCCcH
Q 001365          535 SQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLSCSEVREFEYRAS-HIPDVDVADNCGDIT  613 (1092)
Q Consensus       535 ~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa~ng~~~seVv~fe~Ll~-~Gadvna~D~~G~Tp  613 (1092)
                      +..+.|||||||..|++++|++||+.|++++  ..|..|+||||+||..++ +.+...++.++. ....++..|..|+||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~~A~~~~~-~~~~~~~~~ll~~l~~~~~~~d~~g~t~  180 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRL--YGDNMGESCLVKAVKSVN-NYDSGTFEALLDYLYPCLILEDSMNRTI  180 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--BCCTTCCCHHHHHHHSSH-HHHTTCHHHHHHHHGGGGGEECTTCCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--cCCcccccHHHHhhhccc-chhhhhHHHHHHHHhhhhhhcccccCCH
Confidence            4567899999999999999999999999977  567779999999998653 111111111111 123455566667777


Q ss_pred             HhhhHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHH
Q 001365          614 SENLRMQFGKLLCLTSVSTPNYDPSNLSDISQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQV  693 (1092)
Q Consensus       614 L~~~~~~lvkLLl~gadv~~~~~~~~~~~~~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~  693 (1092)
                      ||+.                                                  +..........       +++. ..+
T Consensus       181 lh~~--------------------------------------------------~~~~~~~~~~~-------~~~~-~~~  202 (301)
T d1sw6a_         181 LHHI--------------------------------------------------IITSGMTGCSA-------AAKY-YLD  202 (301)
T ss_dssp             HHHH--------------------------------------------------HHHHTSTTCHH-------HHHH-HHH
T ss_pred             HHHH--------------------------------------------------HHHhCccccHH-------HHHH-HHH
Confidence            6632                                                  21111110000       0000 011


Q ss_pred             HHHHHHHhCCCC-CCcccCCCCcHHHHHHHcCCHhHHHHHHH---CCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcC
Q 001365          694 WLVQKAAEGGKG-PCVLDHCGQGVLHFAAALGYDWALEPTTV---AGVNINFRDVNGWTALHWAAYCGRERTVASLIALG  769 (1092)
Q Consensus       694 ~LvklLle~Gad-vN~~D~~G~TpLH~AA~~G~~~iVk~LL~---~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~G  769 (1092)
                      .++.+++..+.. .......+.++++.+........+..+..   .+..+|.+|.+|+||||+||+.|+.++|++||++|
T Consensus       203 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~G  282 (301)
T d1sw6a_         203 ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG  282 (301)
T ss_dssp             HHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            134445554443 44455566777777766655444432211   12347889999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHH
Q 001365          770 AAPGALSDPTPKYPSGRTPADLAS  793 (1092)
Q Consensus       770 Adin~~~D~n~~D~~G~TPLhlAa  793 (1092)
                      |++++      +|..|+||||+|+
T Consensus       283 Ad~~~------~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         283 ADPFI------ANKSGLRPVDFGA  300 (301)
T ss_dssp             CCTTC------CCTTSCCGGGGTC
T ss_pred             CCCCC------CCCCCCCHHHHcC
Confidence            99988      7899999999985

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2e-19  Score=179.61  Aligned_cols=108  Identities=19%  Similarity=0.175  Sum_probs=98.5

Q ss_pred             HHHHHhCCCCCCcc------cCCCCcHHHHHHHc---CCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHH
Q 001365          696 VQKAAEGGKGPCVL------DHCGQGVLHFAAAL---GYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLI  766 (1092)
Q Consensus       696 vklLle~GadvN~~------D~~G~TpLH~AA~~---G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LL  766 (1092)
                      +..++..|++++..      +..|+||||+|+..   |+.++|++||++|+++|.+|..|+||||+||..|+.++|++|+
T Consensus        22 l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll  101 (154)
T d1dcqa1          22 LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL  101 (154)
T ss_dssp             HHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccccccccccccccc
Confidence            34456778887765      77899999999985   6789999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 001365          767 ALGAAPGALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDL  809 (1092)
Q Consensus       767 e~GAdin~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga  809 (1092)
                      ++|++++.      +|..|+||||+|+..|+.+++++|++.+.
T Consensus       102 ~~gad~~~------~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1         102 RGKASIEI------ANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HTTCCTTC------CCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ccCccccc------cCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            99999988      78999999999999999999999999774

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.8e-19  Score=170.44  Aligned_cols=73  Identities=23%  Similarity=0.189  Sum_probs=67.4

Q ss_pred             HHHHHHhCCCCCCcccCCCC-cHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHH
Q 001365          695 LVQKAAEGGKGPCVLDHCGQ-GVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIA  767 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~-TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe  767 (1092)
                      ++++|+++|+++|.+|..|. ||||+||..|+.++|++|+++|++++.+|..|+||||+|+.+|+.++|++|++
T Consensus        50 ~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          50 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            56677788888888888776 69999999999999999999999999999999999999999999999999985

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.1e-19  Score=169.80  Aligned_cols=101  Identities=24%  Similarity=0.211  Sum_probs=94.4

Q ss_pred             cHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 001365          715 GVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYPSGRTPADLASS  794 (1092)
Q Consensus       715 TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~~G~TPLhlAa~  794 (1092)
                      ++||.||..|+.++|+.|+++|+|+|.+|.+|+||||+||..|+.+++++|+++|+++|.      +|.+|+||||+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~------~d~~g~tpLh~A~~   76 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA------ADSDGWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC------CCTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccccccccccc------ccccCcccccccch
Confidence            689999999999999999999999999999999999999999999999999999999887      78999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCcccCcccCC-CCCcH
Q 001365          795 IGHKGIAGYLAESDLSSALSAISLNKK-DGDVA  826 (1092)
Q Consensus       795 ~G~~eiv~~LLe~Ga~~h~adlnlkD~-~G~ta  826 (1092)
                      .|+.+++++|+++|     ++++..+. .|.++
T Consensus        77 ~g~~~~v~~Ll~~g-----a~v~~~~~~~~~~~  104 (130)
T d1ycsb1          77 CNNVQVCKFLVESG-----AAVFAMTYSDMQTA  104 (130)
T ss_dssp             TTCHHHHHHHHHTT-----CCTTCCCSSSCCCH
T ss_pred             hhHHHHHHHHHHcC-----CCcccccCCCCCCH
Confidence            99999999999998     67887765 46654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.76  E-value=9.6e-21  Score=212.36  Aligned_cols=223  Identities=7%  Similarity=-0.099  Sum_probs=115.3

Q ss_pred             CCCCchHHHHHHHcCCCchhHH-HHHHHHhCCCCcccccCCCCcHHhh----hHHHHHHHHhc-CCCCCCCCCCCCchhh
Q 001365          570 QKVGRVPFYVTCSNRLSCSEVR-EFEYRASHIPDVDVADNCGDITSEN----LRMQFGKLLCL-TSVSTPNYDPSNLSDI  643 (1092)
Q Consensus       570 d~~G~TPLHlAa~ng~~~seVv-~fe~Ll~~Gadvna~D~~G~TpL~~----~~~~lvkLLl~-gadv~~~~~~~~~~~~  643 (1092)
                      +..|.||||+||.+|+  .+++ .+++|+..|+++|..|.+|.||||.    ++.+++++|.. |++++...        
T Consensus        87 ~~~~~t~L~~Aa~~g~--~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~--------  156 (346)
T d2ajaa1          87 GIKSEVICFVAAITGC--SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM--------  156 (346)
T ss_dssp             TCCHHHHHHHHHHHCC--HHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHH--------
T ss_pred             cCCCCcHHHHHHHhCC--HHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccc--------
Confidence            4569999999999996  5544 3456889999998887666666663    55555555432 33321100        


Q ss_pred             HHHHHHHhhhhccCCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCC---CcccCCCCcHHHHH
Q 001365          644 SQLNSKISSLLKDENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGP---CVLDHCGQGVLHFA  720 (1092)
Q Consensus       644 ~~ll~~I~~Ll~~d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~Gadv---N~~D~~G~TpLH~A  720 (1092)
                                  .+.+|+||||.|+..|+..                    ++++|++.|+++   +..+..|.||||.|
T Consensus       157 ------------~~~~g~t~L~~Aa~~g~~~--------------------iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A  204 (346)
T d2ajaa1         157 ------------IQAENYHAFRLAAENGHLH--------------------VLNRLCELAPTEATAMIQAENYYAFRWAA  204 (346)
T ss_dssp             ------------HSHHHHHHHHHHHHTTCHH--------------------HHHHHHHSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             ------------cccCCCChhHHHHHHhhHH--------------------HHHHHHHcCCcccccccccCCCcchhhHH
Confidence                        0023445555554444432                    444555554432   22223344444445


Q ss_pred             HHcCCHhHHHHHHHCCCCccccCC-------CCccHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCC-------CCC
Q 001365          721 AALGYDWALEPTTVAGVNINFRDV-------NGWTALHWAAYCGRERTVASLIALGAAPGALSDPTPKYP-------SGR  786 (1092)
Q Consensus       721 A~~G~~~iVk~LL~~Gadin~~D~-------~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~~~D~n~~D~-------~G~  786 (1092)
                      +..|+.++|++|+++|++++..+.       .+.++++.++..+..++...|.....+..    .+..+.       .+.
T Consensus       205 ~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~~~~~~~~~~~  280 (346)
T d2ajaa1         205 VGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGV----FDLVTKSECLQGFYML  280 (346)
T ss_dssp             STTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSC----CCCSSHHHHHHHHHHH
T ss_pred             hhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhccccc----HhHHhcccccccchhh
Confidence            555555555555555554433221       12233333333333333222222111110    011111       134


Q ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH-HHHhhhhhcccc
Q 001365          787 TPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA-EVTGATAVQTVP  838 (1092)
Q Consensus       787 TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta-~iaa~~~v~~l~  838 (1092)
                      |+|+.|+..|+.+++++|++.+......+.+..+.+|.|+ .+++..+...++
T Consensus       281 ~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v  333 (346)
T d2ajaa1         281 RNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC  333 (346)
T ss_dssp             HHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHH
T ss_pred             hHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHH
Confidence            7888999999999999999988765556666666778665 555554444433

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.2e-18  Score=168.49  Aligned_cols=124  Identities=21%  Similarity=0.279  Sum_probs=115.3

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      +++.|+++|+++|.+|..|.||||+|+ .|+.+++++|+++|++++.++..|.|||+.++..++.+++++|+..+.+++.
T Consensus        16 ~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~   94 (156)
T d1ihba_          16 QLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI   94 (156)
T ss_dssp             HHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccccccccccccccccc
Confidence            889999999999999999999999886 7999999999999999999999999999999999999999999999999877


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHH
Q 001365          775 LSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVT  829 (1092)
Q Consensus       775 ~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~ia  829 (1092)
                            .|..|.+|||+|+..++.+++++|+++|.    .+++.+|..|.||...
T Consensus        95 ------~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~----~~~~~~d~~g~TpL~~  139 (156)
T d1ihba_          95 ------EDNEGNLPLHLAAKEGHLRVVEFLVKHTA----SNVGHRNHKGDTACDL  139 (156)
T ss_dssp             ------CCTTSCCHHHHHHHTTCHHHHHHHHHHSC----CCTTCCCTTSCCHHHH
T ss_pred             ------ccccccccccccccccccccccccccccc----ccccccCCCCCCHHHH
Confidence                  77999999999999999999999999984    4789999999666433

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.7e-18  Score=167.50  Aligned_cols=123  Identities=23%  Similarity=0.257  Sum_probs=110.7

Q ss_pred             HHHHHH-hCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCC
Q 001365          695 LVQKAA-EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPG  773 (1092)
Q Consensus       695 LvklLl-e~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin  773 (1092)
                      +++.|+ ..++++|.+|..|+||||+|+ .|+.++|+.||++|++++..+..|.+||+.|+..++.+++++++++|+++|
T Consensus        17 ~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n   95 (156)
T d1bd8a_          17 EVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN   95 (156)
T ss_dssp             HHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            555555 468999999999999999987 588999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHHHHh
Q 001365          774 ALSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAEVTG  830 (1092)
Q Consensus       774 ~~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~iaa  830 (1092)
                      .      +|..|+||||+|+..|+.+++++|+ .|     ++++.+|.+|.||...+
T Consensus        96 ~------~~~~~~t~L~~A~~~~~~~i~~~L~-~~-----~~~~~~d~~G~TpL~~A  140 (156)
T d1bd8a_          96 V------PDGTGALPIHLAVQEGHTAVVSFLA-AE-----SDLHRRDARGLTPLELA  140 (156)
T ss_dssp             C------CCTTSCCHHHHHHHHTCHHHHHHHH-TT-----SCTTCCCTTSCCHHHHH
T ss_pred             c------ccCCCCeeecccccccccccccccc-cc-----ccccccCCCCCCHHHHH
Confidence            7      7789999999999999999999988 45     68999999997775443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=5.3e-18  Score=165.17  Aligned_cols=126  Identities=25%  Similarity=0.198  Sum_probs=116.2

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAPGA  774 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdin~  774 (1092)
                      +++.|+++|++++ .|..|+||||+|+..++.++++.++.........+..+.+++|+++...+.+++++|+.+|++++.
T Consensus        17 ~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   95 (153)
T d1awcb_          17 EVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA   95 (153)
T ss_dssp             HHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC
T ss_pred             HHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccccCCcccc
Confidence            7889999999988 799999999999999999999999999999988999999999999999999999999999999877


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcH-HHHhhh
Q 001365          775 LSDPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVA-EVTGAT  832 (1092)
Q Consensus       775 ~~D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta-~iaa~~  832 (1092)
                            +|..|+||||+|+..|+.+++++|++.|     ++++.+|..|.|| .++...
T Consensus        96 ------~~~~g~T~L~~A~~~g~~~iv~~ll~~g-----ad~~~~d~~g~Tpl~~A~~~  143 (153)
T d1awcb_          96 ------KDMLKMTALHWATEHNHQEVVELLIKYG-----ADVHTQSKFCKTAFDISIDN  143 (153)
T ss_dssp             ------CCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHT
T ss_pred             ------ccccCchHHHhhhhcchhheeeeccccc-----cCCcccCCCCCCHHHHHHHc
Confidence                  7899999999999999999999999999     7899999999666 444443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.7e-17  Score=165.37  Aligned_cols=78  Identities=15%  Similarity=0.065  Sum_probs=73.8

Q ss_pred             HHHHHHhCCCCCCcccCCCCcHHHHHHHcCCHhHHHHHHHCCCCccccCCCCccHHHHHHHcCCHHHHHHHHHcCCCC
Q 001365          695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGRERTVASLIALGAAP  772 (1092)
Q Consensus       695 LvklLle~GadvN~~D~~G~TpLH~AA~~G~~~iVk~LL~~Gadin~~D~~G~TpLH~Aa~~G~~eiV~~LLe~GAdi  772 (1092)
                      ++++|+++|+++|.+|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++.++..
T Consensus        63 iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          63 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            566778889999999999999999999999999999999999999999999999999999999999999999988754

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.3e-17  Score=182.29  Aligned_cols=143  Identities=16%  Similarity=0.098  Sum_probs=113.1

Q ss_pred             CCCcchHHHHhhhhcCCChHHHHHHHHHHHHHhhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHcCCH-------hHH
Q 001365          657 ENDDWDLMLKLTAEEKFSSEEVKEKLVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYD-------WAL  729 (1092)
Q Consensus       657 d~~g~t~L~~a~~~~~~s~~~~~~~lL~~a~k~~l~~~LvklLle~GadvN~~D~~G~TpLH~AA~~G~~-------~iV  729 (1092)
                      |..|+||||.|+..++.+                    ++++|+++|++++.+|..|+||||+||..|+.       +++
T Consensus       104 D~~G~T~LH~Aa~~g~~~--------------------~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll  163 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLE--------------------LVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL  163 (301)
T ss_dssp             STTCCCHHHHHHHTTCHH--------------------HHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHH--------------------HHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHH
Confidence            368999999999877653                    78899999999999999999999999987752       334


Q ss_pred             HHHHHCCCCccccCCCCccHHHHHHHcCCH------------HHHHHHHHcCCCCCCCC---------------------
Q 001365          730 EPTTVAGVNINFRDVNGWTALHWAAYCGRE------------RTVASLIALGAAPGALS---------------------  776 (1092)
Q Consensus       730 k~LL~~Gadin~~D~~G~TpLH~Aa~~G~~------------eiV~~LLe~GAdin~~~---------------------  776 (1092)
                      ++|   +.+++.+|..|+||||+|+..+..            .++..|+..+.......                     
T Consensus       164 ~~l---~~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (301)
T d1sw6a_         164 DYL---YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE  240 (301)
T ss_dssp             HHH---GGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHH
T ss_pred             HHH---hhhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHH
Confidence            444   345778899999999999875542            23445555554421100                     


Q ss_pred             ----------CCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcccCcccCCCCCcHH
Q 001365          777 ----------DPTPKYPSGRTPADLASSIGHKGIAGYLAESDLSSALSAISLNKKDGDVAE  827 (1092)
Q Consensus       777 ----------D~n~~D~~G~TPLhlAa~~G~~eiv~~LLe~Ga~~h~adlnlkD~~G~ta~  827 (1092)
                                .+|.+|..|+||||+|+++|+.++|++|+++|     ++++++|+.|.||.
T Consensus       241 ~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~G-----Ad~~~~n~~G~Tpl  296 (301)
T d1sw6a_         241 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG-----ADPFIANKSGLRPV  296 (301)
T ss_dssp             HCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT-----CCTTCCCTTSCCGG
T ss_pred             HHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCCCCCHH
Confidence                      25779999999999999999999999999999     78999999997764

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=97.67  E-value=1.2e-05  Score=97.90  Aligned_cols=49  Identities=22%  Similarity=0.287  Sum_probs=43.4

Q ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 001365          918 EPVHAAATRIQNKFRSWKGRKDFLII---RKQIIKIQAYVRGHQVRKNYKKI  966 (1092)
Q Consensus       918 ~~l~~AA~~IQ~~~Rg~~~Rk~fl~~---r~~av~IQa~~Rg~~aRk~y~~~  966 (1092)
                      +.+.++|+.||+.||||+.||+|+++   |+++++||++||||++||+|..+
T Consensus       732 ~~l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~~~~  783 (794)
T d2mysa2         732 DKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHWPWM  783 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            45778899999999999999999887   66899999999999999988655

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=97.67  E-value=1.3e-05  Score=97.26  Aligned_cols=49  Identities=20%  Similarity=0.262  Sum_probs=43.9

Q ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 001365          918 EPVHAAATRIQNKFRSWKGRKDFLIIRK---QIIKIQAYVRGHQVRKNYKKI  966 (1092)
Q Consensus       918 ~~l~~AA~~IQ~~~Rg~~~Rk~fl~~r~---~av~IQa~~Rg~~aRk~y~~~  966 (1092)
                      +.+.++|+.||+.||||+.||+|+++|+   ++++||++||||++||+|+..
T Consensus       728 ~~l~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~~~~  779 (789)
T d1kk8a2         728 ERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWW  779 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence            4678899999999999999999999987   688999999999999988643

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=96.81  E-value=0.0008  Score=81.40  Aligned_cols=48  Identities=17%  Similarity=0.080  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccc
Q 001365          939 DFLIIRKQIIKIQAYVRGHQVRKNYKKI---IWSVGIMEKIILRWRRRGSG  986 (1092)
Q Consensus       939 ~fl~~r~~av~IQa~~Rg~~aRk~y~~~---~~a~~~iqk~irr~r~kr~g  986 (1092)
                      +-..+.++|+.||++||||++||+|+++   +.|+.+||+.+|+|+.+|.-
T Consensus       730 r~~~l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~  780 (794)
T d2mysa2         730 RDDKLAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHW  780 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3356667899999999999999999887   56899999999999876643

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=96.75  E-value=0.0009  Score=80.91  Aligned_cols=45  Identities=29%  Similarity=0.420  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcc
Q 001365          941 LIIRKQIIKIQAYVRGHQVRKNYKKIIW---SVGIMEKIILRWRRRGS  985 (1092)
Q Consensus       941 l~~r~~av~IQa~~Rg~~aRk~y~~~~~---a~~~iqk~irr~r~kr~  985 (1092)
                      ..+.++|+.||++||||++||+|++++.   ++.+||+.+|+|..+|.
T Consensus       728 ~~l~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~  775 (789)
T d1kk8a2         728 ERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN  775 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3566789999999999999999999875   67799999999977764

>d2cxka1 b.1.18.1 (A:872-953) Calmodulin binding transcription activator 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
domain: Calmodulin binding transcription activator 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=1.9e-05  Score=68.91  Aligned_cols=67  Identities=40%  Similarity=0.828  Sum_probs=57.6

Q ss_pred             EEeeccccccCCCCeeEEEEecCcCCcccChHHHHHHHcCCcHHHHHHHHCCCCCCCCCCCCCCchHHHHHH
Q 001365          510 IIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTC  581 (1092)
Q Consensus       510 I~dfSP~wa~s~~~tKVlI~G~fl~~~~~~TpLH~A~~fG~veVv~~LL~~Gadin~~~~d~~G~TPLHlAa  581 (1092)
                      |++|+|.|++..|+++|.|.|.++....     .++|+||...+....+..+...|..|++..|..+|.++.
T Consensus         2 It~isP~~G~~~GGt~V~I~G~~f~~~~-----~~~c~fG~~~~~~~~vs~~~i~C~tP~~~~G~v~v~Vs~   68 (82)
T d2cxka1           2 VTDYSPEWSYPEGGVKVLITGPWQEASN-----NYSCLFDQISVPASLIQPGVLRCYCPAHDTGLVTLQVAF   68 (82)
T ss_dssp             CCEEECSEECTTCCCEEEEESSCCCCSS-----CEEEEETTEEEECEEEETTEEEEECCCCCSEEEEEEEEE
T ss_pred             EeEEcCCceeCCCCEEEEEEEccccccc-----eEEEEEEeeecceEEEeeeEEEEEcCcccceeEEEEEEE
Confidence            7899999999999999999998776533     267999999888888888888999999988988877654

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=89.61  E-value=0.11  Score=61.51  Aligned_cols=32  Identities=28%  Similarity=0.413  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001365          936 GRKDFLIIRKQIIKIQAYVRGHQVRKNYKKII  967 (1092)
Q Consensus       936 ~Rk~fl~~r~~av~IQa~~Rg~~aRk~y~~~~  967 (1092)
                      .+.+-..+.+++++||++||||++||+|++++
T Consensus       698 E~~r~~~l~~~~~~iQ~~~R~~l~Rk~~~r~r  729 (730)
T d1w7ja2         698 EKIRADKLRAACIRIQKTIRGWLMRKKYMRMR  729 (730)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34444566778999999999999999998874

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=85.18  E-value=0.17  Score=60.10  Aligned_cols=28  Identities=36%  Similarity=0.714  Sum_probs=25.3

Q ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001365          918 EPVHAAATRIQNKFRSWKGRKDFLIIRK  945 (1092)
Q Consensus       918 ~~l~~AA~~IQ~~~Rg~~~Rk~fl~~r~  945 (1092)
                      +.+..+|+.||+.||||..||+|+++|+
T Consensus       703 ~~l~~~~~~iQ~~~R~~l~Rk~~~r~r~  730 (730)
T d1w7ja2         703 DKLRAACIRIQKTIRGWLMRKKYMRMRR  730 (730)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4577899999999999999999999885