Citrus Sinensis ID: 001366

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090--
MDDMDEGVGEVAPVNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIPEGTSSDGSFQILADMLEGKSVNRIVSPMDASENPCPHSDSDAGIMVEELTVRKSNSSNLAIVGTSNHRERISTRHDRWQHLYQLGSGSGSGSSRGDRGHGRTMLGAWEDVGDTSLHDFITQKPLNDEHNTILEQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLSSIDQDDSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLKKPLVDPSLQNESAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQLSDSDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEcccccccccccccccccEEEccccccccccccccccccccccccccccccccHHHHccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHcccccCEEEcccccccHHHcccccccccccccccccHHHHHHcccccccccccccccccccEEECcccccccccccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccccEEECccccEEEEcccccccccccccccccccccHHHHcccHHHHHccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccHHHcccccccccccccccHHHHHHccccccHHHHHHHHHHHHHcccccHHHccccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHccccccEEEEEccccCEEEccccccccccccccccccccEEEccccccccccccccccccccEEEEEEEccEEccEEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccccccccccccEEEcccccEEEEEEEcccccEEEEEcccccEEEEEcccccEEEEcccccccEEEEEEccccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEcccccccccccccccccEEEEEEccccEEEEEcccccEEEEccccccccccccccccEEECcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccccccccccccccccEEEEEEEcccccEEEEEcccccEEEEEcc
**************************************************TSSDGSFQILADMLEGK**************************VEELTVRKSNSSN*******************WQHLYQ********************************H********************************************SGFSEFFVKTTLKGKGIVCRGPPLNAFKE****************************************************GARTGVPASCW*********DHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPI**********************************************************************************************************************LEEKWYA**EELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEEL*******DSESELLLHFLISLEEEKQNQASKLVGEIRSLEADIKEVERRHYLK**********************************ISDANEMRLMRNLNQLERAYFSM*S***********RADNDLLRDRENLFLAQQD******TDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV
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MDDMDEGVGEVAPVNAAEGAPLQNKEIEYSLRPESCNNVLESGEMAIPEGTSSDGSFQILADMLEGKSVNRIVSPMDASENPCPHSDSDAGIMVEELTVRKSNSSNLAIVGTSNHRERISTRHDRWQHLYQLGSGSGSGSSRGDRGHGRTMLGAWEDVGDTSLHDFITQKPLNDEHNTILEQSANTENDGLSGNMLSHGSIRTKMLSKSGFSEFFVKTTLKGKGIVCRGPPLNAFKERRGMIDTKAFVTTTMPSDAALKAAGAMMVASNASPKPVGVGTAVVSNGSLDLGARTGVPASCWIGGLRQGSSDHGVNLREWLNARGHKGKRIECLYIFRQIVALVDYHHTQGVTFLDLKPSSFKLLQSNQVKYIGPIIQKETLESASLDIPHSENYRLRRRSAEEEMFTTGIASAKKQKFNHNMNFSRWWSLFPSKYGNKIETANESDINEVSIPHSHNDTNEHHTNAGFGNYSKSSSPLVSNTAQQQSTSVSEQLEEKWYASPEELSGGVCTTSSNIYSLGVLFFELFGRFDSERALAAAMSDLRDRILPPSFLSENPKEAGFCLWQLHPEPLSRPTTREILQSEVTNEFQEVCAEELLSSIDQDDSESELLLHFLISLxxxxxxxxxxxxxxxxxxxxxxxxxxxxHYLKKPLVDPSLQNESAPSRENRYFNEQLSSSEAQLSPISDANEMRLMRNLNQLERAYFSMRSQIQLSDSDSTTRADNDLLRDRENLFLAQQDQEIQNPTDRLGAFFDGLCKYARYSKFEVQGMLRTGEFNNSANVICSISFDRDEDHFAAAGVSKKIKIFEFNALFNDSVDVYYPAVEMSNRSKLSCVCWNNYIKNYLASADYDGVVKLWDACTGQTVSHYIEHEKRAWSVDFSQVHPTKLASGSDDCSVKLWNINEKNSLATIKNIANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGPSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Protein SPA1-RELATED 2 Involved in suppression of photomorphogenesis in dark-grown seedlings. Probably part of the COP1/SPA E3 ubiquitin-protein ligase complex.probableQ9T014

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2YMU, chain A
Confidence level:very confident
Coverage over the Query: 747-1044,1059-1091
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Template: 1ERJ, chain A
Confidence level:very confident
Coverage over the Query: 777-985,997-1044,1059-1091
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Template: 1VYH, chain C
Confidence level:very confident
Coverage over the Query: 723-1034
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Template: 4G31, chain A
Confidence level:very confident
Coverage over the Query: 221-285,297-376,494-588
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Template: 4F9C, chain A
Confidence level:confident
Coverage over the Query: 214-288,305-385,446-450,492-588
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Template: 1WAK, chain A
Confidence level:confident
Coverage over the Query: 214-378,419-456,487-586
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Template: 3Q5I, chain A
Confidence level:confident
Coverage over the Query: 185-288,305-382,487-589
View the alignment between query and template
View the model in PyMOL